Citrus Sinensis ID: 027824

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEccccccHHHHHHHHHccccccccccccEEEEcEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHcHHccccccccccccccccEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEccccEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHccHHHHcccccccccccccccccccEEEcccccccccccccccc
Coil and Loop (DISEMBL)
magykpdeeyDYLFKLVLIGdsgvgksnllsrftknefnleskstigveFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAveagsngtastlpskgetinvkddssvlkrigccsn
Flexible Loop (DISEMBL)
magykpdeEYDYLFKLVLIGDSGVGKSNLLSrftknefnleskstigvefatrslridnkvvkaqiwdtagQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRaveagsngtastlpskgetinvkddssvlkrigccsn
Low Complexity Region (SEG)
MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN
Disordered region (IsUnstruct)
********EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA************************************
Disordered Region (DISOPRED)
******D****YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY*************************************IGCCS*
Disordered Region (DISEMBL)
MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN
Disordered Region (DISPRO)
******DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q40194	218	Ras-related protein Rab11	N/A	no	0.995	0.995	0.861	1e-110
Q40195	218	Ras-related protein Rab11	N/A	no	1.0	1.0	0.839	1e-107
P28185	216	Ras-related protein RABA1	yes	no	0.990	1.0	0.844	1e-107
Q01111	218	Ras-related protein YPT3	N/A	no	1.0	1.0	0.816	1e-105
P40393	217	Ras-related protein RIC2	no	no	0.981	0.986	0.800	1e-101
Q39222	216	Ras-related protein RABA1	no	no	0.990	1.0	0.798	1e-100
Q9FK68	216	Ras-related protein RABA1	no	no	0.990	1.0	0.784	1e-100
Q9SN35	214	Ras-related protein RABA1	no	no	0.981	1.0	0.784	1e-100
Q9FJH0	217	Ras-related protein RABA1	no	no	0.986	0.990	0.75	4e-96
Q40521	217	Ras-related protein Rab11	N/A	no	0.977	0.981	0.751	5e-95

>sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1

 Score =  396 bits (1018), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/217 (86%), Positives = 206/217 (94%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           M GY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++L +D K
Sbjct: 1   MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+N  RWL+ELR+HTDPNI+
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK+DLRHLVAV TEDGK+FAE+ESLYFMETSAL+ATNVENAFTEVLTQIY+IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 217
           RAVEAG +G++S LPSKG+TINVK+DSSVLKR GCCS
Sbjct: 181 RAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCS 217

Lotus japonicus (taxid: 34305)

>sp|Q40195|RB11E_LOTJA Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/218 (83%), Positives = 201/218 (92%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGYK D+EYDYLFKLVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+SL ID K
Sbjct: 1   MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TF+  GRWL+ELR+HTDPNI+
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK+DLRHLV VSTEDGKAFAE+ESLYFMETSAL+ATNVENAF+EVLTQIY+IVSK
Sbjct: 121 VMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           RAVEAG   + S +PS+G+TINV +DSSVL R  CCSN
Sbjct: 181 RAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCSN 218

Lotus japonicus (taxid: 34305)

>sp|P28185|RAA1A_ARATH Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=1 SV=1

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/218 (84%), Positives = 202/218 (92%), Gaps = 2/218 (0%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGY+ DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++ +++ K
Sbjct: 1   MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRHATF+N  RWLRELR HTDPNI+
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK DLRHLVAV TE+ KAFAE+ESLYFMETSALDATNVENAFTEVLTQI+KIVSK
Sbjct: 121 VMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           R+V+ G  G ++ LP KGETINVK+D SVLKR+GCCSN
Sbjct: 181 RSVDGG--GESADLPGKGETINVKEDGSVLKRMGCCSN 216

Involved in auxin-mediated response. May be involved in vesicle trafficking of components involved in polar auxin transport. Binds GTP and GDP and possesses intrinsic GTPase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01111|YPT3_NICPL Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/218 (81%), Positives = 199/218 (91%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT+SL IDNK
Sbjct: 1   MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH T++NV RWL+ELR+HTDPNI+
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK+DLRHLVAVST++ K  AE+E LYFMETSAL+ATNVENAFTE LTQIY+IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           +AVEAG  G  S+ P KGETIN+KD+ S  K+ GCCS+
Sbjct: 181 KAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218

Protein transport. Probably involved in vesicular traffic.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|P40393|RIC2_ORYSJ Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/216 (80%), Positives = 201/216 (93%), Gaps = 2/216 (0%)

Query: 2   AGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV 61
           AGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSL++D KV
Sbjct: 3   AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKV 62

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIV 121
           VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV RWL+ELR+HTDPNI+V
Sbjct: 63  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVV 122

Query: 122 MLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
           ML+GNK+DLRHLVAV T++GKAFAE+ESLYFMETSAL++TNVENAF EVLTQIY+IVSKR
Sbjct: 123 MLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKR 182

Query: 182 AVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 217
           +VEAG +  A + P KGE IN+KDD S +K+ GCCS
Sbjct: 183 SVEAGDD--AGSGPGKGEKINIKDDVSAVKKGGCCS 216

Possesses GTPase activity.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q39222|RAA1B_ARATH Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/218 (79%), Positives = 200/218 (91%), Gaps = 2/218 (0%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATR+L++D K
Sbjct: 1   MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+NV RWL+EL+ HTDPNI+
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VML+GNK+DLRHL+AV TEDGK++AEQESL FMETSAL+ATNVE+AF EVLTQIY+I SK
Sbjct: 121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           + VEAG +G AS +P KGE I VK+D S LK++GCCSN
Sbjct: 181 KQVEAGEDGNAS-VP-KGEKIEVKNDVSALKKLGCCSN 216

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK68|RAA1C_ARATH Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/218 (78%), Positives = 198/218 (90%), Gaps = 2/218 (0%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGY+ D+EYDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATRSL +D+K
Sbjct: 1   MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV  WL+ELR HTDPNI+
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VML+GNK+DLRHLVAV TED K+FAE+ESLYFMETSAL+ATNVENAF EVLTQI+ IVSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           +A+EA S   ++ +PSKG+ I++  D S +K+ GCCSN
Sbjct: 181 KAMEAASE--SANVPSKGDKIDIGKDVSAVKKGGCCSN 216

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN35|RAA1D_ARATH Ras-related protein RABA1d OS=Arabidopsis thaliana GN=RABA1D PE=2 SV=1

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/218 (78%), Positives = 199/218 (91%), Gaps = 4/218 (1%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGY+ D++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSL ++ K
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV RWLRELR+HTDPNI+
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VML+GNK+DLRHLVAV TED K+FAE ESLYFMETSAL++TNVENAF+EVLTQIY +VSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           +A+EAG +  +  +PSKGE I+V  D S +K+ GCCSN
Sbjct: 181 KAMEAGED--SGNVPSKGEKIDV--DVSAVKKTGCCSN 214

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1

 Score =  350 bits (898), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 165/220 (75%), Positives = 197/220 (89%), Gaps = 5/220 (2%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MA Y+ D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRS+ +D+K
Sbjct: 1   MAAYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TF+NV RWL+ELR+HTD NI+
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           +M +GNK DLRHL AVSTED KAFAE+E+ +FMETSAL++ NVENAFTEVL+QIY++VS+
Sbjct: 121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query: 181 RAVEAGSNGTASTLPSKGETINV--KDDSSVLKRIGCCSN 218
           +A++ G +  A  LP KG+TINV  KDD S +K++GCCSN
Sbjct: 181 KALDIGDDPAA--LP-KGQTINVGSKDDVSAVKKVGCCSN 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1

 Score =  347 bits (889), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 163/217 (75%), Positives = 197/217 (90%), Gaps = 4/217 (1%)

Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVV 62
           GY+ +++YDYLFKLVLIGDSGVGKSNLLSRF++NEFNLESKSTIGVEFATRS+R+D+K+V
Sbjct: 4   GYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIV 63

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM 122
           KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRH TF+NV RWL+ELR+HTD NI++M
Sbjct: 64  KAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIM 123

Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA 182
           L+GNK DLRHL AVSTED KAFAE+E+ +FMETSAL++ NVENAFTEVLT+IYK+V ++A
Sbjct: 124 LVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKA 183

Query: 183 VEAGSNGTASTLPSKGETINV-KDDSSVLKRIGCCSN 218
           +E G +  A  LP KG+TINV KDD S +K++GCCS+
Sbjct: 184 LEVGDDPAA--LP-KGQTINVGKDDVSAVKKVGCCSS 217

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
351722661	218	small GTP-binding protein [Glycine max]	1.0	1.0	0.862	1e-109
351722751	218	uncharacterized protein LOC100499822 [Gl	1.0	1.0	0.862	1e-109
3024502	218	RecName: Full=Ras-related protein Rab11D	0.995	0.995	0.861	1e-108
303746	218	GTP-binding protein [Pisum sativum] gi|7	1.0	1.0	0.839	1e-107
225461703	218	PREDICTED: ras-related protein Rab11D is	0.995	0.995	0.829	1e-106
388521711	218	unknown [Lotus japonicus]	1.0	1.0	0.839	1e-105
3024529	218	RecName: Full=Ras-related protein Rab11E	1.0	1.0	0.839	1e-105
15221477	216	Ras-related protein RABA1a [Arabidopsis	0.990	1.0	0.844	1e-105
225443742	218	PREDICTED: ras-related protein RABA1d [V	1.0	1.0	0.821	1e-105
449438115	219	PREDICTED: ras-related protein Rab11D-li	1.0	0.995	0.840	1e-105

>gi|351722661|ref|NP_001235972.1| small GTP-binding protein [Glycine max] gi|22597172|gb|AAN03473.1| small GTP-binding protein [Glycine max]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/218 (86%), Positives = 207/218 (94%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGYK D+EYDYLFKLVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+SL ID K
Sbjct: 1   MAGYKGDDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDAK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+N  RWL+ELR+HTDPNI+
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK+DLRHLVAV TEDGK+FAE+ESLYFMETSAL+ATNVENAFTEVL+QIY+IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAEKESLYFMETSALEATNVENAFTEVLSQIYRIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           R VEAG N ++S +PSKG+TINVKDDSSVLK+IGCCSN
Sbjct: 181 RTVEAGKNASSSAVPSKGQTINVKDDSSVLKKIGCCSN 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722751|ref|NP_001236487.1| uncharacterized protein LOC100499822 [Glycine max] gi|255626919|gb|ACU13804.1| unknown [Glycine max]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/218 (86%), Positives = 208/218 (95%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGYK D+EYDYLFKLV IGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+SL ID K
Sbjct: 1   MAGYKGDDEYDYLFKLVFIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLDIDAK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+N  RWL+ELR+HTDPNI+
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK+DLRHLVAV TEDGK+FAE+ESLYFMETSAL+ATNVENAFTEVL+QIY+IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAEKESLYFMETSALEATNVENAFTEVLSQIYRIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           RAVEAG+N ++S +PSKG+TINVKDDSSVLK+IGCCSN
Sbjct: 181 RAVEAGNNASSSAVPSKGQTINVKDDSSVLKKIGCCSN 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3024502|sp|Q40194.1|RB11D_LOTJA RecName: Full=Ras-related protein Rab11D gi|1370148|emb|CAA98180.1| RAB11D [Lotus japonicus]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/217 (86%), Positives = 206/217 (94%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           M GY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++L +D K
Sbjct: 1   MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+N  RWL+ELR+HTDPNI+
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK+DLRHLVAV TEDGK+FAE+ESLYFMETSAL+ATNVENAFTEVLTQIY+IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 217
           RAVEAG +G++S LPSKG+TINVK+DSSVLKR GCCS
Sbjct: 181 RAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCS 217

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|303746|dbj|BAA02114.1| GTP-binding protein [Pisum sativum] gi|738938|prf||2001457F GTP-binding protein

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/218 (83%), Positives = 206/218 (94%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGY+ D+EYDYLFKLVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+SL ID+K
Sbjct: 1   MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDSK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+N  RWL+ELR+HTDPNI+
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK+DLRHLVAV TEDGK+FAE+ESLYFMETSAL+ATNVENAF+EVL+QIY IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFSEVLSQIYHIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           +AVEAG +G++S +PS G+TINVK+DSSV KR GCCSN
Sbjct: 181 KAVEAGESGSSSAVPSIGQTINVKEDSSVFKRFGCCSN 218

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461703|ref|XP_002285495.1| PREDICTED: ras-related protein Rab11D isoform 1 [Vitis vinifera] gi|147834751|emb|CAN75016.1| hypothetical protein VITISV_035368 [Vitis vinifera]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/217 (82%), Positives = 204/217 (94%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATR+L +D K
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATF+NV RWL+ELR HTDPNI+
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VML+GNK+DLRHLVAVSTEDGK +AE+ESLYFMETSAL+ATNVENAF EVLTQIY+IVSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDGKTYAERESLYFMETSALEATNVENAFAEVLTQIYRIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 217
           ++VE G  G AS++P+KGE INVKDD+S LKR+GCCS
Sbjct: 181 KSVEGGDEGAASSVPAKGERINVKDDASALKRVGCCS 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521711|gb|AFK48917.1| unknown [Lotus japonicus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/218 (83%), Positives = 201/218 (92%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGYK D+EYDYLFKLVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+SL ID K
Sbjct: 1   MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TF+  GRWL+ELR+HTDPNI+
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK+DLRHLV VSTEDGKAFAE+ESLYFMETSAL+ATNVENAF+EVLTQIY+IVSK
Sbjct: 121 VMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           RAVEAG   + S +PS+G+TINV +DSSVL R  CCSN
Sbjct: 181 RAVEAGDRASTSVVPSQGQTINVNEDSSVLNRYRCCSN 218

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3024529|sp|Q40195.1|RB11E_LOTJA RecName: Full=Ras-related protein Rab11E gi|1370150|emb|CAA98181.1| RAB11E [Lotus japonicus]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/218 (83%), Positives = 201/218 (92%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGYK D+EYDYLFKLVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+SL ID K
Sbjct: 1   MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TF+  GRWL+ELR+HTDPNI+
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK+DLRHLV VSTEDGKAFAE+ESLYFMETSAL+ATNVENAF+EVLTQIY+IVSK
Sbjct: 121 VMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           RAVEAG   + S +PS+G+TINV +DSSVL R  CCSN
Sbjct: 181 RAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCSN 218

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221477|ref|NP_172128.1| Ras-related protein RABA1a [Arabidopsis thaliana] gi|114086|sp|P28185.1|RAA1A_ARATH RecName: Full=Ras-related protein RABA1a; Short=AtRABA1a; AltName: Full=Ras-related protein Ara-2; AltName: Full=Ras-related protein Rab11E; Short=AtRab11E gi|8927677|gb|AAF82168.1|AC068143_10 Contains similarity to a Rab11 GTPase (Rab11a gene) from Lycopersicon esculentum gb|AJ245570 and is a member of the Ras family PF|00071. ESTs gb|T46264, gb|AI099600, gb|AA404778, gb|AI997429, gb|T88574 come from this gene [Arabidopsis thaliana] gi|12083264|gb|AAG48791.1|AF332428_1 putative GTP-binding protein RAB11D [Arabidopsis thaliana] gi|217835|dbj|BAA00829.1| small GTP-binding protein [Arabidopsis thaliana] gi|17644169|gb|AAL38782.1| putative GTP-binding protein RAB11D [Arabidopsis thaliana] gi|20465351|gb|AAM20079.1| putative GTP-binding protein [Arabidopsis thaliana] gi|332189861|gb|AEE27982.1| Ras-related protein RABA1a [Arabidopsis thaliana]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/218 (84%), Positives = 202/218 (92%), Gaps = 2/218 (0%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGY+ DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++ +++ K
Sbjct: 1   MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           VVKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRHATF+N  RWLRELR HTDPNI+
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK DLRHLVAV TE+ KAFAE+ESLYFMETSALDATNVENAFTEVLTQI+KIVSK
Sbjct: 121 VMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           R+V+ G  G ++ LP KGETINVK+D SVLKR+GCCSN
Sbjct: 181 RSVDGG--GESADLPGKGETINVKEDGSVLKRMGCCSN 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443742|ref|XP_002268815.1| PREDICTED: ras-related protein RABA1d [Vitis vinifera]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/218 (82%), Positives = 205/218 (94%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSL +D K
Sbjct: 1   MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV RWLRELR+HTDPNI+
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK+DLRHLVAVSTEDGK+FAE+ESLYFMETSAL+ATNV+NAF EVLTQIY+IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVSTEDGKSFAERESLYFMETSALEATNVDNAFAEVLTQIYRIVSK 180

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
           +A+EAG +G AS +PSKGE I+V  D S +KR+GCCSN
Sbjct: 181 KAMEAGDDGAASAVPSKGEKIDVGKDVSAMKRVGCCSN 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438115|ref|XP_004136835.1| PREDICTED: ras-related protein Rab11D-like [Cucumis sativus] gi|449530235|ref|XP_004172101.1| PREDICTED: ras-related protein Rab11D-like [Cucumis sativus]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/219 (84%), Positives = 205/219 (93%), Gaps = 1/219 (0%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MAGYK  +EYDYLFKLVLIGDSGVGKSNLLSRFT+N+FNLESKSTIGVEFAT+SL ID K
Sbjct: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTRNQFNLESKSTIGVEFATKSLEIDGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TF+N  RWL+ELR+HTDPN++
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRDHTDPNMV 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           VMLIGNK DLRHL+ V TEDGK+FAE+ESLYFMETSALDATNVE+AFTEVL+QIY+IVSK
Sbjct: 121 VMLIGNKCDLRHLILVPTEDGKSFAERESLYFMETSALDATNVESAFTEVLSQIYRIVSK 180

Query: 181 RAVEAGSNGTAS-TLPSKGETINVKDDSSVLKRIGCCSN 218
           R+VEAG  G+AS TLPSKG+TI+VKDDSSVLKRIGCCS+
Sbjct: 181 RSVEAGDIGSASTTLPSKGQTIDVKDDSSVLKRIGCCSS 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2202280	216	ARA-2 [Arabidopsis thaliana (t	0.990	1.0	0.844	4.7e-96
TAIR|locus:2015576	216	RABA1b "RAB GTPase homolog A1B	0.990	1.0	0.798	9.3e-91
TAIR|locus:2124092	214	RABA1d "RAB GTPase homolog A1D	0.981	1.0	0.784	1.1e-89
TAIR|locus:2171943	216	RABA1c "RAB GTPase homolog A1C	0.990	1.0	0.784	1.4e-89
TAIR|locus:2159285	217	RABA1f "RAB GTPase homolog A1F	0.986	0.990	0.75	9.9e-87
TAIR|locus:2086290	217	RABA1g "RAB GTPase homolog A1G	0.986	0.990	0.736	3e-85
TAIR|locus:2018698	218	RABA1i "RAB GTPase homolog A1I	0.986	0.986	0.712	1.7e-82
TAIR|locus:2124593	217	RABA1e "RAB GTPase homolog A1E	0.981	0.986	0.689	1.5e-81
TAIR|locus:2057624	218	ArRABA1h "RAB GTPase homolog A	0.986	0.986	0.703	5.2e-81
TAIR|locus:2024992	214	RABA2b "RAB GTPase homolog A2B	0.954	0.971	0.677	4e-74

TAIR|locus:2202280 ARA-2 [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 184/218 (84%), Positives = 202/218 (92%)

Query:     1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
             MAGY+ DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++ +++ K
Sbjct:     1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGK 60

Query:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
             VVKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRHATF+N  RWLRELR HTDPNI+
Sbjct:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIV 120

Query:   121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
             VMLIGNK DLRHLVAV TE+ KAFAE+ESLYFMETSALDATNVENAFTEVLTQI+KIVSK
Sbjct:   121 VMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSK 180

Query:   181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
             R+V+ G  G ++ LP KGETINVK+D SVLKR+GCCSN
Sbjct:   181 RSVDGG--GESADLPGKGETINVKEDGSVLKRMGCCSN 216

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

GO:0003924 "GTPase activity" evidence=IDA

TAIR|locus:2015576 RABA1b "RAB GTPase homolog A1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 174/218 (79%), Positives = 200/218 (91%)

Query:     1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
             MAGY+ +++YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATR+L++D K
Sbjct:     1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
             VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATF+NV RWL+EL+ HTDPNI+
Sbjct:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query:   121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
             VML+GNK+DLRHL+AV TEDGK++AEQESL FMETSAL+ATNVE+AF EVLTQIY+I SK
Sbjct:   121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query:   181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
             + VEAG +G AS +P KGE I VK+D S LK++GCCSN
Sbjct:   181 KQVEAGEDGNAS-VP-KGEKIEVKNDVSALKKLGCCSN 216

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=IMP

TAIR|locus:2124092 RABA1d "RAB GTPase homolog A1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 171/218 (78%), Positives = 199/218 (91%)

Query:     1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
             MAGY+ D++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSL ++ K
Sbjct:     1 MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
             V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV RWLRELR+HTDPNI+
Sbjct:    61 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query:   121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
             VML+GNK+DLRHLVAV TED K+FAE ESLYFMETSAL++TNVENAF+EVLTQIY +VSK
Sbjct:   121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query:   181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
             +A+EAG +  +  +PSKGE I+V  D S +K+ GCCSN
Sbjct:   181 KAMEAGED--SGNVPSKGEKIDV--DVSAVKKTGCCSN 214

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2171943 RABA1c "RAB GTPase homolog A1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 171/218 (78%), Positives = 198/218 (90%)

Query:     1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
             MAGY+ D+EYDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATRSL +D+K
Sbjct:     1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
             V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TF+NV  WL+ELR HTDPNI+
Sbjct:    61 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query:   121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
             VML+GNK+DLRHLVAV TED K+FAE+ESLYFMETSAL+ATNVENAF EVLTQI+ IVSK
Sbjct:   121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query:   181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
             +A+EA S   ++ +PSKG+ I++  D S +K+ GCCSN
Sbjct:   181 KAMEAASE--SANVPSKGDKIDIGKDVSAVKKGGCCSN 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2159285 RABA1f "RAB GTPase homolog A1F" [Arabidopsis thaliana (taxid:3702)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 165/220 (75%), Positives = 197/220 (89%)

Query:     1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
             MA Y+ D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRS+ +D+K
Sbjct:     1 MAAYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
             +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TF+NV RWL+ELR+HTD NI+
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query:   121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
             +M +GNK DLRHL AVSTED KAFAE+E+ +FMETSAL++ NVENAFTEVL+QIY++VS+
Sbjct:   121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query:   181 RAVEAGSNGTASTLPSKGETINV--KDDSSVLKRIGCCSN 218
             +A++ G +  A  LP KG+TINV  KDD S +K++GCCSN
Sbjct:   181 KALDIGDDPAA--LP-KGQTINVGSKDDVSAVKKVGCCSN 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2086290 RABA1g "RAB GTPase homolog A1G" [Arabidopsis thaliana (taxid:3702)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 162/220 (73%), Positives = 197/220 (89%)

Query:     1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
             MA Y+ D++YD+L+K+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRS+ +D K
Sbjct:     1 MAAYRADDDYDFLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDEK 60

Query:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
             +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TF+NV RWL+ELR+HT+ NI+
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIV 120

Query:   121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
             +ML+GNK DLRHL AVSTED KAFAE+E+ +FMETSAL+A NVENAFTEVL+QIY++ SK
Sbjct:   121 IMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRVASK 180

Query:   181 RAVEAGSNGTASTLPSKGETINV--KDDSSVLKRIGCCSN 218
             +A++ G + T  TLP KG++INV  KDD S +K++GCCS+
Sbjct:   181 KALDIGDDHT--TLP-KGQSINVGSKDDVSEVKKVGCCSS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2018698 RABA1i "RAB GTPase homolog A1I" [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 156/219 (71%), Positives = 194/219 (88%)

Query:     1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
             M  Y+ +++YDYLFK+VL GDSGVGKSNLLSRFT+N+F+ +S++TIGVEFATRS++ D+K
Sbjct:     1 MGAYRAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDK 60

Query:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
             +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TF+NV RWL+ELR+HTD NI+
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query:   121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
             +ML+GNK DLRHL A+STE+ KAFAE+E+ +FMETSAL+A NV+NAFTEVLTQIY++VSK
Sbjct:   121 IMLVGNKADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSK 180

Query:   181 RAVEAGSNGTASTLPSKGETINV--KDDSSVLKRIGCCS 217
             +A+EAG + T + LP KG+ INV  +DD S +K+ GCCS
Sbjct:   181 KALEAGDDPTTA-LP-KGQMINVGGRDDISAVKKPGCCS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2124593 RABA1e "RAB GTPase homolog A1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 151/219 (68%), Positives = 191/219 (87%)

Query:     1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
             M  Y+ D++YDYLFKLVLIGDSGVGKSNLLSRFT+NEF++ESKSTIGVEFATRS+ +D K
Sbjct:     1 MGAYRADDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEK 60

Query:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
             ++KAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+TRH TF+NV RWL+ELR+HTD N++
Sbjct:    61 IIKAQLWDTAGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVV 120

Query:   121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
             +ML+GNK DLRHL AV TE+ ++F+E+E+++FMETSALDATNVE AFT VLTQIY+++S+
Sbjct:   121 IMLVGNKADLRHLRAVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYRVMSR 180

Query:   181 RAVEAGSNGTASTLPSKGETINV--KDDSSVLKRIGCCS 217
             +A++    G   +LP KG+TI++  KDD + +K  GCCS
Sbjct:   181 KALDG--TGDPMSLP-KGQTIDIGNKDDVTAVKSSGCCS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2057624 ArRABA1h "RAB GTPase homolog A1H" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 154/219 (70%), Positives = 192/219 (87%)

Query:     1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
             M  YK +++YDYLFK+VL GDSGVGKSNLLSRFT+N+F+ +S+STIGVEFATRS+++D+K
Sbjct:     1 MGTYKAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRSTIGVEFATRSIQVDDK 60

Query:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
             +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TF+NV RWL+ELR+HTD N +
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANTV 120

Query:   121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
             +ML+GNK DL HL A+STE+ K FAE+E+ +FMETSAL+A NVENAFTEVLTQIY++VSK
Sbjct:   121 IMLVGNKADLNHLRAISTEEVKDFAERENTFFMETSALEAINVENAFTEVLTQIYRVVSK 180

Query:   181 RAVEAGSNGTASTLPSKGETINV--KDDSSVLKRIGCCS 217
             +A++AG + T + LP KG+ INV  +DD S +K+ GCC+
Sbjct:   181 KALDAGDDPTTA-LP-KGQMINVGSRDDVSAVKKSGCCA 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2024992 RABA2b "RAB GTPase homolog A2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 143/211 (67%), Positives = 174/211 (82%)

Query:     7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
             D EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+L+++ K VKAQI
Sbjct:     6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65

Query:    67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
             WDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV RWLRELR+H D NI++M+ GN
Sbjct:    66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVIMMAGN 125

Query:   127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
             K+DL HL +V+ EDG++ AE+E L F+ETSAL+ATN+E AF  +L++IY I+SK+A+ A 
Sbjct:   126 KSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYHIISKKALAAQ 185

Query:   187 SNGTASTLPSKGETINVKDDSSVLKRIGCCS 217
                 A  LP +G  IN+ D SS   R GCCS
Sbjct:   186 E--AAGNLPGQGTAINISD-SSATNRKGCCS 213

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40523	RB11A_TOBAC	No assigned EC number	0.6666	0.9724	0.9814	N/A	no
Q40520	RB11C_TOBAC	No assigned EC number	0.5774	0.9678	0.9504	N/A	no
Q40521	RB11B_TOBAC	No assigned EC number	0.7511	0.9770	0.9815	N/A	no
Q1PEX3	RAA1H_ARATH	No assigned EC number	0.7031	0.9862	0.9862	no	no
Q5R9M7	RB11A_PONAB	No assigned EC number	0.6525	0.9633	0.9722	yes	no
Q40195	RB11E_LOTJA	No assigned EC number	0.8394	1.0	1.0	N/A	no
Q40194	RB11D_LOTJA	No assigned EC number	0.8617	0.9954	0.9954	N/A	no
Q40193	RB11C_LOTJA	No assigned EC number	0.6775	0.9770	0.9861	N/A	no
Q40191	RB11A_LOTJA	No assigned EC number	0.6124	0.9449	0.9115	N/A	no
Q39222	RAA1B_ARATH	No assigned EC number	0.7981	0.9908	1.0	no	no
P17610	YPT3_SCHPO	No assigned EC number	0.7005	0.8899	0.9065	yes	no
Q9FJH0	RAA1F_ARATH	No assigned EC number	0.75	0.9862	0.9907	no	no
P40393	RIC2_ORYSJ	No assigned EC number	0.8009	0.9816	0.9861	no	no
Q9S810	RAA1I_ARATH	No assigned EC number	0.7123	0.9862	0.9862	no	no
P28185	RAA1A_ARATH	No assigned EC number	0.8440	0.9908	1.0	yes	no
Q9FK68	RAA1C_ARATH	No assigned EC number	0.7844	0.9908	1.0	no	no
P36412	RB11A_DICDI	No assigned EC number	0.6129	0.9770	0.9953	yes	no
P46638	RB11B_MOUSE	No assigned EC number	0.7401	0.8119	0.8119	no	no
P62491	RB11A_HUMAN	No assigned EC number	0.6525	0.9633	0.9722	yes	no
Q9LK99	RAA1G_ARATH	No assigned EC number	0.7363	0.9862	0.9907	no	no
Q01111	YPT3_NICPL	No assigned EC number	0.8165	1.0	1.0	N/A	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.6525	0.9633	0.9722	yes	no
P22129	RB11B_DIPOM	No assigned EC number	0.6272	0.9403	0.9403	N/A	no
Q3MHP2	RB11B_BOVIN	No assigned EC number	0.6272	0.9403	0.9403	yes	no
P38555	YPT31_YEAST	No assigned EC number	0.5972	0.9495	0.9282	yes	no
Q40522	RB11D_TOBAC	No assigned EC number	0.5906	0.9587	0.9414	N/A	no
Q9SN35	RAA1D_ARATH	No assigned EC number	0.7844	0.9816	1.0	no	no
Q39572	YPTC6_CHLRE	No assigned EC number	0.6484	0.9587	0.9675	N/A	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.6525	0.9633	0.9722	yes	no
Q39434	RB2BV_BETVU	No assigned EC number	0.6854	0.9633	0.9813	N/A	no
P62490	RB11A_CANFA	No assigned EC number	0.6525	0.9633	0.9722	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.6525	0.9633	0.9722	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.6525	0.9633	0.9722	yes	no
P62494	RB11A_RAT	No assigned EC number	0.6525	0.9633	0.9722	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-125
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-116
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-103
pfam00071	162	pfam00071, Ras, Ras family	2e-89
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-85
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-74
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-74
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-70
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	5e-70
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-69
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-66
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-61
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-61
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-60
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-58
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-56
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-55
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-54
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-49
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	4e-49
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-48
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-46
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-46
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	4e-46
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	5e-46
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	4e-45
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-41
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-41
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-41
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-41
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	9e-41
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-39
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-38
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	5e-38
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-37
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-36
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	4e-35
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-32
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-31
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-30
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-30
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-30
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-29
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-29
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-29
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	9e-29
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-28
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	3e-28
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	8e-27
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	8e-27
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-26
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-26
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-26
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	8e-26
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	9e-26
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-25
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-25
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-25
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	3e-24
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	5e-24
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-23
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-23
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-21
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-21
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-20
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	6e-20
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-19
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	5e-19
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	7e-19
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	8e-19
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-18
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-18
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-18
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-18
pfam08477	116	pfam08477, Miro, Miro-like protein	5e-18
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-17
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-16
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-15
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-15
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	3e-15
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	8e-15
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-13
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-12
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-12
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-12
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-11
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	4e-09
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	3e-08
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	7e-08
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	8e-08
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	1e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	5e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	8e-07
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	8e-07
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-06
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-06
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	4e-06
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	5e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-05
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	2e-04
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	0.002
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	0.003
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	0.003
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.004

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  349 bits (898), Expect = e-125
 Identities = 127/165 (76%), Positives = 150/165 (90%)

Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           DYLFK+VLIGDSGVGKSNLLSRFT+NEFNL+SKSTIGVEFATR+++ID K +KAQIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           GQERYRAITSAYYRGAVGALLVYD+T+ +TF+NV RWL+ELR+H D NI++ML+GNK+DL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
           RHL AV TE+ KAFAE+  L F+ETSALD TNVE AF ++LT+IY
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  329 bits (845), Expect = e-116
 Identities = 147/215 (68%), Positives = 175/215 (81%), Gaps = 1/215 (0%)

Query: 4   YKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVK 63
           ++ D EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+L+++ K VK
Sbjct: 3   HRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK 62

Query: 64  AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVML 123
           AQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF NV RWLRELR+H D NI++M+
Sbjct: 63  AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMM 122

Query: 124 IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 183
            GNK+DL HL +V+ EDG+A AE+E L F+ETSAL+ATNVE AF  +L +IY I+SK+A+
Sbjct: 123 AGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKAL 182

Query: 184 EAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218
            A      S LP +G TINV D S   KR GCCS 
Sbjct: 183 AAQEAAANSGLPGQGTTINVADTSGNNKR-GCCST 216

Length = 216

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  294 bits (754), Expect = e-103
 Identities = 98/164 (59%), Positives = 128/164 (78%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FK++LIGDSGVGKS+LLSRFT  +F+ + KSTIGV+F T+++ +D K VK QIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R+ITS+YYRGAVGALLVYD+T   +F+N+  WL+ELRE+  PN+++ML+GNK+DL   
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
             VS E+ +AFAE+  L F ETSA   TNVE AF E+  +I K 
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  260 bits (666), Expect = 2e-89
 Identities = 90/162 (55%), Positives = 116/162 (71%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLVL+GD GVGKS+LL RFT+N+F  E   TIGV+F T+++ +D K VK QIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
           +RA+   YYRGA G LLVYD+T   +F+NV +WL E+  H D N+ ++L+GNK DL    
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 135 AVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            VSTE+G+A A++  L FMETSA    NVE AF E+  +I K
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  248 bits (637), Expect = 4e-85
 Identities = 88/157 (56%), Positives = 119/157 (75%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FK+VLIGDSGVGK++LL RF  N+F+   KSTIGV+F ++++ +D K VK QIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R+ITS+YYRGA GA+LVYDVT   +F+N+ +WL EL+E+  PNI ++L+GNK+DL   
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
             VSTE+ + FA++  L F ETSA    NV+ AF  +
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  222 bits (568), Expect = 1e-74
 Identities = 92/167 (55%), Positives = 115/167 (68%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H++ N+ +MLIGNK D
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L     VS E+G+AFA +  L FMETSA  A+NVE AF     +IY 
Sbjct: 121 LESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  222 bits (568), Expect = 1e-74
 Identities = 80/162 (49%), Positives = 112/162 (69%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GDS VGKS+++ RF KNEF+   +STIG  F T+++ +D+  VK +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RYR++   YYRGA  A++VYD+T   +F+    W++EL+EH  PNI++ L GNK DL   
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
             VSTE+ + +A++  L FMETSA    NV   FTE+  ++ 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  211 bits (540), Expect = 2e-70
 Identities = 84/164 (51%), Positives = 115/164 (70%)

Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           DYLFKL+LIGDSGVGKS LL RF+++ FN    STIG++F  R++ +D K +K QIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           GQER+R IT++YYRGA+G +LVYD+T   +F+N+  W+R + EH   ++  ML+GNK D+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
                VS E+G+A A +  + F+ETSA    NVE AF  +   I
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  212 bits (541), Expect = 5e-70
 Identities = 105/214 (49%), Positives = 131/214 (61%), Gaps = 13/214 (6%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + IDNK +K QIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H + N+ +MLIGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA--VEAGS 187
           L H  AVSTE+G+ FA++  L FME SA  A NVE AF +   +IYK +      V   S
Sbjct: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNES 182

Query: 188 NG-----TASTLPSKGETINVKDDSSVLKRIGCC 216
            G      A    S G       D +  +  GCC
Sbjct: 183 YGIKVGYGAIPGASGGR------DGTSSQGGGCC 210

Length = 210

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  209 bits (534), Expect = 2e-69
 Identities = 86/165 (52%), Positives = 113/165 (68%)

Query: 12  YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
           YLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K VK QIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131
           QER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK DL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
               V   + K FA++  + F+ETSA +ATNVE AF  +  +I K
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKK 165

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  201 bits (513), Expect = 2e-66
 Identities = 83/165 (50%), Positives = 116/165 (70%)

Query: 12  YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
           Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + ++ + +K QIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131
           QER+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN ++ LIGNK DL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
               V+ E+ K FA++  L F+E SA    NVE+AF E   +IY+
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  189 bits (481), Expect = 2e-61
 Identities = 74/165 (44%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           D+LFK++LIGDS VGK+ ++ RF    F+    +TIGV+F  ++L I  K VK QIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           GQER+R IT +YYR A GA++ YD+TR ++F++V  W+ E+ ++   N++++LIGNK DL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 131 RHLVAVSTEDGKAFAEQESLYF-METSALDATNVENAFTEVLTQI 174
                V  E+    AE   +   +ETSA +++NVE AF  + T++
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  189 bits (481), Expect = 2e-61
 Identities = 81/162 (50%), Positives = 114/162 (70%), Gaps = 2/162 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K++LIGDSGVGKS+LL RFT + F+ +  STIGV+F  +++ +D K VK  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRH 132
           R+R +TS+YYRGA G +LVYDVTR  TF N+  WL EL  ++  P+ + ML+GNK D  +
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V+ E+G+ FA + ++ F+ETSA     V+ AF E++ +I
Sbjct: 121 RE-VTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  185 bits (472), Expect = 3e-60
 Identities = 76/156 (48%), Positives = 105/156 (67%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK QIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R++T +YYRGA GALLVYD+T   +F  +  WL + R    P+I+++L+GNK DL   
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169
             V+  +   FA++  L F+ETSAL   NVE AF +
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLK 156

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  181 bits (462), Expect = 5e-58
 Identities = 79/190 (41%), Positives = 117/190 (61%), Gaps = 4/190 (2%)

Query: 12  YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTA 70
           Y F+L++IGDS VGKS+LL RFT+  F   S  T+GV+F +R + I     +K Q+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIV-MLIGNKTD 129
           GQER+R+IT +YYR +VG LLV+D+T   +F++V  WL E R H  P+  V +L+G+K D
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR--AVEAGS 187
           L     V+ E+ +  A+   + ++ETSA    NVE AF  +  +IY+ + +       G 
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGW 180

Query: 188 NGTASTLPSK 197
           +G  S  P+ 
Sbjct: 181 DGVKSGFPAG 190

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  176 bits (448), Expect = 2e-56
 Identities = 71/167 (42%), Positives = 115/167 (68%)

Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
           E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ I  + +K QIW
Sbjct: 2   EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
           DTAGQER+R+IT +YYR A   +L YD+T   +F+ +  WLRE+ ++ +  +I +L+GNK
Sbjct: 62  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNK 121

Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
            DL     VS +  + F++ + +Y++ETSA ++ NVE  F ++  ++
Sbjct: 122 IDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  173 bits (440), Expect = 3e-55
 Identities = 61/157 (38%), Positives = 110/157 (70%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            KLV +GD  VGK+++++RF  + F+ + ++TIG++F ++++ +D+K V+ Q+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R++  +Y R +  A++VYD+T   +F N  +W+ ++R+    ++I++L+GNKTDL   
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
             VSTE+G+  A++ +  F+ETSA    NV+  F ++
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKI 157

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  172 bits (438), Expect = 2e-54
 Identities = 82/166 (49%), Positives = 110/166 (66%), Gaps = 1/166 (0%)

Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           +YD+LFKL++IGDSGVGKS+LL RF  N F+    +TIGV+F  R++ I+ + VK QIWD
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWD 61

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL+E+ ++ D ++  +L+GNK 
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKN 120

Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           D      V TED   FA Q  +   ETSA +  NVE  F  +   +
Sbjct: 121 DDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELV 166

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  158 bits (403), Expect = 1e-49
 Identities = 61/164 (37%), Positives = 104/164 (63%), Gaps = 5/164 (3%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ + +D+++V  QIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVMLIGNKTD 129
           R++++  A+YRGA   +LVYDVT   +F+++  W  E      P    N   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 130 LRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLT 172
           L     VST+  + + + +    + ETSA +A NV+ AF  +  
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  158 bits (401), Expect = 4e-49
 Identities = 82/204 (40%), Positives = 114/204 (55%), Gaps = 14/204 (6%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKS-TIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           FK++L+GDSGVGK+ LL RF    F   S   T+G++F  + + +D   VK QIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132
           ER+R++T AYYR A   LL+YDVT  ++F N+  WL E+ E+   ++++ML+GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTAS 192
              V  EDG+  A++  + FMETSA    NVE AFT V  ++      R+VE        
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL----KHRSVEQPDEPKFK 176

Query: 193 TLPSKGETINVKDDSSVLKRIGCC 216
                             K  GCC
Sbjct: 177 I---------QDYVEKQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  155 bits (394), Expect = 3e-48
 Identities = 62/161 (38%), Positives = 98/161 (60%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FK+VL+G+  VGK++L+ R+ +N+FN + +ST    F  +++ I  K +   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY A+   YYR A GA+LVYD+T   +FQ V +W++EL++    NI ++++GNK DL   
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
             VS  + + +A+       ETSA     +E  F  +  ++
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  151 bits (382), Expect = 1e-46
 Identities = 67/162 (41%), Positives = 104/162 (64%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           +FKL++IG+S VGK++ L R+  + F     ST+G++F  +++  ++K +K QIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132
           ERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  V+L+GNK D+  
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              VS E G+  A+Q    F E SA +  NV+  F  ++  I
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  152 bits (384), Expect = 2e-46
 Identities = 87/210 (41%), Positives = 119/210 (56%), Gaps = 11/210 (5%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           YD  FK++LIGDSGVGKS+LL  F  +    +   TIGV+F  + L +  K +K  IWDT
Sbjct: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDT 69

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGR-WLRELREH-TDPNIIVMLIGNK 127
           AGQER+R +TS+YYR A G +LVYDVTR  TF N+   W +E+  + T+ + + ML+GNK
Sbjct: 70  AGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNK 129

Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGS 187
            D      VS E+G A A++    F+E SA    NVE  F E+  +I ++ S   +E GS
Sbjct: 130 VDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPS--LLEEGS 187

Query: 188 NGTASTLPSKGETINVKDDSSVLKRIGCCS 217
                    K   +  K +       GCCS
Sbjct: 188 TAV------KRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  150 bits (379), Expect = 4e-46
 Identities = 70/157 (44%), Positives = 101/157 (64%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           F+L+LIGDSGVGK+ LL RFT NEF+    STIGV+F  +++ +D   V+ QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY+ IT  YYR A G  LVYD++   ++Q++ +W+ ++ E+    +  +LIGNK D    
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
             V  E G   A++  + F ETSA    N++ +FT +
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRL 157

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  150 bits (380), Expect = 5e-46
 Identities = 71/180 (39%), Positives = 110/180 (61%), Gaps = 15/180 (8%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV-------- 61
           YDYL KL+ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  +++         
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 62  --VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHT---D 116
             V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ H    +
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 117 PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           P+I+  LIGNK DL     VS    +  A++  + + ETSA    NVE A   +L  I K
Sbjct: 121 PDIV--LIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  147 bits (373), Expect = 4e-45
 Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 2/168 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ ID + +K Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 74  RYR-AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIV-MLIGNKTDLR 131
           R+R ++   YYR     + VYDVT  A+F ++  W+ E  +H+ PN +  +L+GNK DLR
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVS 179
             + V T+  + FA+  S+   ETSA D +  ++     +T  +K+ S
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLKS 170

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  138 bits (350), Expect = 1e-41
 Identities = 70/170 (41%), Positives = 103/170 (60%), Gaps = 12/170 (7%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + L +D   V  QIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-------PNIIVMLIG 125
           ER+R++ + +YRG+   LL + V    +FQN+  W +E   + D       P +I+   G
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL---G 121

Query: 126 NKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQI 174
           NK D+     VSTE+ +A+      Y + ETSA DATNV  AF E + ++
Sbjct: 122 NKIDIPER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  139 bits (353), Expect = 1e-41
 Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 16/210 (7%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQ 72
           FK+++IGD GVGK++++ R+    F+   K+TIGV+FA + +  D N VV+ Q+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL--REHTDPN--IIVMLIGNKT 128
           ER+  +T  YY+GAVGA++V+DVTR +TF+ V +W  +L  +        I  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 129 DLRHLV-AVSTEDGKAF-AEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
           DL+    A   E    F  E   + + ETSA +  N+E A   ++  I K  + + +++ 
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILK--NDKGLQSP 178

Query: 187 SNGTASTLPSKGETINVKDDSSVLKRIGCC 216
                + +  K ET   K  S       CC
Sbjct: 179 EPDEDNVIDLKQETTTSKSKS-------CC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  138 bits (350), Expect = 1e-41
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 2/161 (1%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++G  GVGKS L  RF   EF  E   TI  +   + + +D +     I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKTDLRHL 133
           + A+   Y R   G +LVY +T   +F+ +     ++       ++ ++L+GNK DL + 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
             VSTE+G+A AE+    F+ETSA    N++  F  ++ +I
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  139 bits (352), Expect = 2e-41
 Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 18/190 (9%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           +   FK+V++GD GVGK+ LL+R   +EF      TIG     +++    + +K Q+WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           AGQE YR++   YYRGA G L+VYD T    + +    WL ELRE    ++ ++L+GNK 
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 129 DLRHLVAVSTEDGKAFAEQESLY---------------FMETSA--LDATNVENAFTEVL 171
           DL    + S E       +  L                 +ETSA  L   NV   F E+L
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 172 TQIYKIVSKR 181
            ++ + + K 
Sbjct: 182 RKLLEEIEKL 191

Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  136 bits (344), Expect = 9e-41
 Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 4/162 (2%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNE-FNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
            K+V++GD  VGKS LL+R   N+    E K      + T  +  D K  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRH--ATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           E Y AI   YYR    +L V+D+        + + +  +E+  H +  + ++L+GNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172
           R    + T     FA+      +  SA    N+++AF  V  
Sbjct: 122 RDA-KLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  134 bits (339), Expect = 1e-39
 Identities = 64/163 (39%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           ++++IG  GVGK++L+ RFT + F    KST+GV+F  +++ +  K ++ QIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
           + +ITSAYYR A G +LVYD+T+  TF ++ +W++ + ++   +  ++L+GNK D     
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 135 AVSTEDGKAFAEQES-LYFMETSALDATNVENAFTEVLTQIYK 176
            ++ + G+ FA+Q + + F E SA D  NV+  F +++  I K
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 164

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  129 bits (328), Expect = 3e-38
 Identities = 64/165 (38%), Positives = 94/165 (56%), Gaps = 4/165 (2%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F +  F  E   TI  +   + + ID +V    I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
            + A+   Y R   G LLVY +T   +F+ + +  RE  LR     ++ ++L+GNK DL 
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAK-FREQILRVKDRDDVPIVLVGNKCDLE 120

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           +   VSTE+GK  A Q    F+ETSA +  NV+ AF +++ +I K
Sbjct: 121 NERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRK 165

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  129 bits (326), Expect = 5e-38
 Identities = 63/165 (38%), Positives = 93/165 (56%), Gaps = 4/165 (2%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F +  F  +   TI  +   + + ID +V    I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
            + A+   Y R   G LLVY +T   +F+ + +  RE  LR     ++ ++L+GNK DL 
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLE 118

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
               VSTE+GK  A Q    F+ETSA +  NV+ AF +++ +I K
Sbjct: 119 SERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIRK 163

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  128 bits (323), Expect = 2e-37
 Identities = 61/163 (37%), Positives = 97/163 (59%), Gaps = 1/163 (0%)

Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
           + YDYL K +L+GDS VGK  +L+              +G+++ T ++ +D + VK Q+W
Sbjct: 1   KAYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLW 60

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
           DT+GQ R+  I  +Y RGA G +LVYD+T   +F  + RW++E+ EH  P +  +L+GN+
Sbjct: 61  DTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNR 119

Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
             L     V+TE  +A+AE+  + F E S L   N+  +FTE+
Sbjct: 120 LHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  124 bits (313), Expect = 4e-36
 Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 4/157 (2%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K++L+GDS VGKS L+ RF  + +  +  ST  +     + + + K +    WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
           ++ + ++YY  A   +LV+DVTR  T++N+ +W  ELRE+  P I  +++ NK DL   V
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPSV 120

Query: 135 AVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171
              T+    FAE+ +L     SA D TNV   F + +
Sbjct: 121 ---TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI 154

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  121 bits (306), Expect = 4e-35
 Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 3/155 (1%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRS--LRIDNKVVKAQIWDTAGQ 72
           K++++G+  VGKS+++ RF K  F  + K TIGV+F  +   LR  ++ V+  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132
           E + AIT AYYRGA   +LV+  T   +F+ +  W +E  E    +I ++L+  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESW-KEKVEAECGDIPMVLVQTKIDLLD 120

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
              ++ E+ +A A++  L    TS  D  NV   F
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  115 bits (290), Expect = 1e-32
 Identities = 53/167 (31%), Positives = 93/167 (55%), Gaps = 5/167 (2%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K++ +G+SGVGKS ++ R+ +  F  +   TIG+++  + + + NK V+   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-----NIIVMLIGNKTD 129
           Y  + + +Y+   G LLVYDVT   +F+ +  WL+E+++   P     NI+V++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L    AVS ++G+ +AE +   + ETSA     V   F  + + I  
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  112 bits (282), Expect = 2e-31
 Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F ++ F  +   TI   + T+   ID +  +  I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
            + A+   Y R   G LLV+ VT   +F+ V ++  + LR        ++L+GNK DL H
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              VS E+G+  A Q  + ++ETSA D  NV+ AF +++  I
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  111 bits (279), Expect = 1e-30
 Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 6/164 (3%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATR-SLRIDNKVVKAQIWDTAGQE 73
           KLV++GD GVGK+ L  +   N F      TI  E + R  + +D +    ++ DTAGQE
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI--EDSYRKQVVVDGQPCMLEVLDTAGQE 58

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRW---LRELREHTDPNIIVMLIGNKTDL 130
            Y A+   + R   G +LVY +T  +TF+ V R+   ++ +++ +  ++ +M++GNK D 
Sbjct: 59  EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK 118

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
            +   VSTE+G A A +    F+E SA    NVE AF  ++  +
Sbjct: 119 VYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  110 bits (278), Expect = 1e-30
 Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 15/168 (8%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V++GD  VGK+ LL  +T N+F  E   T+  +  + ++ +D K V   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      LL + V   ++F+NV  +W  E++ +  PN+ ++L+G K DLR  
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYC-PNVPIILVGTKIDLRDD 119

Query: 132 ---------HLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTE 169
                        ++ E+G+  A++     +ME SAL    ++  F E
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDE 167

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  110 bits (276), Expect = 1e-30
 Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 2/164 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K++++G  GVGKS L  +F  +EF  + + T    +  + + +D + V+  I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQLNILDTAGQE 59

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLRH 132
            Y AI   Y+R   G LLV+ +T   +F  +     + LR   D N+ ++L+GNK DL  
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              VS E+    AEQ  + ++ETSA    NV+  F +++ +I +
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  108 bits (272), Expect = 1e-29
 Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 20/207 (9%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEF-NLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           K+V++G   VGK++L+ R+  + F     ++TIG  F  + + +  +VV   IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--- 130
           RY A++  YYRGA  A++ YD+T  ++F+    W++EL+   + +  + L G K+DL   
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-LEEHCKIYLCGTKSDLIEQ 120

Query: 131 -RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNG 189
            R L  V   D + FA++      ETS+    NV+  F +V           A +  S  
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV-----------AEDFVSRA 169

Query: 190 TASTLPSKGETINVKDDSSVLKRIGCC 216
                  KG  +  K +S       CC
Sbjct: 170 NNQMNTEKGVDLGQKKNS---YFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  108 bits (271), Expect = 1e-29
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 16  LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75
           LV++GD  VGK+ LL  +T N F  +   T+   ++   + +D K V+  +WDTAGQE Y
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAGQEDY 59

Query: 76  RAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR--- 131
             +    Y      L+ + V   A+F+NV  +W  E++ H  PN+ ++L+G K DLR   
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVK-HFCPNVPIILVGTKLDLRNDK 118

Query: 132 ---------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
                        V+ E G+A A++  ++ ++E SAL    V   F E
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEE 166

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  107 bits (269), Expect = 2e-29
 Identities = 49/139 (35%), Positives = 90/139 (64%)

Query: 36  NEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV 95
           + F+   +STIG++F +++L +D   V+ Q+WDTAGQER+R++  +Y R +  A++VYD+
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 96  TRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMET 155
           T   +F+N  +W++++      ++I+ L+GNKTDL  L  V+ E+G   A++ +  F ET
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHET 122

Query: 156 SALDATNVENAFTEVLTQI 174
           SA    N++  F ++  ++
Sbjct: 123 SAKAGHNIKVLFKKIAAKL 141

Length = 176

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  105 bits (264), Expect = 9e-29
 Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 15/165 (9%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K++++GD  VGK+ L++RF K+ F+   K+TIGV+F      +       Q+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRHL 133
           ++ I S YYRGA   ++V+D+T  A+ ++  +WL + L+E+   ++++ L+G K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL--- 118

Query: 134 VAVSTEDGKAFAEQESLYFME--------TSALDATNVENAFTEV 170
              S+    A  EQ+++             SAL   NV + F  V
Sbjct: 119 ---SSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  104 bits (262), Expect = 3e-28
 Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 2/164 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F +N F  E   TI   +  +   ID +     I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
            Y A+   Y R   G L VY +T  ++F+ +  +  + LR      + ++L+GNK DL  
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              VST +G+  A+   + F+ETSA    NV+ AF E++ +I K
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRK 168

Length = 189

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  104 bits (261), Expect = 3e-28
 Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   ++  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           ++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GNK D++  
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 118

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
                     F  +++L + E SA    N E  F
Sbjct: 119 -RKVKPKQITFHRKKNLQYYEISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  100 bits (252), Expect = 8e-27
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 4/165 (2%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F +  F      TI   F ++ +    +    +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRH 132
           Y  +   Y  G  G +LVY VT   +F+ V + + +  L      ++ ++L+GNK+DL  
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
              VS E+GK  AE     F+E+SA +  NVE AF  ++ +I K+
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKV 165

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  100 bits (250), Expect = 8e-27
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++  +  +++   D + + M L+GNK DL  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              VST  G+  A+   + ++ETSA     VE AF  ++ +I
Sbjct: 121 RT-VSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 99.7 bits (249), Expect = 2e-26
 Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 6/162 (3%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+ ++G SGVGKS L  RF    F  E +  +   + +R + ID + V  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 75  YRA--ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREH--TDPNIIVMLIGNKTDL 130
                      R A G +LVY +T  ++F  V + L+ +RE    D  I V+L+GNK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSA-LDATNVENAFTEVL 171
            H   VSTE+G+  A +    F E SA  +   V+N F E+ 
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELC 161

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 99.1 bits (247), Expect = 3e-26
 Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 5/164 (3%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +N F      TI   +  + + ID +    +I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQ-VEIDGRQCDLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
           ++ A+   Y +   G LLVY VT  A+   +G  LRE  LR     N+ ++L+GNK DL 
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLE 119

Query: 132 HLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQI 174
               VS EDG + ++Q     F ETSA   TNV+  F +++ QI
Sbjct: 120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  100 bits (250), Expect = 3e-26
 Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 4/173 (2%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTAGQ 72
            K+V++GD   GK++L+ RF +  F    K TIG++F +R + +  +  V  Q+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWL---RELREHTDPNIIVMLIGNKTD 129
           +    +   Y  GA    LVYD+T   +F+N+  WL   +++ E ++    ++L+GNKTD
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA 182
           L H   V+ E    FA++  +  +  SA     V   F  +  ++  +   +A
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQA 173

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 97.6 bits (243), Expect = 8e-26
 Identities = 53/163 (32%), Positives = 90/163 (55%), Gaps = 4/163 (2%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F    F  +   TI  +F  + + +D+     +I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
           ++ ++   Y +   G ++VY +    TFQ++ + +R+  +R      + ++L+GNK DL 
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
               VS+ +G+A AE+    FMETSA   T V   F E++ Q+
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 97.6 bits (243), Expect = 9e-26
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F +  F  +   TI   +  + + +D +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
           ++ A+   Y +   G +LVY +T  +TF ++   LRE  LR     ++ ++L+GNK DL 
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLE 119

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
               V  E G+  A Q    F+ETSA    NV   F +++ QI
Sbjct: 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 98.7 bits (246), Expect = 1e-25
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 25/165 (15%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVE-----FATRSLRIDNKVVKAQIWD 68
           FKLV++GD G GK+  + R    EF  + + TIGVE     F T   +I     +   WD
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYCWD 68

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQE++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GNK 
Sbjct: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKV 127

Query: 129 DLRHLVAVSTEDGKAFAEQ------ESLYFMETSALDATNVENAF 167
           D++        + +  A+Q      ++L + E SA    N E  F
Sbjct: 128 DVK--------NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Length = 219

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 96.5 bits (240), Expect = 3e-25
 Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F +  F  +   TI  +   + + +D +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
           ++ A+   Y +   G  LVY +T   +F ++ + LRE  LR     ++ ++L+GNK DL 
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDL-QDLREQILRVKDTEDVPMILVGNKCDLE 119

Query: 132 HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
               VS E+G+  A Q  +  F+ETSA    NV+  F +++ QI
Sbjct: 120 DERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 97.0 bits (242), Expect = 4e-25
 Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN-KVVKAQIWDT 69
           D   K+V++GD G GK+ LL  + +  F  E   T+  E    +L++ N K+++  +WDT
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDT 59

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKT 128
           AGQE Y  +    Y      L+ Y V    +  NV  +W  E+  H  P   ++L+G KT
Sbjct: 60  AGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGLKT 118

Query: 129 DLR------------HLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQIY 175
           DLR             L  V+ E G++ A+      ++E SA    NV+  F   +    
Sbjct: 119 DLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVAL 178

Query: 176 K 176
            
Sbjct: 179 S 179

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 94.0 bits (234), Expect = 3e-24
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 16/167 (9%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K VL+GD  VGK++L+  +T N +  E   T    F+   L +D K V+ Q+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVL-VDGKPVRLQLCDTAGQDE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL 133
           +  +    Y      LL + V   ++FQN+  +W+ E+R+H +P   ++L+G + DLR  
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTD 119

Query: 134 V------------AVSTEDGKAFAEQ-ESLYFMETSALDATNVENAF 167
           V             VS    KA AE+  +  ++E SAL   N++  F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 93.4 bits (232), Expect = 5e-24
 Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 12/169 (7%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +K+V++G  GVGKS +  +F  + F      TI   + T+  RIDN+     I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQA 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE------HTDPNIIVMLIGNK 127
            + A+   Y R   G ++ Y VT   +FQ       E +E       T+ +I ++L+GNK
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEA----SEFKELITRVRLTE-DIPLVLVGNK 116

Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            DL     V+TE+G+  A + +  F ETSA     +++AF  ++ +I +
Sbjct: 117 VDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRR 165

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 93.6 bits (233), Expect = 1e-23
 Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 11/158 (6%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKL+L+GD GVGK+  + R    EF  +   T+GVE        +   +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           ++  +   YY     A++++DVT   T++NV  W R++    + NI ++L+GNK D    
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVD---- 124

Query: 134 VAVSTEDGKA----FAEQESLYFMETSALDATNVENAF 167
             V     KA    F  +++L + + SA    N E  F
Sbjct: 125 --VKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPF 160

Length = 215

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 92.2 bits (229), Expect = 1e-23
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 5/161 (3%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKN--EFNLESKSTIGVEFATRSLRIDN--KVVKAQIWDTA 70
           +  ++GD  VGKS L+  F  +   F      T G +   +++ + +    V+  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTD 129
           GQE +  +    +       +VYDVT   +F N  RW+  +R H+   +   +L+GNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
           L     V     +A A+  +L F ETSA +    E  F  +
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 86.7 bits (215), Expect = 1e-21
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 13/165 (7%)

Query: 17  VLIGDSGVGKSNLLSRFTKNEFNLESK---STIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           V++G  GVGKS+LL+     E    S    +T   +       +D   VK  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 74  RY-----RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
            +       +     RGA   LLV D T   + ++    +          II+  +GNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPIIL--VGNKI 116

Query: 129 DLR-HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172
           DL            +  A+   +   E SA     V+  F +++ 
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 86.4 bits (214), Expect = 2e-21
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +++V+ G  GVGKS+L+ RF K  F      TI   +  + +     +   QI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSH 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG---RWLRELREHTDPNIIVMLIGNKTDL 130
           ++ A+           +LVY +T   + + +      + E++ +    I +ML+GNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171
                VS+ +G A A   +  FMETSA    NV+  F E+L
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 85.1 bits (210), Expect = 2e-20
 Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 7/151 (4%)

Query: 19  IGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI 78
           +GD G GK+  + R    EF  +  +T+GVE        +   ++  +WDTAGQE++  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 79  TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--RHLVAV 136
              YY     A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R + A 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKDRKVKAK 119

Query: 137 STEDGKAFAEQESLYFMETSALDATNVENAF 167
           S      F  +++L + + SA    N E  F
Sbjct: 120 SI----TFHRKKNLQYYDISAKSNYNFEKPF 146

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 82.8 bits (205), Expect = 6e-20
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 10/168 (5%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+ L+GD+ +GK++L+ ++ + EF+ E   T+GV F  +++ I    +   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL---- 130
           +  +     + AV  L ++D+TR +T  ++  W R+ R      I + L+G K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYDLFADL 120

Query: 131 -RHLVAVSTEDGKAFAE--QESLYFMETSALDATNVENAFTEVLTQIY 175
                   T+  + +A+  +  L F   S   + NV+  F  VL +++
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIF--CSTSHSINVQKIFKFVLAKVF 166

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 83.0 bits (205), Expect = 1e-19
 Identities = 61/218 (27%), Positives = 98/218 (44%), Gaps = 41/218 (18%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+VL+GD  VGK++LL R+ +  F  ++ ST+G  F  +     N      IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQWGPYN----ISIWDTAGREQ 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
           +  + S Y RGA   +L YDV+   + + +      L +  + + +  ++GNK DL    
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 135 A-------------------VSTEDGKAFAEQ---------------ESLYFMETSALDA 160
           A                   V+ ED KAF ++               E + F ETSA   
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCF-ETSAKTG 175

Query: 161 TNVENAFTEVLTQIYK-IVSKRAVEAGSNGTASTLPSK 197
            NV+  F  +   +   I+++RA    + GT +    K
Sbjct: 176 YNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPK 213

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 80.2 bits (198), Expect = 5e-19
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR  
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 120

Query: 133 -----------LVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                      L  ++   G A A E  ++ ++E SAL    ++  F E +
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 171

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 80.3 bits (198), Expect = 7e-19
 Identities = 60/182 (32%), Positives = 89/182 (48%), Gaps = 15/182 (8%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK++LL  FT  EF  E   T+   + T   R+D K V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL 133
           Y  +    Y  A   L+ + +    + +NV  +W+ E+R +  PN+ V+L+G K DLR  
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQE 120

Query: 134 VA----------VSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA 182
                       V  +  K  A    +  +ME SAL    V++ F E  T+   +V K  
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF-EAATRAALLVRKSG 179

Query: 183 VE 184
            E
Sbjct: 180 KE 181

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 80.4 bits (198), Expect = 8e-19
 Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 16/181 (8%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++ ++  +D + V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  + +  Y      ++ + +   ++++NV  +W  E+  H  PN+ ++L+G K DLR+ 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRND 122

Query: 133 -----------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
                         ++ + G A A+Q  ++ ++E SAL+   V+  F E +  +      
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPI 182

Query: 181 R 181
           +
Sbjct: 183 K 183

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 79.5 bits (196), Expect = 1e-18
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V++GD   GK++LL+ FT+  F    + T+  E     + +D   V+  +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR-- 131
           +  + S  Y      +L + V    + +NV  +WL E+R H  P + ++L+  K DLR  
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKCDLREP 119

Query: 132 ------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
                     +S E+G A A++  +  ++E SA     V  AFTE
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTE 164

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 79.4 bits (196), Expect = 1e-18
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+A AE+   + ++E SA     V   F
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 78.6 bits (194), Expect = 2e-18
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+VL+GDS  GK+ LL  F K+ F      T+  E  T S  +D + ++  +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           Y  +    Y  +   L+ +D++R  T  +V  +W  E+RE   PN  V+L+G K+DLR  
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLRTD 120

Query: 134 VA------------VSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLT 172
           ++            VS E G+  A+Q  +  ++E SA  + N      E+ T
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMAT 172

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 79.4 bits (196), Expect = 3e-18
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 1/162 (0%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +++VL+GDSGVGKS+L + FT   +   +    G +   R++ +D +     ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKTDLRH 132
               +  +  +     ++VY VT  ++F+       +LR      +I ++L+GNK+DL  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              VS ++G+A A      F+ETSA    NV+  F  ++ Q+
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQV 162

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 75.9 bits (187), Expect = 5e-18
 Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V+IGD G GKS+LLS+    EF  E     G   A  +L +D       IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGR---WLRELREHTDPNIIVMLIGNKT 128
            +     + + A   LLVYD+T   +   V R   WL  LR+     I V+L+GNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 76.8 bits (189), Expect = 1e-17
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 14/165 (8%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ +D   V   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    YRGA   LL + +   A+++NV  +W+ ELR H  P + ++L+G K DLR  
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELR-HYAPGVPIVLVGTKLDLRDD 120

Query: 133 ---------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAF 167
                     V ++T  G+   +Q  +  ++E S+    NV+  F
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 73.9 bits (181), Expect = 2e-16
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 16/162 (9%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F K+ F      T+  E  T S  ID + ++  +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLRHL 133
           Y  +    Y  +   L+ +D++R  T  +V + W  E++E   PN  ++L+G K+DLR  
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 124

Query: 134 VA------------VSTEDGKAFAEQESLY-FMETSALDATN 162
           V+            VS + G   A+Q     ++E SAL + N
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 72.2 bits (177), Expect = 1e-15
 Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 9/164 (5%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           +LV +G +GVGK+ L+ RF  + F  + + T+  E  ++   +    V   I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLR----ELREHTDPNIIVMLIGNKTDL 130
           + A+     +      LVY V    +F+ V R LR    E++E     I+V  +GNK D 
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKR-LREEILEVKEDKFVPIVV--VGNKIDS 116

Query: 131 RHLVAVSTEDGKAFAEQE-SLYFMETSALDATNVENAFTEVLTQ 173
                V   D  +  E + +  F+E SA D  NV   F E+L Q
Sbjct: 117 LAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 70.3 bits (172), Expect = 3e-15
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 16/171 (9%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120

Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E G+  A + +++ ++E SAL    ++N F E +
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 70.4 bits (172), Expect = 3e-15
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 16/176 (9%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +  + F  E   T+   +A  S+ +  K     ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQE 59

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + V   A+FQNV   W+ EL+E+  PN+  +LIG + DLR 
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLRD 118

Query: 132 ---------HL--VAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIY 175
                     +    ++ E G+  A++  +  ++E SAL    ++  F E +  I 
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 68.9 bits (169), Expect = 8e-15
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 14/158 (8%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTAGQE 73
           KL+L+G  GVGK++L  +    +F+ +  ST G+      +   + K ++  +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 74  RYRA-----ITS-AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
            Y A     +TS + Y      LLV+D+        V  WLR++ +       V+L+G  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQI-KAFGGVSPVILVGTH 115

Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVEN 165
            D      +  +                S  +   +  
Sbjct: 116 IDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 30/169 (17%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKS-----TIGVEFATRSLRIDNKVVKAQIWDT 69
           ++VLIGD GVGKS+L+      EF           TI  +          + V   I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVT-------PERVPTTIVDT 56

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKT 128
           + + + RA  +A  R A    LVY V R +T + +  +WL  +R      + ++L+GNK+
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKS 115

Query: 129 DLRHLVAVSTEDGKAFAEQESLYFM----------ETSALDATNVENAF 167
           DLR          +A  E+E L  M          E SA    NV   F
Sbjct: 116 DLR------DGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 64.3 bits (156), Expect = 1e-12
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 16/158 (10%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLVL+GD   GK+ +L    K+ +      T+  E  T  L  + + V+  +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQN-VGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           Y  +    Y  +   LL +D++R   F + + +W  E+ ++  P+  ++LIG KTDLR  
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKTDLRTD 132

Query: 134 VA------------VSTEDGKAFAEQ-ESLYFMETSAL 158
           ++            +S E G A A+Q  +  ++E SA 
Sbjct: 133 LSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAF 170

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           +++++G  G GK+ +L +    E    +  TIG  F   ++   N  VK  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVV-TTIPTIG--FNVETVEYKN--VKFTVWDVGGQDK 55

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDLRHL 133
            R +   YY    G + V D +     +     L +L    +     +LI  NK DL   
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGA 115

Query: 134 VAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQ 173
           +  S E  +     ES+     +    SA+    ++     ++ Q
Sbjct: 116 LTES-ELIELL-GLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 27/215 (12%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V++GD+  GK+ LL  F K+ +  ES      E  T S  ID   ++  +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYP-ESYVPTVFENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y  +   L+ +D++R  T  +V  +W  E +E   PN  ++L+G K D+R  
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKLVLVGCKLDMRTD 120

Query: 132 ----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATN-VENAF--TEVLT----- 172
                      L+ V+ E G   A Q  ++ ++E S+  + N V + F  T + +     
Sbjct: 121 LSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREH 180

Query: 173 -QIYKIVSKRAVEAGSNGTASTLPSKGETINVKDD 206
             + +  S+R ++  S       P    T  ++ D
Sbjct: 181 PSLKRSTSRRGLKRISQ--QPLRPVTENTPEIRKD 213

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 13/165 (7%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +++V++G S VGK+ ++SRF    F  +   TI  +F  +   I  +V +  I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 74  RYRAITS-AYYRGAVGALLVYDVTRHATFQNVGRWLRELRE---------HTDPNIIVML 123
            + A+   +   G V  +LV+ +    +F+ V R   ++ E           +  I +++
Sbjct: 60  PFPAMRRLSILTGDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI 118

Query: 124 IGNKTDLRHLVAVSTED-GKAFAEQESLYFMETSALDATNVENAF 167
            GNK D      V  ++  +     E+  + E SA   +N++  F
Sbjct: 119 CGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 17/177 (9%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN---KVVKAQIWDTA 70
             +V++G    GK+ +L R   NEF + +  T G  F T  +++     K V    WD  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVG 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL-REHTDPNIIVMLIGNKTD 129
           GQE+ R +  +Y R   G + V D       +     L ++ +   +  + V+++ NK D
Sbjct: 61  GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQD 120

Query: 130 LRHLVAVSTEDGKAFAEQE----SLYFME-TSALDATNVENAFTEVLTQIYKIVSKR 181
           L + + VS E  K  A  E    + + ++   A+          E L ++Y+++ KR
Sbjct: 121 LPNALPVS-EVEKLLALHELSSSTPWHVQPACAIIG----EGLQEGLEKLYEMILKR 172

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-----DNKVVKAQIWDT 69
           K++++GDSGVGKS+L+    KN+       T+G     R         + K    ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 70  AGQ----ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE 110
            G     E  ++  + +Y    G + V+D+T   + QN+ RW  E
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLE 106

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 16  LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75
           + L+G    GK+ L++     +F+ ++  T+G  F  R +   N  +K  +WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 76  RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDL 130
           R++   Y RG    + V D       +     L +L E      I +L+ GNK DL
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 50.4 bits (120), Expect = 8e-08
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 38/191 (19%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKST--------------IGVEFATRSLRID 58
             K V++GD+ VGK+ L+     N+   + +                +  E   RS  + 
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 59  NKV-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGR-WLRELREHTD 116
           + V V  ++WDT G +  +    AY R  V  LL + +    + +NV   W  E+R    
Sbjct: 62  DGVSVSLRLWDTFG-DHDKDRRFAYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIRHFC- 118

Query: 117 PNIIVMLIGNKTDLRH--LVAVST-----------------EDGKAFAEQESLYFMETSA 157
           P + V+L+G K DLR+  L  V+                  E G+A A++  + + ETS 
Sbjct: 119 PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSV 178

Query: 158 LDATNVENAFT 168
           +    V++ F 
Sbjct: 179 VTQFGVKDVFD 189

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEF----------ATRSLRIDNKVVK- 63
           +++++GDSGVGKS+L+    K         TIG              + S  I     + 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 64  --AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE 113
              ++WD +G ERY+   S +Y    G + V+D+++  T  ++ +W  E+  
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAA 134

Length = 334

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 19/164 (11%)

Query: 17  VLIGDSGVGKSNLLSRFTKNEFNLESKS--------TIGVEFATRSLRIDNKVVKAQIWD 68
           +++G    GK+  L + TK +F+   K         T+G+   T    I+    +   WD
Sbjct: 3   LILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGT----IEVGKARLMFWD 57

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNK 127
             GQE  R++   YY  + G + V D T    F        ++  +     + ++++ NK
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANK 117

Query: 128 TDLRHLVAVST-----EDGKAFAEQESLYFMETSALDATNVENA 166
            DL   ++V+      +D  A   +        SAL+   VE  
Sbjct: 118 QDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG--VEFATRSLRIDNKVVKAQIWDTAG 71
           +K++++G    GK+ +L +F   E  + +  TIG  VE       I  K ++  +WD  G
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEV-VHTSPTIGSNVE------EIVYKNIRFLMWDIGG 68

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDL 130
           QE  R+  + YY      +LV D T           L ++  H D    V+L+  NK DL
Sbjct: 69  QESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128

Query: 131 R 131
           +
Sbjct: 129 K 129

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E  + +  TIG  F   ++   N  VK  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEI-VTTIPTIG--FNVETVTYKN--VKFTVWDVGGQE 69

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLR 131
             R +   Y+      + V D       +     L   L E    +  ++++ NK DL 
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLP 128

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           +++L+G    GKS LL +    E  + +  T+G       L    K +   +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAEL-VTTIPTVGFNVEMLQL---EKHLSLTVWDVGGQEK 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDL 130
            R +   Y     G + V D +  A      + L+  L+      + V+L+ NK DL
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 20/130 (15%)

Query: 15  KLVLIGDSGVGKSNLL------------SRFTKNEFNLESKSTIGVEFATRSLRIDNKVV 62
           K+V+IG  G GK+  +            +  +      +  +T+ ++F   S+ +D    
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDEDT- 68

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM 122
              ++ T GQER++ +     RGAVGA+++ D +R  TF      + +       N I +
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE--IIDFLTSR--NPIPV 124

Query: 123 LIG-NKTDLR 131
           ++  NK DL 
Sbjct: 125 VVAINKQDLF 134

Length = 187

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 37/177 (20%)

Query: 16  LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVE-----FATRSL---RIDNKVVKAQIW 67
           LV+ G   VGKS+L+++ T+ +           E     F T+SL     D K ++ Q+ 
Sbjct: 3   LVIAGYPNVGKSSLVNKLTRAK----------PEVAPYPFTTKSLFVGHFDYKYLRWQVI 52

Query: 68  DTAG------QER----YRAITS-AYYRGAVGALLVYDVTRHA--TFQNVGRWLRELREH 114
           DT G      +ER     +AIT+ A+ R AV  L   D +     + +      +E++  
Sbjct: 53  DTPGILDRPLEERNTIEMQAITALAHLRAAV--LFFIDPSETCGYSIEEQLSLFKEIKPL 110

Query: 115 TDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171
            +  +IV+L  NK DL     +S  + +   E+E    ++ S L    V+    +  
Sbjct: 111 FNKPVIVVL--NKIDLLTEEDLS--EIEKELEKEGEEVIKISTLTEEGVDELKNKAC 163

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 28/142 (19%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD----- 68
            ++ ++G  GVGK+ ++ +F   EF  E   T        ++ +  +V    I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 69  ----TAGQE----RYRAI--TSAYYRGAVGALLVYDVTRHATFQNVGRWLR----ELREH 114
               TAGQE    R+R +  + A+       +LVYD+    +F  V + LR    E R  
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSRAF-------ILVYDICSPDSFHYV-KLLRQQILETRPA 112

Query: 115 TDPNIIVMLIGNKTDL-RHLVA 135
            +    ++++GNK D  RH  A
Sbjct: 113 GNKEPPIVVVGNKRDQQRHRFA 134

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           ++V +G  G GK+ +L +  ++EF ++   TIG    T    ++ K +K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF-MQPIPTIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 75  YRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
            R +   YY      + V D + R    +      + L E    + ++++  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115

Query: 134 VAV 136
           ++V
Sbjct: 116 LSV 118

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    +  K +   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGES-VTTIPTIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWL-RELREHTDPNIIVMLIGNKTDL 130
            R +   YY    G + V D             L R L E    + ++++  NK DL
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 12/136 (8%)

Query: 16  LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75
           ++++G  G GK++LL   +          T G      S+ I  +    ++ +  G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN----SVAIPTQDAIMELLEIGGSQNL 57

Query: 76  RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL---RH 132
           R     Y  G+ G + V D           + L +L +H  P++ ++++ NK DL   R 
Sbjct: 58  RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH-PPDLPLVVLANKQDLPAARS 116

Query: 133 LVAVSTEDGKAFAEQE 148
           +     E  K    + 
Sbjct: 117 V----QEIHKELELEP 128

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 18/123 (14%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTI-GVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +++++G    GK+ +L +    +    S +TI  V F   ++   N  VK  +WD  GQ+
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTYKN--VKFNVWDVGGQD 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWL------RELREHTDPNIIVMLIGNK 127
           + R +   YY G  G + V D           + L      RE+R     + ++++  NK
Sbjct: 65  KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMR-----DALLLVFANK 119

Query: 128 TDL 130
            DL
Sbjct: 120 QDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 41/189 (21%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFA--TR-----SLRIDNKVVKAQI 66
            K+V+IG   VGKS+LL+        L     I  + A  TR      + ++   V+  +
Sbjct: 218 LKVVIIGRPNVGKSSLLNAL------LGRDRAIVTDIAGTTRDVIEEDINLNGIPVR--L 269

Query: 67  WDTAGQ-------ERY---RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD 116
            DTAG        ER    RA  +     A   L V D ++    ++       L E   
Sbjct: 270 VDTAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLDKED-----LALIELLP 322

Query: 117 PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
               ++++ NK DL     VS  + ++         +  SA     ++     +   I +
Sbjct: 323 KKKPIIVVLNKADL-----VSKIELESEKLANGDAIISISAKTGEGLD----ALREAIKQ 373

Query: 177 IVSKRAVEA 185
           +  K     
Sbjct: 374 LFGKGLGNQ 382

Length = 454

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 10/118 (8%)

Query: 16  LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75
           L+ +G    GK+ L+S        +  K    V F    LR+D   V   I+D  G   +
Sbjct: 2   LLTVGLDNAGKTTLVSALQGE---IPKKVAPTVGFTPTKLRLDKYEV--CIFDLGGGANF 56

Query: 76  RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII---VMLIGNKTDL 130
           R I   YY  A G + V D +     Q V   LREL +H  P +    ++++ NK D 
Sbjct: 57  RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQH--PRVSGKPILVLANKQDK 112

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 48/205 (23%)

Query: 6   PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNE----FNLESKST---IGVEFATRSLRID 58
            +EE     K+ +IG   VGKS+L++     E     ++   +T   I +EF       D
Sbjct: 171 EEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG-TTRDSIDIEF-----ERD 224

Query: 59  NKVVKAQIWDTAG----------QERY------RAITSAYYRGAVGALLVYDVTRHATFQ 102
            +     + DTAG           E+Y      +AI  A        LLV D T   + Q
Sbjct: 225 GRKYV--LIDTAGIRRKGKITESVEKYSVARTLKAIERADV-----VLLVIDATEGISEQ 277

Query: 103 NVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFME------TS 156
           ++ R    + E     +IV+   NK DL      + E+ K    ++ L F++       S
Sbjct: 278 DL-RIAGLIEEAGRGIVIVV---NKWDLVEEDEATMEEFKKKLRRK-LPFLDFAPIVFIS 332

Query: 157 ALDATNVENAFTEVLTQIYKIVSKR 181
           AL    ++  F  +  +IY+  ++R
Sbjct: 333 ALTGQGLDKLFEAIK-EIYECATRR 356

Length = 444

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    ++ K +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73

Query: 75  YRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
            R +   Y++   G + V D   R    +      R L E    + ++++  NK DL + 
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133

Query: 134 VAVS 137
           +  +
Sbjct: 134 MNAA 137

Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
PLN03118	211	Rab family protein; Provisional	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.98
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
PTZ00099	176	rab6; Provisional	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
PLN00023	334	GTP-binding protein; Provisional	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
KOG1673	205	consensus Ras GTPases [General function prediction	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.9
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
PRK15494	339	era GTPase Era; Provisional	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
PRK12296	500	obgE GTPase CgtA; Reviewed	99.89
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.88
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.88
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.87
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.86
PRK00089	292	era GTPase Era; Reviewed	99.86
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.86
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.83
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.83
COG1159	298	Era GTPase [General function prediction only]	99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.83
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.82
PRK10218	607	GTP-binding protein; Provisional	99.82
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.81
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.81
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.81
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.81
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
COG2229	187	Predicted GTPase [General function prediction only	99.81
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.8
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.79
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.79
COG0486	454	ThdF Predicted GTPase [General function prediction	99.78
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.77
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.77
COG0218	200	Predicted GTPase [General function prediction only	99.76
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.76
PRK12735	396	elongation factor Tu; Reviewed	99.76
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.75
COG2262	411	HflX GTPases [General function prediction only]	99.75
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.75
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.75
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.74
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.74
CHL00071	409	tufA elongation factor Tu	99.73
COG1084	346	Predicted GTPase [General function prediction only	99.73
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.72
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.72
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.71
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.7
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.69
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.69
PLN03126	478	Elongation factor Tu; Provisional	99.69
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.69
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.69
COG0536	369	Obg Predicted GTPase [General function prediction	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.69
PRK00049	396	elongation factor Tu; Reviewed	99.68
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.68
PLN00043	447	elongation factor 1-alpha; Provisional	99.68
PRK13351	687	elongation factor G; Reviewed	99.68
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.68
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.66
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.66
PLN03127	447	Elongation factor Tu; Provisional	99.65
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.65
PTZ00141	446	elongation factor 1- alpha; Provisional	99.64
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.64
COG1163	365	DRG Predicted GTPase [General function prediction	99.64
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.63
KOG1145	683	consensus Mitochondrial translation initiation fac	99.63
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.63
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.62
PRK12739	691	elongation factor G; Reviewed	99.62
PRK09602	396	translation-associated GTPase; Reviewed	99.61
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.6
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.6
COG3596	296	Predicted GTPase [General function prediction only	99.59
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.58
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.58
PRK00007	693	elongation factor G; Reviewed	99.58
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.55
PRK09866	741	hypothetical protein; Provisional	99.55
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.55
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.53
PRK12740	668	elongation factor G; Reviewed	99.52
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.51
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.51
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.49
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.49
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.47
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.47
KOG0090	238	consensus Signal recognition particle receptor, be	99.47
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.47
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.46
PRK14845	1049	translation initiation factor IF-2; Provisional	99.46
PTZ00258	390	GTP-binding protein; Provisional	99.44
PRK13768	253	GTPase; Provisional	99.44
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.44
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.43
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.43
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.42
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.41
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.4
PRK09601	364	GTP-binding protein YchF; Reviewed	99.39
PRK07560	731	elongation factor EF-2; Reviewed	99.37
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.37
PTZ00416	836	elongation factor 2; Provisional	99.35
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.35
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.33
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.33
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.33
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.32
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.31
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.3
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.29
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.29
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.28
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.28
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.25
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.23
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.23
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.17
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.17
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.17
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.16
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.16
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.15
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.14
KOG0410	410	consensus Predicted GTP binding protein [General f	99.14
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.13
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.11
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.09
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.07
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.05
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.04
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.04
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.04
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.03
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.02
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.02
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.01
PRK12289	352	GTPase RsgA; Reviewed	99.0
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.98
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.97
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.96
PRK12288	347	GTPase RsgA; Reviewed	98.93
PRK00098	298	GTPase RsgA; Reviewed	98.91
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.9
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.89
KOG2486	320	consensus Predicted GTPase [General function predi	98.88
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.81
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.79
KOG0460	449	consensus Mitochondrial translation elongation fac	98.77
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.77
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.73
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.7
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.69
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.65
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.64
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.64
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.62
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.62
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.62
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.6
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.58
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.57
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.57
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.57
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.57
KOG1143	591	consensus Predicted translation elongation factor	98.56
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.55
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.55
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.54
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.53
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.52
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.52
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.51
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.47
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.47
COG1161	322	Predicted GTPases [General function prediction onl	98.47
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.46
PRK01889	356	GTPase RsgA; Reviewed	98.45
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.41
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.39
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.39
PRK13796	365	GTPase YqeH; Provisional	98.39
cd03112	158	CobW_like The function of this protein family is u	98.35
COG3523	1188	IcmF Type VI protein secretion system component Va	98.3
PRK10416	318	signal recognition particle-docking protein FtsY;	98.29
PRK12288	347	GTPase RsgA; Reviewed	98.28
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.28
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.26
PRK12289	352	GTPase RsgA; Reviewed	98.25
PRK14974	336	cell division protein FtsY; Provisional	98.24
COG1162	301	Predicted GTPases [General function prediction onl	98.23
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.22
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.22
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.16
COG1162	301	Predicted GTPases [General function prediction onl	98.15
PRK13796	365	GTPase YqeH; Provisional	98.15
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.12
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.11
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.09
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.08
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.03
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.0
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.0
PRK00098	298	GTPase RsgA; Reviewed	97.96
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.96
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.93
PRK13695	174	putative NTPase; Provisional	97.93
COG0523	323	Putative GTPases (G3E family) [General function pr	97.92
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.89
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.88
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.88
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.88
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.83
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.78
cd03114	148	ArgK-like The function of this protein family is u	97.74
KOG2484	435	consensus GTPase [General function prediction only	97.74
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.73
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.71
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.7
TIGR00959	428	ffh signal recognition particle protein. This mode	97.7
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.67
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.67
PRK10867	433	signal recognition particle protein; Provisional	97.64
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.64
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.64
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.62
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.58
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.58
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.52
KOG0099	379	consensus G protein subunit Galphas, small G prote	97.5
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.49
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.49
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.47
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.46
PF00004	132	AAA: ATPase family associated with various cellula	97.44
cd03111	106	CpaE_like This protein family consists of proteins	97.43
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.41
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.38
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.37
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.34
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.34
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.34
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.31
PRK08118	167	topology modulation protein; Reviewed	97.31
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.29
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.27
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.26
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.26
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.26
cd03110	179	Fer4_NifH_child This protein family's function is	97.24
PRK07261	171	topology modulation protein; Provisional	97.23
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.22
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.2
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.17
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.17
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.13
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.12
PRK10646	153	ADP-binding protein; Provisional	97.09
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.07
PRK04195	482	replication factor C large subunit; Provisional	97.07
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.07
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.05
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.04
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.02
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.02
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.02
PF05729	166	NACHT: NACHT domain	96.97
COG0802	149	Predicted ATPase or kinase [General function predi	96.94
PRK06217	183	hypothetical protein; Validated	96.94
PRK14738	206	gmk guanylate kinase; Provisional	96.93
PRK14737	186	gmk guanylate kinase; Provisional	96.92
KOG1533	290	consensus Predicted GTPase [General function predi	96.89
PRK03839	180	putative kinase; Provisional	96.87
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.85
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.85
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.84
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.84
smart00382	148	AAA ATPases associated with a variety of cellular	96.84
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.83
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.82
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.82
PRK14530	215	adenylate kinase; Provisional	96.81
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.8
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.8
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.78
cd02036	179	MinD Bacterial cell division requires the formatio	96.78
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.77
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.77
PRK01889	356	GTPase RsgA; Reviewed	96.75
PRK14532	188	adenylate kinase; Provisional	96.73
PRK13949	169	shikimate kinase; Provisional	96.72
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.72
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.72
PLN02200	234	adenylate kinase family protein	96.72
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.69
PRK14531	183	adenylate kinase; Provisional	96.69
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.69
COG1161	322	Predicted GTPases [General function prediction onl	96.68
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.67
KOG2203	772	consensus GTP-binding protein [General function pr	96.66
PRK00411	394	cdc6 cell division control protein 6; Reviewed	96.66
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.66
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.66
PTZ00088	229	adenylate kinase 1; Provisional	96.65
PLN03025	319	replication factor C subunit; Provisional	96.64
PRK02496	184	adk adenylate kinase; Provisional	96.64
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.62
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	96.61
PRK00625	173	shikimate kinase; Provisional	96.61
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.6

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-45  Score=258.93  Aligned_cols=176  Identities=49%  Similarity=0.833  Sum_probs=168.5

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA   86 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   86 (218)
                      ...+++.+||+|+|+.|+|||+|+.||..+.|.+.+..|+|+++..+++.++++.++++||||+|+++|+++...|++++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHH
Q 027824           87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVEN  165 (218)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~  165 (218)
                      +++|+|||+++.+||+.+..|+.++..+...++|.++||||+|+.+.+.++.++++.|+.+++++ |+|+||+++.+|++
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            99999999999999999999999999999899999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 027824          166 AFTEVLTQIYKIVSKRA  182 (218)
Q Consensus       166 ~~~~i~~~i~~~~~~~~  182 (218)
                      .|..|...+.+......
T Consensus       163 ~F~~la~~lk~~~~~~~  179 (205)
T KOG0084|consen  163 AFLTLAKELKQRKGLHV  179 (205)
T ss_pred             HHHHHHHHHHHhcccCC
Confidence            99999998877655443

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6e-42  Score=245.16  Aligned_cols=176  Identities=48%  Similarity=0.849  Sum_probs=169.2

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA   86 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   86 (218)
                      ..++++.+||+++|+++||||+|+.+|..+.|...+..|.|+++..+++.+++..+.+++|||.|++.|+.+...|+++|
T Consensus         6 ~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA   85 (207)
T KOG0078|consen    6 KEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA   85 (207)
T ss_pred             cCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      +++++|||+++..||+++..|+..+.++...++|.++||||+|+...+++..+.++++|.++|++|+||||++|.||++.
T Consensus        86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea  165 (207)
T KOG0078|consen   86 MGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA  165 (207)
T ss_pred             CeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence            99999999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 027824          167 FTEVLTQIYKIVSKRA  182 (218)
Q Consensus       167 ~~~i~~~i~~~~~~~~  182 (218)
                      |..|...++.......
T Consensus       166 F~~La~~i~~k~~~~~  181 (207)
T KOG0078|consen  166 FLSLARDILQKLEDAE  181 (207)
T ss_pred             HHHHHHHHHhhcchhh
Confidence            9999999997555543

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-42  Score=244.20  Aligned_cols=198  Identities=38%  Similarity=0.704  Sum_probs=173.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      ...+||+|+|..++|||||+-||..+.|.+...+|+|-.+..+.+.+++..+++.||||+|++.|.++.++|++++++.|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35699999999999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      +|||+++.+||..+..|+.++.....+++-+.++|||+||.+.+++..+++..++...++.|||+||+++.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999888888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCccC
Q 027824          171 LTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS  217 (218)
Q Consensus       171 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  217 (218)
                      .+.+.....+......       .-+++.-+...+  .....++||+
T Consensus       163 a~~lp~~~~~~~~~~~-------~~~~g~~l~~~~--~~~~~~~~C~  200 (200)
T KOG0092|consen  163 AEKLPCSDPQERQGLP-------NRRQGVDLNSNQ--EPARPSGCCA  200 (200)
T ss_pred             HHhccCcccccccccc-------ccccceecccCC--CCcCcCCcCC
Confidence            9988775544432100       011344444333  3344678885

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-41  Score=241.87  Aligned_cols=200  Identities=72%  Similarity=1.115  Sum_probs=186.7

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA   86 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   86 (218)
                      +.++++.+||+++|++++|||-|+.||..+.|..+...|+|+++....+.++++.++.+||||+|+++|+.....|++++
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA   87 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA   87 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      .+.++|||++.+.+|+++..|+.++..+...++++++|+||+||.+.+.+..++++.++...+..|+++||.+..+|++.
T Consensus        88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a  167 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA  167 (222)
T ss_pred             ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCC
Q 027824          167 FTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDD  206 (218)
Q Consensus       167 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (218)
                      |..++..+++...++.............+.++..+++...
T Consensus       168 F~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~  207 (222)
T KOG0087|consen  168 FERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPT  207 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccC
Confidence            9999999999999888777765433335667777777543

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-41  Score=236.65  Aligned_cols=183  Identities=50%  Similarity=0.851  Sum_probs=172.5

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      .+.+.+|++++|+.|+|||+|+.+|+...|.+.+..|.|+++..+.+.++++.++++||||+|++.++++...|++.+.+
T Consensus         2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G   81 (216)
T KOG0098|consen    2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG   81 (216)
T ss_pred             CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      +|+|||++++++|+.+..|+..+.++..++..+++++||+|+...++++.+++++|++++++.|+++||+++++|+++|.
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            99999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhcCCCCCC
Q 027824          169 EVLTQIYKIVSKRAVEAGSNGTA  191 (218)
Q Consensus       169 ~i~~~i~~~~~~~~~~~~~~~~~  191 (218)
                      .+...+++...........+.+.
T Consensus       162 nta~~Iy~~~q~g~~~~~~~~k~  184 (216)
T KOG0098|consen  162 NTAKEIYRKIQDGVFDDINESKG  184 (216)
T ss_pred             HHHHHHHHHHHhccccccccccc
Confidence            99999999877666555444433

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.9e-41  Score=230.03  Aligned_cols=170  Identities=46%  Similarity=0.779  Sum_probs=161.7

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      ..++..+||+++|.+|+|||||+.+|..+.|.+....|+|.++..+.+.+++..+++.||||+|++.|+.+.+.|++++.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            45678899999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      ++|+|||++.+++|..+..|++++.-+.. +++..++|+||+|...++.++-+++..|++++++.|+|+||++.++|...
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            99999999999999999999999987765 77888999999999889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027824          167 FTEVLTQIYKI  177 (218)
Q Consensus       167 ~~~i~~~i~~~  177 (218)
                      |+.+++++.+-
T Consensus       166 FeelveKIi~t  176 (209)
T KOG0080|consen  166 FEELVEKIIET  176 (209)
T ss_pred             HHHHHHHHhcC
Confidence            99999988764

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-41  Score=236.71  Aligned_cols=170  Identities=35%  Similarity=0.676  Sum_probs=160.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      .-..+||+++|+.++||||||.||+.+.|...|.+|+|+++..+++.+.+..+.+++|||+|++.|+++.+.|+++++++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            34459999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      |+|||+++..||++...|+..+...... ++.+++||||.||.+.+++..+++...++++++.|+++||+.|.||+.+|.
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr  178 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR  178 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence            9999999999999999999999888775 488899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027824          169 EVLTQIYKIVS  179 (218)
Q Consensus       169 ~i~~~i~~~~~  179 (218)
                      .|...+.....
T Consensus       179 rIaa~l~~~~~  189 (221)
T KOG0094|consen  179 RIAAALPGMEV  189 (221)
T ss_pred             HHHHhccCccc
Confidence            98887766543

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=6.5e-40  Score=246.50  Aligned_cols=210  Identities=69%  Similarity=1.088  Sum_probs=180.2

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA   86 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   86 (218)
                      ..+.++.+||+++|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.|||++|++.+..++..+++.+
T Consensus         6 ~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   85 (216)
T PLN03110          6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA   85 (216)
T ss_pred             ccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCC
Confidence            34566889999999999999999999999998888889999999888898999899999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      +++|+|||++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..++++.++..++++|+++||++|.|++++
T Consensus        86 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l  165 (216)
T PLN03110         86 VGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKA  165 (216)
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998876678999999999999888888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCccC
Q 027824          167 FTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS  217 (218)
Q Consensus       167 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  217 (218)
                      |++++..+.+....+...........+++.++..+.+.+.. ..++++|||
T Consensus       166 f~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~  215 (216)
T PLN03110        166 FQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINVADTS-GNNKRGCCS  215 (216)
T ss_pred             HHHHHHHHHHHhhccccccccCcccccCcCcCCcccccCcc-CCCCCCCcC
Confidence            99999999887665554444333333444566666664443 345677997

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.3e-40  Score=223.92  Aligned_cols=173  Identities=48%  Similarity=0.771  Sum_probs=165.3

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      .++++.++.+++|++|+|||+|+.+|..+.|..+|..|+|.++.++++.+++..+++.|||++|++.|+.+...++++.+
T Consensus         3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF  167 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (218)
                      ++++|||+++.+||.++..|+.++.... +..|-++|+||.|.++.+.+..++++.|+...|+.+||+|++++++++.+|
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence            9999999999999999999999998776 688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 027824          168 TEVLTQIYKIVSKR  181 (218)
Q Consensus       168 ~~i~~~i~~~~~~~  181 (218)
                      .-|.+++++...+.
T Consensus       162 ~cit~qvl~~k~r~  175 (198)
T KOG0079|consen  162 HCITKQVLQAKLRE  175 (198)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998887443

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=4.6e-39  Score=239.70  Aligned_cols=195  Identities=37%  Similarity=0.675  Sum_probs=169.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      +||+++|++|+|||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988888999988888888887 7789999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHH
Q 027824           93 YDVTRHATFQNVGRWLRELREHT----DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATNVENAF  167 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~  167 (218)
                      ||++++++|+.+..|+..+....    ..++|+++|+||+|+.....+..+++.++++..+ ..|+++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998886542    2578999999999998667788889999999988 689999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCcc
Q 027824          168 TEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC  216 (218)
Q Consensus       168 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  216 (218)
                      .+|++.+.+.+.......        ++.++..+..++...++|.++||
T Consensus       161 ~~l~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         161 RFLVKNILANDKNLQQAE--------TPEDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHhchhhHhhc--------CCCcccccccccceeccccCCCC
Confidence            999999877654443332        23335667777777778888999

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-40  Score=222.17  Aligned_cols=208  Identities=36%  Similarity=0.711  Sum_probs=185.8

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      +++..+||+++|+.|+|||+|+++|+.+.|++-...|+|+++..+++.+++..++++||||.|++.|+++...|++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            67789999999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      +|+|||++...+|+.+++|+.++..+....+.-|+|+||+|+.+.+++....+++|+......|+|+||++.++++.+|.
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            99999999999999999999999999988888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCccC
Q 027824          169 EVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS  217 (218)
Q Consensus       169 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  217 (218)
                      .+.-.+..........++...++....+.|..+.+-+--+. |-..||-
T Consensus       163 ~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~aqt-~~~~cc~  210 (213)
T KOG0095|consen  163 DLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYAQT-QLLTCCN  210 (213)
T ss_pred             HHHHHHHHHHHhccchhhccccCccccCCCCcccchhHHHH-HHhcccc
Confidence            99888877776666677776666666666666655544332 3357773

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.3e-38  Score=234.77  Aligned_cols=164  Identities=39%  Similarity=0.733  Sum_probs=152.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +.|+++|..|||||||+++|..+.|...+.+|.+.++....+.+++..+.+.+||++|++.|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46999999999999999999999998888899999998888899998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE-SLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      |++++++|+.+..|+..+......+.|+++|+||+|+...+++..+++.+++.+. ++.|++|||++|.||+++|.+++.
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887766578999999999999888889988999999885 789999999999999999999999


Q ss_pred             HHHHH
Q 027824          173 QIYKI  177 (218)
Q Consensus       173 ~i~~~  177 (218)
                      .+.+.
T Consensus       161 ~~~~~  165 (202)
T cd04120         161 DILKK  165 (202)
T ss_pred             HHHHh
Confidence            88765

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=2.2e-38  Score=232.85  Aligned_cols=167  Identities=37%  Similarity=0.700  Sum_probs=155.1

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      .+..+||+++|..|||||||+.+|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999988888878888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (218)
                      |+|||++++.+|+.+..|+..+.... +++|+|||+||.|+.+.+.+..++++.+++..+++|++|||++|.||+++|.+
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999997765 68999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027824          170 VLTQIYKI  177 (218)
Q Consensus       170 i~~~i~~~  177 (218)
                      |++.+...
T Consensus       162 l~~~i~~~  169 (189)
T cd04121         162 LARIVLMR  169 (189)
T ss_pred             HHHHHHHh
Confidence            99877653

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=4.2e-39  Score=224.45  Aligned_cols=172  Identities=35%  Similarity=0.669  Sum_probs=160.6

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      .+...+||+++|++|+|||||.++|.+..|...+..|+|.++..+.+.+++..+.++||||+|+++|.++...+++++|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCC--CcccCHHHHHHHHHHc-CCeEEEEccCCCC
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRH--LVAVSTEDGKAFAEQE-SLYFMETSALDAT  161 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~  161 (218)
                      .++|||++++.+|+.+..|..++.....    ...|+||+|||+|+.+  .++++...+++|+... +++|||+|||+..
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999999977655    4589999999999976  3889999999999984 6899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 027824          162 NVENAFTEVLTQIYKIVSK  180 (218)
Q Consensus       162 ~v~~~~~~i~~~i~~~~~~  180 (218)
                      ||++.|..+.+.+++....
T Consensus       165 NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cHHHHHHHHHHHHHhccch
Confidence            9999999999999887654

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-39  Score=215.89  Aligned_cols=176  Identities=40%  Similarity=0.740  Sum_probs=167.2

Q ss_pred             CCCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcC
Q 027824            6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRG   85 (218)
Q Consensus         6 ~~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   85 (218)
                      .++.+++.+|++++|+..+|||||+.++.+..|...+..|.|+++..+++.-..+.+.++||||.|++.|+.+...++++
T Consensus        14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg   93 (193)
T KOG0093|consen   14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG   93 (193)
T ss_pred             ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence            46789999999999999999999999999999999999999999999998888889999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027824           86 AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVEN  165 (218)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (218)
                      ++++|+|||+++.++|..+..|...+..+.-.++|+|+++||+|+.+++.++.+.++.++.++|+.|||+||+.|.+|+.
T Consensus        94 amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~  173 (193)
T KOG0093|consen   94 AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQ  173 (193)
T ss_pred             cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence            99999999999999999999999999888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 027824          166 AFTEVLTQIYKIVSKR  181 (218)
Q Consensus       166 ~~~~i~~~i~~~~~~~  181 (218)
                      +|..++..+.+...+.
T Consensus       174 ~Fe~lv~~Ic~kmses  189 (193)
T KOG0093|consen  174 VFERLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999887765543

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-38  Score=214.56  Aligned_cols=188  Identities=45%  Similarity=0.777  Sum_probs=177.2

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA   86 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   86 (218)
                      .+.+|+.+|++++|+.|.|||+|+++|..+.|......|+|+++..+.+.+.++.++++||||.|++.|++..+.|++++
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      .+.++|||++++++|+.+..|+..+.....+++-+|+++||.|+.++++++..++..|+.+..+.+.|+|+.+|++|++.
T Consensus        83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA  162 (214)
T ss_pred             cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcCCCCCCCcC
Q 027824          167 FTEVLTQIYKIVSKRAVEAGSNGTASTL  194 (218)
Q Consensus       167 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~  194 (218)
                      |-.....++......+..+..-++..+=
T Consensus       163 Fl~c~~tIl~kIE~GElDPer~gsGIQY  190 (214)
T KOG0086|consen  163 FLKCARTILNKIESGELDPERMGSGIQY  190 (214)
T ss_pred             HHHHHHHHHHHHhhcCCCHHHccccccc
Confidence            9999999998888777776666655443

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=5.1e-37  Score=231.20  Aligned_cols=177  Identities=27%  Similarity=0.451  Sum_probs=154.8

Q ss_pred             CCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhh
Q 027824            1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITS   80 (218)
Q Consensus         1 m~~~~~~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   80 (218)
                      |++-+-..+....+||+++|+.+||||+|+.+|..+.|...+.+|.+.++ ...+.+++..+.+.||||+|++.|..++.
T Consensus         1 ~~~~~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~   79 (232)
T cd04174           1 MKERRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRP   79 (232)
T ss_pred             CcccccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence            44333344556689999999999999999999999999989989987766 44677889999999999999999999999


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHH
Q 027824           81 AYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH------------LVAVSTEDGKAFAEQ  147 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~  147 (218)
                      .+++++|++|+|||++++.+|+.+ ..|+..+.... ++.|+|+|+||+|+..            .+.+..++++++++.
T Consensus        80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~  158 (232)
T cd04174          80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ  158 (232)
T ss_pred             HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence            999999999999999999999985 78999998765 5789999999999964            367889999999999


Q ss_pred             cCC-eEEEEccCCCC-CHHHHHHHHHHHHHHHHh
Q 027824          148 ESL-YFMETSALDAT-NVENAFTEVLTQIYKIVS  179 (218)
Q Consensus       148 ~~~-~~~~~Sa~~~~-~v~~~~~~i~~~i~~~~~  179 (218)
                      +++ .|+||||++|. ||+++|..++..+++...
T Consensus       159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~  192 (232)
T cd04174         159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLS  192 (232)
T ss_pred             cCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence            998 69999999997 899999999998876533

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.2e-39  Score=217.67  Aligned_cols=211  Identities=32%  Similarity=0.574  Sum_probs=178.8

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA   86 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   86 (218)
                      ...+...|||+++|..-+|||||+-|++.+.|...+..|..-.+..+.+.+.+....+.||||.|++.|..+-+.|+++.
T Consensus         7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS   86 (218)
T KOG0088|consen    7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS   86 (218)
T ss_pred             ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence            34556789999999999999999999999999888888877777788888888899999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      +++++|||++|+++|+.+..|..++.......+-+++|+||+|+.+++.++..++..++...|+.|+++||+++.||.++
T Consensus        87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el  166 (218)
T KOG0088|consen   87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL  166 (218)
T ss_pred             CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence            99999999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCccC
Q 027824          167 FTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS  217 (218)
Q Consensus       167 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  217 (218)
                      |..+.....+....+.+..++-+....+...+..+.-...+.....++||+
T Consensus       167 Fe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC~  217 (218)
T KOG0088|consen  167 FESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCCR  217 (218)
T ss_pred             HHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCccC
Confidence            999999888887666655544443322223233332222233333456996

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=5.7e-37  Score=228.01  Aligned_cols=171  Identities=47%  Similarity=0.764  Sum_probs=155.5

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      +++.+||+++|++|+|||||+++|.+..+...+.+|.+.++....+..++..+.+.|||++|++.+..++..++++++++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            45679999999999999999999999998888889998888888888888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (218)
                      ++|||++++++|+.+..|+..+.... ...|++||+||+|+.+...+..+++..++...+++|+++||++|.|++++|++
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            99999999999999999999987654 67899999999999887777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 027824          170 VLTQIYKIVSKR  181 (218)
Q Consensus       170 i~~~i~~~~~~~  181 (218)
                      |...+++.....
T Consensus       162 l~~~~~~~~~~~  173 (199)
T cd04110         162 ITELVLRAKKDN  173 (199)
T ss_pred             HHHHHHHhhhcc
Confidence            999998765444

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.5e-38  Score=215.06  Aligned_cols=204  Identities=38%  Similarity=0.687  Sum_probs=173.8

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      ..+.++++++|++-+|||+|++.|+.+.+.+-..||.|++++...+.+ ++..+++++|||.|++.|+++...|+++.-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            457899999999999999999999999999999999999998877766 6778999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCc-EEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTD-PNII-VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      +++|||++++++|+.++.|+.+...... +..+ +.+|++|+||...++++.+++++++..+|..|+|+|+++|.||++.
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            9999999999999999999999887765 4444 5788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh--hhhhcCCCCCCCcCCCCCccccccCCCCCccccCccC
Q 027824          167 FTEVLTQIYKIVSK--RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS  217 (218)
Q Consensus       167 ~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  217 (218)
                      |..+.+.++....+  -..+.+-.+.+++-+.+-.......++    ++.|||
T Consensus       165 F~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P----~k~c~C  213 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQP----SKPCQC  213 (213)
T ss_pred             HHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCC----CCCCCC
Confidence            99999999888665  344555566665444433333333333    356654

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=2.1e-36  Score=223.61  Aligned_cols=164  Identities=45%  Similarity=0.760  Sum_probs=148.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      +||+++|++|+|||||+++|.++.+.. .+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988754 5667877777777788888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824           93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      ||++++++++.+..|+..+......++|+++|+||+|+...+.+..++++.++..++++|+++||++|.|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876668999999999999877777778888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027824          173 QIYKI  177 (218)
Q Consensus       173 ~i~~~  177 (218)
                      .+.+.
T Consensus       161 ~~~~~  165 (191)
T cd04112         161 ELKHR  165 (191)
T ss_pred             HHHHh
Confidence            88654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.6e-36  Score=227.33  Aligned_cols=187  Identities=30%  Similarity=0.511  Sum_probs=154.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|.+++|||||+++|+.+.+.. +.+|.+.++....+    ..+.+.|||++|++.|..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999864 46777766554433    4578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CcccCHHHHHHHHHHcC-----
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH-------------------LVAVSTEDGKAFAEQES-----  149 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~-----  149 (218)
                      |++++++|+.+..|+..+......++|+|+|+||+|+.+                   .+++..++++.++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888887766557799999999999975                   57888999999999876     


Q ss_pred             ---------CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCcc
Q 027824          150 ---------LYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC  216 (218)
Q Consensus       150 ---------~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  216 (218)
                               ++|+||||++|.||+++|..+++.++....+...+.+.           .+-.+.+...+.++++||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANR-----------TQGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhh-----------hhccccCCCcccCCCCCC
Confidence                     68999999999999999999999998876666543211           122333344555678898

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=3.7e-36  Score=221.86  Aligned_cols=165  Identities=47%  Similarity=0.795  Sum_probs=152.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998778899888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      |++++++|+.+..|+..+........|+++++||+|+.+...+..++++.++...+++|+++||+++.|++++|.++++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999987766678999999999998878888888889998889999999999999999999999998


Q ss_pred             HHHHH
Q 027824          174 IYKIV  178 (218)
Q Consensus       174 i~~~~  178 (218)
                      +.+..
T Consensus       161 ~~~~~  165 (188)
T cd04125         161 IIKRL  165 (188)
T ss_pred             HHHHh
Confidence            87643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=3.7e-36  Score=217.66  Aligned_cols=164  Identities=50%  Similarity=0.890  Sum_probs=152.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999888888888888888888888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824           93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      ||++++++|+.+..|+..+......+.|+++|+||+|+...+.+..++++++++..+++++++||++|.|++++|..++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987776678999999999999888888888999999999999999999999999999999998


Q ss_pred             HHHH
Q 027824          173 QIYK  176 (218)
Q Consensus       173 ~i~~  176 (218)
                      .+++
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            7754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=222.34  Aligned_cols=207  Identities=47%  Similarity=0.786  Sum_probs=170.1

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      .++.+||+++|++++|||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            35679999999999999999999999988888888988888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (218)
                      |+|||++++++|+.+..|+..+........|+++++||+|+.+.+.+..+++.++++.++++|+++||+++.|++++|.+
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998887666578999999999999887888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCC-ccccCcc
Q 027824          170 VLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSV-LKRIGCC  216 (218)
Q Consensus       170 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~cc  216 (218)
                      +++.+++...+.......+......+..+.+.-.-..+.. .|-++||
T Consensus       163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
T PLN03108        163 TAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC  210 (210)
T ss_pred             HHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence            9999887654443333333333333333333322222222 3456777

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.9e-36  Score=223.71  Aligned_cols=165  Identities=33%  Similarity=0.520  Sum_probs=145.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      ||+++|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.|..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999988877777776554 4456678888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824           95 VTRHATFQNVGRWLRELREHTD---PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (218)
                      ++++.+|+.+..|+..+.....   .+.|+++|+||+|+...+.+...++.+++...+++|+++||++|.|++++|.+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988866542   5789999999999987778888888889988999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 027824          172 TQIYKIVSK  180 (218)
Q Consensus       172 ~~i~~~~~~  180 (218)
                      +.+.+++..
T Consensus       160 ~~l~~~~~~  168 (190)
T cd04144         160 RALRQQRQG  168 (190)
T ss_pred             HHHHHhhcc
Confidence            887655444

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=8.1e-36  Score=223.39  Aligned_cols=169  Identities=43%  Similarity=0.748  Sum_probs=152.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      .+||+++|++|+|||||+++|+++.+...+.+|.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999988888889888888877776 4667899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      |||++++++|+.+..|+..+..... ...|+++|+||+|+.....+..+++.++++.++++|+++||++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999876544 467889999999998888888888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 027824          171 LTQIYKIVSKR  181 (218)
Q Consensus       171 ~~~i~~~~~~~  181 (218)
                      ++.+.+.....
T Consensus       162 ~~~~~~~~~~~  172 (211)
T cd04111         162 TQEIYERIKRG  172 (211)
T ss_pred             HHHHHHHhhcC
Confidence            99887774433

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=2.9e-36  Score=220.53  Aligned_cols=162  Identities=31%  Similarity=0.547  Sum_probs=146.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      ...+||+++|++++|||||+++|..+.+...+.||.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4568999999999999999999999999888889987665 466778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEEc
Q 027824           91 LVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH------------LVAVSTEDGKAFAEQESL-YFMETS  156 (218)
Q Consensus        91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~S  156 (218)
                      +|||++++.+|+.+ ..|+..+.... ++.|+|||+||+|+.+            .+.++.++++++++++++ +|+|||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 78999998765 6799999999999964            346889999999999996 899999


Q ss_pred             cCCCCC-HHHHHHHHHHHH
Q 027824          157 ALDATN-VENAFTEVLTQI  174 (218)
Q Consensus       157 a~~~~~-v~~~~~~i~~~i  174 (218)
                      |+++.| |+++|..+++.+
T Consensus       161 Ak~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         161 ALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            999998 999999998854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=2.5e-36  Score=219.60  Aligned_cols=159  Identities=32%  Similarity=0.585  Sum_probs=144.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++++|||||+.++..+.|...+.+|.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888889987665 456778888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCc----------ccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027824           94 DVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHLV----------AVSTEDGKAFAEQESL-YFMETSALDAT  161 (218)
Q Consensus        94 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  161 (218)
                      |++++++|+.+ ..|+..+.... .++|++||+||+|+.+.+          .+..+++.++++..++ .|+||||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999997765 579999999999996543          4788899999999998 59999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027824          162 NVENAFTEVLTQI  174 (218)
Q Consensus       162 ~v~~~~~~i~~~i  174 (218)
                      ||+++|..+++.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999865

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=5.4e-36  Score=221.13  Aligned_cols=165  Identities=36%  Similarity=0.551  Sum_probs=147.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|++|+|||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            358999999999999999999999988877878877655 5667788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      |||++++++|+.+..|+..+..... .+.|+++|+||+|+.+...+..+++.+++...+++|+++||++|.|++++|.+|
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999999998876543 578999999999998777778778888888889999999999999999999999


Q ss_pred             HHHHHHH
Q 027824          171 LTQIYKI  177 (218)
Q Consensus       171 ~~~i~~~  177 (218)
                      ++.+.+.
T Consensus       163 ~~~l~~~  169 (189)
T PTZ00369        163 VREIRKY  169 (189)
T ss_pred             HHHHHHH
Confidence            9887653

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-36  Score=201.26  Aligned_cols=207  Identities=42%  Similarity=0.744  Sum_probs=190.4

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      .+.+.+|-+++|+-|+|||+|+..|....|...-+.|+|+++..+.+.+.+..++++|||+.|++.|+...+.+++++.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      .+.|||++.+.+++.+..|+........++.-+++++||.|+...+.+.++++++|+.++|+.|+++||++|.++++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCc
Q 027824          169 EVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGC  215 (218)
Q Consensus       169 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  215 (218)
                      ...+.+++........-....+..+.++.......-.....++|-+|
T Consensus       167 e~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c  213 (215)
T KOG0097|consen  167 ETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQC  213 (215)
T ss_pred             HHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccC
Confidence            99999999988888887777777766665555554556666777777

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.3e-35  Score=215.00  Aligned_cols=166  Identities=52%  Similarity=0.881  Sum_probs=153.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      ++.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            35699999999999999999999999998888899988887788888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      +|||++++.+|+.+..|+..+......++|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|.++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999987766789999999999998877778888889999999999999999999999999999


Q ss_pred             HHHHHH
Q 027824          171 LTQIYK  176 (218)
Q Consensus       171 ~~~i~~  176 (218)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            988754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=8.6e-36  Score=216.75  Aligned_cols=164  Identities=31%  Similarity=0.495  Sum_probs=148.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999999888878887544 45577788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824           93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (218)
                      ||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.++++.++++++++..+++|++|||++|.||+++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999999999888876533 6799999999999988888898899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027824          172 TQIYKI  177 (218)
Q Consensus       172 ~~i~~~  177 (218)
                      ..+.+.
T Consensus       161 ~~~~~~  166 (172)
T cd04141         161 REIRRK  166 (172)
T ss_pred             HHHHHh
Confidence            887763

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.1e-35  Score=216.98  Aligned_cols=161  Identities=32%  Similarity=0.539  Sum_probs=144.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            37999999999999999999999999888888887665 45677889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEEccC
Q 027824           93 YDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH------------LVAVSTEDGKAFAEQESL-YFMETSAL  158 (218)
Q Consensus        93 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  158 (218)
                      ||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..++++++++++++ +|+||||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 78999998765 6799999999999964            245888999999999997 79999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 027824          159 DATN-VENAFTEVLTQIY  175 (218)
Q Consensus       159 ~~~~-v~~~~~~i~~~i~  175 (218)
                      +|++ |+++|..+++..+
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998544

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.8e-35  Score=215.69  Aligned_cols=167  Identities=41%  Similarity=0.723  Sum_probs=150.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC----------CeEEEEEEEeCCCchhhhhhhh
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID----------NKVVKAQIWDTAGQERYRAITS   80 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~   80 (218)
                      ++.+||+++|++|||||||++++.++.+...+.++.+.++....+.+.          +..+.+.+||++|++.+..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            466999999999999999999999999988888998888876666554          4568899999999999999999


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027824           81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALD  159 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (218)
                      .+++++|++++|||++++++|..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            999999999999999999999999999999876543 5789999999999988778888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLTQIYKI  177 (218)
Q Consensus       160 ~~~v~~~~~~i~~~i~~~  177 (218)
                      |.|++++|++|++.++++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.9e-35  Score=212.97  Aligned_cols=161  Identities=36%  Similarity=0.703  Sum_probs=154.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      ||+++|+++||||||+++|.++.+...+.+|.+.+.....+..++..+.+.+||++|++.+..++..+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824           95 VTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      ++++++|+.+..|+..+......+.|++|++||.|+.+.++++.+++++++++++++|+++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988866799999999999998889999999999999999999999999999999999999987


Q ss_pred             H
Q 027824          175 Y  175 (218)
Q Consensus       175 ~  175 (218)
                      +
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=4.5e-35  Score=211.74  Aligned_cols=162  Identities=42%  Similarity=0.738  Sum_probs=148.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888888887777777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      |++++++++.+..|+..+........|+++|+||+|+.+.+.+..+++.+++...+++++++||+++.|++++|++++..
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999977665689999999999998877777788888998899999999999999999999999886


Q ss_pred             HH
Q 027824          174 IY  175 (218)
Q Consensus       174 i~  175 (218)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            64

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.7e-35  Score=212.04  Aligned_cols=160  Identities=44%  Similarity=0.765  Sum_probs=148.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888899988888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      |++++++|+.+..|+..+......+.|+++|+||.|+.+.+.+..+++..+++.++++|++|||++|.|++++|.+|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887665679999999999998888888889999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=3.9e-35  Score=219.94  Aligned_cols=163  Identities=28%  Similarity=0.501  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+|+|++|||||||+++|..+.+...+.||.+..+. ..+.+++..+.+.||||+|++.|..+++.+++++|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999999889899876664 56778899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824           94 DVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMETSALD  159 (218)
Q Consensus        94 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (218)
                      |++++++|+.+ ..|...+.... ++.|+|||+||+|+..+            ..+..+++..++++.++ +|+||||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            99999999999 45777665543 78999999999999653            23778899999999996 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHH
Q 027824          160 ATN-VENAFTEVLTQIYKIV  178 (218)
Q Consensus       160 ~~~-v~~~~~~i~~~i~~~~  178 (218)
                      +.+ |+++|..++...+...
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         160 SERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhcc
Confidence            985 9999999999876543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=5.1e-35  Score=220.00  Aligned_cols=164  Identities=32%  Similarity=0.553  Sum_probs=150.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC-eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN-KVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      +||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888999999998888888754 578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824           93 YDVTRHATFQNVGRWLRELREHTD---PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (218)
                      ||++++++|+.+..|+..+.....   .+.|+++|+||+|+.+.+.+..++++++++.++++++++||++|+|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999977643   45789999999999887888888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027824          170 VLTQIYKI  177 (218)
Q Consensus       170 i~~~i~~~  177 (218)
                      +...+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988875

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=4.3e-35  Score=216.50  Aligned_cols=162  Identities=30%  Similarity=0.576  Sum_probs=143.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|+.+||||||+.+|..+.|...+.+|.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999999888889987655 44566788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEEccC
Q 027824           93 YDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQES-LYFMETSAL  158 (218)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  158 (218)
                      ||++++.+|+.+. .|+..+.... .++|+++|+||.|+.+.            ..+..++++++++.++ ++|++|||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999996 5888786654 67999999999999654            2367778999999988 589999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027824          159 DATNVENAFTEVLTQIYK  176 (218)
Q Consensus       159 ~~~~v~~~~~~i~~~i~~  176 (218)
                      +|.|++++|.++++.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999987743

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=8.4e-35  Score=210.50  Aligned_cols=163  Identities=50%  Similarity=0.825  Sum_probs=150.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999998888888888888888888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824           93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      ||++++++|..+..|+..+......+.|+++++||.|+.....+..+++..++...+++++++||++|.|++++|.+|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999998766567999999999999887778888899999999999999999999999999999998


Q ss_pred             HHH
Q 027824          173 QIY  175 (218)
Q Consensus       173 ~i~  175 (218)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=7.2e-35  Score=210.91  Aligned_cols=162  Identities=32%  Similarity=0.658  Sum_probs=149.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888899999988888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD-----PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      |++++.+++.+..|+..+.....     .+.|+++|+||+|+.+...+..++.+.++...+++++++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999977653     4689999999999986667788888889998899999999999999999999


Q ss_pred             HHHHHHH
Q 027824          169 EVLTQIY  175 (218)
Q Consensus       169 ~i~~~i~  175 (218)
                      +|++.++
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.5e-34  Score=209.55  Aligned_cols=166  Identities=55%  Similarity=0.908  Sum_probs=153.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      ++.+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..+...+++++|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            46699999999999999999999999988888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      +|||++++++++.+..|+..+.....++.|+++|+||.|+.+...+..++++.++...++.++++||++++|++++|.++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999987766789999999999998777788888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027824          171 LTQIYK  176 (218)
Q Consensus       171 ~~~i~~  176 (218)
                      ++.+++
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1e-34  Score=212.74  Aligned_cols=162  Identities=27%  Similarity=0.515  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|+.|||||||+++|+.+.+...+.+|.+.++..+.+.+++..+.+.+||++|++.|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888899999988888888998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-----CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH-----LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      |++++.+|+.+..|+..+........| |+|+||+|+..     ......++++++++..++++++|||++|.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999776545566 68899999953     122234567788888899999999999999999999


Q ss_pred             HHHHHHHH
Q 027824          169 EVLTQIYK  176 (218)
Q Consensus       169 ~i~~~i~~  176 (218)
                      ++.+.+.+
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99988865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.6e-34  Score=217.51  Aligned_cols=165  Identities=32%  Similarity=0.521  Sum_probs=147.5

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      ....+||+++|.+|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+||++|++.|..++..+++++|++
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   89 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence            37789999999999999999999999999888889999998888887888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (218)
                      |+|||++++.+|+.+..|+..+.... .+.|+++|+||+|+.. ..+..++. +++...++.|++|||++|.|++++|.+
T Consensus        90 ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~  166 (219)
T PLN03071         90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (219)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence            99999999999999999999998765 6799999999999964 33444444 777788999999999999999999999


Q ss_pred             HHHHHHHH
Q 027824          170 VLTQIYKI  177 (218)
Q Consensus       170 i~~~i~~~  177 (218)
                      |+..+.+.
T Consensus       167 l~~~~~~~  174 (219)
T PLN03071        167 LARKLAGD  174 (219)
T ss_pred             HHHHHHcC
Confidence            99988654

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=3.8e-34  Score=212.03  Aligned_cols=164  Identities=33%  Similarity=0.606  Sum_probs=145.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      +||+++|++|+|||||+++|+++.+.. .+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998864 5678888888778888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824           93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL----VAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      ||++++.+++.+..|+..+.... .+.|+++|+||.|+...    .++..+++.+++...+++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999987653 57999999999998532    45566678888888899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027824          169 EVLTQIYKIV  178 (218)
Q Consensus       169 ~i~~~i~~~~  178 (218)
                      ++.+.+.+..
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999887544

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.9e-34  Score=207.43  Aligned_cols=163  Identities=77%  Similarity=1.199  Sum_probs=150.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|+++||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            45899999999999999999999999888888999988888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (218)
                      |||++++.+++.+..|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999887756799999999999988777888888899988899999999999999999999998


Q ss_pred             HHH
Q 027824          172 TQI  174 (218)
Q Consensus       172 ~~i  174 (218)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.5e-34  Score=210.81  Aligned_cols=159  Identities=30%  Similarity=0.517  Sum_probs=141.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||+++|..+.+...+.||.+..+. ..+.+++..+.+.|||++|++.+..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999998888899876663 45677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEEccCC
Q 027824           94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQES-LYFMETSALD  159 (218)
Q Consensus        94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  159 (218)
                      |++++++|+.+. .|+..+.... .++|+|+|+||+|+...            +.+..+++++++++.+ +.|++|||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999996 5988887654 57999999999998653            5677788899998887 6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLTQI  174 (218)
Q Consensus       160 ~~~v~~~~~~i~~~i  174 (218)
                      |.|++++|+.++..+
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=4.5e-34  Score=206.51  Aligned_cols=162  Identities=45%  Similarity=0.791  Sum_probs=148.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            56999999999999999999999998888787888888878888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDATNVENAFTEV  170 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      |||++++.+++.+..|+..+......++|+++|+||+|+.+.+++..+++.++++..+. .++++||++|.|++++|.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999876667899999999999988777888888999998876 68999999999999999999


Q ss_pred             HHH
Q 027824          171 LTQ  173 (218)
Q Consensus       171 ~~~  173 (218)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=5.2e-34  Score=205.32  Aligned_cols=160  Identities=50%  Similarity=0.870  Sum_probs=148.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      |++++.++..+..|+..+.....++.|+++++||.|+.+...+..+++..++...++.++++||+++.|++++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877666889999999999998877888889999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=3.8e-34  Score=206.34  Aligned_cols=160  Identities=33%  Similarity=0.547  Sum_probs=142.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|||||||++++..+.+...+.+|.+ +.....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777777765 444566778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++.++.+++++||+++.|++++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999998876543 67999999999999877777777788888888899999999999999999999987


Q ss_pred             HH
Q 027824          173 QI  174 (218)
Q Consensus       173 ~i  174 (218)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=9.3e-34  Score=208.91  Aligned_cols=165  Identities=30%  Similarity=0.522  Sum_probs=142.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++.. .+... +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999988887887766543 35454 6778999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 027824           93 YDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL----VAVSTEDGKAFAEQESL-YFMETSALDATNVENA  166 (218)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~  166 (218)
                      ||++++++|+.+. .|+..+.... .+.|+++|+||.|+...    +.+..+++++++...++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999986 5888776543 67999999999999653    35667888999999988 8999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027824          167 FTEVLTQIYKIVSK  180 (218)
Q Consensus       167 ~~~i~~~i~~~~~~  180 (218)
                      |..+++.+.+...+
T Consensus       159 f~~l~~~~~~~~~~  172 (187)
T cd04132         159 FDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999988764443

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.4e-33  Score=204.71  Aligned_cols=162  Identities=34%  Similarity=0.635  Sum_probs=144.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      ||+++|++|||||||+++|+++.+...+.+|.+.++....+.+++..+.+.+||++|++.|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998999999988888888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824           95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVA--VSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (218)
                      ++++++++.+..|+..+..... ...|+++|+||.|+.....  ...+++..++++.+++|+++||++|.|++++|..|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999998865433 4578999999999965433  346677888888899999999999999999999999


Q ss_pred             HHHHH
Q 027824          172 TQIYK  176 (218)
Q Consensus       172 ~~i~~  176 (218)
                      ..+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88755

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=6.5e-34  Score=205.44  Aligned_cols=160  Identities=33%  Similarity=0.543  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|.+|||||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            7999999999999999999999888777777776554 456777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      |++++.+|+.+..|+..+..... .+.|+++|+||+|+.+...+..+++.++++..+++|+++||++|.|++++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999998876543 67999999999999887777777788888888999999999999999999999987


Q ss_pred             HH
Q 027824          173 QI  174 (218)
Q Consensus       173 ~i  174 (218)
                      .+
T Consensus       161 ~l  162 (164)
T cd04175         161 QI  162 (164)
T ss_pred             Hh
Confidence            65

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=3.7e-33  Score=209.37  Aligned_cols=170  Identities=45%  Similarity=0.742  Sum_probs=149.1

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA   86 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   86 (218)
                      ..+.+..+||+++|++|+|||||+++|++..+. .+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   86 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA   86 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            456677899999999999999999999998774 5568888888778888888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHH-HHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027824           87 VGALLVYDVTRHATFQNVGR-WLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVE  164 (218)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (218)
                      |++|+|||++++++|+.+.. |...+..... .+.|+++|+||+|+.....+..++...++...++.|+++||+++.|++
T Consensus        87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~  166 (211)
T PLN03118         87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE  166 (211)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999976 6666654332 568999999999998777778788888898899999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027824          165 NAFTEVLTQIYKI  177 (218)
Q Consensus       165 ~~~~~i~~~i~~~  177 (218)
                      ++|.+|...+.+.
T Consensus       167 ~l~~~l~~~~~~~  179 (211)
T PLN03118        167 QCFEELALKIMEV  179 (211)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988664

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.9e-33  Score=202.76  Aligned_cols=163  Identities=61%  Similarity=0.985  Sum_probs=150.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      |++++.+++.+..|+..+......++|+++++||+|+....++..+.+++++...+++++++|++++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988766789999999999998777778888889999899999999999999999999999988


Q ss_pred             HHH
Q 027824          174 IYK  176 (218)
Q Consensus       174 i~~  176 (218)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.5e-33  Score=203.02  Aligned_cols=158  Identities=34%  Similarity=0.622  Sum_probs=144.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID--NKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      +||+++|++++|||||+++++++.+...+.++.+.++....+.+.  +..+.+.+||+||++.+..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999888888898888877777776  777899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (218)
                      |||++++++++.+..|+..+.... .++|+++|+||.|+.....+..+++..++...+++++++|+++|.|++++|.+|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999987654 6799999999999988777888889999999999999999999999999999987


Q ss_pred             H
Q 027824          172 T  172 (218)
Q Consensus       172 ~  172 (218)
                      .
T Consensus       160 ~  160 (162)
T cd04106         160 E  160 (162)
T ss_pred             H
Confidence            5

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.1e-33  Score=203.90  Aligned_cols=163  Identities=41%  Similarity=0.719  Sum_probs=146.1

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      ++..+||+++|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++++|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34679999999999999999999999999888888888888778888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATNVE  164 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  164 (218)
                      ++|||++++++++.+..|+..+.....    .++|+++|+||+|+. .+.+..+++++++...+ .+++++||++|.|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            999999999999999999988866432    568999999999986 45667788999998887 479999999999999


Q ss_pred             HHHHHHHHH
Q 027824          165 NAFTEVLTQ  173 (218)
Q Consensus       165 ~~~~~i~~~  173 (218)
                      ++|..+++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.9e-33  Score=203.34  Aligned_cols=160  Identities=33%  Similarity=0.609  Sum_probs=141.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998888888899888887777777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      |++++++++.+..|+..+..... ++|+++|+||+|+.+ ..+. .+..+++...+++++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999987763 899999999999974 2333 34556777788899999999999999999999988


Q ss_pred             HHH
Q 027824          174 IYK  176 (218)
Q Consensus       174 i~~  176 (218)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=1.8e-33  Score=204.89  Aligned_cols=158  Identities=33%  Similarity=0.542  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|.+|||||||+.+++.+.+...+.++.+. .....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            79999999999999999999999998888888753 43556678888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824           94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMETSALD  159 (218)
Q Consensus        94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (218)
                      |++++++|+.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++.+++.+++. +|++|||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999995 5888886654 67999999999999643            35788889999999885 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLTQ  173 (218)
Q Consensus       160 ~~~v~~~~~~i~~~  173 (218)
                      |.|++++|+.++..
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=3.4e-33  Score=201.14  Aligned_cols=161  Identities=35%  Similarity=0.618  Sum_probs=141.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|.+|||||||++++.++.+.+.+.++.+.++......+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988777777777777777778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      |++++.+++.+..|+..+.... .+.|+++|+||+|+...   ..++...++...+++++++||++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999997654 57899999999998532   2344566777788999999999999999999999998


Q ss_pred             HHHHH
Q 027824          174 IYKIV  178 (218)
Q Consensus       174 i~~~~  178 (218)
                      +.+++
T Consensus       157 ~~~~~  161 (161)
T cd04124         157 AVSYK  161 (161)
T ss_pred             HHhcC
Confidence            87653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=3.9e-33  Score=202.58  Aligned_cols=162  Identities=40%  Similarity=0.727  Sum_probs=147.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-hhhhhhhcCCcEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-AITSAYYRGAVGALL   91 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~   91 (218)
                      .+||+++|++|+|||||+++++...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999999888888888888888888889988999999999999886 578888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC---CCCHHHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALD---ATNVENAF  167 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~  167 (218)
                      |||++++.+++.+..|+..+..... .++|+++|+||+|+...+++..+++.+++...+++|+++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            9999999999999999999877543 6799999999999988888888889999999999999999998   89999999


Q ss_pred             HHHHHHH
Q 027824          168 TEVLTQI  174 (218)
Q Consensus       168 ~~i~~~i  174 (218)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=2.6e-33  Score=202.08  Aligned_cols=160  Identities=32%  Similarity=0.543  Sum_probs=142.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|.+|+|||||++++..+.+...+.++.+ ++....+.+++..+.+.|||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999998877777764 455667778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      |++++.+|+.+..|+..+..... .++|+++|+||+|+.....+...+...++...+++++++||+++.|++++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999988876543 68999999999999776667767788888888899999999999999999999986


Q ss_pred             HH
Q 027824          173 QI  174 (218)
Q Consensus       173 ~i  174 (218)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=4.2e-33  Score=201.18  Aligned_cols=161  Identities=37%  Similarity=0.593  Sum_probs=142.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||++++++..+...+.++.+ +.....+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999988777777665 334566677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      |++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++|+++||++|.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888766533 57899999999999877777778888889888999999999999999999999988


Q ss_pred             HHH
Q 027824          173 QIY  175 (218)
Q Consensus       173 ~i~  175 (218)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            664

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-35  Score=199.90  Aligned_cols=174  Identities=40%  Similarity=0.705  Sum_probs=159.0

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC---------CeEEEEEEEeCCCchhhhhh
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID---------NKVVKAQIWDTAGQERYRAI   78 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~   78 (218)
                      -++++.+|.+.+|++|+||||++.+++.+.|...-..|.|+++..+.+.++         +..+.+++|||.|++.|+++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            478899999999999999999999999999999999999999988777652         34588999999999999999


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA  157 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (218)
                      ..++++.+=+++++||+++..||-+++.|+..+..+.- .+.-+++++||+|+.+.++++.+++.+++.++++||||+||
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA  163 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA  163 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence            99999999999999999999999999999999977654 55668999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhh
Q 027824          158 LDATNVENAFTEVLTQIYKIVSKR  181 (218)
Q Consensus       158 ~~~~~v~~~~~~i~~~i~~~~~~~  181 (218)
                      -++.+|++..+.++..+++...+-
T Consensus       164 ~tg~Nv~kave~LldlvM~Rie~~  187 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVMKRIEQC  187 (219)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888765543

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=8e-33  Score=199.06  Aligned_cols=160  Identities=38%  Similarity=0.748  Sum_probs=146.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|+++||||||++++++..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888899888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      |++++++|+.+..|+..+......+.|+++++||+|+.+..+...++...++...+++++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999876655579999999999997777778788888888889999999999999999999999764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=6.2e-33  Score=200.56  Aligned_cols=158  Identities=32%  Similarity=0.467  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||+++++++.+...+.++.+..+ ...+..+...+.+.+||++|++.+..++..+++.++++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999998777777765444 445566777889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD---PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      |++++++++.+..|+..+.....   .+.|+++|+||+|+...+++..+++..++...++.|+++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887766432   578999999999998777788788888888889999999999999999999999


Q ss_pred             HH
Q 027824          171 LT  172 (218)
Q Consensus       171 ~~  172 (218)
                      ++
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=3.6e-33  Score=206.03  Aligned_cols=160  Identities=33%  Similarity=0.538  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      .||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.|||++|++.+..++..+++++|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            3899999999999999999999999888878876665 345667788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcC-CeEEEEccCC
Q 027824           94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHLV------------AVSTEDGKAFAEQES-LYFMETSALD  159 (218)
Q Consensus        94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~  159 (218)
                      |++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+..            .+..+++.+++...+ ++|++|||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 5988887654 589999999999997643            355667788888776 7899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLTQIY  175 (218)
Q Consensus       160 ~~~v~~~~~~i~~~i~  175 (218)
                      |.|++++|.++++.+.
T Consensus       159 ~~~v~e~f~~l~~~~~  174 (189)
T cd04134         159 NRGVNEAFTEAARVAL  174 (189)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998876

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1e-32  Score=199.05  Aligned_cols=161  Identities=35%  Similarity=0.577  Sum_probs=142.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|++++|||||++++++..+...+.++.+..+ .....+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            48999999999999999999999888777767765443 45566788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824           93 YDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (218)
                      ||++++.+++.+..|+..+.... ..+.|+++++||+|+.....+..+++.+++...+++++++||++|.|++++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 36789999999999987777777788889888899999999999999999999998


Q ss_pred             HHH
Q 027824          172 TQI  174 (218)
Q Consensus       172 ~~i  174 (218)
                      ..+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.1e-32  Score=198.30  Aligned_cols=159  Identities=33%  Similarity=0.557  Sum_probs=139.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            7999999999999999999999988777777776444 556677888888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ..+...++.+++...+++++++||++|.|++++|+++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876643 6789999999999976 455667788888888999999999999999999999986


Q ss_pred             HH
Q 027824          173 QI  174 (218)
Q Consensus       173 ~i  174 (218)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=8.5e-33  Score=204.69  Aligned_cols=156  Identities=29%  Similarity=0.549  Sum_probs=140.5

Q ss_pred             EcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh
Q 027824           19 IGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH   98 (218)
Q Consensus        19 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   98 (218)
                      +|.++||||||+++|+.+.+...+.+|.+.++....+.+++..+.+.|||++|++.|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999988888889999999888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027824           99 ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI  177 (218)
Q Consensus        99 ~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~  177 (218)
                      .+|+.+..|+..+.... .++|+++|+||+|+.. +.+..+. .+++...++.|++|||++|.||+++|.+|+..+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998765 6899999999999864 3344433 467788899999999999999999999999988653

Ran is involved in the active transport of proteins through nuclear pores.

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=2.2e-32  Score=197.15  Aligned_cols=161  Identities=49%  Similarity=0.869  Sum_probs=148.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++++|||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   81 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence            79999999999999999999999988777788888888888889998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      |++++++++.+..|+..+........|+++++||+|+........++...+....++.++++||++|.|++++|+++++.
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd01860          82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK  161 (163)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999987766789999999999998777777788888889889999999999999999999999886


Q ss_pred             H
Q 027824          174 I  174 (218)
Q Consensus       174 i  174 (218)
                      +
T Consensus       162 l  162 (163)
T cd01860         162 L  162 (163)
T ss_pred             h
Confidence            5

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=1.9e-32  Score=203.12  Aligned_cols=163  Identities=20%  Similarity=0.276  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhhhhhcC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR--------AITSAYYRG   85 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~   85 (218)
                      +||+++|.++||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||+|...+.        ......++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999999988888888777766677788888999999999965432        223345789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCC
Q 027824           86 AVGALLVYDVTRHATFQNVGRWLRELREHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-QESLYFMETSALDAT  161 (218)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  161 (218)
                      +|++|+|||++++++|+.+..|+..+....   ..++|+++|+||+|+...+.+..+++.+++. .++++|++|||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887654   3679999999999997776677777777755 468999999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027824          162 NVENAFTEVLTQIYK  176 (218)
Q Consensus       162 ~v~~~~~~i~~~i~~  176 (218)
                      |++++|+.++..++.
T Consensus       161 ~v~~lf~~i~~~~~~  175 (198)
T cd04142         161 HILLLFKELLISATT  175 (198)
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999987763

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=3.3e-32  Score=196.50  Aligned_cols=160  Identities=32%  Similarity=0.587  Sum_probs=142.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC--cCCCCCcccceeEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN--EFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      +||+++|++|||||||++++..+  .+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6777888888888877777664 56789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+.+..++...+++.+....+++++++||+++.|++++|+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999987764 679999999999998777777777777888888999999999999999999999


Q ss_pred             HHHH
Q 027824          171 LTQI  174 (218)
Q Consensus       171 ~~~i  174 (218)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1.2e-32  Score=203.42  Aligned_cols=158  Identities=26%  Similarity=0.420  Sum_probs=130.6

Q ss_pred             eeEEEEEcCCCCChHHHHH-HHhcCc-----CCCCCccccee-EEEEEE--------EEECCeEEEEEEEeCCCchhhhh
Q 027824           13 LFKLVLIGDSGVGKSNLLS-RFTKNE-----FNLESKSTIGV-EFATRS--------LRIDNKVVKAQIWDTAGQERYRA   77 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~-~l~~~~-----~~~~~~~t~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   77 (218)
                      .+||+++|+.+||||||+. ++.++.     +...+.||.+. +.+...        ..+++..+.+.||||+|++.+  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            3799999999999999995 665543     44566677752 322222        256888999999999998753  


Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CcccC
Q 027824           78 ITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH-------------------LVAVS  137 (218)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~  137 (218)
                      +...+++++|++|+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566889999999999999999999997 5998887655 5789999999999964                   46788


Q ss_pred             HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824          138 TEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      .++++++++.++++|+||||++|.||+++|..+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999998763

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=5.7e-32  Score=194.57  Aligned_cols=161  Identities=39%  Similarity=0.695  Sum_probs=145.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||++++++..+...+.++.+..+....+...+..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887777677767777777777788889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      |++++++++.+..|+..+......++|+++++||+|+.....+..++..+++...+++++++|++++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988776689999999999998777777788888888899999999999999999999999876


Q ss_pred             H
Q 027824          174 I  174 (218)
Q Consensus       174 i  174 (218)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=9.2e-32  Score=195.53  Aligned_cols=164  Identities=38%  Similarity=0.702  Sum_probs=146.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|+++||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888788888887888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATNVENAFT  168 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~  168 (218)
                      |++++.+++.+..|...+.....    .++|+++|+||+|+..+.....++.+.+....+ .+++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999889887655442    379999999999998666667777888888877 7899999999999999999


Q ss_pred             HHHHHHHHH
Q 027824          169 EVLTQIYKI  177 (218)
Q Consensus       169 ~i~~~i~~~  177 (218)
                      ++++.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=3e-32  Score=198.54  Aligned_cols=158  Identities=34%  Similarity=0.579  Sum_probs=138.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEEC
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV   95 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   95 (218)
                      |+++|++|+|||||+++|.++.+...+.++....+ ...+..++..+.+.+||++|++.+..++..+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            68999999999999999999999887777765444 45667788889999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027824           96 TRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMETSALDAT  161 (218)
Q Consensus        96 ~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  161 (218)
                      +++++|+.+. .|+..+.... ++.|+++|+||+|+...            ..+..+++.++++..+. .|+++||+++.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999996 5998887654 68999999999999653            23777888899999886 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027824          162 NVENAFTEVLTQIY  175 (218)
Q Consensus       162 ~v~~~~~~i~~~i~  175 (218)
                      |++++|+.+++.++
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=6e-32  Score=206.28  Aligned_cols=160  Identities=24%  Similarity=0.411  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||+++|+++.+...+.+|.+ ++....+.+++..+.+.|||++|++.|..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999877777775 555677788888899999999999999988888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 027824           94 DVTRHATFQNVGRWLRELREH---------TDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNV  163 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v  163 (218)
                      |++++++|+.+..|+..+...         ...+.|+|+|+||+|+...+++..+++.+++.. .++.|+++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888653         225789999999999987677787888877764 4688999999999999


Q ss_pred             HHHHHHHHHHH
Q 027824          164 ENAFTEVLTQI  174 (218)
Q Consensus       164 ~~~~~~i~~~i  174 (218)
                      +++|++|...+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999998744

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=8.6e-32  Score=202.93  Aligned_cols=167  Identities=26%  Similarity=0.378  Sum_probs=142.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhc-CCcEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYR-GAVGALL   91 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~   91 (218)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+||++|++.  .....+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999888876 56666665577777888888889999999999982  23445666 9999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      |||++++.+|+.+..|+..+..... .++|+|+|+||+|+...+.+..+++.+++...+++|+++||+++.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998876543 679999999999998878888888888988889999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 027824          171 LTQIYKIVSKRA  182 (218)
Q Consensus       171 ~~~i~~~~~~~~  182 (218)
                      +..+...+...+
T Consensus       159 ~~~~~~~~~~~~  170 (221)
T cd04148         159 VRQIRLRRDSKE  170 (221)
T ss_pred             HHHHHhhhcccc
Confidence            998876555433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1.2e-31  Score=194.40  Aligned_cols=161  Identities=35%  Similarity=0.551  Sum_probs=143.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|.+|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||++|++.|..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            789999999999999999999998877777777644 3566778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~  171 (218)
                      |++++++++.+..|...+.... ..+.|+++++||.|+...+.+..++...+++.++ ++++++||+++.|++++|++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988887643 3689999999999998777777778888888887 8899999999999999999999


Q ss_pred             HHHH
Q 027824          172 TQIY  175 (218)
Q Consensus       172 ~~i~  175 (218)
                      ..++
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            8664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=5.9e-32  Score=193.78  Aligned_cols=153  Identities=20%  Similarity=0.350  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|+.|+|||||+.+++.+.+...+.++ +..+ ...+.+++..+.+.+||++|++.     ..+++++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999998887766444 3333 46678888889999999999965     24668899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLR--HLVAVSTEDGKAFAEQE-SLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~  169 (218)
                      |++++++|+.+..|+..+..... .++|+++|+||.|+.  ..+++..++++++++.. ++.|++|||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987654 678999999999985  35778888889999876 589999999999999999999


Q ss_pred             HHHH
Q 027824          170 VLTQ  173 (218)
Q Consensus       170 i~~~  173 (218)
                      +++.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=8.7e-32  Score=196.01  Aligned_cols=157  Identities=32%  Similarity=0.562  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||+.++.++.+...+.+|. .+.....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988888777765 4555566778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824           94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH------------LVAVSTEDGKAFAEQESL-YFMETSALD  159 (218)
Q Consensus        94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (218)
                      |++++++|+.+. .|+..+.... .+.|+++++||.|+..            .+.+..+++..+++..+. .|+++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999985 6888887543 5799999999999863            456788889999999887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLT  172 (218)
Q Consensus       160 ~~~v~~~~~~i~~  172 (218)
                      |.|++++|+.++.
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=1.6e-31  Score=192.30  Aligned_cols=159  Identities=50%  Similarity=0.862  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777788888887777778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      |++++.+++.+..|+..+..... .+.|+++++||+|+.. .....++..+++...+++++++|+++|.|++++|+.+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999998877653 6899999999999973 345667788888889999999999999999999999887


Q ss_pred             H
Q 027824          173 Q  173 (218)
Q Consensus       173 ~  173 (218)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=2.9e-31  Score=192.43  Aligned_cols=164  Identities=42%  Similarity=0.794  Sum_probs=147.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      ...++|+++|++|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999988887777788888888888888888889999999999999998899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+...+++..+..+.+.+....+++++||++|.|++++|++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999998877666689999999999998777777777788887778899999999999999999999


Q ss_pred             HHHH
Q 027824          171 LTQI  174 (218)
Q Consensus       171 ~~~i  174 (218)
                      ...+
T Consensus       165 ~~~~  168 (169)
T cd04114         165 ACRL  168 (169)
T ss_pred             HHHh
Confidence            8754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=6.8e-34  Score=188.48  Aligned_cols=161  Identities=45%  Similarity=0.733  Sum_probs=150.5

Q ss_pred             EEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEEC
Q 027824           17 VLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV   95 (218)
Q Consensus        17 ~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   95 (218)
                      +++|++++|||+|+-++..+.|-. .-..|.|+++..+.+..++..+++++|||.|++.|++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            378999999999999998877654 4458999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824           96 TRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY  175 (218)
Q Consensus        96 ~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i~  175 (218)
                      .++.||++.+.|+.++..+....+.+.+++||+|+.+++.+..++++.++..+++||.|+||++|.+++..|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999998888899999999999998999999999999999999999999999999999999998876


Q ss_pred             HH
Q 027824          176 KI  177 (218)
Q Consensus       176 ~~  177 (218)
                      +.
T Consensus       161 k~  162 (192)
T KOG0083|consen  161 KL  162 (192)
T ss_pred             Hh
Confidence            64

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=7.4e-32  Score=194.91  Aligned_cols=160  Identities=35%  Similarity=0.530  Sum_probs=137.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh-hhhhhhhhhcCCcEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER-YRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~   93 (218)
                      ||+++|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||++|++. +......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999999888777766654333 55667788889999999999885 3445667889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC-CCHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHT--DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA-TNVENAFTEV  170 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v~~~~~~i  170 (218)
                      |++++++|+.+..|+..+....  ..+.|+++|+||+|+...+.+..+++.+++...+++|+++||+++ .|++++|..+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999998887754  357999999999999877778888889999999999999999999 5999999999


Q ss_pred             HHHHH
Q 027824          171 LTQIY  175 (218)
Q Consensus       171 ~~~i~  175 (218)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            87653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd00154 Rab Rab family

Probab=100.00  E-value=3.6e-31  Score=189.38  Aligned_cols=158  Identities=54%  Similarity=0.912  Sum_probs=146.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888889888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (218)
                      |++++++++.+..|+..+......+.|+++++||+|+..+.....++.++++...+.+++++|++++.|++++|.+|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999999887767899999999999976667778889999998999999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=1.1e-31  Score=194.72  Aligned_cols=163  Identities=19%  Similarity=0.208  Sum_probs=141.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      .+.+||+++|.+|||||||+++|+++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35799999999999999999999999998 78889988888777788888888999999999999998999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFT  168 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~  168 (218)
                      ++|||++++.+++.+..|+..+..  ..++|+++|+||+|+.+...+...+..++++.+++. ++++||+++.|++++|.
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            999999999999999888886633  247899999999999765544444567777878874 79999999999999999


Q ss_pred             HHHHHHH
Q 027824          169 EVLTQIY  175 (218)
Q Consensus       169 ~i~~~i~  175 (218)
                      .+.+.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=2.8e-31  Score=193.44  Aligned_cols=159  Identities=32%  Similarity=0.510  Sum_probs=138.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||+++|..+.+...+.++.... ....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            589999999999999999999999877776776433 3446677888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824           94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMETSALD  159 (218)
Q Consensus        94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (218)
                      |++++.+|+.+. .|+..+... ..+.|+++++||+|+.+.            ..++.+++..+++..+. +|++|||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999985 588888765 478999999999998543            35777888999998886 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLTQI  174 (218)
Q Consensus       160 ~~~v~~~~~~i~~~i  174 (218)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.98  E-value=3.8e-30  Score=185.51  Aligned_cols=161  Identities=34%  Similarity=0.529  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||+++++...+...+.++.+.. .......++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999988877776666543 3455667888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      |++++.+++.+..|+..+..... .++|+++|+||+|+.........+...+...++++++++||+++.|++++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877643 67999999999999775556667778888888999999999999999999999988


Q ss_pred             HHH
Q 027824          173 QIY  175 (218)
Q Consensus       173 ~i~  175 (218)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=3.8e-30  Score=184.72  Aligned_cols=158  Identities=34%  Similarity=0.558  Sum_probs=141.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      ||+++|++|||||||++++++..+...+.++.. +.....+..++..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777766665 5556667777778899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824           95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      ++++++++.+..|+..+..... .+.|+++++||+|+.....+..+++++++...+.+++++|++++.|++++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888877665 689999999999998877788888999999888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=1.9e-30  Score=190.75  Aligned_cols=164  Identities=34%  Similarity=0.515  Sum_probs=151.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|.+|+|||+|+.+|....|...|.||.. +.+.+.+.+++..+.+.|+||+|++++..+...++++.+++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999999999987 6668888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      ||+++++.||+.+..++..+..... ..+|+++|+||+|+...+.+..++++.++..++++|+|+||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999888844333 668999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027824          171 LTQIYK  176 (218)
Q Consensus       171 ~~~i~~  176 (218)
                      +..+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            887755

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=5.1e-30  Score=186.95  Aligned_cols=159  Identities=30%  Similarity=0.534  Sum_probs=135.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      .||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999998887878776554 345677888899999999999999988888899999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824           94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMETSALD  159 (218)
Q Consensus        94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (218)
                      |++++++|+.+. .|+..+.... .+.|+++|+||+|+...            ..+...++++++...+. .+++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 5888776543 57899999999998542            23456778888888765 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLTQI  174 (218)
Q Consensus       160 ~~~v~~~~~~i~~~i  174 (218)
                      |.|++++|.++.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=6.5e-30  Score=187.70  Aligned_cols=167  Identities=20%  Similarity=0.331  Sum_probs=133.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      .+||+++|++|||||||++++..+.+... .+|.+.+.....+.. ++..+.+.+||++|++.+..++..+++++|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            48999999999999999999998887644 577776665555543 4456889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------cCCeEEEEccCCCCCHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ------ESLYFMETSALDATNVE  164 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~  164 (218)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.  +..++..++...      .+++++++||+++.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            9999999999988888887765432 67999999999998653  333444444321      13568999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 027824          165 NAFTEVLTQIYKIVSKRA  182 (218)
Q Consensus       165 ~~~~~i~~~i~~~~~~~~  182 (218)
                      ++|.+|.+.+.+.+....
T Consensus       160 ~l~~~l~~~l~~~~~~~~  177 (183)
T cd04152         160 EGLEKLYEMILKRRKMLR  177 (183)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999998876655443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=3.6e-30  Score=186.51  Aligned_cols=154  Identities=18%  Similarity=0.357  Sum_probs=124.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|++++|||||+++|..+.+. .+.+|.+.++.  .+..  ..+.+.+||++|++.+..++..+++++|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            3589999999999999999999887764 35577776653  2333  45789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCeEEEEccCCCCCHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-----ESLYFMETSALDATNVEN  165 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~  165 (218)
                      |||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.  +..++++++...     ....++++||++|.|+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            999999999999888777665432 257899999999999652  445566655421     234789999999999999


Q ss_pred             HHHHHHH
Q 027824          166 AFTEVLT  172 (218)
Q Consensus       166 ~~~~i~~  172 (218)
                      +|++|.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=6e-31  Score=189.89  Aligned_cols=153  Identities=20%  Similarity=0.327  Sum_probs=127.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      .|+++|++|+|||||+++|.++.+...+.+|.+...    ..++...+.+.+||++|++.+..++..+++++|++|+|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            389999999999999999999888777778877543    2344556889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHcCCeEEEEccCC------CCCHH
Q 027824           95 VTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST----EDGKAFAEQESLYFMETSALD------ATNVE  164 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~v~  164 (218)
                      .+++.++..+..|+..+.... .++|+++|+||.|+...+.+..    .++..++.+.++.++++||++      ++||+
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999999988886544 6899999999999977554332    224555666788899999988      99999


Q ss_pred             HHHHHHHH
Q 027824          165 NAFTEVLT  172 (218)
Q Consensus       165 ~~~~~i~~  172 (218)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=2.1e-29  Score=184.56  Aligned_cols=163  Identities=34%  Similarity=0.508  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      .||+++|.+|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++++..++..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999888766666664443 455667777888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      |+++..+++.+..|+..+..... .+.|+++++||+|+...+.+..++...++...+.+++++||+++.|++++|.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999998888766543 67899999999999876667777778888888899999999999999999999998


Q ss_pred             HHHHH
Q 027824          173 QIYKI  177 (218)
Q Consensus       173 ~i~~~  177 (218)
                      .+.+.
T Consensus       161 ~~~~~  165 (180)
T cd04137         161 EIEKV  165 (180)
T ss_pred             HHHHh
Confidence            77654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.97  E-value=3.6e-32  Score=189.01  Aligned_cols=173  Identities=30%  Similarity=0.545  Sum_probs=164.4

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA   86 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   86 (218)
                      +.+.+..+|++++|+.++||||+|++++.+-|...+..++++++....+.+..+.+.+.+||++|+++++.+..+|++++
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga   93 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA   93 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence            46788899999999999999999999999999999999999999888888888888999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      .+-++||+-+|+.||+.+..|++.+.... ..+|.++|-||+|+.++.++...+++.+++.....++.+|++...|+..+
T Consensus        94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~v  172 (246)
T KOG4252|consen   94 QASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV  172 (246)
T ss_pred             cceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence            99999999999999999999999998766 78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027824          167 FTEVLTQIYKIVSK  180 (218)
Q Consensus       167 ~~~i~~~i~~~~~~  180 (218)
                      |.+|++.+.++..+
T Consensus       173 F~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  173 FAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888665

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.4e-29  Score=186.60  Aligned_cols=163  Identities=35%  Similarity=0.559  Sum_probs=137.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      .||+++|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......+++.+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998888776666654444 445667778889999999999988877777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC----------CcccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027824           94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH----------LVAVSTEDGKAFAEQESL-YFMETSALDAT  161 (218)
Q Consensus        94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  161 (218)
                      |++++++|+.+. .|+..+.... .++|+++|+||+|+..          .+.+..+++.++++..+. .||+|||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999996 5999887654 5699999999999854          244556778888988885 79999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027824          162 NVENAFTEVLTQIYKIV  178 (218)
Q Consensus       162 ~v~~~~~~i~~~i~~~~  178 (218)
                      |++++|+++.+.++..+
T Consensus       160 ~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         160 GVDDVFEAATRAALLVR  176 (187)
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999998775543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=2e-29  Score=187.40  Aligned_cols=160  Identities=29%  Similarity=0.429  Sum_probs=135.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      ||+++|++|+|||||+++|++..+...+.++.. +.....+.+.+..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988776666653 4555667778888899999999999999998899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HcCCeEEEEccCCCCCHHHHHHHHH
Q 027824           95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRH-LVAVSTEDGKAFAE-QESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (218)
                      ++++.+++.+..|+..+..... .++|+|+|+||.|+.. ...+..++..+... ..+.+++++||++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888877654 5799999999999965 45555555554443 4568899999999999999999999


Q ss_pred             HHHH
Q 027824          172 TQIY  175 (218)
Q Consensus       172 ~~i~  175 (218)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8664

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=2.4e-30  Score=188.69  Aligned_cols=156  Identities=18%  Similarity=0.349  Sum_probs=123.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|.+++|||||++++..+.+. .+.+|.+.++.  .+..  ..+.+.+||++|++.+..++..+++++|++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            4599999999999999999999877764 45677776653  2333  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVEN  165 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  165 (218)
                      |||++++.+++....|+..+.... ..++|++||+||.|+.+..  ..++..+...     ...+.++++||++|.|+++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  164 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE  164 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence            999999999999988887775432 2578999999999996532  2233322221     1234577899999999999


Q ss_pred             HHHHHHHHH
Q 027824          166 AFTEVLTQI  174 (218)
Q Consensus       166 ~~~~i~~~i  174 (218)
                      +|++|.+.+
T Consensus       165 ~~~~l~~~~  173 (175)
T smart00177      165 GLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHh
Confidence            999997764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.5e-29  Score=185.27  Aligned_cols=159  Identities=17%  Similarity=0.330  Sum_probs=124.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      ...+||+++|.++||||||++++..+.+. .+.+|.+.+..  .+..  ..+.+.+||++|++.+..++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34589999999999999999999987775 45677776543  3333  3578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCeEEEEccCCCCCHH
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE-----SLYFMETSALDATNVE  164 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~  164 (218)
                      +|||++++++++.+..|+..+.... ..+.|++|++||+|+.+..  ..++..+...-.     .+.++++||++|+|++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            9999999999998887777664322 2578999999999997643  333333322111     1246689999999999


Q ss_pred             HHHHHHHHHHHH
Q 027824          165 NAFTEVLTQIYK  176 (218)
Q Consensus       165 ~~~~~i~~~i~~  176 (218)
                      ++|++|.+.+.+
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999887654

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=1.4e-29  Score=183.74  Aligned_cols=155  Identities=21%  Similarity=0.389  Sum_probs=126.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      ||+++|.++||||||+++|.+..+.. +.+|.+.++.  .+..  ..+.+.+||+||+..+...+..+++++|++++|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999987653 5677665553  2333  35789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC------CeEEEEccCCCCCHHHHH
Q 027824           95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES------LYFMETSALDATNVENAF  167 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~  167 (218)
                      ++++.+++.+..|+..+..... .+.|+++++||+|+.+  .+..+++++++...+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            9999999999999888865432 5689999999999964  355666766654322      368899999999999999


Q ss_pred             HHHHHHHHH
Q 027824          168 TEVLTQIYK  176 (218)
Q Consensus       168 ~~i~~~i~~  176 (218)
                      ++|.+.+..
T Consensus       154 ~~l~~~~~~  162 (169)
T cd04158         154 DWLSRQLVA  162 (169)
T ss_pred             HHHHHHHhh
Confidence            999886654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=2.9e-30  Score=185.43  Aligned_cols=152  Identities=18%  Similarity=0.384  Sum_probs=119.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|.++||||||++++..+.+. .+.+|.+.+..  .+..  ..+.+.+||++|++.+..++..+++++|++||||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999887775 45677776543  2333  3578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHH----HcCCeEEEEccCCCCCHHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREH-TDPNIIVMLIGNKTDLRHLVAVSTED-GKAFAE----QESLYFMETSALDATNVENAF  167 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~----~~~~~~~~~Sa~~~~~v~~~~  167 (218)
                      |++++.+++.+..|+..+... ...+.|+++++||+|+.+..  ..++ ...+..    ..++.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999998877776443 22568999999999996532  2222 222211    124457899999999999999


Q ss_pred             HHHHH
Q 027824          168 TEVLT  172 (218)
Q Consensus       168 ~~i~~  172 (218)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.97  E-value=1.2e-30  Score=187.82  Aligned_cols=164  Identities=33%  Similarity=0.562  Sum_probs=149.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      ...+|++++|+..+|||+|+..+..+.|+..|.||.- +.+...+.++ +..+.+.+|||.|+++|+.+++..+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3468999999999999999999999999999999996 6667778885 9999999999999999999998899999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEE
Q 027824           90 LLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMET  155 (218)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~  155 (218)
                      ++||++.+++||+++ ..|+.++..+. ++.|+|+||+|.||..+            ..+..+++++++++.|+ .|+||
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999998 55999998887 89999999999999743            36788999999999995 69999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH
Q 027824          156 SALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                      ||++..|++++|+..+..++.
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhc
Confidence            999999999999999998866

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.97  E-value=3.2e-29  Score=185.53  Aligned_cols=148  Identities=26%  Similarity=0.387  Sum_probs=127.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC-----CeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-----NKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      +||+++|+.++|||||+++|.++.+...+.+|.+.++..+.+.++     +..+.+.|||++|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888999988877777664     467899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCCCcccCHHH----HHHHH
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHT-------------------DPNIIVMLIGNKTDLRHLVAVSTED----GKAFA  145 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~  145 (218)
                      +|+|||++++.+|+.+..|+..+....                   ..++|+|||+||.|+.+++.+..+.    ...++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999996632                   2468999999999997766555443    34667


Q ss_pred             HHcCCeEEEEccCCCC
Q 027824          146 EQESLYFMETSALDAT  161 (218)
Q Consensus       146 ~~~~~~~~~~Sa~~~~  161 (218)
                      .+.+++.++.++.+..
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            8899999998888644

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=1.5e-28  Score=184.95  Aligned_cols=166  Identities=30%  Similarity=0.532  Sum_probs=145.2

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      .+....+||+++|++|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+||++|++.+..++..++.+++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            35566799999999999999999999988888888899999888888878888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF  167 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (218)
                      ++++|||++++.++..+..|+..+.... .+.|+++++||+|+.+. .+.. +...++...++.++++|+++|.|++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999987654 57899999999998643 2332 3346777788999999999999999999


Q ss_pred             HHHHHHHHH
Q 027824          168 TEVLTQIYK  176 (218)
Q Consensus       168 ~~i~~~i~~  176 (218)
                      .+|++.+..
T Consensus       161 ~~ia~~l~~  169 (215)
T PTZ00132        161 LWLARRLTN  169 (215)
T ss_pred             HHHHHHHhh
Confidence            999987764

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=3.6e-29  Score=182.22  Aligned_cols=158  Identities=19%  Similarity=0.347  Sum_probs=126.0

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      .+.+..++|+++|++|+|||||+++|.+..+. .+.+|.+..  ...+.++  .+.+.+||+||++.+..++..+++++|
T Consensus         9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d   83 (173)
T cd04154           9 KLKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTD   83 (173)
T ss_pred             hcCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence            34456699999999999999999999987553 444666543  3344444  467899999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCC
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREH-TDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDAT  161 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~  161 (218)
                      ++++|||++++.++.....|+..+... ...++|+++|+||+|+.+..  ..++..++..     ..+++++++||++|.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  161 (173)
T cd04154          84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGE  161 (173)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence            999999999999999988888777543 23679999999999997643  3445555543     246789999999999


Q ss_pred             CHHHHHHHHHH
Q 027824          162 NVENAFTEVLT  172 (218)
Q Consensus       162 ~v~~~~~~i~~  172 (218)
                      |++++|++++.
T Consensus       162 gi~~l~~~l~~  172 (173)
T cd04154         162 GLLQGIDWLVD  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=1.2e-28  Score=178.92  Aligned_cols=157  Identities=33%  Similarity=0.597  Sum_probs=132.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||+++|+++.+...+.++.. +........++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999988666666654 334555667788899999999999988888888889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc-----------ccCHHHHHHHHHHcCC-eEEEEccCCC
Q 027824           94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHLV-----------AVSTEDGKAFAEQESL-YFMETSALDA  160 (218)
Q Consensus        94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  160 (218)
                      |++++.++.... .|+..+.... .+.|+++|+||+|+....           .+..+++.+++..++. +|+++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999998774 5777776654 589999999999986544           3456778888888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 027824          161 TNVENAFTEVLT  172 (218)
Q Consensus       161 ~~v~~~~~~i~~  172 (218)
                      .|++++|.+|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=8.8e-29  Score=181.43  Aligned_cols=159  Identities=21%  Similarity=0.353  Sum_probs=123.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|+++||||||++++..+.+.. +.+|.+.++.  .+..  ..+.+.+||++|++.+..++..+++++|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999998877754 5577776553  3333  45789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREH-TDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVEN  165 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  165 (218)
                      |||++++++++.+..++..+... ...++|++||+||.|+.+..  ..++......     ...+.++++||++|.|+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            99999999999888777766432 22568999999999986532  2222222211     1223577999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027824          166 AFTEVLTQIYKI  177 (218)
Q Consensus       166 ~~~~i~~~i~~~  177 (218)
                      +|++|.+.+.+.
T Consensus       169 ~~~~l~~~i~~~  180 (182)
T PTZ00133        169 GLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHh
Confidence            999999877653

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=1.3e-28  Score=178.13  Aligned_cols=160  Identities=29%  Similarity=0.378  Sum_probs=125.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|++|+|||||+++|.++.+...+..+ ... ......+.+..+.+.+||++|.+.+...+..+++.+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999999886554332 222 2344455677789999999999888877778889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHc-C-CeEEEEccCCCCCHHHHHH
Q 027824           94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHLVAVS--TEDGKAFAEQE-S-LYFMETSALDATNVENAFT  168 (218)
Q Consensus        94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~~v~~~~~  168 (218)
                      |++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.....  .++...++..+ + .+++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 5888777654 589999999999997654421  23333333333 2 3799999999999999999


Q ss_pred             HHHHHHHH
Q 027824          169 EVLTQIYK  176 (218)
Q Consensus       169 ~i~~~i~~  176 (218)
                      .+.+.+.+
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=1.1e-27  Score=174.19  Aligned_cols=141  Identities=35%  Similarity=0.677  Sum_probs=128.3

Q ss_pred             CcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhc
Q 027824           36 NEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHT  115 (218)
Q Consensus        36 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  115 (218)
                      +.|...+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35667788999999988888899999999999999999999999999999999999999999999999999999987665


Q ss_pred             CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824          116 DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       116 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                      ..++|++||+||+|+.+.+.+..+++..++..++..|+++||++|.|++++|++|++.+.+
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5678999999999998777788888899999899999999999999999999999988755

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=1.9e-28  Score=176.39  Aligned_cols=152  Identities=16%  Similarity=0.324  Sum_probs=118.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcC-CCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF-NLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +|+++|+++||||||+++|.+..+ ...+.+|.+.....  +.  ...+.+.+||+||++.+..++..+++++|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 44556777654432  22  23578899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVEN  165 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  165 (218)
                      |++++.++..+..|+..+....   ..++|+++|+||+|+.....  .++..+...     ....+++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888888775532   25799999999999965322  222222211     1234689999999999999


Q ss_pred             HHHHHHH
Q 027824          166 AFTEVLT  172 (218)
Q Consensus       166 ~~~~i~~  172 (218)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=1.2e-27  Score=174.43  Aligned_cols=153  Identities=20%  Similarity=0.381  Sum_probs=121.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .++|+++|++++|||||++++..+.+.. +.++.+.++.  .+..+  .+.+.+||+||++.+...+..+++++|++++|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999887764 4567665543  33333  47899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHH-HHH----HHcCCeEEEEccCCCCCHHHH
Q 027824           93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGK-AFA----EQESLYFMETSALDATNVENA  166 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      +|+++++++.....|+..+..... .++|+++++||+|+.+.  ...++.. .+.    ...+++++++||++|.|++++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence            999999999888777776654332 57899999999998653  2333322 222    224567999999999999999


Q ss_pred             HHHHHH
Q 027824          167 FTEVLT  172 (218)
Q Consensus       167 ~~~i~~  172 (218)
                      |++|..
T Consensus       168 ~~~l~~  173 (174)
T cd04153         168 LDWIAS  173 (174)
T ss_pred             HHHHhc
Confidence            999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=2.9e-28  Score=176.41  Aligned_cols=153  Identities=23%  Similarity=0.363  Sum_probs=121.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      +|+++|.++||||||++++.+. +...+.+|.+...  ..+...  .+.+.+||++|++.+..++..+++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999977 6666778877653  344443  4778999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHH-H---HHHHHHHc--CCeEEEEccCCC------C
Q 027824           95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTE-D---GKAFAEQE--SLYFMETSALDA------T  161 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~-~---~~~~~~~~--~~~~~~~Sa~~~------~  161 (218)
                      ++++.+++.+..|+..+..... .++|+++|+||.|+.+....... +   ..+++.+.  .+.+++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            9999999999999988876533 57899999999999765422111 1   12223222  346788999998      8


Q ss_pred             CHHHHHHHHHH
Q 027824          162 NVENAFTEVLT  172 (218)
Q Consensus       162 ~v~~~~~~i~~  172 (218)
                      |+++.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PLN00023 GTP-binding protein; Provisional

Probab=99.96  E-value=3e-27  Score=183.17  Aligned_cols=144  Identities=24%  Similarity=0.442  Sum_probs=124.7

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC-------------eEEEEEEEeCCCch
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN-------------KVVKAQIWDTAGQE   73 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~   73 (218)
                      ..+....+||+|+|+.|||||||+++|.++.+...+.+|.+.++..+.+.+++             ..+.+.|||++|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            34556679999999999999999999999999888889999988777776642             46889999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCCc---c---
Q 027824           74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD------------PNIIVMLIGNKTDLRHLV---A---  135 (218)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~nK~Dl~~~~---~---  135 (218)
                      .|..++..++++++++|+|||++++.+|+.+..|+..+.....            .++|++||+||+|+...+   .   
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~  174 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG  174 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence            9999999999999999999999999999999999999987531            258999999999996542   2   


Q ss_pred             cCHHHHHHHHHHcCC
Q 027824          136 VSTEDGKAFAEQESL  150 (218)
Q Consensus       136 ~~~~~~~~~~~~~~~  150 (218)
                      +..+++++|+.++++
T Consensus       175 ~~~e~a~~~A~~~g~  189 (334)
T PLN00023        175 NLVDAARQWVEKQGL  189 (334)
T ss_pred             ccHHHHHHHHHHcCC
Confidence            357889999999774

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=9.7e-28  Score=172.40  Aligned_cols=152  Identities=24%  Similarity=0.437  Sum_probs=119.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      +|+++|++|+|||||+++|.+..+... .+|.+.++  ..+... ..+.+.+||++|++.+...+..+++.+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887543 46666543  333333 34789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHH------HHHcCCeEEEEccCCCCCHHHHH
Q 027824           95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAF------AEQESLYFMETSALDATNVENAF  167 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~~~~  167 (218)
                      ++++.++..+..|+..+..... .+.|+++|+||+|+....  ..++....      ....++++++|||++|+|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999999998888877755432 579999999999986432  22222222      12234579999999999999999


Q ss_pred             HHHHH
Q 027824          168 TEVLT  172 (218)
Q Consensus       168 ~~i~~  172 (218)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=1.7e-27  Score=172.34  Aligned_cols=152  Identities=20%  Similarity=0.381  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcC------CCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF------NLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      +|+++|++|+|||||++++.+...      ...+.+|.+.++  ..+.++  .+.+.+||+||++.+..++..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432      223335554444  334444  4688999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------cCCeEEEEccCCC
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-------ESLYFMETSALDA  160 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  160 (218)
                      +++|+|++++++++....|+..+..... .+.|+++++||+|+...  ...++..++...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            9999999999999888888877765432 67999999999998653  333445544433       3468999999999


Q ss_pred             CCHHHHHHHHHH
Q 027824          161 TNVENAFTEVLT  172 (218)
Q Consensus       161 ~~v~~~~~~i~~  172 (218)
                      .|++++|++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999865

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=6.3e-28  Score=173.12  Aligned_cols=151  Identities=21%  Similarity=0.351  Sum_probs=115.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      ||+++|++++|||||++++..+.+.. +.+|.+.+..  .+..  ..+.+.+||+||++.+..++..+++.+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998877643 4466655443  2333  34789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 027824           95 VTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      ++++.++.....|+..+.. ....++|+++|+||+|+.+..  ...+..+...     ..+.+++++||+++.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9999888777665554433 222579999999999996533  1222222111     1235799999999999999999


Q ss_pred             HHHH
Q 027824          169 EVLT  172 (218)
Q Consensus       169 ~i~~  172 (218)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.96  E-value=1.5e-27  Score=171.12  Aligned_cols=151  Identities=20%  Similarity=0.375  Sum_probs=120.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      ||+++|.+|||||||++++++... ..+.++.+....  .+.+.  .+.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999874 344566665443  33333  4678999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 027824           95 VTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      ++++.++.....|+..+.... ..+.|+++++||+|+....  ..++..+...     ...++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888877775543 3689999999999987643  2233333322     2456899999999999999999


Q ss_pred             HHHH
Q 027824          169 EVLT  172 (218)
Q Consensus       169 ~i~~  172 (218)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=4e-27  Score=173.92  Aligned_cols=155  Identities=23%  Similarity=0.340  Sum_probs=124.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..++|+++|++|||||||++++.+..+. .+.+|.+..  ...+.+++  +.+.+||+||+..+...+..+++++|++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988764 455665543  33444444  678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----------------cCCeEEE
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ----------------ESLYFME  154 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~  154 (218)
                      |+|+++..+++....|+..+..... .+.|+++++||+|+..  .+..++.+++...                ..+.+++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM  170 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence            9999999999888888877765433 6799999999999864  4555666666542                2246899


Q ss_pred             EccCCCCCHHHHHHHHHHH
Q 027824          155 TSALDATNVENAFTEVLTQ  173 (218)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~  173 (218)
                      |||++++|++++|++|.+.
T Consensus       171 ~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         171 CSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             eEecCCCChHHHHHHHHhh
Confidence            9999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.95  E-value=1.5e-26  Score=158.76  Aligned_cols=164  Identities=18%  Similarity=0.304  Sum_probs=131.5

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      .++..++|+++|..|+||||++++|.+... ....||.+++..  ++.+  +.+++.+||.+|+...++.|++|+.++|+
T Consensus        12 ~kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Ik--tl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdg   86 (185)
T KOG0073|consen   12 LKEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIK--TLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDG   86 (185)
T ss_pred             hhhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceeeE--EEEe--cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence            355689999999999999999999988774 344477775544  3333  44788999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHcCCeEEEEccCCCCCH
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVST----EDGKAFAEQESLYFMETSALDATNV  163 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (218)
                      +|+|+|.+|+..++.....+..+..... .+.|++|++||.|+........    ....++++...++++.||+.+|+++
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l  166 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL  166 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence            9999999999988887666666544322 7899999999999974322111    1134555678899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027824          164 ENAFTEVLTQIYKI  177 (218)
Q Consensus       164 ~~~~~~i~~~i~~~  177 (218)
                      .+-++|++..+.++
T Consensus       167 ~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  167 LEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999874

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=1e-26  Score=169.30  Aligned_cols=158  Identities=26%  Similarity=0.461  Sum_probs=126.9

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      ....++|+++|..+||||||++++..+.... ..||.+.+..  .+.+.+  +.+.+||.+|+..++.+|..++.++|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~--~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE--EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE--EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc--eeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            3667999999999999999999998766543 5577776643  444454  6789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------cCCeEEEEccCCCCC
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ------ESLYFMETSALDATN  162 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~  162 (218)
                      |||+|.++.+.+......+..+..... .+.|++|++||.|+.+.  ...++.......      ..+.++.|||.+|+|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            999999999888888777777655432 68999999999998763  344455444322      344589999999999


Q ss_pred             HHHHHHHHHHHH
Q 027824          163 VENAFTEVLTQI  174 (218)
Q Consensus       163 v~~~~~~i~~~i  174 (218)
                      +.+.|+||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999998864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=3.1e-26  Score=168.31  Aligned_cols=156  Identities=19%  Similarity=0.261  Sum_probs=121.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      ...++|+++|.+|||||||++++.++.+.. +.+|.+.+  ...+...  .+++.+||++|+..+..++..+++++|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            445999999999999999999999876643 33454433  2333333  367899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------cCCeEEEEcc
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ------------ESLYFMETSA  157 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  157 (218)
                      +|+|++++.++.....|+..+.... ..+.|+++|+||+|+..  .++.++.++...-            ....+++|||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            9999999999988888777765432 26789999999999864  3444555444321            1235899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027824          158 LDATNVENAFTEVLTQ  173 (218)
Q Consensus       158 ~~~~~v~~~~~~i~~~  173 (218)
                      +++.|++++++||...
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=5.6e-26  Score=162.52  Aligned_cols=152  Identities=22%  Similarity=0.411  Sum_probs=121.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      .|+++|++|||||||++++.+..+...+.++.+.++..  +....  +.+.+||++|+..+..++..+++.+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            38999999999999999999999888888887766543  33333  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHHHH
Q 027824           95 VTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFA-----EQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      +++..++.....|+..+.... ..++|+++++||+|+.+....  .+.....     ....++++++|++++.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            999999988877777765432 267899999999998664322  1221111     12346799999999999999999


Q ss_pred             HHHH
Q 027824          169 EVLT  172 (218)
Q Consensus       169 ~i~~  172 (218)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=1.2e-25  Score=164.53  Aligned_cols=154  Identities=21%  Similarity=0.279  Sum_probs=114.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc-------CCCCCcc------cceeEEEEEEEEE-----CCeEEEEEEEeCCCchhhh
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE-------FNLESKS------TIGVEFATRSLRI-----DNKVVKAQIWDTAGQERYR   76 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~-------~~~~~~~------t~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~   76 (218)
                      +|+++|++++|||||+++|++..       +...+.+      +.+.++....+..     ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            69999999999999999998742       1111212      2233443333322     5667889999999999999


Q ss_pred             hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---eEE
Q 027824           77 AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL---YFM  153 (218)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~  153 (218)
                      ..+..+++.+|++|+|||++++.+++.+..|....    ..++|+++|+||+|+.+..  ......+++...++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999877766666664332    2468999999999986532  12233455555565   389


Q ss_pred             EEccCCCCCHHHHHHHHHHHH
Q 027824          154 ETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       154 ~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      ++||++|.|++++|++|...+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=1.9e-25  Score=161.73  Aligned_cols=156  Identities=20%  Similarity=0.220  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh---------hhhhhhhc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR---------AITSAYYR   84 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~   84 (218)
                      .+|+++|++|+|||||+++|++..+.....+..+.+......  ....+.+.+|||||.....         ........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999987643322222222222222  2234789999999973210         01111123


Q ss_pred             CCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027824           85 GAVGALLVYDVTRHAT--FQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATN  162 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (218)
                      .+|++|+|+|++++.+  ++....|+..+.... .+.|+++|+||+|+.....+..  ..++....+.+++++||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence            4689999999998754  456667887776543 4789999999999976544332  4555555678899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027824          163 VENAFTEVLTQI  174 (218)
Q Consensus       163 v~~~~~~i~~~i  174 (218)
                      ++++|+++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=1.4e-25  Score=167.53  Aligned_cols=157  Identities=20%  Similarity=0.181  Sum_probs=116.8

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh---------hhhhhh
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER---------YRAITS   80 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~   80 (218)
                      .++.++|+++|++|||||||++++++..+.....+..+.+.....+.+.+. ..+.+||+||...         +...+ 
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            355689999999999999999999998754333333334444444444443 3689999999622         22221 


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824           81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA  160 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (218)
                      ..+..+|++++|+|++++.++..+..|...+......+.|+++|+||+|+......     ..++...+.+++++||+++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCC
Confidence            23678999999999999988888878887776655567899999999998654322     1344556778999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027824          161 TNVENAFTEVLTQ  173 (218)
Q Consensus       161 ~~v~~~~~~i~~~  173 (218)
                      .|+++++++|.+.
T Consensus       191 ~gi~~l~~~L~~~  203 (204)
T cd01878         191 EGLDELLEAIEEL  203 (204)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=1.6e-25  Score=162.92  Aligned_cols=154  Identities=21%  Similarity=0.338  Sum_probs=118.8

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      +....++|+++|++|||||||++++.+..+.. +.++.+.+.  ..+..++  ..+.+||++|+..+...+..+++.+|+
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            44557999999999999999999999876643 446666443  3344444  578999999999988888899999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--------CeEEEEccCC
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES--------LYFMETSALD  159 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~  159 (218)
                      +++|+|+++..++.....|+..+.... ..++|+++++||+|+.....  .+   ++....+        .+++++||++
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~---~i~~~l~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AE---EIAEALNLHDLRDRTWHIQACSAKT  159 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HH---HHHHHcCCcccCCCeEEEEEeECCC
Confidence            999999999988888877766664432 25799999999999865332  12   2222222        2478999999


Q ss_pred             CCCHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLT  172 (218)
Q Consensus       160 ~~~v~~~~~~i~~  172 (218)
                      |+|++++|+||++
T Consensus       160 ~~gi~~~~~~l~~  172 (173)
T cd04155         160 GEGLQEGMNWVCK  172 (173)
T ss_pred             CCCHHHHHHHHhc
Confidence            9999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=8.1e-25  Score=156.18  Aligned_cols=156  Identities=35%  Similarity=0.518  Sum_probs=128.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++.+++++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            79999999999999999999999877777788888877776777776688999999999999999999999999999999


Q ss_pred             ECCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           94 DVTRH-ATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        94 d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      |+... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||+++.|++++|++|
T Consensus        82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            99877 6666654 67777766554488999999999996644 33333334444456679999999999999999886

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=6e-25  Score=173.99  Aligned_cols=163  Identities=15%  Similarity=0.095  Sum_probs=123.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh----hhhhhh---hhhcC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER----YRAITS---AYYRG   85 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~---~~~~~   85 (218)
                      ...|.|+|.|+||||||+++|++........+.++.......+.+.+ ...+.+||+||..+    ...+..   ..++.
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            46799999999999999999998664433334445555555555532 24679999999632    122333   34567


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027824           86 AVGALLVYDVTRHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNV  163 (218)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (218)
                      ++++|+|+|+++.++++.+..|..++..+..  .++|+++|+||+|+.+...+..+..+.+....+.+++++||++++|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999988889999999999977653  47899999999999765544444455555666789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027824          164 ENAFTEVLTQIYK  176 (218)
Q Consensus       164 ~~~~~~i~~~i~~  176 (218)
                      ++++++|.+.+.+
T Consensus       317 ~eL~~~L~~~l~~  329 (335)
T PRK12299        317 DELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887754

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=2.3e-25  Score=161.58  Aligned_cols=157  Identities=17%  Similarity=0.131  Sum_probs=112.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch----hhhhhhhhh---hcCCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----RYRAITSAY---YRGAV   87 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~---~~~~d   87 (218)
                      +|+++|.+|||||||+++|.+........+..+.+.....+.+.+. ..+.+|||||..    .+..+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999876542222122222222233333332 478999999963    222233333   34699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 027824           88 GALLVYDVTRH-ATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNV  163 (218)
Q Consensus        88 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v  163 (218)
                      ++++|+|++++ .+++.+..|...+.....  .+.|+++|+||+|+....... +....+... .+.+++++||+++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999999 789999999888876542  468999999999996654432 334455555 3788999999999999


Q ss_pred             HHHHHHHHHH
Q 027824          164 ENAFTEVLTQ  173 (218)
Q Consensus       164 ~~~~~~i~~~  173 (218)
                      +++|++|.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=5.2e-24  Score=160.67  Aligned_cols=169  Identities=37%  Similarity=0.562  Sum_probs=138.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|+.|||||||+++|.++.+...+.++.+..+...........+.+.+||++|++++..++..++.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            39999999999999999999999999998988888777777666666688999999999999999999999999999999


Q ss_pred             EECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHc---CCeEEEEc
Q 027824           93 YDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV------------AVSTEDGKAFAEQE---SLYFMETS  156 (218)
Q Consensus        93 ~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~S  156 (218)
                      ||..+.. +++....|...+........|+++++||+|+....            ..............   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            9999954 55556789999888775679999999999997653            22233322222222   33489999


Q ss_pred             cC--CCCCHHHHHHHHHHHHHHHHhhh
Q 027824          157 AL--DATNVENAFTEVLTQIYKIVSKR  181 (218)
Q Consensus       157 a~--~~~~v~~~~~~i~~~i~~~~~~~  181 (218)
                      ++  .+.++.++|..+...+.+.....
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            99  99999999999999887654433

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.7e-24  Score=155.95  Aligned_cols=152  Identities=17%  Similarity=0.119  Sum_probs=106.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC---cCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN---EFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      +.|+++|++++|||||+++|++.   .+...+.++.+.+.....+.+.. ...+.+|||||++.+......+++++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            36899999999999999999864   23333334444454444444442 357899999999988777777889999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH---cCCeEEEEccCCCCC
Q 027824           91 LVYDVTR---HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA--VSTEDGKAFAEQ---ESLYFMETSALDATN  162 (218)
Q Consensus        91 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~  162 (218)
                      +|+|+++   .++.+.+    ..+...  ...|+++++||+|+.....  ...++..++...   .+.+++++||+++.|
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   3333322    222221  2248999999999965321  112334444444   467899999999999


Q ss_pred             HHHHHHHHHH
Q 027824          163 VENAFTEVLT  172 (218)
Q Consensus       163 v~~~~~~i~~  172 (218)
                      ++++|+.+..
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=4.7e-25  Score=155.43  Aligned_cols=134  Identities=24%  Similarity=0.250  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch-----hhhhhhhhhhcCCcEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE-----RYRAITSAYYRGAVGA   89 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~   89 (218)
                      ||+++|++|+|||||+++|.+..+.  +.+|.+.++       .     -.+||+||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999987652  334433322       1     1689999972     3344433 57999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDATNVENAFT  168 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~  168 (218)
                      |+|||++++.++.. ..|...+      ..|+++|+||+|+.+. ....++++++++..+. +++++||+++.|++++|.
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999988754 2343322      2489999999998652 3455667788877776 799999999999999998


Q ss_pred             HHH
Q 027824          169 EVL  171 (218)
Q Consensus       169 ~i~  171 (218)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=1.2e-23  Score=148.89  Aligned_cols=153  Identities=46%  Similarity=0.761  Sum_probs=123.4

Q ss_pred             EEcCCCCChHHHHHHHhcCcC-CCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECC
Q 027824           18 LIGDSGVGKSNLLSRFTKNEF-NLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT   96 (218)
Q Consensus        18 l~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   96 (218)
                      ++|++|+|||||++++.+... .....++. .+..............+.+||++|...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999877 44554555 6666777777777889999999999988888888999999999999999


Q ss_pred             ChhhHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824           97 RHATFQNVGRWL-RELREHTDPNIIVMLIGNKTDLRHLVAVSTED-GKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        97 ~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (218)
                      ++.++..+..|. .........+.|+++++||+|+.......... ........+.+++++|+.++.|+++++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999999888873 33333344789999999999997654433322 3444555778999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.92  E-value=1.5e-24  Score=147.68  Aligned_cols=165  Identities=25%  Similarity=0.517  Sum_probs=145.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      -.+||.++|++..|||||+-++.++.+.+++..+.|+++..+++.+.+..+.+.|||.+|++++..+.+...+.+-+++|
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-----ccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV-----AVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      +||++.++++..+..|++..+.....- .-|+|++|.|+--..     +.-..+++.+++..+++.|+||+..+.++..+
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~NktA-iPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI  177 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNKTA-IPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI  177 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCCcc-ceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence            999999999999999999998776443 447899999973321     12223467888889999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027824          167 FTEVLTQIYKI  177 (218)
Q Consensus       167 ~~~i~~~i~~~  177 (218)
                      |..+.-+++..
T Consensus       178 FK~vlAklFnL  188 (205)
T KOG1673|consen  178 FKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHhCC
Confidence            99888777654

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=1.3e-24  Score=161.91  Aligned_cols=154  Identities=21%  Similarity=0.211  Sum_probs=105.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC-----------chhhhhh
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG-----------QERYRAI   78 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~   78 (218)
                      ....++|+++|.+|+|||||+++|.+..+...+.++  .++....+...    .+.+|||||           ++.+...
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE   79 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence            345689999999999999999999988765444444  34433333333    579999999           4666666


Q ss_pred             hhhhhc----CCcEEEEEEECCChhhH-HH---------HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 027824           79 TSAYYR----GAVGALLVYDVTRHATF-QN---------VGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF  144 (218)
Q Consensus        79 ~~~~~~----~~d~~i~v~d~~~~~s~-~~---------~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  144 (218)
                      +..++.    .++++++|+|..+...+ +.         -..++..+.   ..++|+++|+||+|+.+..   .+...++
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~  153 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEI  153 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHH
Confidence            666654    45688888887643221 00         011122222   2578999999999996533   2345555


Q ss_pred             HHHcCC---------eEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824          145 AEQESL---------YFMETSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       145 ~~~~~~---------~~~~~Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                      ....++         +++++||++| |++++|++|.+.+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            555554         4899999999 999999999887643

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=1.2e-23  Score=152.27  Aligned_cols=156  Identities=15%  Similarity=0.176  Sum_probs=109.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      .|+++|.+++|||||+++|....+...+.++.+.+.....+... .....+.+|||||+..+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999888766544444444433334333 13567899999999999988888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHH------HcCCeEEEEccCCCCCHHHH
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS-TEDGKAFAE------QESLYFMETSALDATNVENA  166 (218)
Q Consensus        94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      |++++...+... .+..+..   .+.|+++|+||+|+....... .+....+..      ....+++++|++++.|++++
T Consensus        82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            998753222111 1222222   568999999999986432111 111111111      12357999999999999999


Q ss_pred             HHHHHHHH
Q 027824          167 FTEVLTQI  174 (218)
Q Consensus       167 ~~~i~~~i  174 (218)
                      +++|.+..
T Consensus       158 ~~~l~~~~  165 (168)
T cd01887         158 LEAILLLA  165 (168)
T ss_pred             HHHHHHhh
Confidence            99998754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.8e-24  Score=151.27  Aligned_cols=159  Identities=18%  Similarity=0.322  Sum_probs=129.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      ....+|+++|-.++||||++++|..++.... .||.|.++....+  .  ++.+.+||.+|++.++.+|..|+++.+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y--k--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY--K--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE--c--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            3468999999999999999999988776544 6898877655544  3  688999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCeEEEEccCCCCCHH
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-----ESLYFMETSALDATNVE  164 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~  164 (218)
                      ||+|.+|++.+...++.+..+..... .+.|+++.+||.|++....+  .++.+....     ....+..|+|.+|+|+.
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~--~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSA--AEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCH--HHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            99999999999988877777766654 78999999999999875432  233322222     34457889999999999


Q ss_pred             HHHHHHHHHHHH
Q 027824          165 NAFTEVLTQIYK  176 (218)
Q Consensus       165 ~~~~~i~~~i~~  176 (218)
                      +.++|+...+.+
T Consensus       168 egl~wl~~~~~~  179 (181)
T KOG0070|consen  168 EGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987754

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.92  E-value=7.9e-24  Score=156.81  Aligned_cols=149  Identities=17%  Similarity=0.183  Sum_probs=107.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc--CcCCCCC------------cccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTK--NEFNLES------------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAIT   79 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   79 (218)
                      .+|+++|++++|||||+++|++  +.+...+            ..+.+.++......+....+.+.+|||||++.|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            5899999999999999999997  4443332            1234455555555555566789999999999999999


Q ss_pred             hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcCCe
Q 027824           80 SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA-VSTEDGKAFAE-------QESLY  151 (218)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~  151 (218)
                      ..+++++|++++|||+++.. +.....|+..+..   .++|+++++||+|+..... ...++..++..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2333334444432   4789999999999965332 12334444442       23678


Q ss_pred             EEEEccCCCCCHHHH
Q 027824          152 FMETSALDATNVENA  166 (218)
Q Consensus       152 ~~~~Sa~~~~~v~~~  166 (218)
                      ++++||++|.|+.++
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999887554

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=1.7e-23  Score=149.91  Aligned_cols=147  Identities=17%  Similarity=0.168  Sum_probs=111.4

Q ss_pred             EEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh------hhhhhhc--CCcEE
Q 027824           18 LIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA------ITSAYYR--GAVGA   89 (218)
Q Consensus        18 l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~~   89 (218)
                      |+|.+|+|||||++++.+..+.....++.+.+.....+.+++  ..+.+|||||+..+..      ++..++.  ++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998875555556556666556666665  4689999999876553      3455564  99999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (218)
                      |+|+|+.+++...   .|...+..   .++|+++++||+|+.....+.. ....++...+.+++++|+.++.|+++++.+
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998865432   33333332   4689999999999976554443 345677777899999999999999999999


Q ss_pred             HHHH
Q 027824          170 VLTQ  173 (218)
Q Consensus       170 i~~~  173 (218)
                      +...
T Consensus       152 l~~~  155 (158)
T cd01879         152 IAEL  155 (158)
T ss_pred             HHHH
Confidence            8775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=2.6e-23  Score=164.60  Aligned_cols=160  Identities=16%  Similarity=0.131  Sum_probs=118.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh----hhhhhhh---hcC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY----RAITSAY---YRG   85 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~   85 (218)
                      ...|+++|.|+||||||+++|++........+.++.......+.+++ ...+.+||+||..+.    ..+...+   ++.
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            57899999999999999999998764333333334444455555543 356899999996421    1233333   457


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824           86 AVGALLVYDVTRH---ATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA  160 (218)
Q Consensus        86 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (218)
                      ++++|+|+|+++.   ++++.+..|..++..+..  .+.|+++|+||+|+..... ..+..+++....+.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999976   678888888888876543  5789999999999976533 233445566667889999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027824          161 TNVENAFTEVLTQI  174 (218)
Q Consensus       161 ~~v~~~~~~i~~~i  174 (218)
                      +|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=2.5e-23  Score=166.01  Aligned_cols=155  Identities=20%  Similarity=0.170  Sum_probs=114.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc---------hhhhhhhhh
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ---------ERYRAITSA   81 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~   81 (218)
                      +..++|+++|.+++|||||+|+|++........+..+.++....+.+.+. ..+.+|||+|.         +.|...+ .
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            45689999999999999999999997754333344445666666666432 47899999996         2232222 3


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027824           82 YYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDAT  161 (218)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (218)
                      .+.++|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.....     ...+ .....+++++||+++.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~  338 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGE  338 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCC
Confidence            478999999999999998888877777766665445789999999999965322     1111 1223468999999999


Q ss_pred             CHHHHHHHHHHH
Q 027824          162 NVENAFTEVLTQ  173 (218)
Q Consensus       162 ~v~~~~~~i~~~  173 (218)
                      |+++++++|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998753

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.90  E-value=6.5e-24  Score=143.21  Aligned_cols=154  Identities=21%  Similarity=0.400  Sum_probs=126.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+.+.++|-.++|||||++.+..+.+.+.-.||.|++..    .++...+.+.+||.+|+..++++|..|.+.+++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            578999999999999999999998888877788886653    3456678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--------CCeEEEEccCCCCCH
Q 027824           93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE--------SLYFMETSALDATNV  163 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v  163 (218)
                      +|+++++.+..-+..+..+..... .++|++|++||.|+++..  +..   .+..+.        .+-+|.+|+++..++
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~~---~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SKI---ALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cHH---HHHHHhCccccccceEEEEEEEEcCCccH
Confidence            999999888777776666655444 789999999999997732  222   223332        345899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027824          164 ENAFTEVLTQIY  175 (218)
Q Consensus       164 ~~~~~~i~~~i~  175 (218)
                      +-+++||+++-.
T Consensus       171 d~~~~Wli~hsk  182 (186)
T KOG0075|consen  171 DITLDWLIEHSK  182 (186)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998653

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=2.2e-23  Score=146.70  Aligned_cols=148  Identities=18%  Similarity=0.233  Sum_probs=107.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch------hhhhhhhhhh--cC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE------RYRAITSAYY--RG   85 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~~~~~~~~--~~   85 (218)
                      ++|+++|.|++|||||+|+|++........|..+.+.....+.+.+  ..+.++|+||.-      ........++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999987666667777887777777777  467999999932      1223333443  68


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027824           86 AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVEN  165 (218)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (218)
                      .|++++|+|+++.+   +-..+...+..   .++|+++++||+|......+.. ....+.+..+++++.+||++++|+++
T Consensus        79 ~D~ii~VvDa~~l~---r~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHH---HHHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999998743   22222333333   5799999999999865444432 36677778899999999999999999


Q ss_pred             HHHHH
Q 027824          166 AFTEV  170 (218)
Q Consensus       166 ~~~~i  170 (218)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=5.3e-23  Score=149.85  Aligned_cols=155  Identities=21%  Similarity=0.186  Sum_probs=109.4

Q ss_pred             EEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh----hhh---hhhhhcCCcEEE
Q 027824           18 LIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY----RAI---TSAYYRGAVGAL   90 (218)
Q Consensus        18 l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d~~i   90 (218)
                      ++|++|+|||||+++|.+........+..+.+.....+.+.+ ...+.+||+||....    ..+   ....++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998865222222223333333343441 356799999996321    222   234567899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027824           91 LVYDVTRH------ATFQNVGRWLRELREHTD-------PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA  157 (218)
Q Consensus        91 ~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (218)
                      +|+|+.++      .+++.+..|...+.....       .+.|+++|+||+|+..................+..++++||
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999988      578887778777765432       37899999999999765444333233444446778999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027824          158 LDATNVENAFTEVLTQ  173 (218)
Q Consensus       158 ~~~~~v~~~~~~i~~~  173 (218)
                      +++.|++++++++...
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=5.9e-23  Score=140.36  Aligned_cols=114  Identities=32%  Similarity=0.640  Sum_probs=88.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCC--CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFN--LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      ||+|+|++|||||||+++|++..+.  ..+.++.+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22223444445455666677776799999999999988888889999999999


Q ss_pred             EECCChhhHHHHHH---HHHHHHhhcCCCCcEEEEEeCCC
Q 027824           93 YDVTRHATFQNVGR---WLRELREHTDPNIIVMLIGNKTD  129 (218)
Q Consensus        93 ~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~ivv~nK~D  129 (218)
                      ||++++.+++.+..   |+..+.... .++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            99999999988754   555555543 5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00436 era GTP-binding protein Era

Probab=99.90  E-value=2.1e-22  Score=156.31  Aligned_cols=152  Identities=18%  Similarity=0.148  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCc-ccceeEEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhhhhhcC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDTAGQERYR--------AITSAYYRG   85 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~   85 (218)
                      +|+++|.+|+|||||+|+|++......+. +.++... ...+...+ ..++.+|||||.....        .....+++.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~-i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR-ISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc-EEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999987643222 2222222 22222222 2468999999964321        123356789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 027824           86 AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDATNVE  164 (218)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  164 (218)
                      +|++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999876654  334444433   4689999999999964322 22334444444444 79999999999999


Q ss_pred             HHHHHHHHHH
Q 027824          165 NAFTEVLTQI  174 (218)
Q Consensus       165 ~~~~~i~~~i  174 (218)
                      +++++|.+.+
T Consensus       154 ~L~~~l~~~l  163 (270)
T TIGR00436       154 FLAAFIEVHL  163 (270)
T ss_pred             HHHHHHHHhC
Confidence            9999987754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=1.9e-22  Score=144.11  Aligned_cols=146  Identities=18%  Similarity=0.217  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhhhhhc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA--------ITSAYYR   84 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   84 (218)
                      ++|+++|++|+|||||++++++..... ...+..+.+.....+...+  ..+.+||+||...+..        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876422 2223333344344444443  5679999999654422        1234667


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027824           85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVE  164 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (218)
                      .+|++++|+|++++.+......|..      ..+.|+++++||+|+......       .....+.+++++||+++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            9999999999998877766544332      357899999999999764433       334456789999999999999


Q ss_pred             HHHHHHHHHH
Q 027824          165 NAFTEVLTQI  174 (218)
Q Consensus       165 ~~~~~i~~~i  174 (218)
                      +++++|...+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.90  E-value=4.6e-22  Score=135.21  Aligned_cols=162  Identities=23%  Similarity=0.354  Sum_probs=133.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCC--CCcccceeEEEEEEEE-ECCeEEEEEEEeCCCchhh-hhhhhhhhcCCcE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL--ESKSTIGVEFATRSLR-IDNKVVKAQIWDTAGQERY-RAITSAYYRGAVG   88 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~   88 (218)
                      .-||+++|..++|||+++..++.+....  ++.+|+. +++...+. ..+..-.+.++||.|...+ ..+-..|+.-+|+
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            4799999999999999999987655433  3446653 33344443 3444557899999997776 6777889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF  167 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (218)
                      +++|||..+++||+.+..+...|..... ..+|+++++||.|+.++++++.+.+..|++...++.+++++.+...+-+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            9999999999999998777777765433 679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027824          168 TEVLTQIY  175 (218)
Q Consensus       168 ~~i~~~i~  175 (218)
                      ..+...+.
T Consensus       168 ~~l~~rl~  175 (198)
T KOG3883|consen  168 TYLASRLH  175 (198)
T ss_pred             HHHHHhcc
Confidence            99988664

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.90  E-value=1.6e-22  Score=144.80  Aligned_cols=139  Identities=17%  Similarity=0.245  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc-----hhhhhhhhhhhcCCcEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ-----ERYRAITSAYYRGAVGA   89 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-----~~~~~~~~~~~~~~d~~   89 (218)
                      +|+++|.+++|||||++++.+... . ...+.++.       +...    .+||+||.     +.+..+ ...++++|++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~i   68 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDML   68 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-c-CccceEEE-------ECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEE
Confidence            799999999999999999876432 1 11222222       2221    26999996     222222 2347899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--eEEEEccCCCCCHHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL--YFMETSALDATNVENAF  167 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~  167 (218)
                      ++|+|++++.++  +..|+..+    ..+.|+++++||+|+.+   ...+...+++.+.++  +++++||++++|++++|
T Consensus        69 l~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         69 IYVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            999999988765  23344433    24678999999999865   334567777777774  89999999999999999


Q ss_pred             HHHHHHHHH
Q 027824          168 TEVLTQIYK  176 (218)
Q Consensus       168 ~~i~~~i~~  176 (218)
                      +++.+.+.+
T Consensus       140 ~~l~~~~~~  148 (158)
T PRK15467        140 DYLASLTKQ  148 (158)
T ss_pred             HHHHHhchh
Confidence            999876644

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=5.7e-22  Score=162.52  Aligned_cols=155  Identities=20%  Similarity=0.245  Sum_probs=117.4

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh--------hh
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI--------TS   80 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~   80 (218)
                      ....++|+++|++|+|||||+|+|++.... ....+..+.++....+.+++  ..+.+|||||...+...        ..
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            345689999999999999999999987542 22335555666666677766  45689999997544322        24


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824           81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA  160 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (218)
                      .+++++|++++|||++++.+++..  |+..+..   .+.|+|+|+||+|+...      ....++...+.+++++|+++ 
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-  345 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-  345 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence            577899999999999998877664  6655532   46899999999999643      12345566778899999998 


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 027824          161 TNVENAFTEVLTQIYKIV  178 (218)
Q Consensus       161 ~~v~~~~~~i~~~i~~~~  178 (218)
                      .|++++|+.+.+.+.+..
T Consensus       346 ~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       346 LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            699999999999887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=2.3e-22  Score=167.13  Aligned_cols=161  Identities=20%  Similarity=0.185  Sum_probs=114.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCc----------hhhhhhh
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ----------ERYRAIT   79 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~   79 (218)
                      +..++|+++|.+++|||||+++|++..+. ....+..+.+.....+..++..  +.+|||+|.          +.+..+.
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHH
Confidence            35699999999999999999999988653 3334555555555566666654  579999994          3333332


Q ss_pred             -hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHH-HHHHcCCeEEEE
Q 027824           80 -SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--STEDGKA-FAEQESLYFMET  155 (218)
Q Consensus        80 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~  155 (218)
                       ..+++.+|++|+|+|++++.++..+. ++..+.   ..+.|+|+|+||+|+.+....  ...+..+ +.....++++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence             34678999999999999988877753 333333   257899999999999653211  1111221 222234789999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHH
Q 027824          156 SALDATNVENAFTEVLTQIYKI  177 (218)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~i~~~  177 (218)
                      ||++|.|++++|..+.+.+...
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~~  384 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALESW  384 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999998866443

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=4.7e-22  Score=168.36  Aligned_cols=157  Identities=19%  Similarity=0.251  Sum_probs=117.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCc-------CCCCCc------ccceeEEEEEEEEE-----CCeEEEEEEEeCCCch
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNE-------FNLESK------STIGVEFATRSLRI-----DNKVVKAQIWDTAGQE   73 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~-------~~~~~~------~t~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~   73 (218)
                      +..+|+++|+.++|||||+++|+...       +...+.      ...|+++....+.+     ++..+.+.+|||||+.
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~   81 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   81 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence            35689999999999999999998752       111121      12244444433322     4566899999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---
Q 027824           74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL---  150 (218)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---  150 (218)
                      +|...+..+++.+|++|+|+|++++.+.+....|...+.    .+.|+++++||+|+....  ......++....++   
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~  155 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDAS  155 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcc
Confidence            999999999999999999999999877777666655442    467999999999986532  12223455555555   


Q ss_pred             eEEEEccCCCCCHHHHHHHHHHHH
Q 027824          151 YFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       151 ~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      .++++||++|.|++++|++|.+.+
T Consensus       156 ~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       156 EAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             eEEEeeccCCCCHHHHHHHHHHhC
Confidence            489999999999999999998755

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=2.3e-22  Score=148.73  Aligned_cols=157  Identities=17%  Similarity=0.112  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC----cCCCCC---cccceeEEEEEEEEEC------------CeEEEEEEEeCCCchh
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN----EFNLES---KSTIGVEFATRSLRID------------NKVVKAQIWDTAGQER   74 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~----~~~~~~---~~t~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~   74 (218)
                      ++|+++|++++|||||+++|+..    .+...+   .+..+.+.....+.+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    121111   1222333322222222            3357899999999876


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHH------
Q 027824           75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA--VSTEDGKAFAE------  146 (218)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~------  146 (218)
                      +..........+|++++|+|+.++........|. .. ..  .+.|+++++||+|+.....  ...++.++...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444444567789999999998754433332222 11 11  3579999999999864322  12222322211      


Q ss_pred             -HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          147 -QESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       147 -~~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                       ..+++++.+||+++.|++++++++..++
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence             1357899999999999999999998876

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.2e-21  Score=158.91  Aligned_cols=161  Identities=17%  Similarity=0.161  Sum_probs=118.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh----hhhhhhhh---hcC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER----YRAITSAY---YRG   85 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~   85 (218)
                      ...|+++|.|+||||||++++++........+.++.......+.+.. ...+.+||+||..+    ...+...+   ++.
T Consensus       158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier  236 (424)
T PRK12297        158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER  236 (424)
T ss_pred             cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence            34899999999999999999998764433334444444444444432 34689999999632    22333334   456


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824           86 AVGALLVYDVTRH---ATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA  160 (218)
Q Consensus        86 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (218)
                      ++++|+|+|+++.   ++++.+..|..++..+..  .++|++||+||+|+...    .+...++....+.+++++||+++
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tg  312 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTG  312 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCC
Confidence            9999999999864   677788888888877643  47899999999998432    23455666666678999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 027824          161 TNVENAFTEVLTQIYKIV  178 (218)
Q Consensus       161 ~~v~~~~~~i~~~i~~~~  178 (218)
                      .|+++++++|.+.+.+..
T Consensus       313 eGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        313 QGLDELLYAVAELLEETP  330 (424)
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            999999999988776543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=3.2e-22  Score=147.30  Aligned_cols=154  Identities=19%  Similarity=0.205  Sum_probs=110.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcc----------------cceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKS----------------TIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI   78 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   78 (218)
                      +|+++|.+|+|||||+++|++.........                ..+.......+...  ...+.+||+||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            589999999999999999998876543321                11222222223233  467899999999988888


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH---------
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--STEDGKAFAEQ---------  147 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---------  147 (218)
                      +..+++.+|++++|+|+.++..... ..++..+..   .+.|+++++||+|+..+...  ..++.++....         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8889999999999999988654432 233333332   57899999999999753221  12233333333         


Q ss_pred             -----cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          148 -----ESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       148 -----~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                           ...+++++||+++.|++++|.++...+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 356799999999999999999998864

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK15494 era GTPase Era; Provisional

Probab=99.89  E-value=5e-22  Score=158.36  Aligned_cols=154  Identities=21%  Similarity=0.333  Sum_probs=105.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-ccceeEEEEEEEEECCeEEEEEEEeCCCchh-hhhhh-------hh
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDTAGQER-YRAIT-------SA   81 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~~   81 (218)
                      ...++|+++|.+|||||||+++|++..+..... +..+.+.....+..++  .++.+|||||... +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            455799999999999999999999887653221 2222233333444444  4679999999742 22221       23


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccC
Q 027824           82 YYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES--LYFMETSAL  158 (218)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  158 (218)
                      .+..+|++++|+|..+  ++.... .|+..+..   .+.|.|+|+||+|+...   ...++.+++...+  ..+|++||+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            4679999999999765  344443 34555543   34677889999998643   2345556655543  579999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027824          159 DATNVENAFTEVLTQI  174 (218)
Q Consensus       159 ~~~~v~~~~~~i~~~i  174 (218)
                      +|.|++++|++|...+
T Consensus       200 tg~gv~eL~~~L~~~l  215 (339)
T PRK15494        200 SGKNIDGLLEYITSKA  215 (339)
T ss_pred             CccCHHHHHHHHHHhC
Confidence            9999999999998755

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=2.7e-22  Score=143.33  Aligned_cols=146  Identities=20%  Similarity=0.134  Sum_probs=100.2

Q ss_pred             EEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhhhhhcCCc
Q 027824           17 VLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA--------ITSAYYRGAV   87 (218)
Q Consensus        17 ~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d   87 (218)
                      +++|.+|+|||||+++|++.... ....+..+.+........++  ..+.+|||||...+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999987522 11223333333334444444  5689999999876443        3345678899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDATNVENA  166 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~  166 (218)
                      ++++|+|..++.+.... .+...+..   .+.|+++|+||+|+.+....     .......+. .++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999876544332 12222222   35899999999999664322     223334555 7899999999999999


Q ss_pred             HHHHHHH
Q 027824          167 FTEVLTQ  173 (218)
Q Consensus       167 ~~~i~~~  173 (218)
                      |+++++.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999864

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=1.5e-21  Score=159.18  Aligned_cols=158  Identities=19%  Similarity=0.163  Sum_probs=113.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh--hhhhhh------hhhc
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER--YRAITS------AYYR   84 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~------~~~~   84 (218)
                      .++|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|...  ...++.      ..++
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            468999999999999999999987765444445555555555655543 2578999999732  122222      3368


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCH
Q 027824           85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNV  163 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  163 (218)
                      .+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+......   .. . ....+.+ ++.+||++|.|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~~-~-~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---RI-D-RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---HH-H-HHhcCCCceEEEeCCCCCCH
Confidence            9999999999999988887766666555554467999999999998642111   11 1 1123555 588999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027824          164 ENAFTEVLTQIYK  176 (218)
Q Consensus       164 ~~~~~~i~~~i~~  176 (218)
                      ++++++|...+..
T Consensus       351 deL~e~I~~~l~~  363 (426)
T PRK11058        351 PLLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999988754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=6.6e-22  Score=164.44  Aligned_cols=155  Identities=23%  Similarity=0.206  Sum_probs=108.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhhhh
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER--------YRAITSAY   82 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   82 (218)
                      +..+|+++|.+|||||||+++|++..... ...+..+.+.....+...+  ..+.+|||||.+.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            45799999999999999999999876432 3334444444444444554  3578999999652        33445667


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027824           83 YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATN  162 (218)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (218)
                      ++.+|++|+|+|++++.++.. ..|...+..   .++|+++|+||+|+....   .+....+....+ ..+++||++|.|
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~g  186 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRG  186 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCC
Confidence            899999999999998765432 233333432   578999999999986421   112222222223 357999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027824          163 VENAFTEVLTQIYK  176 (218)
Q Consensus       163 v~~~~~~i~~~i~~  176 (218)
                      ++++|++++..+.+
T Consensus       187 i~eL~~~i~~~l~~  200 (472)
T PRK03003        187 VGDLLDAVLAALPE  200 (472)
T ss_pred             cHHHHHHHHhhccc
Confidence            99999999987744

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.6e-21  Score=160.24  Aligned_cols=164  Identities=13%  Similarity=0.093  Sum_probs=116.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch----hhhhhh---hhhhcC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----RYRAIT---SAYYRG   85 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~---~~~~~~   85 (218)
                      ...|+|+|.|+||||||+++|++........+.++.......+.+.+  ..+.+||+||..    ....+.   ...+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            57899999999999999999998765443334444555455555554  578999999952    111222   224578


Q ss_pred             CcEEEEEEECCC----hhhHHHHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027824           86 AVGALLVYDVTR----HATFQNVGRWLRELREHT-----------DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL  150 (218)
Q Consensus        86 ~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  150 (218)
                      +|++|+|+|+++    ++.+..+..|..++..+.           ..+.|+|||+||+|+.+..... +..+......++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCC
Confidence            999999999985    345556666666665443           1468999999999996544322 223334445678


Q ss_pred             eEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027824          151 YFMETSALDATNVENAFTEVLTQIYKIVS  179 (218)
Q Consensus       151 ~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~  179 (218)
                      ++|++||++++|+++++.+|.+.+...+.
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999998877554

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.8e-21  Score=130.45  Aligned_cols=155  Identities=20%  Similarity=0.425  Sum_probs=124.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .++|+++|-.++||||++.+|.-+.. ....||.|+++...+.    +++.+.+||.+|++..+.+|+.|+.+..++|||
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            58999999999999999999987665 3445887766544333    567899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHH
Q 027824           93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVENA  166 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      +|..+++.++..+..+..+..... .+.|++|.+||.|++....+  .++..+..     .....+..+++.++.|+.+-
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p--qei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg  169 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP--QEIQDKLELERIRDRNWYVQPSCALSGDGLKEG  169 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH--HHHHHHhccccccCCccEeeccccccchhHHHH
Confidence            999999888888776666655444 78899999999999875433  34444332     23445788999999999999


Q ss_pred             HHHHHHHH
Q 027824          167 FTEVLTQI  174 (218)
Q Consensus       167 ~~~i~~~i  174 (218)
                      |.|+.+.+
T Consensus       170 lswlsnn~  177 (180)
T KOG0071|consen  170 LSWLSNNL  177 (180)
T ss_pred             HHHHHhhc
Confidence            99998754

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.88  E-value=8.3e-22  Score=162.38  Aligned_cols=149  Identities=19%  Similarity=0.205  Sum_probs=111.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh--------hhhh
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI--------TSAY   82 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   82 (218)
                      ..++|+++|.+++|||||+|+|++.... ....+..+.++....+.+++  ..+.+|||+|..++...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3489999999999999999999987642 23334445555555666655  46799999997654322        2346


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027824           83 YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATN  162 (218)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (218)
                      ++++|++++|||++++.+++....|..      ..+.|+++|+||+|+.......        ...+.+++++||++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999999887776544433      3578999999999996533221        33466899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027824          163 VENAFTEVLTQIYK  176 (218)
Q Consensus       163 v~~~~~~i~~~i~~  176 (218)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887643

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=2.3e-21  Score=163.50  Aligned_cols=154  Identities=16%  Similarity=0.185  Sum_probs=112.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      .+..+|+++|++++|||||+++|.+..+.....+..+.+.....+..++.. .+.+|||||++.|..++...+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            356899999999999999999999887765554544455444445444322 6899999999999999988899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC---------CeEEEEccCCCC
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES---------LYFMETSALDAT  161 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~  161 (218)
                      +|+|++++...+....| ..+   ...++|+++++||+|+.+.   +.++..+.+...+         .+++++||++|.
T Consensus       164 LVVda~dgv~~qT~e~i-~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       164 LVVAADDGVMPQTIEAI-SHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEECCCCCCHhHHHHH-HHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            99999875322222222 222   2257899999999998652   2333444433322         479999999999


Q ss_pred             CHHHHHHHHHH
Q 027824          162 NVENAFTEVLT  172 (218)
Q Consensus       162 ~v~~~~~~i~~  172 (218)
                      |++++|+++..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=1.5e-21  Score=161.26  Aligned_cols=160  Identities=23%  Similarity=0.178  Sum_probs=108.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh----------h-
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA----------I-   78 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~-   78 (218)
                      +..++|+++|.+++|||||+++|++..... ...+..+.+.....+..++.  .+.+|||||...+..          . 
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            456899999999999999999999876432 22233333333344444443  679999999643221          1 


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-H----cCCeEE
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-Q----ESLYFM  153 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~  153 (218)
                      ...+++.+|++|+|+|++++.+..... ++..+.   ..+.|+++|+||+|+.+.. ...++...... .    .+++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~---~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLIL---EAGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH---HcCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence            124678999999999999887766543 223332   2578999999999997221 11122222222 2    257899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHHH
Q 027824          154 ETSALDATNVENAFTEVLTQIYKI  177 (218)
Q Consensus       154 ~~Sa~~~~~v~~~~~~i~~~i~~~  177 (218)
                      ++||++|.|++++|+++...+...
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999998866543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=3.6e-21  Score=142.76  Aligned_cols=160  Identities=17%  Similarity=0.179  Sum_probs=107.8

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc----------hhhhh
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ----------ERYRA   77 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~   77 (218)
                      .+.+..++|+++|++|+|||||+++|++..+...+.++.+.+........   ...+.|||+||.          +.+..
T Consensus        19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~   95 (196)
T PRK00454         19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQK   95 (196)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence            34557799999999999999999999987654444455554443333322   257899999994          34444


Q ss_pred             hhhhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCeE
Q 027824           78 ITSAYYRGA---VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--STEDGKAFAEQESLYF  152 (218)
Q Consensus        78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~  152 (218)
                      +...+++.+   +++++++|.+++.+.... .+...+.   ..+.|+++++||+|+....+.  ..+++.+.......++
T Consensus        96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~  171 (196)
T PRK00454         96 LIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV  171 (196)
T ss_pred             HHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence            555555544   678888998876443321 1112222   246889999999998653322  1222444444446789


Q ss_pred             EEEccCCCCCHHHHHHHHHHHH
Q 027824          153 METSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       153 ~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      +++||+++.|++++++.|...+
T Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        172 ILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            9999999999999999987655

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.88  E-value=1.7e-21  Score=142.51  Aligned_cols=150  Identities=20%  Similarity=0.240  Sum_probs=101.2

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc----------hhhhh
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ----------ERYRA   77 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~   77 (218)
                      .+.+..++|+++|++|+|||||++++++..+...+.++.+.+........++   .+.+||+||.          ..+..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            3557789999999999999999999998764333334544444333333332   5899999994          23444


Q ss_pred             hhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--ccCHHHHHHHHHHcC--C
Q 027824           78 ITSAYYR---GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV--AVSTEDGKAFAEQES--L  150 (218)
Q Consensus        78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~  150 (218)
                      +...+++   .++++++|+|++++.+.... .++..+..   .+.|+++++||+|+..+.  +...+++++.....+  .
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~  165 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP  165 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence            4445554   35799999999886554443 22333332   468999999999986532  222344455555543  5


Q ss_pred             eEEEEccCCCCCHH
Q 027824          151 YFMETSALDATNVE  164 (218)
Q Consensus       151 ~~~~~Sa~~~~~v~  164 (218)
                      .+|++||++|+|++
T Consensus       166 ~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       166 SVQLFSSLKKTGID  179 (179)
T ss_pred             ceEEEECCCCCCCC
Confidence            79999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=5e-21  Score=162.04  Aligned_cols=154  Identities=18%  Similarity=0.171  Sum_probs=116.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC---cCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN---EFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      +.|+++|++++|||||+++|++.   .+..++.++.+.+.....+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            46899999999999999999863   34444556666666665666655  67899999999999988888899999999


Q ss_pred             EEEECCCh---hhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHc----CCeEEEEccCCC
Q 027824           91 LVYDVTRH---ATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAV--STEDGKAFAEQE----SLYFMETSALDA  160 (218)
Q Consensus        91 ~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~  160 (218)
                      +|+|++++   .+.+.+    ..+..   .++| +|+++||+|+.+...+  ..++++++....    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            99999984   444332    22322   3567 9999999999764332  223455555543    578999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027824          161 TNVENAFTEVLTQIYK  176 (218)
Q Consensus       161 ~~v~~~~~~i~~~i~~  176 (218)
                      .|+++++..+...+..
T Consensus       152 ~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       152 QGIGELKKELKNLLES  167 (581)
T ss_pred             CCchhHHHHHHHHHHh
Confidence            9999999988765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=6.1e-22  Score=139.37  Aligned_cols=163  Identities=32%  Similarity=0.543  Sum_probs=142.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      -..++++++|..|.|||+++.+++.+.|...+.+|.|.........-+...+++..||+.|++.+..+...++=+..+.|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            45799999999999999999999999999999999999998877766666799999999999999999999988999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      ++||++.+.+..++..|.+.+.... .++|+++++||.|.....  .......+.+..++.|+++|++.+-|++.-|-|+
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence            9999999999999999999998877 559999999999986533  1223445566678999999999999999999999


Q ss_pred             HHHHHH
Q 027824          171 LTQIYK  176 (218)
Q Consensus       171 ~~~i~~  176 (218)
                      ...+..
T Consensus       165 arKl~G  170 (216)
T KOG0096|consen  165 ARKLTG  170 (216)
T ss_pred             hhhhcC
Confidence            887643

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.87  E-value=6.3e-21  Score=163.17  Aligned_cols=156  Identities=19%  Similarity=0.190  Sum_probs=112.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeE--EEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVE--FATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      .+..+|+++|++++|||||+++|....+.....+..+.+  .+...+..++....+.+|||||++.|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            456799999999999999999998877655443333322  223333344455789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-------HHcC--CeEEEEccCC
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFA-------EQES--LYFMETSALD  159 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~  159 (218)
                      +|+|+|++++...+....| ..+   ...++|+|+++||+|+....   .++..+..       ..++  ++++++||++
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            9999999885333332222 222   22578999999999996532   22222222       2223  6899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLTQ  173 (218)
Q Consensus       160 ~~~v~~~~~~i~~~  173 (218)
                      |.|++++|++|...
T Consensus       395 G~GIdeLle~I~~l  408 (742)
T CHL00189        395 GTNIDKLLETILLL  408 (742)
T ss_pred             CCCHHHHHHhhhhh
Confidence            99999999998775

>cd01895 EngA2 EngA2 subfamily

Probab=99.87  E-value=6.1e-21  Score=138.40  Aligned_cols=154  Identities=23%  Similarity=0.208  Sum_probs=102.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh----------hhh-hh
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY----------RAI-TS   80 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~-~~   80 (218)
                      .++|+++|.+|+|||||++++++..... ...+..+.......+..++.  .+.+||+||....          ... ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            4799999999999999999999876432 22233323333334444443  4689999996422          111 12


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-HHc----CCeEEEE
Q 027824           81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFA-EQE----SLYFMET  155 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~----~~~~~~~  155 (218)
                      ..++.+|++++|+|+.++.+..... ++..+..   .+.|+++++||+|+........+...+.. ...    +.+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3567899999999999887655432 2233222   46899999999999765322222222222 222    3689999


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 027824          156 SALDATNVENAFTEVLT  172 (218)
Q Consensus       156 Sa~~~~~v~~~~~~i~~  172 (218)
                      ||+++.|++++++++.+
T Consensus       156 Sa~~~~~i~~~~~~l~~  172 (174)
T cd01895         156 SALTGQGVDKLFDAIDE  172 (174)
T ss_pred             eccCCCCHHHHHHHHHH
Confidence            99999999999998865

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.5e-20  Score=151.71  Aligned_cols=162  Identities=18%  Similarity=0.103  Sum_probs=115.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh-------hhhhhhhhcC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY-------RAITSAYYRG   85 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   85 (218)
                      ...|+++|.|+||||||+|+|++........+.++.......+...+ ...+.++|+||...-       .......++.
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            34899999999999999999998765434434444444444454442 235899999996421       1111235788


Q ss_pred             CcEEEEEEECC---ChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccC
Q 027824           86 AVGALLVYDVT---RHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES--LYFMETSAL  158 (218)
Q Consensus        86 ~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  158 (218)
                      +|++++|+|++   +...++.+..|+.++..+..  .+.|+++|+||+|+....++ .+..+++....+  .+++.+||+
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            99999999998   45677777888888876543  46899999999998654333 233444544444  478999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027824          159 DATNVENAFTEVLTQIYK  176 (218)
Q Consensus       159 ~~~~v~~~~~~i~~~i~~  176 (218)
                      ++.+++++++.|.+.+.+
T Consensus       317 tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CCcCHHHHHHHHHHHhhh
Confidence            999999999999887654

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=7e-21  Score=141.86  Aligned_cols=159  Identities=20%  Similarity=0.172  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCC---CCCcccceeEEEEEEEEEC---------------------------C----
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFN---LESKSTIGVEFATRSLRID---------------------------N----   59 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~---------------------------~----   59 (218)
                      ++|+++|+.|+|||||+..+.+....   .+.....++..........                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            47999999999999999999654211   1111111111111110000                           1    


Q ss_pred             eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--C
Q 027824           60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--S  137 (218)
Q Consensus        60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~  137 (218)
                      ....+.+||+||++.+...+...+..+|++++|+|++++.........+..+...  ...|+++++||+|+......  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1157899999999988887778888999999999998741111111112222221  23579999999999653221  1


Q ss_pred             HHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          138 TEDGKAFAEQ---ESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       138 ~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      .++.+++...   .+.+++++||++++|++++|++|.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            2333444443   267899999999999999999987644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04163 Era Era subfamily

Probab=99.87  E-value=1.2e-20  Score=135.74  Aligned_cols=156  Identities=19%  Similarity=0.125  Sum_probs=102.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhhhhhc
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA--------ITSAYYR   84 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   84 (218)
                      ..+|+++|++|+|||||++++++............... ..........+.+.+||+||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec-eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998765332221111111 11112233346789999999653322        2344578


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 027824           85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE-SLYFMETSALDATNV  163 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v  163 (218)
                      .+|++++|+|++++.+. ....+...+..   .+.|+++++||+|+........+....+.... ..+++++|++++.++
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            89999999999987211 11222333332   36899999999999743332233344444444 368999999999999


Q ss_pred             HHHHHHHHHH
Q 027824          164 ENAFTEVLTQ  173 (218)
Q Consensus       164 ~~~~~~i~~~  173 (218)
                      +++++.|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.86  E-value=2.5e-20  Score=160.87  Aligned_cols=155  Identities=17%  Similarity=0.171  Sum_probs=111.5

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      ..+...|+++|+.++|||||+++|.+..+........+.+.....+..++  ..+.||||||+..|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            45678999999999999999999988776544434443444334444443  5689999999999999998889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHcC--CeEEEEccCCC
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF-------AEQES--LYFMETSALDA  160 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~~  160 (218)
                      |+|||++++..-+....|    ......++|+||++||+|+.+..   .+.....       ...++  ++++++||++|
T Consensus       365 ILVVdAddGv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEEEECCCCCCHhHHHHH----HHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            999999885322222222    22223578999999999996521   1222211       22233  68999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027824          161 TNVENAFTEVLTQ  173 (218)
Q Consensus       161 ~~v~~~~~~i~~~  173 (218)
                      .|++++|++|...
T Consensus       438 ~GI~eLle~I~~~  450 (787)
T PRK05306        438 EGIDELLEAILLQ  450 (787)
T ss_pred             CCchHHHHhhhhh
Confidence            9999999998763

>PRK00089 era GTPase Era; Reviewed

Probab=99.86  E-value=3.3e-20  Score=145.81  Aligned_cols=157  Identities=18%  Similarity=0.165  Sum_probs=103.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhhhhhc
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR--------AITSAYYR   84 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~   84 (218)
                      .-.|+++|.+|||||||+|+|++...........++......+... ...++.+|||||.....        ......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            3569999999999999999999987644332222122212222222 23688999999964321        22334678


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCH
Q 027824           85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATNV  163 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v  163 (218)
                      .+|++++|+|++++.+- .....+..+.   ..+.|+++|+||+|+.............+....+ ..++.+||+++.|+
T Consensus        84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            99999999999883221 1112222222   2468999999999997433333334455555444 57999999999999


Q ss_pred             HHHHHHHHHHH
Q 027824          164 ENAFTEVLTQI  174 (218)
Q Consensus       164 ~~~~~~i~~~i  174 (218)
                      +++++++...+
T Consensus       160 ~~L~~~L~~~l  170 (292)
T PRK00089        160 DELLDVIAKYL  170 (292)
T ss_pred             HHHHHHHHHhC
Confidence            99999998765

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.86  E-value=5e-20  Score=137.13  Aligned_cols=117  Identities=23%  Similarity=0.365  Sum_probs=88.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC-cEEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA-VGALLVY   93 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~   93 (218)
                      +|+++|+++||||+|+++|....+...+. +.............+....+.+||+||+..++..+..+++.+ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVT-SIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccC-cEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            68999999999999999999987655442 222222221221123456789999999999998888899998 9999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCC
Q 027824           94 DVTRH-ATFQNVGRWLRELREH---TDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        94 d~~~~-~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~  132 (218)
                      |+.+. .++..+..|+..+...   ...++|+++++||.|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 6777776666554322   226899999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.86  E-value=2.2e-23  Score=146.16  Aligned_cols=169  Identities=36%  Similarity=0.644  Sum_probs=144.2

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCe-EEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-VVKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      .+++.++++|+|.-|+|||+++.+++...|+..|..+++.++..+...-+.. .+++++||+.|++.+..+..-+++.+.
T Consensus        21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~  100 (229)
T KOG4423|consen   21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH  100 (229)
T ss_pred             hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence            3688999999999999999999999999999999999999987776655544 478899999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCe-EEEEccCCCC
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRHLVA-VSTEDGKAFAEQESLY-FMETSALDAT  161 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~~  161 (218)
                      +.++|||++...+|+.+..|.+.+.....    ...|+++..||+|+..... .......++.+++|+. ++++|++.+.
T Consensus       101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            99999999999999999999999865432    4567889999999865322 2245677788888874 9999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027824          162 NVENAFTEVLTQIYKI  177 (218)
Q Consensus       162 ~v~~~~~~i~~~i~~~  177 (218)
                      ++++.-..+++.++-.
T Consensus       181 ni~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVN  196 (229)
T ss_pred             ChhHHHHHHHHHHHhh
Confidence            9999999998877653

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=2.6e-20  Score=157.98  Aligned_cols=159  Identities=18%  Similarity=0.247  Sum_probs=114.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCc--CCC-----CC------cccceeEEEEEEEEE-----CCeEEEEEEEeCCCc
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNE--FNL-----ES------KSTIGVEFATRSLRI-----DNKVVKAQIWDTAGQ   72 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~--~~~-----~~------~~t~~~~~~~~~~~~-----~~~~~~~~i~D~~G~   72 (218)
                      ++..+|+++|+.++|||||+.+|+...  +..     ..      ..+.++++....+.+     ++..+.+.+|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            456799999999999999999998632  110     00      012233333222222     455789999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-
Q 027824           73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-  151 (218)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  151 (218)
                      .+|...+..+++.+|++|+|+|++++...+....|.....    .+.|+++|+||+|+.....  .....++....++. 
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~  158 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCc
Confidence            9999999999999999999999998766666555544332    4689999999999865321  12233444445553 


Q ss_pred             --EEEEccCCCCCHHHHHHHHHHHHH
Q 027824          152 --FMETSALDATNVENAFTEVLTQIY  175 (218)
Q Consensus       152 --~~~~Sa~~~~~v~~~~~~i~~~i~  175 (218)
                        ++.+||++|.|+++++++|.+.+.
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              899999999999999999987653

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=2e-20  Score=158.55  Aligned_cols=146  Identities=19%  Similarity=0.184  Sum_probs=110.0

Q ss_pred             cCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh------hhhhh--cCCcEEEE
Q 027824           20 GDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI------TSAYY--RGAVGALL   91 (218)
Q Consensus        20 G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~   91 (218)
                      |++|+|||||+|++++......+.+..+.+.....+..++.  .+.+||+||+.++...      ...++  +.+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999998765555566666666666666554  5799999998766443      33333  47899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (218)
                      |+|.++.+.   ...+...+.   ..+.|+++++||+|+.+...+. .+.+++.+..+++++++||++|+|++++++++.
T Consensus        79 VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            999987432   222223332   3578999999999997655544 346778888999999999999999999999998


Q ss_pred             HHH
Q 027824          172 TQI  174 (218)
Q Consensus       172 ~~i  174 (218)
                      +.+
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=4.2e-20  Score=152.81  Aligned_cols=146  Identities=22%  Similarity=0.188  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhhhhhc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER--------YRAITSAYYR   84 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   84 (218)
                      ++|+++|.+|+|||||+++|.+.... ....+..+.+.....+..++  ..+.+|||||...        +......+++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 12224444455555555555  6789999999875        2333456778


Q ss_pred             CCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCC
Q 027824           85 GAVGALLVYDVTRHATFQ--NVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDAT  161 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  161 (218)
                      .+|++|+|+|+.++.+..  .+..|+..      .+.|+++|+||+|+...    .....++ ...++. ++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998864432  23334432      36899999999997441    1222333 345664 8999999999


Q ss_pred             CHHHHHHHHHH
Q 027824          162 NVENAFTEVLT  172 (218)
Q Consensus       162 ~v~~~~~~i~~  172 (218)
                      |++++|+.+..
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999999887

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=2.5e-20  Score=153.94  Aligned_cols=150  Identities=19%  Similarity=0.179  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCc--------hhhhhhhhhhhcC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ--------ERYRAITSAYYRG   85 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~   85 (218)
                      +|+++|.+|+|||||+|+|++..... ...+..+.+.....+...+  ..+.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999876422 2223333444444444444  45899999995        3444556667899


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 027824           86 AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDATNVE  164 (218)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  164 (218)
                      +|++++|+|+.++.+.... .+...+..   .+.|+++|+||+|+......    ..+ ....++ +++++||.+|.|++
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            9999999999876443321 12222222   46899999999998653321    222 334566 69999999999999


Q ss_pred             HHHHHHHHHHH
Q 027824          165 NAFTEVLTQIY  175 (218)
Q Consensus       165 ~~~~~i~~~i~  175 (218)
                      ++++.+...+.
T Consensus       150 ~ll~~i~~~l~  160 (429)
T TIGR03594       150 DLLDAILELLP  160 (429)
T ss_pred             HHHHHHHHhcC
Confidence            99999887663

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.85  E-value=8.7e-21  Score=139.81  Aligned_cols=159  Identities=21%  Similarity=0.253  Sum_probs=106.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCC------------------cccceeEEEEEEEEECCeEEEEEEEeCCCch
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLES------------------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQE   73 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~   73 (218)
                      ..++|+++|+.++|||||+.+|+........                  ....+................+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3589999999999999999999865422110                  0111222222222212444678999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-cCHHHHH-HHHHHc---
Q 027824           74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA-VSTEDGK-AFAEQE---  148 (218)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~-~~~~~~---  148 (218)
                      .|.......+..+|++|+|+|+.++..... ...+..+..   .++|+++++||+|+...+. ...++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            998888888999999999999997644333 222333333   5688999999999972111 0111122 333332   


Q ss_pred             ---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          149 ---SLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       149 ---~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                         .++++.+||.+|.|++++++.|.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               35799999999999999999988754

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd00880 Era_like Era (E

Probab=99.85  E-value=4e-20  Score=131.93  Aligned_cols=151  Identities=19%  Similarity=0.163  Sum_probs=103.8

Q ss_pred             EEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhhhhhcCCcEE
Q 027824           18 LIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-------AITSAYYRGAVGA   89 (218)
Q Consensus        18 l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~   89 (218)
                      ++|++|+|||||++++++.... ....+..+............ ...+.+||+||...+.       .....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987654 22223322333333333321 4578999999976543       2344577899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTE---DGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      ++|+|..+........ |.....   ..+.|+++++||+|+..+......   .........+.+++++|++++.|++++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999876665543 333332   267899999999998764433222   112233335788999999999999999


Q ss_pred             HHHHHHH
Q 027824          167 FTEVLTQ  173 (218)
Q Consensus       167 ~~~i~~~  173 (218)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=5.7e-20  Score=152.04  Aligned_cols=159  Identities=25%  Similarity=0.225  Sum_probs=106.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh----------hhhh-
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER----------YRAI-   78 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-   78 (218)
                      +..++|+++|.+++|||||+++|++.... ....+..+.+.....+..++  ..+.+|||||...          +... 
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            35799999999999999999999986532 22233333333333343444  4568999999532          2111 


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----cCCeEEE
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ----ESLYFME  154 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~  154 (218)
                      ...+++.+|++|+|+|++++.+..... ++..+..   .+.|+++++||+|+.+.... .+...++...    ..+++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEE
Confidence            123678999999999999887665542 2233322   46899999999998643211 1111122221    3578999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHH
Q 027824          155 TSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                      +||+++.|++++|+.+.+.+..
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998876544

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.1e-20  Score=128.99  Aligned_cols=160  Identities=21%  Similarity=0.348  Sum_probs=121.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCc---CC----CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhc
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNE---FN----LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYR   84 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~---~~----~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   84 (218)
                      ..+.|+++|..++|||||+.++....   +.    ..-.+|.|.+.....+  .  ...+.+||.+|++..+++|..|+.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHHH
Confidence            35789999999999999998764321   11    1222555555444433  3  346899999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHH---HH---cCCeEEEEcc
Q 027824           85 GAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFA---EQ---ESLYFMETSA  157 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~---~~~~~~~~Sa  157 (218)
                      .++++|+++|+++++-|+....-++.+..... .++|+++.+||.|+.+...+.  +.+...   ..   ...++..+||
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~--El~~~~~~~e~~~~rd~~~~pvSa  169 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAA--ELDGVFGLAELIPRRDNPFQPVSA  169 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHH--HHHHHhhhhhhcCCccCccccchh
Confidence            99999999999999998887665555544333 899999999999997744332  332222   22   3567999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 027824          158 LDATNVENAFTEVLTQIYKI  177 (218)
Q Consensus       158 ~~~~~v~~~~~~i~~~i~~~  177 (218)
                      .+|+||++...|++..+.++
T Consensus       170 l~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  170 LTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhcccHHHHHHHHHHHHhhc
Confidence            99999999999999988776

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.83  E-value=3.5e-19  Score=154.41  Aligned_cols=153  Identities=16%  Similarity=0.130  Sum_probs=113.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh----------hhhh
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI----------TSAY   82 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~   82 (218)
                      .++|+++|++|||||||+|++++........  .|.++..+...+......+.+||+||..++...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            4789999999999999999999876543333  445555555555555677899999997655321          2223


Q ss_pred             h--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824           83 Y--RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA  160 (218)
Q Consensus        83 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (218)
                      +  ..+|++++|+|.++.+..   ..|...+.+   .+.|+++++||+|+.+.+.+. ...+++.+..+++++.+|+.++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecC
Confidence            2  479999999999886432   223344433   478999999999987655443 4567788889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027824          161 TNVENAFTEVLTQI  174 (218)
Q Consensus       161 ~~v~~~~~~i~~~i  174 (218)
                      +|++++++.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999998887643

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=2.1e-19  Score=136.22  Aligned_cols=158  Identities=18%  Similarity=0.138  Sum_probs=107.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh--------hhhhhhhh
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY--------RAITSAYY   83 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~   83 (218)
                      ..--|+++|.|++|||||+|++++......+....++......+.-. ...++.++||||...-        .......+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            34679999999999999999999998876665444333333444333 3678999999994322        12233457


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCC
Q 027824           84 RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATN  162 (218)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  162 (218)
                      ..+|+++||+|+++...-.. ...+..+..   .+.|+++++||+|...+..........+..... ..++.+||+++.+
T Consensus        84 ~dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n  159 (298)
T COG1159          84 KDVDLILFVVDADEGWGPGD-EFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN  159 (298)
T ss_pred             ccCcEEEEEEeccccCCccH-HHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence            89999999999987432211 122333332   467999999999987755422222233333333 3699999999999


Q ss_pred             HHHHHHHHHHHH
Q 027824          163 VENAFTEVLTQI  174 (218)
Q Consensus       163 v~~~~~~i~~~i  174 (218)
                      ++.+.+.+...+
T Consensus       160 ~~~L~~~i~~~L  171 (298)
T COG1159         160 VDTLLEIIKEYL  171 (298)
T ss_pred             HHHHHHHHHHhC
Confidence            999998887765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=3.9e-19  Score=154.34  Aligned_cols=157  Identities=19%  Similarity=0.187  Sum_probs=109.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCch----------hhhhhh-
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----------RYRAIT-   79 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~-   79 (218)
                      ..++|+++|.+++|||||+++|++.... ....+..+.+.....+.+++..  +.+|||+|..          .+..+. 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999998743 2233444455545555566654  5699999942          222222 


Q ss_pred             hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHH----cCCeEEE
Q 027824           80 SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA-FAEQ----ESLYFME  154 (218)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~  154 (218)
                      ..+++.+|++++|+|++++.+.+.+..| ..+..   .+.|+++|+||+|+.+...  .+.... +...    ..++++.
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i~-~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKVM-SMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            2457899999999999998777765433 33322   5789999999999965322  111221 2111    2356799


Q ss_pred             EccCCCCCHHHHHHHHHHHHHH
Q 027824          155 TSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                      +||++|.|++++|+.+.+.+..
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999887654

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.83  E-value=1.1e-19  Score=122.02  Aligned_cols=156  Identities=24%  Similarity=0.355  Sum_probs=121.3

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      .+....+||+++|-.++|||||+..|...... .-.||.|++  .+.+.+++ .+.+.+||.+|+...+..|..|+.+.|
T Consensus        12 s~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd   87 (185)
T KOG0074|consen   12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVD   87 (185)
T ss_pred             CCCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccc
Confidence            34577899999999999999999999776543 333777755  45555554 478999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--------CCeEEEEccC
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE--------SLYFMETSAL  158 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~  158 (218)
                      ++|||+|.+|..-|+++...+-++....+ ...|+.+..||.|+.....     +.+.+.+.        -..+.+||+.
T Consensus        88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~-----~eeia~klnl~~lrdRswhIq~csal  162 (185)
T KOG0074|consen   88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK-----VEEIALKLNLAGLRDRSWHIQECSAL  162 (185)
T ss_pred             eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc-----hHHHHHhcchhhhhhceEEeeeCccc
Confidence            99999999998888888666666654443 7899999999999854322     23333332        2357899999


Q ss_pred             CCCCHHHHHHHHHH
Q 027824          159 DATNVENAFTEVLT  172 (218)
Q Consensus       159 ~~~~v~~~~~~i~~  172 (218)
                      +++|+.+-.+|+..
T Consensus       163 s~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  163 SLEGSTDGSDWVQS  176 (185)
T ss_pred             cccCccCcchhhhc
Confidence            99999988888765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=3.1e-19  Score=154.95  Aligned_cols=156  Identities=23%  Similarity=0.179  Sum_probs=104.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhhhh
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER--------YRAITSAY   82 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   82 (218)
                      ....+|+++|.+++|||||+|+|++....... .+.|++..............+.+|||||.+.        +......+
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            34578999999999999999999987643222 2333333333322222235689999999652        33444567


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027824           83 YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDAT  161 (218)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  161 (218)
                      ++.+|++|+|+|++++..... ..|...+..   .+.|+|+|+||+|+....    ....++.. .+. ..+++||++|.
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~g~  422 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMHGR  422 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCCCC
Confidence            889999999999987432211 234444432   578999999999985421    11222222 232 35789999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027824          162 NVENAFTEVLTQIYK  176 (218)
Q Consensus       162 ~v~~~~~~i~~~i~~  176 (218)
                      |++++|+++++.+..
T Consensus       423 GI~eLl~~i~~~l~~  437 (712)
T PRK09518        423 GVGDLLDEALDSLKV  437 (712)
T ss_pred             CchHHHHHHHHhccc
Confidence            999999999987643

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.83  E-value=1e-18  Score=132.58  Aligned_cols=151  Identities=25%  Similarity=0.232  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhhhhhcCCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-------AITSAYYRGAV   87 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   87 (218)
                      +|+++|++|+|||||+++|.+........+..+.+.....+.+.+  ..+++||+||..+..       .....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764333333333444455555554  568999999964322       22345789999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------Hhh-----------
Q 027824           88 GALLVYDVTRHA-TFQNVGRWLREL-----------------------------------------REH-----------  114 (218)
Q Consensus        88 ~~i~v~d~~~~~-s~~~~~~~~~~i-----------------------------------------~~~-----------  114 (218)
                      ++++|+|++++. ..+.+...+...                                         ..+           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 333333333211                                         000           


Q ss_pred             -----------c--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          115 -----------T--DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       115 -----------~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                                 .  ..-+|+++|+||+|+..     .+++..++..  ..++++||+++.|++++|+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  02258999999999843     3444455443  4589999999999999999888754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.82  E-value=1.9e-19  Score=148.21  Aligned_cols=157  Identities=15%  Similarity=0.092  Sum_probs=104.9

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCc--CCCC---------------------------CcccceeEEEEEEEEECCe
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE--FNLE---------------------------SKSTIGVEFATRSLRIDNK   60 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~~   60 (218)
                      ..+.++|+++|+.++|||||+.+|+...  ....                           .....+.+.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            3456999999999999999999998521  1100                           0011233333334445555


Q ss_pred             EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc---
Q 027824           61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV--GRWLRELREHTDPNIIVMLIGNKTDLRHLVA---  135 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~---  135 (218)
                      .+.+.|||+||++.|.......+..+|++++|+|+++++++...  ..++... ... ...|+|+++||+|+.+..+   
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~-~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTL-GINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHc-CCCeEEEEEEChhccCccHHHH
Confidence            67899999999998877676678899999999999987533111  1112222 222 2357999999999964222   


Q ss_pred             -cCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 027824          136 -VSTEDGKAFAEQES-----LYFMETSALDATNVENAFT  168 (218)
Q Consensus       136 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~  168 (218)
                       ...++++++++..+     ++++++||++|.|+++.+.
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence             12344566666654     5799999999999987543

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=1.1e-18  Score=147.63  Aligned_cols=159  Identities=14%  Similarity=0.172  Sum_probs=115.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhc--CcCCCCC------------cccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTK--NEFNLES------------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA   77 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   77 (218)
                      ...+|+++|+.++|||||+++|+.  +.+....            ..+.++++......+....+.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            457999999999999999999986  3332211            23456677666666666778999999999999999


Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHH-------cC
Q 027824           78 ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA-VSTEDGKAFAEQ-------ES  149 (218)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~  149 (218)
                      .+..+++.+|++|+|+|+.++...+. ..++..+..   .++|.++++||+|+...+. ...++..++...       ..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            99999999999999999987643332 333333332   5688999999999865322 112233333322       35


Q ss_pred             CeEEEEccCCCC----------CHHHHHHHHHHHH
Q 027824          150 LYFMETSALDAT----------NVENAFTEVLTQI  174 (218)
Q Consensus       150 ~~~~~~Sa~~~~----------~v~~~~~~i~~~i  174 (218)
                      ++++.+||.+|.          ++..+|+.|++.+
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            779999999997          5777777776654

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=3.2e-19  Score=146.92  Aligned_cols=156  Identities=17%  Similarity=0.144  Sum_probs=102.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCC-----------------------------CcccceeEEEEEEEEECCeE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE-----------------------------SKSTIGVEFATRSLRIDNKV   61 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~   61 (218)
                      .+.++|+++|++++|||||+++|+.......                             .....|++.......+....
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            4469999999999999999999984321110                             00123344444444455556


Q ss_pred             EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----c
Q 027824           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQN-VGRWLRELREHTDPNIIVMLIGNKTDLRHLVA----V  136 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----~  136 (218)
                      +.+.+|||||++.|.......+..+|++|+|+|+++...+.. ...++..+...  ...|+++++||+|+....+    .
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~  161 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE  161 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence            789999999998887665566789999999999987322211 12222222221  2246999999999965221    1


Q ss_pred             CHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 027824          137 STEDGKAFAEQES-----LYFMETSALDATNVENAFT  168 (218)
Q Consensus       137 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~  168 (218)
                      ..+++.+++...+     ++++++||++|.|+++...
T Consensus       162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            2234555555544     5799999999999987543

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.81  E-value=9.3e-19  Score=147.57  Aligned_cols=156  Identities=17%  Similarity=0.150  Sum_probs=103.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcc----cceeEEEEEEEE------------ECCeEEEEEEEeCCCchhhhh
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKS----TIGVEFATRSLR------------IDNKVVKAQIWDTAGQERYRA   77 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~----t~~~~~~~~~~~------------~~~~~~~~~i~D~~G~~~~~~   77 (218)
                      .-|+++|++++|||||+++|.+..+......    +.+.........            +......+.+|||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            4699999999999999999998766433222    222222111110            001112388999999999999


Q ss_pred             hhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc------------CHHH--
Q 027824           78 ITSAYYRGAVGALLVYDVTR---HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV------------STED--  140 (218)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~~--  140 (218)
                      ++..+++.+|++++|+|+++   +.+++.+.    .+.   ..+.|+++++||+|+......            ....  
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            99999999999999999997   44444432    222   246899999999999642110            0000  


Q ss_pred             ----------HHHHHH------------H--cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824          141 ----------GKAFAE------------Q--ESLYFMETSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       141 ----------~~~~~~------------~--~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                                ..++..            .  ..++++.+||++|+|+++++.++.....+
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence                      011111            1  13679999999999999999988765443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.81  E-value=8.6e-19  Score=120.81  Aligned_cols=136  Identities=24%  Similarity=0.262  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc----hhhhhhhhhhhcCCcEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ----ERYRAITSAYYRGAVGA   89 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~   89 (218)
                      -||+++|+.|||||||+++|.+...  .+..|..+.+.            =.++||||.    ..+..........+|.+
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V   67 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVV   67 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence            3899999999999999999988654  34455444432            135899993    33444444455699999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFT  168 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~  168 (218)
                      +++.|++++.++-.     ..+...  -..|+|-|+||+|+... ..+.+.++++.+..|+. +|++|+.+|+|++++.+
T Consensus        68 ~ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   68 LLLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             EEEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence            99999998743211     112222  35799999999999732 34556788888888875 89999999999999998


Q ss_pred             HHH
Q 027824          169 EVL  171 (218)
Q Consensus       169 ~i~  171 (218)
                      +|-
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            873

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=1.2e-18  Score=125.72  Aligned_cols=150  Identities=18%  Similarity=0.242  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch----------hhhhhhhhhhc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----------RYRAITSAYYR   84 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~   84 (218)
                      .|+++|++|+|||||++.+.++.+.....++.+.+.....+..+.   .+.+||+||..          .+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996555454445555555444444443   78899999942          23444444443


Q ss_pred             ---CCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHH--HcCCeEEEE
Q 027824           85 ---GAVGALLVYDVTRHATF--QNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--STEDGKAFAE--QESLYFMET  155 (218)
Q Consensus        85 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~  155 (218)
                         +++++++++|..+..+.  ..+..|+..      .+.|+++++||+|+....+.  ..........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               45788999998865322  223334332      24789999999998543221  1122222332  244679999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027824          156 SALDATNVENAFTEVLTQ  173 (218)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~  173 (218)
                      |++++.++++++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=6.8e-20  Score=123.44  Aligned_cols=159  Identities=23%  Similarity=0.325  Sum_probs=118.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ...+|+++|-.|+|||++..++--.... ...|++++++...    ..+++++++||.+|+-..+..|+.|+.+.|++||
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v----~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETV----PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcccc----ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            5689999999999999999988766653 3447777665433    3367889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824           92 VYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLRHLVAVS---TEDGKAFAEQESLYFMETSALDATNVENAF  167 (218)
Q Consensus        92 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (218)
                      |+|.+|++.+..... ++..+....-.+..++|++||.|.....-.+   .....+-.+..-+.+|++||.+|+|++..+
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence            999999876654433 3334433323567889999999986532111   111122233334679999999999999999


Q ss_pred             HHHHHHHH
Q 027824          168 TEVLTQIY  175 (218)
Q Consensus       168 ~~i~~~i~  175 (218)
                      +|+.+.+.
T Consensus       172 DWL~~~l~  179 (182)
T KOG0072|consen  172 DWLQRPLK  179 (182)
T ss_pred             HHHHHHHh
Confidence            99988664

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.81  E-value=7.1e-19  Score=148.85  Aligned_cols=157  Identities=17%  Similarity=0.208  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC--cCCCCC------------cccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN--EFNLES------------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAIT   79 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~--~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   79 (218)
                      .+|+++|+.++|||||+++|+..  .+....            ....++++......+....+.+.||||||+.+|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            47999999999999999999863  222111            1223455555544455556789999999999999888


Q ss_pred             hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HcCCe
Q 027824           80 SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV-STEDGKAFAE-------QESLY  151 (218)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~  151 (218)
                      ..+++.+|++++|+|+.++. ......|+..+..   .++|+|+++||+|+.+.+.. ..++...+..       ...++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            99999999999999998753 3344556666554   46889999999998653321 1233344432       23578


Q ss_pred             EEEEccCCCC----------CHHHHHHHHHHHH
Q 027824          152 FMETSALDAT----------NVENAFTEVLTQI  174 (218)
Q Consensus       152 ~~~~Sa~~~~----------~v~~~~~~i~~~i  174 (218)
                      ++.+||++|.          |+..+|+.|++.+
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            9999999995          7999998888765

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.81  E-value=1.8e-18  Score=131.49  Aligned_cols=113  Identities=19%  Similarity=0.198  Sum_probs=81.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCC--------------C--cccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLE--------------S--KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI   78 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~--------------~--~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   78 (218)
                      +|+++|++++|||||+++|+.......              .  ....+.++......+.....++.+|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999976421100              0  011223333333444445578999999999999888


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      +..+++.+|++++|+|++++... ....|+..+..   .++|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence            88899999999999999986543 23444454443   468999999999986

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=5e-19  Score=132.40  Aligned_cols=149  Identities=25%  Similarity=0.205  Sum_probs=95.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCC-----------------------------cccceeEEEEEEEEECCeEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLES-----------------------------KSTIGVEFATRSLRIDNKVVKAQ   65 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~~~~~~   65 (218)
                      ||+++|++++|||||+++|+........                             ....+++.......+.....++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999764321110                             00022223233333333445789


Q ss_pred             EEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc----CHHHH
Q 027824           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV----STEDG  141 (218)
Q Consensus        66 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~  141 (218)
                      +|||||+..|.......++.+|++|+|+|++++..-.. ......+...  ...++|+|+||+|+......    ...+.
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            99999998887666667899999999999987632221 1112222221  22457889999998653221    12234


Q ss_pred             HHHHHHcC---CeEEEEccCCCCCHHHH
Q 027824          142 KAFAEQES---LYFMETSALDATNVENA  166 (218)
Q Consensus       142 ~~~~~~~~---~~~~~~Sa~~~~~v~~~  166 (218)
                      ++++...+   .+++.+||+++.|+++.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            45555555   35899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=8.2e-18  Score=118.55  Aligned_cols=159  Identities=25%  Similarity=0.375  Sum_probs=119.8

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcC--------CCCCcc--cceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF--------NLESKS--TIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI   78 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~--------~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   78 (218)
                      ......||++.|+.++||||+++++.....        ...+..  ..++......+.+.+. ..+.+++||||++|.-+
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKFM   84 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHHH
Confidence            445668999999999999999999987663        111211  1233333444444442 46799999999999999


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEEc
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE--SLYFMETS  156 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~S  156 (218)
                      |..+.+++.+.|+++|.+.+..+ .....+..+....  .+|++|+.||.|+....  ..++.+++....  ..++++.+
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~~  159 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEID  159 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeeee
Confidence            99999999999999999998888 4444455554432  28999999999998744  345666666654  78999999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 027824          157 ALDATNVENAFTEVLTQ  173 (218)
Q Consensus       157 a~~~~~v~~~~~~i~~~  173 (218)
                      |.++++..+.+..+...
T Consensus       160 a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         160 ATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cccchhHHHHHHHHHhh
Confidence            99999999998887664

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.81  E-value=1e-18  Score=142.71  Aligned_cols=162  Identities=20%  Similarity=0.174  Sum_probs=105.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC---cccceeEEEEE------------------EEEECC------eEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES---KSTIGVEFATR------------------SLRIDN------KVVK   63 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~------------------~~~~~~------~~~~   63 (218)
                      +..++|+++|++++|||||+++|.+.......   ....+......                  ....+.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            45689999999999999999999754221111   01111111100                  000011      1357


Q ss_pred             EEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHH
Q 027824           64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--STEDG  141 (218)
Q Consensus        64 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~  141 (218)
                      +.+||+||++.|...+......+|++++|+|++++.........+..+...  ...|+++++||+|+.+....  ..+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            899999999999888888888999999999999653111222223333222  23468999999999653221  22344


Q ss_pred             HHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          142 KAFAEQE---SLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       142 ~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      .++....   +++++++||++++|+++++++|...+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            4444432   67899999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=7.4e-19  Score=140.26  Aligned_cols=148  Identities=20%  Similarity=0.151  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCC-cccceeEEEEEEEEECCeEEEEEEEeCCCchhh-----h----hhhhhhh
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY-----R----AITSAYY   83 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~----~~~~~~~   83 (218)
                      ..|+++|.|++|||||+|||++....... .|..+.+.........+  ..+.++||+|.+..     .    ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999998765433 25555555555555554  45899999996532     2    2234567


Q ss_pred             cCCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCC
Q 027824           84 RGAVGALLVYDVTRHATFQN--VGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDA  160 (218)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  160 (218)
                      ..||++|||+|...+-+-.+  +..|+.      ..++|+|+|+||+|-..     .+........+|+ .++.+||.+|
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg  150 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHG  150 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhc
Confidence            89999999999987544332  222222      25689999999999642     1222222333555 5899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027824          161 TNVENAFTEVLTQI  174 (218)
Q Consensus       161 ~~v~~~~~~i~~~i  174 (218)
                      .|+.++++.++..+
T Consensus       151 ~Gi~dLld~v~~~l  164 (444)
T COG1160         151 RGIGDLLDAVLELL  164 (444)
T ss_pred             cCHHHHHHHHHhhc
Confidence            99999999999876

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=3.2e-18  Score=145.54  Aligned_cols=155  Identities=17%  Similarity=0.128  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC---cCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN---EFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      -|.++|+.++|||||+++|++.   .+..+.....+++.....+...+ ...+.+||+||++.|.......+.++|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            5889999999999999999863   33333334444444333333322 2347999999999998777778899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC--HHHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVS--TEDGKAFAEQES---LYFMETSALDATNVEN  165 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~  165 (218)
                      |+|++++..-+ ..+.+..+..   .++| +|||+||+|+.++....  .++.+++....+   .+++.+||++|.|+++
T Consensus        81 VVda~eg~~~q-T~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVMAQ-TREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            99998742211 1122233322   2345 57999999996532221  234445554444   6899999999999999


Q ss_pred             HHHHHHHHH
Q 027824          166 AFTEVLTQI  174 (218)
Q Consensus       166 ~~~~i~~~i  174 (218)
                      +++.|....
T Consensus       157 L~~~L~~~~  165 (614)
T PRK10512        157 LREHLLQLP  165 (614)
T ss_pred             HHHHHHHhh
Confidence            999887643

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=2.2e-18  Score=137.61  Aligned_cols=160  Identities=23%  Similarity=0.195  Sum_probs=113.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh---------hhh--hh
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY---------RAI--TS   80 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~--~~   80 (218)
                      ..++|+++|.|++|||||+|++++....... +..|+++......+....-.+.++||.|...-         .+.  ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            4699999999999999999999998865544 34444444444444333345699999993221         111  22


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCeEEEE
Q 027824           81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-----ESLYFMET  155 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~  155 (218)
                      ..+..+|.+++|+|++.+.+-+.    .+.+......+.++++++||.|+.+......++.++....     ..++++++
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD----~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQD----LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHH----HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            45678999999999999866555    2333333347889999999999977654554554433333     25689999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH
Q 027824          156 SALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                      ||+++.+++.+|..+.+....
T Consensus       332 SA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             EecCCCChHHHHHHHHHHHHH
Confidence            999999999999988775443

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.79  E-value=6.2e-18  Score=124.79  Aligned_cols=148  Identities=18%  Similarity=0.145  Sum_probs=98.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCC-------C-------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFN-------L-------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI   78 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~-------~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   78 (218)
                      .++|+++|+.++|||||+++|+.....       .       ......+.+.......+.....++.++||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            478999999999999999999864100       0       00012334444444455555667899999999888777


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc-----C
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAV---STEDGKAFAEQE-----S  149 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~  149 (218)
                      ....+..+|++++|+|+..+-.-+ ....+..+..   .++| +|+++||+|+....+.   ...+++++....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            777788999999999998753322 2223333333   4566 7899999998643221   112344444443     4


Q ss_pred             CeEEEEccCCCCCHH
Q 027824          150 LYFMETSALDATNVE  164 (218)
Q Consensus       150 ~~~~~~Sa~~~~~v~  164 (218)
                      ++++.+||.+|.++.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            689999999998753

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.79  E-value=2.5e-18  Score=140.45  Aligned_cols=163  Identities=20%  Similarity=0.202  Sum_probs=103.7

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC---cccceeEEEEE--EEE----------------EC------CeE
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES---KSTIGVEFATR--SLR----------------ID------NKV   61 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~--~~~----------------~~------~~~   61 (218)
                      ...+.++|+++|+.++|||||+.+|.+.......   ....+.+....  .+.                .+      ...
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            4556799999999999999999999653211111   11122221110  000                00      012


Q ss_pred             EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CH
Q 027824           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--ST  138 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~  138 (218)
                      ..+.+||+||+..|..........+|++++|+|++++. ..+.... +..+...  ...|+++|+||+|+.++.+.  ..
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            57899999999888776666667789999999999643 1111111 2222221  22468999999999654322  12


Q ss_pred             HHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          139 EDGKAFAEQ---ESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       139 ~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      ++.+.++..   .+.+++++||+++.|++++++.|...+
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            334444443   257899999999999999999987654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=1.2e-17  Score=141.39  Aligned_cols=156  Identities=16%  Similarity=0.160  Sum_probs=101.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcc----cceeEEEEEEEE--ECCeE-----E-----EEEEEeCCCchhh
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKS----TIGVEFATRSLR--IDNKV-----V-----KAQIWDTAGQERY   75 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~----t~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~G~~~~   75 (218)
                      +...|+++|++++|||||+++|.+.........    +.+.++......  ..+..     +     .+.+|||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            346799999999999999999987654322221    222222111110  00111     1     2689999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc----CH--------H-
Q 027824           76 RAITSAYYRGAVGALLVYDVTR---HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV----ST--------E-  139 (218)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~----~~--------~-  139 (218)
                      ..++...+..+|++++|+|+++   +.+++.+.    .+..   .++|+++++||+|+......    ..        . 
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9988888899999999999997   45554432    2222   47899999999998521110    00        0 


Q ss_pred             ----------HHHHHHHH---------------cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          140 ----------DGKAFAEQ---------------ESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       140 ----------~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                                +...+...               ..++++.+||++|.|+++++..+...+
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                      01111111               135799999999999999998876544

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.78  E-value=4.6e-18  Score=136.12  Aligned_cols=156  Identities=17%  Similarity=0.195  Sum_probs=112.4

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC-cccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh--------hh
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI--------TS   80 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~   80 (218)
                      ...-++|+++|.|++|||||+|.|++......+ .+.++.++-...+.+++  +.+.+.||.|..+-.+.        ..
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~  291 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAK  291 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHH
Confidence            344689999999999999999999998865544 35555665556666666  67899999996544332        23


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824           81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA  160 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (218)
                      ..++.||.+++|+|.+.+.+-...    ..+. ....+.|+++|.||.|+..+......     ....+.+++.+|++++
T Consensus       292 ~~i~~ADlvL~v~D~~~~~~~~d~----~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~  361 (454)
T COG0486         292 KAIEEADLVLFVLDASQPLDKEDL----ALIE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTG  361 (454)
T ss_pred             HHHHhCCEEEEEEeCCCCCchhhH----HHHH-hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCc
Confidence            457899999999999986322221    1111 33477899999999999775442211     1223457999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027824          161 TNVENAFTEVLTQIYKI  177 (218)
Q Consensus       161 ~~v~~~~~~i~~~i~~~  177 (218)
                      +|++.+.+.|...+...
T Consensus       362 ~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         362 EGLDALREAIKQLFGKG  378 (454)
T ss_pred             cCHHHHHHHHHHHHhhc
Confidence            99999999888776554

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.78  E-value=1.1e-18  Score=141.89  Aligned_cols=166  Identities=26%  Similarity=0.289  Sum_probs=125.0

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      .....+||+++|+.|+||||||-.++...|.+.-.+... .+ .....+....+...|.|++..++-+.....-++.+|+
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i-~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v   82 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RI-LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV   82 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-cc-ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence            334469999999999999999999999988665432211 11 1112334445678999999776666666777899999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcC-C-eEEEEccCCCCC
Q 027824           89 ALLVYDVTRHATFQNV-GRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTED-GKAFAEQES-L-YFMETSALDATN  162 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~  162 (218)
                      +.++|+++++++++.+ ..|+..+.+..+  ..+|+|+|+||+|.......+.+. ...+..++. + ..++|||++-.+
T Consensus        83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            9999999999999999 459999988764  789999999999997655543333 344444332 2 489999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027824          163 VENAFTEVLTQIYK  176 (218)
Q Consensus       163 v~~~~~~i~~~i~~  176 (218)
                      +.++|+..-+++..
T Consensus       163 ~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  163 VSELFYYAQKAVIH  176 (625)
T ss_pred             hHhhhhhhhheeec
Confidence            99999988776644

>PRK12736 elongation factor Tu; Reviewed

Probab=99.77  E-value=1.8e-17  Score=135.02  Aligned_cols=148  Identities=18%  Similarity=0.142  Sum_probs=98.5

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCC--------------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL--------------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY   75 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   75 (218)
                      ..+.++|+++|+.++|||||+++|++.....              ......+.+.......+......+.+||+||+.+|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            4456999999999999999999998631100              00112334444444555555567899999999988


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC--
Q 027824           76 RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVS---TEDGKAFAEQES--  149 (218)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~--  149 (218)
                      .......+..+|++++|+|+.++..-+. ..++..+..   .++| +|+++||+|+.+..+..   .++..++....+  
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            7777667789999999999987532222 222333332   3577 67889999986433221   224455555544  


Q ss_pred             ---CeEEEEccCCCC
Q 027824          150 ---LYFMETSALDAT  161 (218)
Q Consensus       150 ---~~~~~~Sa~~~~  161 (218)
                         ++++.+||+++.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T PRK12736        165 GDDIPVIRGSALKAL  179 (394)
T ss_pred             cCCccEEEeeccccc
Confidence               579999999983

>cd04167 Snu114p Snu114p subfamily

Probab=99.77  E-value=7.1e-18  Score=126.66  Aligned_cols=113  Identities=23%  Similarity=0.318  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCC-----------------cccceeEEEEEEEE--E---CCeEEEEEEEeCCCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLES-----------------KSTIGVEFATRSLR--I---DNKVVKAQIWDTAGQ   72 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~--~---~~~~~~~~i~D~~G~   72 (218)
                      +|+++|+.++|||||+++|+........                 ....+.++....+.  +   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875433210                 01122222222221  1   345688999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      .++......++..+|++++|+|+++..+... ..|+..+..   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9998888888999999999999987765533 334444332   458999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=4.9e-17  Score=117.12  Aligned_cols=162  Identities=17%  Similarity=0.230  Sum_probs=110.5

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC----------chhhhh
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG----------QERYRA   77 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~   77 (218)
                      -|.+....|+++|.+++|||||||+|+++.--.-...|.|.+.....+.+++.   +.+.|.||          .+.+..
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence            35567789999999999999999999997643444466777776666666664   67999999          455566


Q ss_pred             hhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH--HHHH-HHHHHcCCe
Q 027824           78 ITSAYYR---GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST--EDGK-AFAEQESLY  151 (218)
Q Consensus        78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~-~~~~~~~~~  151 (218)
                      +...|++   +..++++++|+..+-.-.+. +++.-+.   ..++|++|++||+|.....+...  ...+ .+.......
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~---~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~  171 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLL---ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD  171 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHH---HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc
Confidence            6666664   45678889998765333221 2222232   26799999999999866433321  1122 122222222


Q ss_pred             --EEEEccCCCCCHHHHHHHHHHHHHH
Q 027824          152 --FMETSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       152 --~~~~Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                        ++..|+..+.|++++...|.+.+..
T Consensus       172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         172 QWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ceEEEEecccccCHHHHHHHHHHHhhc
Confidence              7888999999999999888876643

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.76  E-value=6.9e-18  Score=127.17  Aligned_cols=147  Identities=18%  Similarity=0.137  Sum_probs=93.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCC---------------------------CC--cccceeEEEEEEEEECCeEEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNL---------------------------ES--KSTIGVEFATRSLRIDNKVVKAQ   65 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~---------------------------~~--~~t~~~~~~~~~~~~~~~~~~~~   65 (218)
                      +|+++|++++|||||+.+|+......                           ..  ....+++.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999986431100                           00  01122333333334444557889


Q ss_pred             EEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--ccc
Q 027824           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA-------TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL--VAV  136 (218)
Q Consensus        66 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~  136 (218)
                      +||+||+..+.......++.+|++|+|+|++++.       ..+....| ..... . ...|+++++||+|+...  .+.
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-L-GVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-c-CCCeEEEEEEccccccccccHH
Confidence            9999999888777777788999999999999852       11222222 22221 1 23689999999999732  111


Q ss_pred             CHH----HHHHHHHHc-----CCeEEEEccCCCCCHH
Q 027824          137 STE----DGKAFAEQE-----SLYFMETSALDATNVE  164 (218)
Q Consensus       137 ~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~v~  164 (218)
                      ..+    ++..+....     +++++.+||++|.|++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            112    222233343     3679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12735 elongation factor Tu; Reviewed

Probab=99.76  E-value=3.3e-17  Score=133.55  Aligned_cols=160  Identities=16%  Similarity=0.118  Sum_probs=104.0

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCc-------C---C--C--CCcccceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNE-------F---N--L--ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER   74 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~-------~---~--~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   74 (218)
                      +..+.++|+++|++++|||||+++|++..       +   .  .  ......|++.......+.....++.++||||+..
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            44567999999999999999999998621       0   0  0  0111234444444444554556789999999998


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHHcC-
Q 027824           75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRHLVAV---STEDGKAFAEQES-  149 (218)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~~-  149 (218)
                      |.......+..+|++++|+|+.++...+ ...++..+..   .++|.+ +++||+|+.+..+.   ...+++.++..++ 
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~  163 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence            8776667788999999999998753222 2233333332   457755 57999999643221   1224455555543 


Q ss_pred             ----CeEEEEccCCCC----------CHHHHHHHHHH
Q 027824          150 ----LYFMETSALDAT----------NVENAFTEVLT  172 (218)
Q Consensus       150 ----~~~~~~Sa~~~~----------~v~~~~~~i~~  172 (218)
                          ++++.+||.++.          ++.++++.|..
T Consensus       164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~  200 (396)
T PRK12735        164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDS  200 (396)
T ss_pred             CcCceeEEecchhccccCCCCCcccccHHHHHHHHHh
Confidence                679999999985          45555555544

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.75  E-value=3e-17  Score=133.79  Aligned_cols=149  Identities=17%  Similarity=0.115  Sum_probs=99.0

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcC------C------C--CCcccceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF------N------L--ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER   74 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~------~------~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   74 (218)
                      +..+.++|+++|+.++|||||+++|++...      .      .  ......+++.....+.+......+.+|||||++.
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence            356679999999999999999999974210      0      0  0011233444444455555566789999999998


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHcC-
Q 027824           75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRHLVAVS---TEDGKAFAEQES-  149 (218)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~-  149 (218)
                      |..........+|++++|+|+.++...+. ...+..+..   .++|.+ +++||+|+.+..+..   .+++++++...+ 
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~  163 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence            87666666778999999999987432222 222333332   356655 689999986533221   234566666554 


Q ss_pred             ----CeEEEEccCCCC
Q 027824          150 ----LYFMETSALDAT  161 (218)
Q Consensus       150 ----~~~~~~Sa~~~~  161 (218)
                          ++++.+||.++.
T Consensus       164 ~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       164 PGDDTPIIRGSALKAL  179 (394)
T ss_pred             CccCccEEECcccccc
Confidence                789999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.75  E-value=6.9e-17  Score=127.29  Aligned_cols=167  Identities=17%  Similarity=0.145  Sum_probs=123.9

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc---------hhhhhh
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ---------ERYRAI   78 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~   78 (218)
                      ........|.++|..++|||||+|.|++........-..+.+...+.+.+.+ ...+.+.||.|-         +.|.+.
T Consensus       187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT  265 (411)
T COG2262         187 RSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST  265 (411)
T ss_pred             hcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH
Confidence            4456678999999999999999999998776655555556777777777765 346789999992         223322


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL  158 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (218)
                      . .-...+|.++.|+|++++...+.+..-...+......++|+|+|.||+|+..+..    .......... ..+.+||+
T Consensus       266 L-EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~  339 (411)
T COG2262         266 L-EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAK  339 (411)
T ss_pred             H-HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEec
Confidence            2 2346899999999999998777777777777777667799999999999754332    1111122122 58999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhh
Q 027824          159 DATNVENAFTEVLTQIYKIVSKR  181 (218)
Q Consensus       159 ~~~~v~~~~~~i~~~i~~~~~~~  181 (218)
                      +++|++.+++.|.+.+.......
T Consensus       340 ~~~gl~~L~~~i~~~l~~~~~~~  362 (411)
T COG2262         340 TGEGLDLLRERIIELLSGLRTEV  362 (411)
T ss_pred             cCcCHHHHHHHHHHHhhhcccce
Confidence            99999999999998887554433

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.75  E-value=4.2e-17  Score=124.13  Aligned_cols=156  Identities=16%  Similarity=0.184  Sum_probs=116.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh----hhhhh---hhcC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR----AITSA---YYRG   85 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~---~~~~   85 (218)
                      ...|.++|.|++|||||++.+.+........+.++......++.+++-. ++.+-|+||.-+-.    .+-..   .++.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence            4568899999999999999999887665555666666666666665543 48999999943222    22223   3467


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824           86 AVGALLVYDVTRH---ATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALD  159 (218)
Q Consensus        86 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (218)
                      +..++||+|++.+   ..++.+..+..++..+.+  .+.|.++|+||+|+++...   ....+++....- .++.+||+.
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCCCcEEEeeecc
Confidence            8999999999988   888888887777766655  7899999999999863221   223556665443 499999999


Q ss_pred             CCCHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLT  172 (218)
Q Consensus       160 ~~~v~~~~~~i~~  172 (218)
                      ++++++++..|-+
T Consensus       352 ~egl~~ll~~lr~  364 (366)
T KOG1489|consen  352 GEGLEELLNGLRE  364 (366)
T ss_pred             ccchHHHHHHHhh
Confidence            9999999987754

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.75  E-value=4.6e-17  Score=135.61  Aligned_cols=153  Identities=16%  Similarity=0.156  Sum_probs=115.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch------hhhhhhhhhh--c
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE------RYRAITSAYY--R   84 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~~~~~~~~--~   84 (218)
                      ..+|+++|+|++|||||+|++++.....-..|..+++.........+.  .+++.|.||.-      .-......++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            356999999999999999999998887777787776665555655554  47999999932      2223334443  4


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027824           85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVE  164 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (218)
                      .+|+++-|+|+++.+.-      +....+..+-+.|++++.|++|....+-+. -+.+++.+..|+|++.++|++|.|++
T Consensus        81 ~~D~ivnVvDAtnLeRn------LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLERN------LYLTLQLLELGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHHH------HHHHHHHHHcCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            67999999999985421      222223333678999999999987654444 34677888899999999999999999


Q ss_pred             HHHHHHHHHH
Q 027824          165 NAFTEVLTQI  174 (218)
Q Consensus       165 ~~~~~i~~~i  174 (218)
                      +++..+.+..
T Consensus       154 ~l~~~i~~~~  163 (653)
T COG0370         154 ELKRAIIELA  163 (653)
T ss_pred             HHHHHHHHhc
Confidence            9999887644

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.74  E-value=1.2e-16  Score=121.16  Aligned_cols=163  Identities=20%  Similarity=0.174  Sum_probs=107.1

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch----hhh-----h
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----RYR-----A   77 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~-----~   77 (218)
                      +.+..+.++|+|+|.|++|||||.|.+++.........+.++... ..-.+.....++.++||||.-    ..+     +
T Consensus        66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~-ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s  144 (379)
T KOG1423|consen   66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR-ILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS  144 (379)
T ss_pred             chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeee-eeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence            345567899999999999999999999999988777665544433 333344455689999999931    111     1


Q ss_pred             ---hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-------------cCHHHH
Q 027824           78 ---ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA-------------VSTEDG  141 (218)
Q Consensus        78 ---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-------------~~~~~~  141 (218)
                         .....+.+||.+++|+|+++....-. ...+..+..+  ..+|-|+++||.|......             ++. ..
T Consensus       145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~-~k  220 (379)
T KOG1423|consen  145 VLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK-LK  220 (379)
T ss_pred             hhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccch-hh
Confidence               12234578999999999996322111 1223344433  4678999999999753311             110 01


Q ss_pred             HHHHHH-c------------CC----eEEEEccCCCCCHHHHHHHHHHHH
Q 027824          142 KAFAEQ-E------------SL----YFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       142 ~~~~~~-~------------~~----~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      .++..+ .            |.    .+|.+||++|+|++++-++|..++
T Consensus       221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence            111111 1            12    289999999999999999998754

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.74  E-value=3.3e-17  Score=122.97  Aligned_cols=158  Identities=18%  Similarity=0.305  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccce--eEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----hhhhhcCCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG--VEFATRSLRIDNKVVKAQIWDTAGQERYRAI-----TSAYYRGAV   87 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~~~d   87 (218)
                      ||+++|+.++||||+.+.++++..+.+.. ..+  .+.....+.. ...+.+.+||+||+..+...     ....+++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~-~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~   78 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTL-RLEPTIDVEKSHVRF-LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG   78 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGG-G-----SEEEEEEEC-TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhcc-ccCCcCCceEEEEec-CCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence            79999999999999999999877654442 222  2222222322 23468999999998755443     567789999


Q ss_pred             EEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--cccCH----HHHHHHHHHcC---CeEEEE
Q 027824           88 GALLVYDVTRHA---TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL--VAVST----EDGKAFAEQES---LYFMET  155 (218)
Q Consensus        88 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~~~----~~~~~~~~~~~---~~~~~~  155 (218)
                      ++|||+|+.+.+   .+..+...+..+.... +++.+.|+++|+|+..+  +....    +...+.+...+   +.++.|
T Consensus        79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T  157 (232)
T PF04670_consen   79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT  157 (232)
T ss_dssp             EEEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred             EEEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence            999999998443   3444455555555554 78999999999998542  11111    12233333445   789999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH
Q 027824          156 SALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                      |..+ +.+-+.|..+++.+..
T Consensus       158 SI~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  158 SIWD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             -TTS-THHHHHHHHHHHTTST
T ss_pred             cCcC-cHHHHHHHHHHHHHcc
Confidence            9998 6888888888886653

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>CHL00071 tufA elongation factor Tu

Probab=99.73  E-value=1.8e-16  Score=129.69  Aligned_cols=150  Identities=15%  Similarity=0.105  Sum_probs=100.1

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCC--------------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL--------------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY   75 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   75 (218)
                      ..+.++|+++|++++|||||+++|++.....              ......+++.......+.....++.+.|+||+..|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            4556999999999999999999998742110              00112344444444445445567889999999888


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC--
Q 027824           76 RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVS---TEDGKAFAEQES--  149 (218)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~--  149 (218)
                      .......+..+|++++|+|+..+..-+ ....+..+..   .++| +|+++||+|+.+..+..   .+++..+....+  
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~  164 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP  164 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            777777788999999999998753222 2222333332   4577 77899999996533221   124455555433  


Q ss_pred             ---CeEEEEccCCCCCH
Q 027824          150 ---LYFMETSALDATNV  163 (218)
Q Consensus       150 ---~~~~~~Sa~~~~~v  163 (218)
                         ++++.+||.+|.++
T Consensus       165 ~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        165 GDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCcceEEEcchhhcccc
Confidence               68999999988743

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=2.4e-16  Score=120.85  Aligned_cols=157  Identities=18%  Similarity=0.161  Sum_probs=109.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch-----hhhh---h-hhhh
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE-----RYRA---I-TSAY   82 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~---~-~~~~   82 (218)
                      ....|+|.|.|+||||||++.+++........|.++-.++...+...  ...++++||||.-     +...   . ..+.
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            45789999999999999999999988777666666555555555444  4578999999931     1111   1 1112


Q ss_pred             hcCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824           83 YRGAVGALLVYDVTR--HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALD  159 (218)
Q Consensus        83 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (218)
                      -.-.++++|+||.+.  +.+++.-..++..+.....  .|+++|.||+|+.....+.  ++.......+. ....+++..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeee
Confidence            234678999999984  5677777778888887763  8999999999987644443  33333444443 477788888


Q ss_pred             CCCHHHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLTQI  174 (218)
Q Consensus       160 ~~~v~~~~~~i~~~i  174 (218)
                      +.+++.+-..+....
T Consensus       321 ~~~~d~~~~~v~~~a  335 (346)
T COG1084         321 GCGLDKLREEVRKTA  335 (346)
T ss_pred             hhhHHHHHHHHHHHh
Confidence            888887766665543

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.72  E-value=9.9e-17  Score=120.39  Aligned_cols=113  Identities=19%  Similarity=0.216  Sum_probs=79.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCC----------------CcccceeEEEEEEEEEC--------CeEEEEEEEeCC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLE----------------SKSTIGVEFATRSLRID--------NKVVKAQIWDTA   70 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------~~~~~~~i~D~~   70 (218)
                      +|+++|+.++|||||+.+|+.......                .....++......+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999976432110                00111111122222232        336889999999


Q ss_pred             CchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        71 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      |+..|......+++.+|++++|+|+.++...+....| ..+.   ..++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQAL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCCcc
Confidence            9999999999999999999999999987655442222 2222   2467999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.72  E-value=3.6e-16  Score=117.81  Aligned_cols=154  Identities=19%  Similarity=0.184  Sum_probs=96.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcc-----------------------cceeEEEEEEE-------------EEC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKS-----------------------TIGVEFATRSL-------------RID   58 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~-----------------------t~~~~~~~~~~-------------~~~   58 (218)
                      ||+++|+.++|||||+.+|..+.+......                       ..+.+.....+             .+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999987655331110                       01111000000             001


Q ss_pred             CeEEEEEEEeCCCchhhhhhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824           59 NKVVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV  136 (218)
Q Consensus        59 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  136 (218)
                      .....+.+.|+||+..|.......+.  .+|++++|+|+..+..-. ...++..+..   .++|+++++||+|+......
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            11346899999999988665544443  689999999998754322 2233333333   46889999999998543221


Q ss_pred             C--HHHHHHHHH--------------------------HcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824          137 S--TEDGKAFAE--------------------------QESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus       137 ~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      .  ..+..++..                          ...+++|.+|+.+|+|++++...|..
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            1  112222222                          01348999999999999999877643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04169 RF3 RF3 subfamily

Probab=99.71  E-value=5.1e-16  Score=119.96  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=80.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCc--------------------ccceeEEEEEEEEECCeEEEEEEEeCCCch
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESK--------------------STIGVEFATRSLRIDNKVVKAQIWDTAGQE   73 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~--------------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~   73 (218)
                      .+|+++|++++|||||+++|+.........                    ...+.++......+....+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            579999999999999999997532110000                    001233334444555566889999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027824           74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL  133 (218)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  133 (218)
                      +|.......++.+|++|+|+|++++.... ...++.....   .++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence            88877777889999999999998764322 2233333322   57899999999998653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.70  E-value=1.5e-15  Score=112.73  Aligned_cols=162  Identities=11%  Similarity=0.131  Sum_probs=97.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCccccee---EEEEEEEEECCeEEEEEEEeCCCchhhhh-----hhhhhhc
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGV---EFATRSLRIDNKVVKAQIWDTAGQERYRA-----ITSAYYR   84 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~   84 (218)
                      +++|+++|.+|+|||||+|.|++.........+.+.   +.....+... ....+.+||+||......     +....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            378999999999999999999986553322222221   1111111111 123689999999643221     1222356


Q ss_pred             CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-----------cCHHHHHHHHH----Hc
Q 027824           85 GAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHLVA-----------VSTEDGKAFAE----QE  148 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~----~~  148 (218)
                      .+|+++++.+.  +  +... ..|+..+...   +.|+++|+||+|+....+           ...++.++...    ..
T Consensus        80 ~~d~~l~v~~~--~--~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST--R--FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC--C--CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            78988887432  2  2222 3455555543   578999999999843211           11111222222    22


Q ss_pred             C---CeEEEEccC--CCCCHHHHHHHHHHHHHHHHhhhh
Q 027824          149 S---LYFMETSAL--DATNVENAFTEVLTQIYKIVSKRA  182 (218)
Q Consensus       149 ~---~~~~~~Sa~--~~~~v~~~~~~i~~~i~~~~~~~~  182 (218)
                      +   -++|-+|+.  .+.++..+.+.|+..+-+.+..-.
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~~  191 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHVF  191 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHHH
Confidence            2   258999998  568999999999999887765543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=1.7e-15  Score=123.12  Aligned_cols=158  Identities=16%  Similarity=0.199  Sum_probs=111.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC-eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN-KVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..-|.+||+...|||||+..+-.........-..+-.+.-..+..+. ..-.+.++|||||+.|..++..-..-+|.+|+
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL   84 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL   84 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence            46689999999999999999977665333223333333333333331 23468999999999999999888888999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC---------CeEEEEccCCCCC
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES---------LYFMETSALDATN  162 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~  162 (218)
                      |++++|+--.+.    ...+......+.|++|++||+|.++.   +......-..++|         ..++.+||++|+|
T Consensus        85 VVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G  157 (509)
T COG0532          85 VVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG  157 (509)
T ss_pred             EEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence            999998643333    33333334478999999999999742   2233333333333         4689999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027824          163 VENAFTEVLTQIYKI  177 (218)
Q Consensus       163 v~~~~~~i~~~i~~~  177 (218)
                      +++++..+.-.....
T Consensus       158 i~eLL~~ill~aev~  172 (509)
T COG0532         158 IDELLELILLLAEVL  172 (509)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998887655444

>cd01850 CDC_Septin CDC/Septin

Probab=99.69  E-value=4.8e-16  Score=120.64  Aligned_cols=142  Identities=13%  Similarity=0.201  Sum_probs=92.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCC----------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh-----
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLE----------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA-----   77 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   77 (218)
                      .++|+|+|.+|+|||||+|+|++..+...          ..+|...+.....+..++..+.+.+|||||......     
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            58999999999999999999999876543          234444555555666677778999999999322110     


Q ss_pred             ---------------------hhhhhhc--CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027824           78 ---------------------ITSAYYR--GAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL  133 (218)
Q Consensus        78 ---------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  133 (218)
                                           .+...+.  .+|+++|+++.+.. .+... ...++.+.    ..+|+|+|+||+|+...
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~  158 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence                                 0101222  46778888887642 11111 22233332    36899999999998542


Q ss_pred             --cccCHHHHHHHHHHcCCeEEEEccCC
Q 027824          134 --VAVSTEDGKAFAEQESLYFMETSALD  159 (218)
Q Consensus       134 --~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (218)
                        ........++.+..+++++|......
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence              22334456677778899988766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.69  E-value=4.9e-16  Score=126.99  Aligned_cols=149  Identities=24%  Similarity=0.187  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCC-------------c------------------ccceeEEEEEEEEECCeEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLES-------------K------------------STIGVEFATRSLRIDNKVV   62 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~-------------~------------------~t~~~~~~~~~~~~~~~~~   62 (218)
                      ++|+++|+.++|||||+.+|+........             .                  ..-+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999643211100             0                  0112222233333344456


Q ss_pred             EEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH----
Q 027824           63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST----  138 (218)
Q Consensus        63 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~----  138 (218)
                      ++.+|||||++.|.......+..+|++|+|+|+..+..-+..+.| ..+...  ...++|+++||+|+....+...    
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL--GIRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc--CCCcEEEEEEecccccchHHHHHHHH
Confidence            789999999999877666778899999999999875332222222 222222  1246899999999865322111    


Q ss_pred             HHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 027824          139 EDGKAFAEQES---LYFMETSALDATNVEN  165 (218)
Q Consensus       139 ~~~~~~~~~~~---~~~~~~Sa~~~~~v~~  165 (218)
                      ++...+....+   ++++.+||.+|+|+++
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            12233334433   4699999999999886

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03126 Elongation factor Tu; Provisional

Probab=99.69  E-value=1.2e-15  Score=126.32  Aligned_cols=150  Identities=15%  Similarity=0.100  Sum_probs=100.3

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcC------CC--------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF------NL--------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER   74 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~------~~--------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   74 (218)
                      ...+.++|+++|++++|||||+++|+....      ..        ......+++.......+......+.++|+||+..
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            345679999999999999999999985211      00        0112233444444444444456789999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc--
Q 027824           75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAV---STEDGKAFAEQE--  148 (218)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~--  148 (218)
                      |.......+..+|++++|+|+.++..-+. .+++..+..   .++| +|+++||+|+.+..+.   ..+++..+....  
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            98777777889999999999987643332 333333433   4577 7889999999653222   112344555543  


Q ss_pred             ---CCeEEEEccCCCCC
Q 027824          149 ---SLYFMETSALDATN  162 (218)
Q Consensus       149 ---~~~~~~~Sa~~~~~  162 (218)
                         +++++.+|+.++.+
T Consensus       233 ~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        233 PGDDIPIISGSALLALE  249 (478)
T ss_pred             CcCcceEEEEEcccccc
Confidence               56799999988753

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.69  E-value=8.7e-16  Score=128.62  Aligned_cols=119  Identities=17%  Similarity=0.203  Sum_probs=82.4

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCc--CCCC-----------C-------cccceeEEEEEEEEECCeEEEEEEEe
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNE--FNLE-----------S-------KSTIGVEFATRSLRIDNKVVKAQIWD   68 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~--~~~~-----------~-------~~t~~~~~~~~~~~~~~~~~~~~i~D   68 (218)
                      +.....+|+++|++++|||||+++|+...  ....           .       ....+..+......+....+.+.+||
T Consensus         6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD   85 (526)
T PRK00741          6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD   85 (526)
T ss_pred             hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence            34567899999999999999999996411  1000           0       01113333333344444557899999


Q ss_pred             CCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        69 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      |||+.+|......+++.+|++|+|+|++++.... ...++.....   .++|+++++||+|+.
T Consensus        86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh---cCCCEEEEEECCccc
Confidence            9999999877777889999999999998763222 2333333322   578999999999985

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=2.8e-16  Score=121.52  Aligned_cols=114  Identities=18%  Similarity=0.162  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCC----------------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLE----------------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI   78 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   78 (218)
                      +|+++|++++|||||+++|+.......                .....+++.......+.....++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999974221100                0011223333333333334578899999999888888


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      +...++.+|++|+|+|+.++..-.. ...+..+..   .++|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            8889999999999999987543222 222333332   5689999999999865

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.69  E-value=7.9e-16  Score=118.55  Aligned_cols=165  Identities=18%  Similarity=0.142  Sum_probs=115.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh----hhhhhhhh---hcC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER----YRAITSAY---YRG   85 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~   85 (218)
                      ..-|.++|.|++|||||++.+.+........|.++.....-.+.... .-.+.+-|+||.-+    -..+-..|   +..
T Consensus       159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            34577999999999999999998876655556655555555555532 33578999999422    22233333   457


Q ss_pred             CcEEEEEEECCChh---hHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe--EEEEccC
Q 027824           86 AVGALLVYDVTRHA---TFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY--FMETSAL  158 (218)
Q Consensus        86 ~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~Sa~  158 (218)
                      +.++++|+|++..+   ..+.......++..+..  .+.|.+||+||+|+..+.+......+.+.+..+..  ++ +|+.
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~-ISa~  316 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL-ISAL  316 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee-eehh
Confidence            88999999998543   35566666666666543  68899999999998665554444445555544443  33 9999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q 027824          159 DATNVENAFTEVLTQIYKIVS  179 (218)
Q Consensus       159 ~~~~v~~~~~~i~~~i~~~~~  179 (218)
                      ++.|++++...+.+.+.+...
T Consensus       317 t~~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         317 TREGLDELLRALAELLEETKA  337 (369)
T ss_pred             cccCHHHHHHHHHHHHHHhhh
Confidence            999999999999887777654

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1.4e-16  Score=123.75  Aligned_cols=147  Identities=18%  Similarity=0.204  Sum_probs=92.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCc------------------ccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESK------------------STIGVEFATRSLRIDNKVVKAQIWDTAGQERYR   76 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~------------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   76 (218)
                      +|+++|++|+|||||+++++.........                  ...+.......+..  ..+.+.+|||||+..+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW--KGHKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE--CCEEEEEEECcCHHHHH
Confidence            58999999999999999997533211100                  01111112222222  34678999999998888


Q ss_pred             hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcCCeE--E
Q 027824           77 AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTED-GKAFAEQESLYF--M  153 (218)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~--~  153 (218)
                      ..+..+++.+|++++|+|++++........|. .+.   ..++|.++++||+|+...   +..+ ..++....+.++  +
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~---~~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~  151 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD---EAGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL  151 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence            88888899999999999999875554333332 232   246899999999998754   2222 333333345443  3


Q ss_pred             EEccCCCCCHHHHHHHH
Q 027824          154 ETSALDATNVENAFTEV  170 (218)
Q Consensus       154 ~~Sa~~~~~v~~~~~~i  170 (218)
                      .+...++.++..+.+.+
T Consensus       152 ~ip~~~~~~~~~~vd~~  168 (268)
T cd04170         152 QLPIGEGDDFKGVVDLL  168 (268)
T ss_pred             EecccCCCceeEEEEcc
Confidence            34455555554444333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.69  E-value=5.9e-16  Score=128.51  Aligned_cols=154  Identities=22%  Similarity=0.172  Sum_probs=97.8

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC-------------c------------------ccceeEEEEEEEEEC
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-------------K------------------STIGVEFATRSLRID   58 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~-------------~------------------~t~~~~~~~~~~~~~   58 (218)
                      ....++|+++|++++|||||+.+|+........             .                  ..-+++.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            456799999999999999999999755321110             0                  001122223333344


Q ss_pred             CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH
Q 027824           59 NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST  138 (218)
Q Consensus        59 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~  138 (218)
                      ....++.+|||||+..|.......+..+|++++|+|+..+..-.....| ..+....  ..|+|+++||+|+....+...
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg--~~~iIvvvNKiD~~~~~~~~~  180 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG--IKHLVVAVNKMDLVDYSEEVF  180 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC--CCceEEEEEeeccccchhHHH
Confidence            4456789999999988876666667999999999999865322111111 1222211  247899999999964322212


Q ss_pred             HHH----HHHHHHc----CCeEEEEccCCCCCHHHH
Q 027824          139 EDG----KAFAEQE----SLYFMETSALDATNVENA  166 (218)
Q Consensus       139 ~~~----~~~~~~~----~~~~~~~Sa~~~~~v~~~  166 (218)
                      ++.    ..+....    .++++.+||++|.|+++.
T Consensus       181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            222    2223333    367999999999999865

>PRK00049 elongation factor Tu; Reviewed

Probab=99.68  E-value=1.9e-15  Score=123.22  Aligned_cols=149  Identities=17%  Similarity=0.126  Sum_probs=98.0

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCC---C-----------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFN---L-----------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER   74 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~---~-----------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   74 (218)
                      ...+.++|+++|+.++|||||+++|++....   .           ......+.+.......+.....++.++||||+..
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence            3456799999999999999999999873110   0           0011234444444445544556789999999988


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHHc--
Q 027824           75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRHLVAV---STEDGKAFAEQE--  148 (218)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~--  148 (218)
                      |.......+..+|++++|+|+..+..-+ ...++..+..   .++|.+ +++||+|+....+.   ...+.+.+....  
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            8777777788999999999998753322 2233333333   457875 68999999642221   112344444443  


Q ss_pred             ---CCeEEEEccCCCC
Q 027824          149 ---SLYFMETSALDAT  161 (218)
Q Consensus       149 ---~~~~~~~Sa~~~~  161 (218)
                         +++++.+||.++.
T Consensus       164 ~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        164 PGDDTPIIRGSALKAL  179 (396)
T ss_pred             CccCCcEEEeeccccc
Confidence               4689999999875

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=7.2e-16  Score=124.93  Aligned_cols=162  Identities=20%  Similarity=0.229  Sum_probs=118.9

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCC---------------CCcccceeEEEEEEEE-ECCeEEEEEEEeCCCc
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL---------------ESKSTIGVEFATRSLR-IDNKVVKAQIWDTAGQ   72 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~---------------~~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~   72 (218)
                      |.++.-++.++.+...|||||..+|+...-..               +....+++.-....+. .++..+.++++||||+
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            56788999999999999999999987543211               1112222222222222 2356689999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCe
Q 027824           73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV-STEDGKAFAEQESLY  151 (218)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~  151 (218)
                      .+|..-....+.-++++|+|+|++.+-.-+.+..++..+.    .+..+|.|+||+|++..+.- ...+..++......+
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~  211 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE  211 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence            9999888888889999999999998866666666666665    46679999999999874331 122333334334567


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHH
Q 027824          152 FMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       152 ~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      .+.+||++|.+++++|+.|++.+
T Consensus       212 ~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  212 VIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             eEEEEeccCccHHHHHHHHHhhC
Confidence            99999999999999999999876

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.68  E-value=2.2e-15  Score=124.13  Aligned_cols=151  Identities=14%  Similarity=0.150  Sum_probs=102.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCC---------------------------C--CCcccceeEEEEEEEEECCeE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN---------------------------L--ESKSTIGVEFATRSLRIDNKV   61 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~---------------------------~--~~~~t~~~~~~~~~~~~~~~~   61 (218)
                      .+.++|+++|+.++|||||+.+|+.....                           .  ......+++.......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            44589999999999999999988642210                           0  000122334444444555666


Q ss_pred             EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhH-------HHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCC
Q 027824           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATF-------QNVGRWLRELREHTDPNI-IVMLIGNKTDLRHL  133 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~i~~~~~~~~-p~ivv~nK~Dl~~~  133 (218)
                      ..+.++|+||+.+|.......+..+|++|+|+|+++.. |       ......+..+..   .++ ++|+++||+|+...
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP  160 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch
Confidence            78999999999999998888999999999999998741 2       123332232322   455 47889999998621


Q ss_pred             --ccc----CHHHHHHHHHHcC-----CeEEEEccCCCCCHHH
Q 027824          134 --VAV----STEDGKAFAEQES-----LYFMETSALDATNVEN  165 (218)
Q Consensus       134 --~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  165 (218)
                        .+.    ..++++.++...+     ++|+++||.+|+|+.+
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence              111    1334566666655     6799999999999854

>PRK13351 elongation factor G; Reviewed

Probab=99.68  E-value=9.1e-16  Score=133.34  Aligned_cols=120  Identities=17%  Similarity=0.182  Sum_probs=84.0

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCC-------------CCc---ccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-------------ESK---STIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~-------------~~~---~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      +.+...+|+++|+.++|||||+++|+......             .+.   ...+.+.......+....+.+.+|||||+
T Consensus         4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~   83 (687)
T PRK13351          4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH   83 (687)
T ss_pred             ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence            33467899999999999999999998532100             000   00111222222223334578899999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      .++...+..+++.+|++|+|+|++++........|. .+..   .++|+++++||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh---cCCCEEEEEECCCCCC
Confidence            999888899999999999999999876665544442 2322   4789999999999864

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.68  E-value=2e-15  Score=118.87  Aligned_cols=81  Identities=20%  Similarity=0.271  Sum_probs=56.6

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEE---------------------ECC-eEEEEEEEeCCCc-
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLR---------------------IDN-KVVKAQIWDTAGQ-   72 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G~-   72 (218)
                      |+++|.|++|||||+++|++........|..+.+.......                     .++ ..+.+++||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999999875433333333333222221                     122 3478999999997 


Q ss_pred             ---hhhhhhhhh---hhcCCcEEEEEEECC
Q 027824           73 ---ERYRAITSA---YYRGAVGALLVYDVT   96 (218)
Q Consensus        73 ---~~~~~~~~~---~~~~~d~~i~v~d~~   96 (218)
                         +.+..+...   .++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               455555444   489999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.66  E-value=2.8e-15  Score=129.02  Aligned_cols=154  Identities=23%  Similarity=0.171  Sum_probs=97.6

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC------------cc-------------------cceeEEEEEEEEE
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES------------KS-------------------TIGVEFATRSLRI   57 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~------------~~-------------------t~~~~~~~~~~~~   57 (218)
                      +....++|+++|++++|||||+++|+........            ..                   ..|++.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            4556689999999999999999999864322110            00                   0112222222233


Q ss_pred             CCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC
Q 027824           58 DNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS  137 (218)
Q Consensus        58 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~  137 (218)
                      .....++.++||||++.|.......+..+|++++|+|+..+..-+.... +..+...  ...++||++||+|+.+..+..
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~--~~~~iivvvNK~D~~~~~~~~  176 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLL--GIRHVVLAVNKMDLVDYDQEV  176 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHh--CCCeEEEEEEecccccchhHH
Confidence            3344578899999999887666667889999999999986532221111 2222222  225788999999996422211


Q ss_pred             H----HHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 027824          138 T----EDGKAFAEQES---LYFMETSALDATNVEN  165 (218)
Q Consensus       138 ~----~~~~~~~~~~~---~~~~~~Sa~~~~~v~~  165 (218)
                      .    .+..++....+   ++++.+||++|.|+++
T Consensus       177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1    12333344444   4699999999999884

>TIGR00503 prfC peptide chain release factor 3

Probab=99.66  E-value=6.4e-15  Score=123.47  Aligned_cols=119  Identities=16%  Similarity=0.222  Sum_probs=83.3

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcC--cCCCC------------------CcccceeEEEEEEEEECCeEEEEEEEe
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKN--EFNLE------------------SKSTIGVEFATRSLRIDNKVVKAQIWD   68 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~--~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D   68 (218)
                      +.....+|+++|++++|||||+++|+..  .....                  .....++++......++...+.+.+||
T Consensus         7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD   86 (527)
T TIGR00503         7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD   86 (527)
T ss_pred             hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence            4456789999999999999999998531  11100                  001223444444455555668899999


Q ss_pred             CCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        69 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      |||+..|.......++.+|++|+|+|+++... .....++..+..   .++|+++++||+|+.
T Consensus        87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            99998888766778899999999999987522 122334443332   568999999999984

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.65  E-value=5.8e-15  Score=121.59  Aligned_cols=159  Identities=17%  Similarity=0.136  Sum_probs=98.8

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcC------cCCCC--------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhh
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKN------EFNLE--------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY   75 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~------~~~~~--------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   75 (218)
                      ..+.++|+++|+.++|||||+++|.+.      .....        .....|++.......+.....++.++||||+..|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            345689999999999999999999632      10000        0112334444444555555567899999999888


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccCH---HHHHHHHHHc---
Q 027824           76 RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVST---EDGKAFAEQE---  148 (218)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~---  148 (218)
                      .......+..+|++++|+|+.++..-+. .+.+..+..   .++| +|+++||+|+.+..+...   .+.+++....   
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~  213 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP  213 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            7666666678999999999987532222 222333332   4678 578899999975322111   1223333322   


Q ss_pred             --CCeEEEEccC---CCCC-------HHHHHHHHHH
Q 027824          149 --SLYFMETSAL---DATN-------VENAFTEVLT  172 (218)
Q Consensus       149 --~~~~~~~Sa~---~~~~-------v~~~~~~i~~  172 (218)
                        .++++.+|+.   ++.+       +.++++.+..
T Consensus       214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~  249 (447)
T PLN03127        214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE  249 (447)
T ss_pred             CCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence              3678888876   4444       4555555444

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.65  E-value=3.4e-15  Score=122.86  Aligned_cols=164  Identities=16%  Similarity=0.140  Sum_probs=104.5

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcC---CCCCcccceeEEEEEEE---------------EECC-----------
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF---NLESKSTIGVEFATRSL---------------RIDN-----------   59 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~~~---------------~~~~-----------   59 (218)
                      .....++|.++|+...|||||+..|++-..   ..+.....+.+......               .+..           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            446679999999999999999999986432   11111111111100000               0100           


Q ss_pred             -----eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824           60 -----KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV  134 (218)
Q Consensus        60 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  134 (218)
                           ....+.++|+||++.|.......+..+|++++|+|+.++.......+.+..+...  .-.++|+++||+|+.+..
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc--CCCcEEEEEecccccCHH
Confidence                 0236899999999999877777788999999999998742111122223333222  224689999999996532


Q ss_pred             cc--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          135 AV--STEDGKAFAEQ---ESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       135 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      ..  ..++.+++...   .+.+++.+||++|.|++.+++.|...+
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            21  12333444333   367899999999999999998887543

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.64  E-value=8.4e-15  Score=120.78  Aligned_cols=152  Identities=15%  Similarity=0.114  Sum_probs=99.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcC--CC---------------------------CCcccceeEEEEEEEEECCeE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEF--NL---------------------------ESKSTIGVEFATRSLRIDNKV   61 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~~   61 (218)
                      .+.++|+++|+.++|||||+.+|+...-  ..                           ......+.+.......+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            4568999999999999999999875211  00                           000112334444444455566


Q ss_pred             EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC--
Q 027824           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHAT---F---QNVGRWLRELREHTDPNII-VMLIGNKTDLRH--  132 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~--  132 (218)
                      ..+.|+|+||+.+|.......+..+|++++|+|++.+..   +   ....+.+..+..   .++| +|+++||+|...  
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccch
Confidence            789999999999998888888899999999999987531   1   122222233332   3555 678999999532  


Q ss_pred             CcccCH----HHHHHHHHHc-----CCeEEEEccCCCCCHHH
Q 027824          133 LVAVST----EDGKAFAEQE-----SLYFMETSALDATNVEN  165 (218)
Q Consensus       133 ~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~  165 (218)
                      ..+...    ++++++....     +++++.+|+.+|+|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            111122    2333434332     46799999999999864

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.64  E-value=6.9e-15  Score=117.60  Aligned_cols=160  Identities=19%  Similarity=0.219  Sum_probs=117.6

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCC---------------CCCcccceeEEEEEEEEE---CCeEEEEEEEeCC
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFN---------------LESKSTIGVEFATRSLRI---DNKVVKAQIWDTA   70 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~---------------~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~   70 (218)
                      +..+.-+..++.+-..|||||..|++.....               .+....+++.-....+.+   ++..+.++++|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            4556778899999999999999998754321               122233333333333333   5578999999999


Q ss_pred             CchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027824           71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL  150 (218)
Q Consensus        71 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  150 (218)
                      |+-+|.--....+..+.+.++++|++.+-.-+.+.+.+..+.    .+.-+|.|+||+||+.....  ....+...-.|+
T Consensus        85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adpe--rvk~eIe~~iGi  158 (603)
T COG0481          85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADPE--RVKQEIEDIIGI  158 (603)
T ss_pred             CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCHH--HHHHHHHHHhCC
Confidence            999887666667778999999999999876677666666665    46679999999999874331  223344444565


Q ss_pred             e---EEEEccCCCCCHHHHHHHHHHHH
Q 027824          151 Y---FMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       151 ~---~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      .   .+.+||++|.|++++++.|++.+
T Consensus       159 d~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         159 DASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             CcchheeEecccCCCHHHHHHHHHhhC
Confidence            4   78999999999999999999876

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.64  E-value=9.4e-15  Score=111.89  Aligned_cols=158  Identities=19%  Similarity=0.159  Sum_probs=111.6

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhh
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-------AITS   80 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~   80 (218)
                      ..+....+++++|.|++|||||++.|++........+.++.+..+..+.+++  .++++.|+||.-+-.       ....
T Consensus        58 V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vl  135 (365)
T COG1163          58 VKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVL  135 (365)
T ss_pred             EeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceee
Confidence            3556678999999999999999999999887766667777777777777776  567999999842221       2234


Q ss_pred             hhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHhh---------------------------------------------
Q 027824           81 AYYRGAVGALLVYDVTRHAT-FQNVGRWLRELREH---------------------------------------------  114 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~---------------------------------------------  114 (218)
                      ...++||++++|+|+....+ .+.+...+....-.                                             
T Consensus       136 sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n  215 (365)
T COG1163         136 SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN  215 (365)
T ss_pred             eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence            56799999999999986543 33332222221000                                             


Q ss_pred             --------------------cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          115 --------------------TDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       115 --------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                                          ...=+|.++|.||+|+..     .++...+.+..  .++.+||+.+.|++++.+.|...+
T Consensus       216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                                001258899999999855     23344444433  789999999999999988876654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.63  E-value=1.8e-14  Score=106.82  Aligned_cols=158  Identities=20%  Similarity=0.154  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCc--ccceeEEEEEEEEECCeEEEEEEEeCCCchhhh--------hh---hh
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESK--STIGVEFATRSLRIDNKVVKAQIWDTAGQERYR--------AI---TS   80 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~---~~   80 (218)
                      ++|+++|.+|+|||||+|.+++........  +..+...........+  ..+.++||||..+..        .+   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999876543331  1222222222333333  468999999953321        11   11


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccc------CHHHHHHHHHHcCCeE
Q 027824           81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAV------STEDGKAFAEQESLYF  152 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~  152 (218)
                      ....++|++|+|+++.+ .+-+. ...+..+.....  .-.++++++|+.|...+..+      .....+.+.+..+-.|
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            22467899999999876 22111 222333333322  22578999999986543211      1134556666666666


Q ss_pred             EEEcc-----CCCCCHHHHHHHHHHHHH
Q 027824          153 METSA-----LDATNVENAFTEVLTQIY  175 (218)
Q Consensus       153 ~~~Sa-----~~~~~v~~~~~~i~~~i~  175 (218)
                      +..+.     ..+.+++++++.|.+.+.
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~  184 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVK  184 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence            55554     345667777666655443

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=2e-14  Score=116.75  Aligned_cols=156  Identities=17%  Similarity=0.164  Sum_probs=111.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      +++.-|-+||+...|||||+..|-+..........++..+.-..+.++.. -.+.|.||||+..|..++..-..-+|+++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            34677899999999999999999776653332222222232333344422 46899999999999999988888999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc---------CCeEEEEccCCCC
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE---------SLYFMETSALDAT  161 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~  161 (218)
                      +|+.+.|+--.+.    +..|......+.|+||++||+|.++.   +.+...+....+         ++.++.+||++|+
T Consensus       230 LVVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  230 LVVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             EEEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            9999998643333    34444444478999999999998753   333443333333         2468999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027824          162 NVENAFTEVLTQI  174 (218)
Q Consensus       162 ~v~~~~~~i~~~i  174 (218)
                      |++.+-+.+.-..
T Consensus       303 nl~~L~eaill~A  315 (683)
T KOG1145|consen  303 NLDLLEEAILLLA  315 (683)
T ss_pred             ChHHHHHHHHHHH
Confidence            9999887776543

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=1.4e-15  Score=122.02  Aligned_cols=168  Identities=20%  Similarity=0.218  Sum_probs=110.8

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh-------hh--hh
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY-------RA--IT   79 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~--~~   79 (218)
                      ..+.-++|+++|+|++|||||+|.|.+....... |..|++.......++-..+++.+.||.|..+.       ..  ..
T Consensus       264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA  342 (531)
T KOG1191|consen  264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA  342 (531)
T ss_pred             HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence            3445699999999999999999999998876655 55556666666555555678899999996541       11  12


Q ss_pred             hhhhcCCcEEEEEEECC--ChhhHHHHHHHHHHHHhhcC------CCCcEEEEEeCCCCCCC-cccCHHHHHHHHHHc--
Q 027824           80 SAYYRGAVGALLVYDVT--RHATFQNVGRWLRELREHTD------PNIIVMLIGNKTDLRHL-VAVSTEDGKAFAEQE--  148 (218)
Q Consensus        80 ~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~------~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~--  148 (218)
                      ...+..+|++++|+|+.  +-++-..+...+........      ...|+|++.||+|+..+ .+....-.. +....  
T Consensus       343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~~~~~~  421 (531)
T KOG1191|consen  343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YPSAEGR  421 (531)
T ss_pred             HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee-ccccccC
Confidence            34567899999999994  33332222233333322211      34789999999999664 222221111 11111  


Q ss_pred             -CC-eEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027824          149 -SL-YFMETSALDATNVENAFTEVLTQIYKIV  178 (218)
Q Consensus       149 -~~-~~~~~Sa~~~~~v~~~~~~i~~~i~~~~  178 (218)
                       .. ...++|+++++|++.+.+.+.+.+....
T Consensus       422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             cccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence             22 3566999999999999999988776543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.62  E-value=2.1e-14  Score=97.46  Aligned_cols=106  Identities=22%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh---------hhhhhhhhc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY---------RAITSAYYR   84 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   84 (218)
                      +|+++|.+|+|||||+|+|++.... ....+..+.......+.+++..  +.++||||....         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6999999999999999999985332 2222222233333455566655  479999994311         111223348


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027824           85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK  127 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK  127 (218)
                      .+|++++|+|.+++.. +....++..+   . .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l---~-~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILREL---K-NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHH---H-TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHH---h-cCCCEEEEEcC
Confidence            9999999999877422 2223333444   2 67899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK12739 elongation factor G; Reviewed

Probab=99.62  E-value=1.5e-14  Score=125.66  Aligned_cols=117  Identities=18%  Similarity=0.131  Sum_probs=81.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCC------------------CCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL------------------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAG   71 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G   71 (218)
                      .+...+|+++|++++|||||+++|+......                  +.....+.+.....+..  ...++.++||||
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG   82 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTPG   82 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCCC
Confidence            4567899999999999999999997531100                  01122233333333333  346789999999


Q ss_pred             chhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      +..+...+...++.+|++|+|+|+.++...+... .+..+..   .++|+|+++||+|+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence            9888887888899999999999998764433322 2222322   5689999999999863

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.61  E-value=5e-14  Score=114.21  Aligned_cols=83  Identities=19%  Similarity=0.331  Sum_probs=58.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI---------------------D-NKVVKAQIWDTAG   71 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G   71 (218)
                      ++|.++|.|++|||||+++|++........+..+.+.......+                     + ...+.+.+||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999988765433344433333322221                     1 2236789999999


Q ss_pred             c----hhhhhhhhhh---hcCCcEEEEEEECC
Q 027824           72 Q----ERYRAITSAY---YRGAVGALLVYDVT   96 (218)
Q Consensus        72 ~----~~~~~~~~~~---~~~~d~~i~v~d~~   96 (218)
                      .    +....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    3344444445   78999999999996

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.60  E-value=2.1e-14  Score=124.70  Aligned_cols=121  Identities=17%  Similarity=0.159  Sum_probs=83.7

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCC-----CCc-----------ccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-----ESK-----------STIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~-----~~~-----------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      +.+...+|+++|++++|||||+++|+......     ...           ...+++.......+.....++.+|||||+
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~   85 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH   85 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence            45567899999999999999999997422111     000           01223333333333334568899999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027824           73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL  133 (218)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  133 (218)
                      ..+.......++.+|++++|+|+.++...+....| ..+..   .++|+++++||+|+...
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCCC
Confidence            88887788889999999999999986554433333 33322   46899999999999753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=6.5e-15  Score=101.94  Aligned_cols=153  Identities=17%  Similarity=0.262  Sum_probs=112.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .-|++++|-.++|||||++.|..+.. .++.||..  ..+..+.+.+  .++.-+|.+|+-..+..|..++..+|++++.
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccc-cccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            45899999999999999999977665 34445532  2233344444  6789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHH---HHHc-----------C---CeEEE
Q 027824           93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAF---AEQE-----------S---LYFME  154 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~-----------~---~~~~~  154 (218)
                      +|+.|.+-|.+.+..+..+..... ...|+++.+||+|.+.+.  ++++.+..   .+..           +   +.+|.
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm  172 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM  172 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence            999999999888776666654433 689999999999997744  33333221   1111           1   13677


Q ss_pred             EccCCCCCHHHHHHHHHH
Q 027824          155 TSALDATNVENAFTEVLT  172 (218)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~  172 (218)
                      ||...+.+-.+.|.|+..
T Consensus       173 csi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  173 CSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEEEccCccceeeeehhh
Confidence            888887776666766643

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.59  E-value=1.7e-14  Score=108.42  Aligned_cols=162  Identities=19%  Similarity=0.201  Sum_probs=108.4

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEE-EECCeEEEEEEEeCCCch-------hhhhhhhh
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSL-RIDNKVVKAQIWDTAGQE-------RYRAITSA   81 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~G~~-------~~~~~~~~   81 (218)
                      ....++|+++|..|+|||||||+|+.+...+...-..+.+...... .++++  .+.+||+||..       +++.+...
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHH
Confidence            4456899999999999999999999766554443222333322222 23332  47999999944       37777888


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-------ccCHHHHHHHHHH-------
Q 027824           82 YYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV-------AVSTEDGKAFAEQ-------  147 (218)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~~~-------  147 (218)
                      ++...|.++++++..|+.---....|...+. .. .+.++++++|.+|...+-       .......+++..+       
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~-~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDEDFLRDVII-LG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCHHHHHHHHH-hc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999998753222233333332 22 458899999999985431       1111222222221       


Q ss_pred             ---cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824          148 ---ESLYFMETSALDATNVENAFTEVLTQIY  175 (218)
Q Consensus       148 ---~~~~~~~~Sa~~~~~v~~~~~~i~~~i~  175 (218)
                         .--+++.++...+-|++++...+++.+-
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence               1246888899999999999999988765

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.58  E-value=1.9e-14  Score=95.14  Aligned_cols=137  Identities=22%  Similarity=0.214  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc----hhhhhhhhhhhcCCcEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ----ERYRAITSAYYRGAVGA   89 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~   89 (218)
                      -||+++|..|+|||||.+.+.+...  .+..|..+++.       +.    -.+||||.    ..+..........+|++
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~-------d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi   68 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFN-------DK----GDIDTPGEYFEHPRWYHALITTLQDADVI   68 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchh--hhcccceeecc-------Cc----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence            3799999999999999999988654  34345444432       11    16799983    23333334456789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFT  168 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~  168 (218)
                      ++|-+++++++.-.     ..+...  -..|+|-+++|.|+.++..  .+..++|..+.|+. +|++|+.++.|++++++
T Consensus        69 ~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917          69 IYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             eeeecccCccccCC-----cccccc--cccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence            99999999864211     112221  2456999999999987444  45688999998874 99999999999999998


Q ss_pred             HHHH
Q 027824          169 EVLT  172 (218)
Q Consensus       169 ~i~~  172 (218)
                      .|..
T Consensus       140 ~L~~  143 (148)
T COG4917         140 YLAS  143 (148)
T ss_pred             HHHh
Confidence            8754

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.58  E-value=1.8e-14  Score=115.85  Aligned_cols=172  Identities=16%  Similarity=0.195  Sum_probs=123.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh----hhhh-----hh
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY----RAIT-----SA   81 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~-----~~   81 (218)
                      ++.-.++|+|.|++|||||++.++.......+.++++.......+  +.....++++||||.-+.    +...     .+
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsITA  243 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA  243 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence            445789999999999999999999888777666555444333332  344567899999993211    1111     12


Q ss_pred             hhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH---HHHHHHcCCeEEEEc
Q 027824           82 YYRGAVGALLVYDVTR--HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDG---KAFAEQESLYFMETS  156 (218)
Q Consensus        82 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~S  156 (218)
                      ..+--.+|+|+.|++.  +.|+..-..++..+.... .+.|.|+|+||+|+-....++++..   ..+...-+++++++|
T Consensus       244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS  322 (620)
T KOG1490|consen  244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS  322 (620)
T ss_pred             HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence            2223345999999985  567777666777776666 6789999999999977666665432   233333568999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 027824          157 ALDATNVENAFTEVLTQIYKIVSKRAVEA  185 (218)
Q Consensus       157 a~~~~~v~~~~~~i~~~i~~~~~~~~~~~  185 (218)
                      +.+.+||-++-...++.++.++-++....
T Consensus       323 ~~~eegVm~Vrt~ACe~LLa~RVE~Klks  351 (620)
T KOG1490|consen  323 CVQEEGVMDVRTTACEALLAARVEQKLKS  351 (620)
T ss_pred             ccchhceeeHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999877665443

>PRK00007 elongation factor G; Reviewed

Probab=99.58  E-value=7.6e-14  Score=121.19  Aligned_cols=117  Identities=18%  Similarity=0.148  Sum_probs=80.3

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCC--C----------------CCcccceeEEEEEEEEECCeEEEEEEEeCC
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFN--L----------------ESKSTIGVEFATRSLRIDNKVVKAQIWDTA   70 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   70 (218)
                      +.+...+|+++|++++|||||+++|+...-.  .                +.....+.+.....+..  ....+.++|||
T Consensus         6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~--~~~~~~liDTP   83 (693)
T PRK00007          6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KDHRINIIDTP   83 (693)
T ss_pred             cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE--CCeEEEEEeCC
Confidence            4556789999999999999999999742110  0                01122233332233333  34678999999


Q ss_pred             CchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        71 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      |+.+|.......++.+|++++|+|+..+-..+....|. .+..   .++|.|+++||+|+.
T Consensus        84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~---~~~p~iv~vNK~D~~  140 (693)
T PRK00007         84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK---YKVPRIAFVNKMDRT  140 (693)
T ss_pred             CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCCC
Confidence            99888766677788999999999998765444433332 2322   568899999999985

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=8.7e-14  Score=109.96  Aligned_cols=155  Identities=19%  Similarity=0.175  Sum_probs=105.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCC-----------------------------CCcccceeEEEEEEEEECCeE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-----------------------------ESKSTIGVEFATRSLRIDNKV   61 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~   61 (218)
                      .+.++++++|+..+|||||+-+|+...-..                             .....-|.++......+....
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            345899999999999999999987642110                             011223566666666666667


Q ss_pred             EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhh---H--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHAT---F--QNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV  136 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  136 (218)
                      +.+.|.|+||+..|-.....-..+||+.|+|+|+.+.+.   |  .........+.... .-..+||++||+|..+-++.
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wde~  163 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWDEE  163 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccCHH
Confidence            789999999999998888888899999999999988741   1  11111122222222 23458899999999875444


Q ss_pred             CHHHHHH----HHHHc-----CCeEEEEccCCCCCHHHH
Q 027824          137 STEDGKA----FAEQE-----SLYFMETSALDATNVENA  166 (218)
Q Consensus       137 ~~~~~~~----~~~~~-----~~~~~~~Sa~~~~~v~~~  166 (218)
                      .++++..    +.+..     +++|+.+|+..|.|+.+-
T Consensus       164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            4444332    23332     367999999999988653

>PRK09866 hypothetical protein; Provisional

Probab=99.55  E-value=4.2e-13  Score=112.14  Aligned_cols=108  Identities=14%  Similarity=0.141  Sum_probs=72.5

Q ss_pred             EEEEEeCCCchh-----hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC
Q 027824           63 KAQIWDTAGQER-----YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS  137 (218)
Q Consensus        63 ~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~  137 (218)
                      ++.+.||||...     ........+..+|+++||+|+....+... ...+..+.... ...|+|+|+||+|+.+.....
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence            578999999643     22234457899999999999987533332 12233343322 235999999999986433323


Q ss_pred             HHHHHHHHH----HcC---CeEEEEccCCCCCHHHHHHHHHH
Q 027824          138 TEDGKAFAE----QES---LYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus       138 ~~~~~~~~~----~~~---~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      .+...++..    ..+   ..+|.+||+.|.|++++++.|..
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            444555432    222   35999999999999999998876

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.55  E-value=8.3e-15  Score=105.56  Aligned_cols=115  Identities=22%  Similarity=0.368  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhhh---hhcCCcEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTAGQERYRAITSA---YYRGAVGA   89 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~~   89 (218)
                      -.|+++|+.|+|||+|+.+|..+...... .... +. . ...+ ....-.+.++|+||+...+.....   +..++.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS~e-~n-~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTV-TSME-NN-I-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B----SS-EE-E-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCee-cccc-CC-c-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            46999999999999999999998543222 2221 11 1 1111 223346899999999887764443   47889999


Q ss_pred             EEEEECCC-hhhHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCC
Q 027824           90 LLVYDVTR-HATFQNVGRWLRELREH---TDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        90 i~v~d~~~-~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~  132 (218)
                      |||+|.+. ...+..+.+++..+...   ....+|++|+.||.|+..
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            99999974 44555554444443222   237889999999999855

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.53  E-value=8.8e-13  Score=101.15  Aligned_cols=163  Identities=17%  Similarity=0.313  Sum_probs=119.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhhhhhcCC---
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID--NKVVKAQIWDTAGQERYRAITSAYYRGA---   86 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~---   86 (218)
                      .--+|+|+|..++|||||+.+|-+..   ...+..+..+....++.+  +...++.+|-..|.--...+....+...   
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            34689999999999999999997754   444566666655555432  2235788999999776666665554332   


Q ss_pred             -cEEEEEEECCChh-hHHHHHHHHHHHHhh--------------------------------------------------
Q 027824           87 -VGALLVYDVTRHA-TFQNVGRWLRELREH--------------------------------------------------  114 (218)
Q Consensus        87 -d~~i~v~d~~~~~-s~~~~~~~~~~i~~~--------------------------------------------------  114 (218)
                       -.||++.|.+++. -++.+..|...+.++                                                  
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence             3588899999994 456677777666444                                                  


Q ss_pred             -----------cCCCCcEEEEEeCCCCC----CCcccC-------HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824          115 -----------TDPNIIVMLIGNKTDLR----HLVAVS-------TEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus       115 -----------~~~~~p~ivv~nK~Dl~----~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                                 .+.++|++||.+|+|..    .+.+..       ...++.|+..+|+.+|.+|++...|++-+..+|++
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                       11378999999999982    222222       12367888889999999999999999999999999


Q ss_pred             HHHHH
Q 027824          173 QIYKI  177 (218)
Q Consensus       173 ~i~~~  177 (218)
                      ..+..
T Consensus       288 r~yG~  292 (473)
T KOG3905|consen  288 RSYGF  292 (473)
T ss_pred             HhcCc
Confidence            87654

>PRK12740 elongation factor G; Reviewed

Probab=99.52  E-value=2.6e-13  Score=117.93  Aligned_cols=107  Identities=21%  Similarity=0.238  Sum_probs=74.2

Q ss_pred             EcCCCCChHHHHHHHhcCcCCCC------------------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhh
Q 027824           19 IGDSGVGKSNLLSRFTKNEFNLE------------------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITS   80 (218)
Q Consensus        19 ~G~~~~GKssli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   80 (218)
                      +|++++|||||+++|+.......                  .....++......+..  ..+.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence            69999999999999964322100                  0112222222233333  346789999999998887788


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      .+++.+|++++|+|+++.........| ..+..   .++|+++++||+|+.
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            889999999999999987655543333 22322   468999999999985

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.51  E-value=9.6e-13  Score=108.28  Aligned_cols=164  Identities=18%  Similarity=0.362  Sum_probs=117.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhhhhhcCC--
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID--NKVVKAQIWDTAGQERYRAITSAYYRGA--   86 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~--   86 (218)
                      ...-.|+|+|..++|||||+.+|.+..   .+.++.+.+|....+..+  +....+.+|...|...+..+....+...  
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            345789999999999999999987643   344677777766655433  2235689999998777777766555422  


Q ss_pred             --cEEEEEEECCChhhH-HHHHHHHHHHHhh-------------------------------------------------
Q 027824           87 --VGALLVYDVTRHATF-QNVGRWLRELREH-------------------------------------------------  114 (218)
Q Consensus        87 --d~~i~v~d~~~~~s~-~~~~~~~~~i~~~-------------------------------------------------  114 (218)
                        -.+|+|+|.+.|..+ +.+..|+..+..+                                                 
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence              358999999998654 4566666555433                                                 


Q ss_pred             -------------cCCCCcEEEEEeCCCCCC----Cccc-------CHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824          115 -------------TDPNIIVMLIGNKTDLRH----LVAV-------STEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus       115 -------------~~~~~p~ivv~nK~Dl~~----~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                                   .+.++|++||.+|+|...    +...       -..-+|.++..+|+.+|.||++...+++-++.+|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence                         012589999999999732    1111       1122677788899999999999999999999999


Q ss_pred             HHHHHHH
Q 027824          171 LTQIYKI  177 (218)
Q Consensus       171 ~~~i~~~  177 (218)
                      .+.++..
T Consensus       260 ~h~l~~~  266 (472)
T PF05783_consen  260 LHRLYGF  266 (472)
T ss_pred             HHHhccC
Confidence            8888664

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.51  E-value=3.7e-13  Score=92.16  Aligned_cols=114  Identities=31%  Similarity=0.374  Sum_probs=85.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCc-ccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998877754443 3333                           333345567788999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027824           93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVE  164 (218)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (218)
                      |+..+..+++.+  |...+....+.+.|.++++||.|+.+..++..++        +..++++|++++.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~--------~~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEE--------GLEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHH--------HHHHHHHhCCCcchhh
Confidence            999999998766  8777766666778999999999985433333322        2346677889998874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.49  E-value=9.4e-13  Score=102.22  Aligned_cols=127  Identities=14%  Similarity=0.091  Sum_probs=73.9

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCC-CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh-------hh
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE-SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI-------TS   80 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~   80 (218)
                      +..+.++|+++|.+|+||||++|++++...... ...+.+..........+  ...+.+|||||..+....       ..
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHH
Confidence            346689999999999999999999998765322 21222222222222233  367899999996543221       11


Q ss_pred             hhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccC
Q 027824           81 AYY--RGAVGALLVYDVTRHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVS  137 (218)
Q Consensus        81 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~  137 (218)
                      .++  ...|++|||..++.....+.-...+..+....+  .-.+.||++|+.|...+...+
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~  172 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE  172 (313)
T ss_pred             HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence            122  268999999765532111111222333333222  234689999999976443343

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.49  E-value=1.9e-13  Score=119.15  Aligned_cols=119  Identities=16%  Similarity=0.147  Sum_probs=82.4

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCc---------------CCCC---CcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE---------------FNLE---SKSTIGVEFATRSLRIDNKVVKAQIWDTAG   71 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~---------------~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G   71 (218)
                      .+...+|+++|+.++|||||+++|+...               +...   +..|.........+.+++..+.+.+|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            3456899999999999999999997531               1110   111222222222334566778999999999


Q ss_pred             chhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      +..|.......++.+|++|+|+|+.++...+....|.. +.   ..+.|.++++||+|...
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---KENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---HcCCCEEEEEEChhccc
Confidence            99988888888999999999999987533333222322 22   24578899999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.47  E-value=2.6e-13  Score=103.67  Aligned_cols=96  Identities=16%  Similarity=0.181  Sum_probs=78.7

Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe
Q 027824           73 ERYRAITSAYYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY  151 (218)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  151 (218)
                      +++..+.+.+++++|++++|||+.++. +++.+..|+..+..   .++|+++|+||+||.++..+..+.+..+ ...+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            566777888999999999999999887 89999999887654   5789999999999976555443444444 357889


Q ss_pred             EEEEccCCCCCHHHHHHHHHH
Q 027824          152 FMETSALDATNVENAFTEVLT  172 (218)
Q Consensus       152 ~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      ++++||+++.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999988753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.47  E-value=1.2e-12  Score=101.50  Aligned_cols=153  Identities=25%  Similarity=0.229  Sum_probs=106.5

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCC-------------------------------CCcccceeEEEEEEEEEC
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-------------------------------ESKSTIGVEFATRSLRID   58 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~   58 (218)
                      ....+|++.+|+..-||||||-||+...-..                               +.....|+++......+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            4567999999999999999999997753100                               011224555555555555


Q ss_pred             CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH
Q 027824           59 NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST  138 (218)
Q Consensus        59 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~  138 (218)
                      ...-+|.|-||||++.|......-..-+|+.|+++|+-.+- +++.+. ...+.... .-..+++++||+||.+-.+..+
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrR-Hs~I~sLL-GIrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRR-HSFIASLL-GIRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHH-HHHHHHHh-CCcEEEEEEeeecccccCHHHH
Confidence            56668999999999999988877778899999999995432 111111 22222222 2346888999999988766555


Q ss_pred             HHH----HHHHHHcCC---eEEEEccCCCCCHHH
Q 027824          139 EDG----KAFAEQESL---YFMETSALDATNVEN  165 (218)
Q Consensus       139 ~~~----~~~~~~~~~---~~~~~Sa~~~~~v~~  165 (218)
                      +++    ..|+.++++   .++.+||..|+||-.
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            554    455666665   589999999998854

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=7.8e-13  Score=95.62  Aligned_cols=114  Identities=20%  Similarity=0.282  Sum_probs=78.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhc---CCcEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYR---GAVGA   89 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~   89 (218)
                      .-.|+++|..+||||+|+-+|..+.+....   ...........+....  +.+.|.||+++.+.-...+++   ++-++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            357999999999999999999887442211   1122222333333332  799999999988877777776   78999


Q ss_pred             EEEEECCC-hhhHHHHHH-HHHHHHhh--cCCCCcEEEEEeCCCCC
Q 027824           90 LLVYDVTR-HATFQNVGR-WLRELREH--TDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        90 i~v~d~~~-~~s~~~~~~-~~~~i~~~--~~~~~p~ivv~nK~Dl~  131 (218)
                      +||+|... ......+.+ ++..+...  ....+|++++.||.|+.
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            99999863 223344434 34444333  24788999999999995

>TIGR00101 ureG urease accessory protein UreG

Probab=99.47  E-value=1.6e-12  Score=96.28  Aligned_cols=102  Identities=14%  Similarity=0.082  Sum_probs=64.6

Q ss_pred             EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 027824           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDG  141 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  141 (218)
                      ....++++.|........+.   -++.+|.|+|+.+.++...  .+...+.      ..-++++||+|+........+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence            34567777774222222221   1577999999987665322  1112221      12389999999975323333444


Q ss_pred             HHHHHH--cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          142 KAFAEQ--ESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       142 ~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      .+.++.  .+++++++|+++|+|++++|++|.+.+
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            455554  467899999999999999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.46  E-value=1.6e-12  Score=99.28  Aligned_cols=122  Identities=18%  Similarity=0.208  Sum_probs=73.3

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC-cccceeEEEEEEEEECCeEEEEEEEeCCCchhhh--h-h-----
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR--A-I-----   78 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-~-----   78 (218)
                      ++.+..++|+|+|.+|+|||||+|.|++....... ....+..........++  ..+.+|||||..+..  . .     
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~  103 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL  103 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence            35667899999999999999999999997653322 12222222222233333  568999999964331  1 1     


Q ss_pred             --hhhhh--cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCC
Q 027824           79 --TSAYY--RGAVGALLVYDVTRH-ATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRH  132 (218)
Q Consensus        79 --~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~  132 (218)
                        ...++  ...++++||..++.. ..... ...++.+....+  --.++++|.||+|...
T Consensus       104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence              11233  267888888766642 22221 123333333222  1246999999999854

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.46  E-value=3.1e-12  Score=113.68  Aligned_cols=145  Identities=19%  Similarity=0.172  Sum_probs=92.6

Q ss_pred             CChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCe-----------E-----EEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824           24 VGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-----------V-----VKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus        24 ~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----------~-----~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      ++||||+.++.+......-...++..+.-..+..+..           .     -.+.+|||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            3599999999887664333233332222222222210           0     12799999999999888887888999


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH------------HH-HHHH-------
Q 027824           88 GALLVYDVTRH---ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST------------ED-GKAF-------  144 (218)
Q Consensus        88 ~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~------------~~-~~~~-------  144 (218)
                      ++++|+|++++   .+++.+    ..+..   .++|+++++||+|+........            +. ..++       
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999873   444432    22222   3689999999999854322100            00 0111       


Q ss_pred             ---HHH---------------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824          145 ---AEQ---------------ESLYFMETSALDATNVENAFTEVLTQIY  175 (218)
Q Consensus       145 ---~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~i~  175 (218)
                         ..+               ..++++.+||++|+|+++++.+|.....
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence               011               1457999999999999999987765443

>PTZ00258 GTP-binding protein; Provisional

Probab=99.44  E-value=5e-12  Score=101.72  Aligned_cols=85  Identities=19%  Similarity=0.215  Sum_probs=60.9

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeE---------------EEEEEEeCCCchhh
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV---------------VKAQIWDTAGQERY   75 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~   75 (218)
                      ...++|.++|.|++|||||+|.|++........|..+.+.....+.+.+..               .++.++|+||...-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            456899999999999999999998877655555666656555555544322               35899999994311


Q ss_pred             ----hhh---hhhhhcCCcEEEEEEEC
Q 027824           76 ----RAI---TSAYYRGAVGALLVYDV   95 (218)
Q Consensus        76 ----~~~---~~~~~~~~d~~i~v~d~   95 (218)
                          ..+   ....++.+|++++|+|.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~  125 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRA  125 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence                112   23346789999999997

>PRK13768 GTPase; Provisional

Probab=99.44  E-value=1.5e-12  Score=100.08  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=69.9

Q ss_pred             EEEEEeCCCchhh---hhhhhhhhc---C--CcEEEEEEECCChhhHHHH-H-HHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           63 KAQIWDTAGQERY---RAITSAYYR---G--AVGALLVYDVTRHATFQNV-G-RWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        63 ~~~i~D~~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~-~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      .+.+||+||+.+.   ...+..+++   .  ++++++++|+......... . .|+...... ..+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            5789999997654   333333322   2  8999999999754433222 2 223222222 25799999999999865


Q ss_pred             CcccCH--HHHH------------------------HHHHHcC--CeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          133 LVAVST--EDGK------------------------AFAEQES--LYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       133 ~~~~~~--~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      ..+...  ....                        +.....+  .+++.+|+++++|+++++++|.+.+
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            432210  0000                        1122223  5789999999999999999997765

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.44  E-value=2.2e-12  Score=96.90  Aligned_cols=166  Identities=18%  Similarity=0.230  Sum_probs=98.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcc-cceeEEEEE------EE------EE-------------------
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKS-TIGVEFATR------SL------RI-------------------   57 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~------~~------~~-------------------   57 (218)
                      .+.+.-|+++|..|+|||||++||..........+ .+..+....      .+      .+                   
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL   95 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL   95 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence            45568899999999999999999876433222111 000000000      00      00                   


Q ss_pred             ----------------CCeEEEEEEEeCCCch------hhhhhhhhhhcCCc--EEEEEEECCC---hhhHHHHHHHHHH
Q 027824           58 ----------------DNKVVKAQIWDTAGQE------RYRAITSAYYRGAV--GALLVYDVTR---HATFQNVGRWLRE  110 (218)
Q Consensus        58 ----------------~~~~~~~~i~D~~G~~------~~~~~~~~~~~~~d--~~i~v~d~~~---~~s~~~~~~~~~~  110 (218)
                                      ....+...++||||+-      ..+++....+....  +++|++|...   +.+|  +..++-.
T Consensus        96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlYA  173 (366)
T KOG1532|consen   96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLYA  173 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHHH
Confidence                            1233468899999963      22334444444443  4555666432   3333  3444555


Q ss_pred             HHhhcCCCCcEEEEEeCCCCCCCcc-----cCHHHHHHHHHH---------------------cCCeEEEEccCCCCCHH
Q 027824          111 LREHTDPNIIVMLIGNKTDLRHLVA-----VSTEDGKAFAEQ---------------------ESLYFMETSALDATNVE  164 (218)
Q Consensus       111 i~~~~~~~~p~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~---------------------~~~~~~~~Sa~~~~~v~  164 (218)
                      .........|+|++.||.|+.+...     .+++..++...+                     .++..+-||+.+|.|++
T Consensus       174 cSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d  253 (366)
T KOG1532|consen  174 CSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD  253 (366)
T ss_pred             HHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence            5555557899999999999965311     112222211111                     25678899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027824          165 NAFTEVLTQIYKI  177 (218)
Q Consensus       165 ~~~~~i~~~i~~~  177 (218)
                      ++|..+-..+.+.
T Consensus       254 df~~av~~~vdEy  266 (366)
T KOG1532|consen  254 DFFTAVDESVDEY  266 (366)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877665

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.43  E-value=2.6e-13  Score=99.28  Aligned_cols=147  Identities=19%  Similarity=0.270  Sum_probs=97.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCC-CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----hhhhhcCC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLE-SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI-----TSAYYRGA   86 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~~~   86 (218)
                      .-||+++|.+|+||||+-..++.+..... ..++.++++.-....+-|. ..+.+||++|++.+...     ....++++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            46899999999999999877776553222 2244445554444444433 56899999999865432     34578899


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCC--cccCHHH----HHHHHHHcCCeEEEEccC
Q 027824           87 VGALLVYDVTRHATFQNVGRWLRELREHT--DPNIIVMLIGNKTDLRHL--VAVSTED----GKAFAEQESLYFMETSAL  158 (218)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~--~~~~~~~----~~~~~~~~~~~~~~~Sa~  158 (218)
                      +++|+|||+...+-..++..+...++...  .+...+++..+|.|+...  ++....+    .+.+....++.++.+|..
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw  162 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW  162 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence            99999999998866555555544443332  267788999999999643  2222222    233333456778888877


Q ss_pred             CC
Q 027824          159 DA  160 (218)
Q Consensus       159 ~~  160 (218)
                      +.
T Consensus       163 De  164 (295)
T KOG3886|consen  163 DE  164 (295)
T ss_pred             hH
Confidence            63

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.43  E-value=2.8e-12  Score=96.13  Aligned_cols=157  Identities=18%  Similarity=0.171  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCc--ccceeEEEEEEEEECCeEEEEEEEeCCCchhh-------hh-hh---h
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESK--STIGVEFATRSLRIDNKVVKAQIWDTAGQERY-------RA-IT---S   80 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~-~~---~   80 (218)
                      ++|+|+|..|+||||++|.+++........  ...+..........++  ..+.|+||||..+.       .. +.   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999987654432  2222223333345566  45799999993211       11 11   1


Q ss_pred             hhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHcCCe
Q 027824           81 AYYRGAVGALLVYDVTRHATFQ--NVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS-------TEDGKAFAEQESLY  151 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~  151 (218)
                      ....+.+++|||+.+. +-+-.  .+..++..+.... .-..++||.|..|...+..+.       ....+++....+-.
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            2345789999999998 32222  1222233322111 123578888888865543321       12245566667777


Q ss_pred             EEEEccC------CCCCHHHHHHHHHHHH
Q 027824          152 FMETSAL------DATNVENAFTEVLTQI  174 (218)
Q Consensus       152 ~~~~Sa~------~~~~v~~~~~~i~~~i  174 (218)
                      |...+.+      ....+.++|..+-+.+
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv  185 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMV  185 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHH
Confidence            7777666      2234555555444433

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd00066 G-alpha G protein alpha subunit

Probab=99.42  E-value=1e-11  Score=98.52  Aligned_cols=119  Identities=20%  Similarity=0.224  Sum_probs=84.2

Q ss_pred             eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 027824           60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------ATFQNVGRWLRELREHTD-PNIIVMLIGNKT  128 (218)
Q Consensus        60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~  128 (218)
                      ..+.+.+||++|+...+..|..++.+++++|||+|+++-          ..+......+..+..... .+.|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            356789999999999999999999999999999999873          223333333333332222 678999999999


Q ss_pred             CCCCC----------------cccCHHHHHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027824          129 DLRHL----------------VAVSTEDGKAFAEQ----------ESLYFMETSALDATNVENAFTEVLTQIYKIV  178 (218)
Q Consensus       129 Dl~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~  178 (218)
                      |+-.+                ..-+.+.+..+...          ..+....++|.+..++..+|+.+.+.++...
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            97311                12244455544333          1344677899999999999999988877654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.4e-12  Score=99.83  Aligned_cols=163  Identities=19%  Similarity=0.148  Sum_probs=109.4

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCc---CCCCCcccceeEEEEEEE--------------------EE----CCeEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNE---FNLESKSTIGVEFATRSL--------------------RI----DNKVVK   63 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~--------------------~~----~~~~~~   63 (218)
                      +..++|.++|+...|||||...|.+--   ++++.....++.......                    ..    ..-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            677999999999999999999987632   111111111111100000                    00    011236


Q ss_pred             EEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--ccCHHHH
Q 027824           64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV--AVSTEDG  141 (218)
Q Consensus        64 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~  141 (218)
                      +.|.|+||++-..+....-..-.|+.++|++++.+..-.+.++.+..+....  -..+|++-||+|+....  ..+++++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            8999999999887766555566799999999997644333444344444433  24489999999996532  2355667


Q ss_pred             HHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824          142 KAFAEQ---ESLYFMETSALDATNVENAFTEVLTQIY  175 (218)
Q Consensus       142 ~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~i~  175 (218)
                      ++|.+.   .+++++.+||..+.|++.+++.|.+.+-
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            777665   5789999999999999999998887663

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.40  E-value=3.6e-12  Score=102.07  Aligned_cols=159  Identities=14%  Similarity=0.180  Sum_probs=112.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCC--------------CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFN--------------LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA   77 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   77 (218)
                      ..-+|+++.+...|||||++.|+.+.-.              ......-|+++-.+...+....+.+.|.||||+.+|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            4568999999999999999999876421              11113446677666666777778999999999999999


Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHH-------cC
Q 027824           78 ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV-STEDGKAFAEQ-------ES  149 (218)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~-------~~  149 (218)
                      -....+.=+|++++++|+.++.-.+ .+..++.   ....+.+.|||+||+|.+..+.. ..++...+...       ++
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkK---Al~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd  159 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQ-TRFVLKK---ALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD  159 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCc-hhhhHHH---HHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence            8888899999999999998753222 2222222   22356778999999999775331 11223333332       56


Q ss_pred             CeEEEEccCCC----------CCHHHHHHHHHHHH
Q 027824          150 LYFMETSALDA----------TNVENAFTEVLTQI  174 (218)
Q Consensus       150 ~~~~~~Sa~~~----------~~v~~~~~~i~~~i  174 (218)
                      ++++..|+..|          .++..+|+.|++.+
T Consensus       160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             CcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            78888888764          45677787777755

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.39  E-value=3.3e-11  Score=96.02  Aligned_cols=83  Identities=19%  Similarity=0.176  Sum_probs=58.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeE---------------EEEEEEeCCCchh----
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV---------------VKAQIWDTAGQER----   74 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~----   74 (218)
                      ++|.++|.|++|||||+|++++........|..+.+.....+.+.+..               .++.+.|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999987544444555555555455444321               2589999999432    


Q ss_pred             hhhhh---hhhhcCCcEEEEEEECC
Q 027824           75 YRAIT---SAYYRGAVGALLVYDVT   96 (218)
Q Consensus        75 ~~~~~---~~~~~~~d~~i~v~d~~   96 (218)
                      ...+.   ...++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            11222   23467999999999983

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.37  E-value=8.3e-12  Score=109.20  Aligned_cols=118  Identities=18%  Similarity=0.159  Sum_probs=79.8

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC----------------cccceeEEEEE--EEEECCeEEEEEEEeCCC
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES----------------KSTIGVEFATR--SLRIDNKVVKAQIWDTAG   71 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~--~~~~~~~~~~~~i~D~~G   71 (218)
                      .++..+|+++|+.++|||||+.+|+........                ....+++....  .+..++..+.+.++||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            456678999999999999999999753211100                00111111111  122344567899999999


Q ss_pred             chhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      +.+|.......++.+|++|+|+|+..+...+....|.... .   .+.|.|+++||+|..
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~-~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL-R---ERVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH-H---cCCCeEEEEECchhh
Confidence            9998887888889999999999998764433333343322 2   346789999999975

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.37  E-value=4.9e-12  Score=111.96  Aligned_cols=119  Identities=22%  Similarity=0.201  Sum_probs=82.8

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCC----------------CCcccceeEEEEEEEEE--------------C
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL----------------ESKSTIGVEFATRSLRI--------------D   58 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~--------------~   58 (218)
                      +.+...+|+++|+.++|||||+++|+......                +.....++......+..              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            45567899999999999999999997543210                00011112211112222              1


Q ss_pred             CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           59 NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        59 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      ...+.+.++||||+.+|.......++.+|+.|+|+|+..+-.......|....    ..++|+|+++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~----~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH----HCCCCEEEEEECCccc
Confidence            23567899999999999888888889999999999999875544433343322    2578999999999986

>PTZ00416 elongation factor 2; Provisional

Probab=99.35  E-value=7.7e-12  Score=110.58  Aligned_cols=118  Identities=21%  Similarity=0.209  Sum_probs=80.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCC----------------CcccceeEEEEEEEEEC--------CeEEEEE
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE----------------SKSTIGVEFATRSLRID--------NKVVKAQ   65 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------~~~~~~~   65 (218)
                      .+...+|+++|+.++|||||+++|+.......                .....++......+...        +....+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            35567999999999999999999986322110                00111111111122222        2256789


Q ss_pred             EEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        66 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      ++||||+.+|.......++.+|++|+|+|+.++-..+...-| ..+..   .+.|+|+++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence            999999999888788889999999999999886444433333 33322   468999999999986

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.35  E-value=3.4e-11  Score=98.90  Aligned_cols=166  Identities=18%  Similarity=0.230  Sum_probs=122.9

Q ss_pred             CCCCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhc
Q 027824            5 KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYR   84 (218)
Q Consensus         5 ~~~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   84 (218)
                      ++.......++..++|+.++|||.|++.++++.+...+..+....+....+...+..-.+.+-|.+-. ....+...- .
T Consensus       417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~  494 (625)
T KOG1707|consen  417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A  494 (625)
T ss_pred             ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence            44566677899999999999999999999999888766666666666666666666667788888754 333222222 6


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCH
Q 027824           85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNV  163 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  163 (218)
                      .+|++.++||.+++.+|..+...+..-...  ...|.++|++|+|+.+..+....+-.+++++++++ .+..|.+.... 
T Consensus       495 ~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-  571 (625)
T KOG1707|consen  495 ACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-  571 (625)
T ss_pred             eeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence            799999999999999999876655554433  68999999999999775433333347888988885 45667765333 


Q ss_pred             HHHHHHHHHHHH
Q 027824          164 ENAFTEVLTQIY  175 (218)
Q Consensus       164 ~~~~~~i~~~i~  175 (218)
                      .++|..|...+.
T Consensus       572 ~~lf~kL~~~A~  583 (625)
T KOG1707|consen  572 NELFIKLATMAQ  583 (625)
T ss_pred             chHHHHHHHhhh
Confidence            788888877553

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.33  E-value=2.4e-12  Score=97.74  Aligned_cols=111  Identities=16%  Similarity=0.122  Sum_probs=60.1

Q ss_pred             EEEEEeCCCchhhhhhhhhhh--------cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027824           63 KAQIWDTAGQERYRAITSAYY--------RGAVGALLVYDVTRHAT-FQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL  133 (218)
Q Consensus        63 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  133 (218)
                      .+.|+|||||-++...+....        ...-++++++|.....+ ...+..++..+......+.|.|.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            578999999987766554433        34557888888764322 222344444444444467999999999999762


Q ss_pred             cc-------cC------------HHHHHHHHHH---cC-C-eEEEEccCCCCCHHHHHHHHHHH
Q 027824          134 VA-------VS------------TEDGKAFAEQ---ES-L-YFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus       134 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      ..       .+            ....++++.-   .+ . .++.+|+.+++++++++..+-+.
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            10       00            0001111111   22 3 69999999999999999877554

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd01882 BMS1 Bms1

Probab=99.33  E-value=4.5e-11  Score=90.40  Aligned_cols=139  Identities=17%  Similarity=0.140  Sum_probs=82.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      .....|+++|.+|+|||||++.+.+...........|. +   .+ ......++.++|+||.-  ..+ ....+.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEE
Confidence            44578999999999999999999865221111111111 1   11 11234567899999863  222 23467899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCcccC---HHHHHH-HHHH--cCCeEEEEccCCCC
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIV-MLIGNKTDLRHLVAVS---TEDGKA-FAEQ--ESLYFMETSALDAT  161 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~  161 (218)
                      +++|++.+..... ..++..+..   .+.|. ++|+||.|+.++....   ..++++ +..+  .+.+++.+||+++-
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            9999986543322 122333322   35674 5599999986432211   112222 2222  35689999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.33  E-value=5.1e-12  Score=90.70  Aligned_cols=149  Identities=16%  Similarity=0.104  Sum_probs=89.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEE--EECC-eE----------------------------
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSL--RIDN-KV----------------------------   61 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~--~~~~-~~----------------------------   61 (218)
                      .++|.+.|++|||||+|+.+++...........++.+....+-  .+.. ..                            
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            5899999999999999999987755433222222222222100  0000 11                            


Q ss_pred             ----EEEEEEeCCCchhhhhhhhhhhcCCc-EEEEEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCcc
Q 027824           62 ----VKAQIWDTAGQERYRAITSAYYRGAV-GALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKTDLRHLVA  135 (218)
Q Consensus        62 ----~~~~i~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~  135 (218)
                          +.+.|++..| .-.-..   .+.-.| .-|+|+|++.++....         . ...--..=++|+||.|+.....
T Consensus        93 ~~~~~Dll~iEs~G-NL~~~~---sp~L~d~~~v~VidvteGe~~P~---------K~gP~i~~aDllVInK~DLa~~v~  159 (202)
T COG0378          93 DFPDLDLLFIESVG-NLVCPF---SPDLGDHLRVVVIDVTEGEDIPR---------KGGPGIFKADLLVINKTDLAPYVG  159 (202)
T ss_pred             cCCcCCEEEEecCc-ceeccc---CcchhhceEEEEEECCCCCCCcc---------cCCCceeEeeEEEEehHHhHHHhC
Confidence                2233333333 000000   001122 6777888876642211         1 0000013489999999998888


Q ss_pred             cCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          136 VSTEDGKAFAEQE--SLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       136 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      .+.+.+.+-+++.  +.+++++|+++|+|+++++.++....
T Consensus       160 ~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         160 ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            8888888888874  57899999999999999999887643

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.32  E-value=1.2e-11  Score=92.54  Aligned_cols=56  Identities=20%  Similarity=0.113  Sum_probs=42.0

Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHH
Q 027824          118 NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE--SLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus       118 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      ..|.++++||.|+........++..+..++.  .++++++||+++.|++++|+++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3567999999999754333334455555443  3789999999999999999999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.4e-10  Score=90.01  Aligned_cols=164  Identities=16%  Similarity=0.161  Sum_probs=96.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCc----CCCC---CcccceeEEEEEEEEE-------CCeEEEEEEEeCCCchhhhhh
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNE----FNLE---SKSTIGVEFATRSLRI-------DNKVVKAQIWDTAGQERYRAI   78 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~----~~~~---~~~t~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~~~   78 (218)
                      .+++.++|+..+|||+|.+++..-.    |+.+   .....+.+.....+.+       .++.+++.+.|+||+......
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt   86 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT   86 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence            4999999999999999999986432    2222   2222333332222222       345578999999999666554


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-cccC-HHHH-HHHHH---H----c
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL-VAVS-TEDG-KAFAE---Q----E  148 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-~~~~-~~~~-~~~~~---~----~  148 (218)
                      ......-.|..++|+|+..+...+..+-+  .+....  -...+||+||+|.-.+ ...+ .++. ++..+   .    .
T Consensus        87 iiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g  162 (522)
T KOG0461|consen   87 IIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG  162 (522)
T ss_pred             HHhhhheeeeeeEEEehhcccccccchhh--hhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC
Confidence            44444556889999999876443332221  111111  1236888888886332 1111 1111 11111   1    2


Q ss_pred             CCeEEEEccCCCCCHHHHHHHHHHHHHHHHhh
Q 027824          149 SLYFMETSALDATNVENAFTEVLTQIYKIVSK  180 (218)
Q Consensus       149 ~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~~  180 (218)
                      +.|++++||++|.--++.+..+.+.+..+..+
T Consensus       163 ~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  163 NSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             CCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            47899999999966666666666655554443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.30  E-value=1.9e-11  Score=99.65  Aligned_cols=171  Identities=20%  Similarity=0.340  Sum_probs=131.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      -+.+|+.++|..++|||+|+.+++.+.+.....+..+  .+.+++.+++....+.+.|.+|..     ...|...+|++|
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavI  100 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVV  100 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceE
Confidence            3468999999999999999999999888766544433  456777778887788888988842     234667799999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHH-cCCeEEEEccCCCCCHHHH
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLR--HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENA  166 (218)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~  166 (218)
                      |||.+.+..+|+.+..+...+..+.. ..+|+++++++.-..  ..+.+.+..+++++.. ..+.||++.+..|.+++.+
T Consensus       101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv  180 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV  180 (749)
T ss_pred             EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence            99999999999998877766654443 678899999886553  2345556666666555 5678999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcCCC
Q 027824          167 FTEVLTQIYKIVSKRAVEAGSN  188 (218)
Q Consensus       167 ~~~i~~~i~~~~~~~~~~~~~~  188 (218)
                      |+.+...+...+..+-......
T Consensus       181 f~~~~~k~i~~~~~qq~~~~~~  202 (749)
T KOG0705|consen  181 FQEVAQKIVQLRKYQQLPASSS  202 (749)
T ss_pred             HHHHHHHHHHHHhhhhcccccc
Confidence            9999998888866665544433

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=5.7e-11  Score=97.58  Aligned_cols=157  Identities=21%  Similarity=0.219  Sum_probs=108.4

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcC--------------------C---------CCCcccceeEEEEEEEEEC
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEF--------------------N---------LESKSTIGVEFATRSLRID   58 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~--------------------~---------~~~~~t~~~~~~~~~~~~~   58 (218)
                      .+....+..+++|+..+|||||.-+++...-                    .         .......|++.......++
T Consensus       172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe  251 (603)
T KOG0458|consen  172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE  251 (603)
T ss_pred             cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence            3444678999999999999999998865321                    0         1111334667777777777


Q ss_pred             CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh---hHH---HHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           59 NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA---TFQ---NVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        59 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      .....+.|+|+||+..|......-...+|+.++|+|++-.+   .|+   .+++....+....  -..+||++||+|+.+
T Consensus       252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVS  329 (603)
T ss_pred             cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccC
Confidence            77788999999999999888888888999999999998542   122   2233333333322  345899999999976


Q ss_pred             CcccCHHHHH----HHH-HHc-----CCeEEEEccCCCCCHHHH
Q 027824          133 LVAVSTEDGK----AFA-EQE-----SLYFMETSALDATNVENA  166 (218)
Q Consensus       133 ~~~~~~~~~~----~~~-~~~-----~~~~~~~Sa~~~~~v~~~  166 (218)
                      =.+-.++++.    .|. +..     .+.|+.||+..|+|+-..
T Consensus       330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            4444444433    333 223     357999999999887543

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.29  E-value=6.3e-11  Score=93.74  Aligned_cols=106  Identities=12%  Similarity=0.078  Sum_probs=67.5

Q ss_pred             EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CH
Q 027824           61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--ST  138 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~  138 (218)
                      .+.+.|+||+|.......   ....+|.++++.+...++.+..+..   .+..     ..-++|+||.|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHH
Confidence            357899999996532222   4567999999987665555544321   1111     123899999998653321  11


Q ss_pred             HHHHHHHHH-------cCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027824          139 EDGKAFAEQ-------ESLYFMETSALDATNVENAFTEVLTQIYKI  177 (218)
Q Consensus       139 ~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~  177 (218)
                      .+.+.....       +..+++.+||.++.|++++++.|.+.+...
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            122222221       235799999999999999999998865433

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=3.2e-11  Score=101.33  Aligned_cols=164  Identities=21%  Similarity=0.228  Sum_probs=107.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccc----eeEEEEEE--------EEECCe----EEEEEEEeCCCchhhh
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTI----GVEFATRS--------LRIDNK----VVKAQIWDTAGQERYR   76 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~----~~~~~~~~--------~~~~~~----~~~~~i~D~~G~~~~~   76 (218)
                      ..-++++|+..+|||-|+..+.+.........++    |-++++..        +.-++.    .--+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            3558999999999999999997754433222222    22222211        000111    1137899999999999


Q ss_pred             hhhhhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------ccc-----------
Q 027824           77 AITSAYYRGAVGALLVYDVTRH---ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL------VAV-----------  136 (218)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------~~~-----------  136 (218)
                      .++......+|..|+|+|+..+   .+++.    +..+..   .+.|+||++||+|..=.      ..+           
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v  627 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV  627 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchhHH----HHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence            9999999999999999999864   33333    333433   67899999999997211      000           


Q ss_pred             ------CH-HHHHHHHHH-cC-------------CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhh
Q 027824          137 ------ST-EDGKAFAEQ-ES-------------LYFMETSALDATNVENAFTEVLTQIYKIVSKRAV  183 (218)
Q Consensus       137 ------~~-~~~~~~~~~-~~-------------~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~~~~~  183 (218)
                            .. .-..+|+.+ ++             +.++.+||..|+||-+++.+|++.....+.++-.
T Consensus       628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~  695 (1064)
T KOG1144|consen  628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLA  695 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence                  00 001222222 11             2367799999999999999999988887766543

>cd01900 YchF YchF subfamily

Probab=99.28  E-value=1e-10  Score=90.29  Aligned_cols=80  Identities=18%  Similarity=0.171  Sum_probs=56.9

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeE---------------EEEEEEeCCCchh----hh
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV---------------VKAQIWDTAGQER----YR   76 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~----~~   76 (218)
                      |.++|.|++|||||+|++++........+..+.+.....+.+.+..               ..+.++|+||...    ..
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999987755555666556655555554432               2589999999431    11


Q ss_pred             hhh---hhhhcCCcEEEEEEEC
Q 027824           77 AIT---SAYYRGAVGALLVYDV   95 (218)
Q Consensus        77 ~~~---~~~~~~~d~~i~v~d~   95 (218)
                      .+.   ...++.+|++++|+|+
T Consensus        81 glg~~fL~~i~~~D~li~VV~~  102 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRC  102 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeC
Confidence            222   2345789999999987

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.25  E-value=1.3e-10  Score=90.40  Aligned_cols=139  Identities=18%  Similarity=0.288  Sum_probs=75.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCC----------cccceeEEEEEEEEECCeEEEEEEEeCCCchh-------h
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLES----------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQER-------Y   75 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~   75 (218)
                      .++|+|+|.+|+|||||+|.|++.......          ..+..+......+.-++..+.+.++||||-..       +
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999987543321          12233333344455577788999999999210       1


Q ss_pred             hhh-------hhhhh-------------cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824           76 RAI-------TSAYY-------------RGAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV  134 (218)
Q Consensus        76 ~~~-------~~~~~-------------~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  134 (218)
                      ..+       ...++             ..+|++||.++.+.. -.-.++ ..++.+.    ..+++|.|+.|.|.-...
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCHH
Confidence            000       00011             256899999998752 111221 2344443    456799999999974322


Q ss_pred             cc--CHHHHHHHHHHcCCeEEEEc
Q 027824          135 AV--STEDGKAFAEQESLYFMETS  156 (218)
Q Consensus       135 ~~--~~~~~~~~~~~~~~~~~~~S  156 (218)
                      ++  ....+++....+++.+|.-.
T Consensus       159 el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  159 ELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHHcCceeeccc
Confidence            21  12223444555777766533

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.23  E-value=4.6e-10  Score=89.84  Aligned_cols=156  Identities=17%  Similarity=0.205  Sum_probs=93.0

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC----cCC------------CCCccc---ceeEEEE-----EEEE-ECCeEEEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKN----EFN------------LESKST---IGVEFAT-----RSLR-IDNKVVKAQ   65 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~----~~~------------~~~~~t---~~~~~~~-----~~~~-~~~~~~~~~   65 (218)
                      ...+.|.++|+.++|||||+++|.+.    ...            ++..+.   .+++...     ..+. .++...++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            45689999999999999999999987    322            111111   1122211     2222 245567899


Q ss_pred             EEeCCCchhhhhh-----------------------------hhhhhc-CCcEEEEEE-ECC----ChhhH-HHHHHHHH
Q 027824           66 IWDTAGQERYRAI-----------------------------TSAYYR-GAVGALLVY-DVT----RHATF-QNVGRWLR  109 (218)
Q Consensus        66 i~D~~G~~~~~~~-----------------------------~~~~~~-~~d~~i~v~-d~~----~~~s~-~~~~~~~~  109 (218)
                      ++||+|-+.-..+                             ....+. .++..|+|. |.+    .++.+ +.-..|+.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            9999993211110                             223344 788888888 664    12222 22244666


Q ss_pred             HHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC--CCCCHHHHHHHHH
Q 027824          110 ELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL--DATNVENAFTEVL  171 (218)
Q Consensus       110 ~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~v~~~~~~i~  171 (218)
                      ++..   .++|+++++|+.|...+  ...+...++..+++++++.+|+.  +.+++..+|..++
T Consensus       175 eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       175 ELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             HHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence            6655   57999999999994321  13333456666678887776664  4455555554443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.23  E-value=1.6e-10  Score=83.40  Aligned_cols=63  Identities=21%  Similarity=0.207  Sum_probs=44.7

Q ss_pred             EEEEEeCCCchh----hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027824           63 KAQIWDTAGQER----YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT  128 (218)
Q Consensus        63 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  128 (218)
                      .+.|+|+||...    ...++..+++.+|++|+|.+++...+-.....|.+.....   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            478999999642    3356777889999999999999865555555555555433   33489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.17  E-value=2.2e-09  Score=84.73  Aligned_cols=122  Identities=20%  Similarity=0.253  Sum_probs=88.2

Q ss_pred             eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcC----CCCcEEEEEeCC
Q 027824           60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA-------TFQNVGRWLRELREHTD----PNIIVMLIGNKT  128 (218)
Q Consensus        60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~  128 (218)
                      ....+.++|.+||...+.-|..++.+++++|||+++++-+       ..+.+.+-+..+....+    .+.++|+++||.
T Consensus       193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~  272 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK  272 (354)
T ss_pred             CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence            3467899999999999999999999999999999998532       33455555555555443    578999999999


Q ss_pred             CCCCC--------------cc-cCHHHHHHHHHH--------c--CCeEEEEccCCCCCHHHHHHHHHHHHHHHHhhh
Q 027824          129 DLRHL--------------VA-VSTEDGKAFAEQ--------E--SLYFMETSALDATNVENAFTEVLTQIYKIVSKR  181 (218)
Q Consensus       129 Dl~~~--------------~~-~~~~~~~~~~~~--------~--~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~~~  181 (218)
                      |+-++              .. -+.+++..+...        .  .+.+..+.|.+-.+|+.+|..+.+.+.....+.
T Consensus       273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~  350 (354)
T KOG0082|consen  273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKD  350 (354)
T ss_pred             HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99321              11 233444433322        1  244677889999999999999998887765443

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=2.7e-10  Score=97.95  Aligned_cols=118  Identities=17%  Similarity=0.186  Sum_probs=89.8

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC----------------cccceeEEEEEEEEECCe-EEEEEEEeCCCc
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES----------------KSTIGVEFATRSLRIDNK-VVKAQIWDTAGQ   72 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~   72 (218)
                      .+...+|.++|+..+|||||..+++...-..+.                ...-|+++....+.+... .+.+.++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            667789999999999999999998653211110                012345555555555555 488999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      -+|..-....++-+|+.++|+|+..+-..+.-.-|.+...    .++|.|+++||+|..
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~  141 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRL  141 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccc
Confidence            9999988899999999999999998766666555655443    578999999999974

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.17  E-value=1.2e-10  Score=92.98  Aligned_cols=163  Identities=11%  Similarity=0.133  Sum_probs=79.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-cc--ceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhh-----hhh
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-ST--IGVEFATRSLRIDNKVVKAQIWDTAGQERYRAIT-----SAY   82 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~   82 (218)
                      ...++|+|+|.+|+|||||||.|.+-....... ++  ..++.....+.... .-.+.+||.||.....-..     ..-
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            346899999999999999999996532221111 11  11111111121121 1247899999953221111     223


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCC-------CCcccCHH----HHHHHHHH---
Q 027824           83 YRGAVGALLVYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLR-------HLVAVSTE----DGKAFAEQ---  147 (218)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~----~~~~~~~~---  147 (218)
                      +..-|.+|++.+-.    |..... +...+..   -++|+++|-+|+|..       .++..+.+    ++++.+.+   
T Consensus       112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~  184 (376)
T PF05049_consen  112 FYRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ  184 (376)
T ss_dssp             GGG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence            45678777766532    222222 2333433   578899999999961       11222222    23333332   


Q ss_pred             -cCC---eEEEEccCCC--CCHHHHHHHHHHHHHHHHhhh
Q 027824          148 -ESL---YFMETSALDA--TNVENAFTEVLTQIYKIVSKR  181 (218)
Q Consensus       148 -~~~---~~~~~Sa~~~--~~v~~~~~~i~~~i~~~~~~~  181 (218)
                       .++   ++|.+|..+-  .++..+.+.|...+-.++...
T Consensus       185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~  224 (376)
T PF05049_consen  185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA  224 (376)
T ss_dssp             CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred             HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence             343   5899999854  567788888877776665543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=4.9e-10  Score=89.63  Aligned_cols=155  Identities=18%  Similarity=0.109  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCC---CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFN---LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      -|...|+...|||||+..+.+..-.   +......+++.........  +..+.++|.||++++-......+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~--d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE--DGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC--CCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            4788999999999999999876543   2333444444444444333  3478999999999998888888889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHH
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ---ESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      |++.+++-..+..+. +..+...  .....++|+||+|..++..+ ++..++....   .++++|.+|+++|.||+++-+
T Consensus        80 vV~~deGl~~qtgEh-L~iLdll--gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQTGEH-LLILDLL--GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchhhHHH-HHHHHhc--CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            999976533332221 2233222  22336999999999764322 1222333322   356789999999999999999


Q ss_pred             HHHHHHH
Q 027824          169 EVLTQIY  175 (218)
Q Consensus       169 ~i~~~i~  175 (218)
                      .|.....
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9988764

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=4.6e-10  Score=85.35  Aligned_cols=166  Identities=16%  Similarity=0.144  Sum_probs=107.1

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcC-------------C-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEF-------------N-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY   75 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~-------------~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   75 (218)
                      ..+-.+|..+|+...|||||...++.-..             . .......|+++....+.+...+-.+...|+||+.+|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            34568999999999999999987643111             0 011134466666666666666667899999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHcCC-
Q 027824           76 RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAV---STEDGKAFAEQESL-  150 (218)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~-  150 (218)
                      -.....-..+.|+.|+|++++++.-.+.- +.+....+   -+.| +++++||+|+.++.+.   .+.+.+++..++++ 
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTr-EHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~  164 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP  164 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcch-hhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence            88777777889999999999986432221 11111122   4665 5566899999875443   34557788888765 


Q ss_pred             ----eEEEEccCCC-CCHHHHHHHHHHHHHHHHhh
Q 027824          151 ----YFMETSALDA-TNVENAFTEVLTQIYKIVSK  180 (218)
Q Consensus       151 ----~~~~~Sa~~~-~~v~~~~~~i~~~i~~~~~~  180 (218)
                          |++.-||... ++-.. +..-+..+++....
T Consensus       165 gd~~Pii~gSal~ale~~~~-~~~~i~eLm~avd~  198 (394)
T COG0050         165 GDDTPIIRGSALKALEGDAK-WEAKIEELMDAVDS  198 (394)
T ss_pred             CCCcceeechhhhhhcCCcc-hHHHHHHHHHHHHh
Confidence                5777777532 44333 33333344444443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.15  E-value=5.6e-10  Score=88.05  Aligned_cols=104  Identities=13%  Similarity=0.038  Sum_probs=63.8

Q ss_pred             EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH
Q 027824           61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTED  140 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  140 (218)
                      .+.+.|+||+|.....   ...+..+|.++++.....+   +.+......+     .++|.++++||+|+..........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            4577899999853222   2245667888877554433   3333333323     346679999999986533211000


Q ss_pred             ------HHHHHH---HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824          141 ------GKAFAE---QESLYFMETSALDATNVENAFTEVLTQIY  175 (218)
Q Consensus       141 ------~~~~~~---~~~~~~~~~Sa~~~~~v~~~~~~i~~~i~  175 (218)
                            ...+..   .+..+++.+||+++.|++++++++.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                  011111   12346999999999999999999988643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.14  E-value=3e-09  Score=89.83  Aligned_cols=123  Identities=16%  Similarity=0.159  Sum_probs=74.4

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC-cccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-------hh-
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-------AI-   78 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~-   78 (218)
                      .+.+..++|+|+|.+|+||||++|.+++....... ....+..........++  ..+.|+||||..+..       .+ 
T Consensus       113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL  190 (763)
T TIGR00993       113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL  190 (763)
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence            34556689999999999999999999997643322 11222222222223333  568999999954321       11 


Q ss_pred             --hhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCC
Q 027824           79 --TSAYYR--GAVGALLVYDVTRHATFQNVGRWLRELREHTDP--NIIVMLIGNKTDLRH  132 (218)
Q Consensus        79 --~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~  132 (218)
                        ...++.  .+|++|+|..++.......-..++..+....+.  -..+|||.|..|...
T Consensus       191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence              112333  589999999886432211222445555544442  235799999999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.14  E-value=1.2e-10  Score=89.60  Aligned_cols=158  Identities=18%  Similarity=0.134  Sum_probs=107.3

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc--h-------hhhhh
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ--E-------RYRAI   78 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--~-------~~~~~   78 (218)
                      .......-|.++|..++|||||++.|+.....+...-..+.+.......+.... .+.+.||-|-  +       .|.+.
T Consensus       173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~AT  251 (410)
T KOG0410|consen  173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQAT  251 (410)
T ss_pred             cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHH
Confidence            344556789999999999999999999766555444444566655666665544 4789999992  1       22222


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcE----EEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIV----MLIGNKTDLRHLVAVSTEDGKAFAEQESLYFME  154 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~----ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  154 (218)
                      . .-...+|.++.|.|++.|+.-......+.-+....-+..|.    |=|=||+|........+        +++  -+.
T Consensus       252 L-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v~  320 (410)
T KOG0410|consen  252 L-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DVG  320 (410)
T ss_pred             H-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cCC--ccc
Confidence            2 23468999999999999987766666666666655444444    44557777644322211        122  577


Q ss_pred             EccCCCCCHHHHHHHHHHHHHHH
Q 027824          155 TSALDATNVENAFTEVLTQIYKI  177 (218)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~i~~~  177 (218)
                      +|+++|+|++++.+.+-..+...
T Consensus       321 isaltgdgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  321 ISALTGDGLEELLKAEETKVASE  343 (410)
T ss_pred             cccccCccHHHHHHHHHHHhhhh
Confidence            89999999999998887766554

>smart00053 DYNc Dynamin, GTPase

Probab=99.13  E-value=1.5e-09  Score=82.22  Aligned_cols=68  Identities=12%  Similarity=0.110  Sum_probs=42.9

Q ss_pred             EEEEEEeCCCchh-------------hhhhhhhhhc-CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027824           62 VKAQIWDTAGQER-------------YRAITSAYYR-GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK  127 (218)
Q Consensus        62 ~~~~i~D~~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK  127 (218)
                      ..+.++|+||...             ...+...|++ ..+.+++|+|+...-.-.....+.+.+   ...+.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l---d~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV---DPQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH---HHcCCcEEEEEEC
Confidence            3689999999531             1234456777 456888999886532222222222233   3367899999999


Q ss_pred             CCCCC
Q 027824          128 TDLRH  132 (218)
Q Consensus       128 ~Dl~~  132 (218)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=9.3e-10  Score=91.83  Aligned_cols=118  Identities=21%  Similarity=0.254  Sum_probs=86.9

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-----------------ccceeEEEEEEEE---ECCeEEEEEEEe
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-----------------STIGVEFATRSLR---IDNKVVKAQIWD   68 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~~i~D   68 (218)
                      ......+|.++|+-.+|||+|+.-|..+..+.-+.                 ...++.....++.   ..++.+-++++|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            34567899999999999999999998765433211                 1112222222222   256667899999


Q ss_pred             CCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824           69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL  130 (218)
Q Consensus        69 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  130 (218)
                      |||+-.|.+-....++.+|++++|+|+.++-.++.-    +.+........|+++|+||+|.
T Consensus       204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE----r~ikhaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE----RIIKHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH----HHHHHHHhccCcEEEEEehhHH
Confidence            999999999888999999999999999988776652    2333333467899999999996

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=3.3e-09  Score=83.69  Aligned_cols=84  Identities=18%  Similarity=0.223  Sum_probs=61.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC----------------eEEEEEEEeCCCc----
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN----------------KVVKAQIWDTAGQ----   72 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~----   72 (218)
                      .+++.++|-|++|||||+|.++.........|..+++.......+..                ....+.++|++|.    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            37899999999999999999999886655557777776555444311                1246899999983    


Q ss_pred             hhhhhhhh---hhhcCCcEEEEEEECC
Q 027824           73 ERYRAITS---AYYRGAVGALLVYDVT   96 (218)
Q Consensus        73 ~~~~~~~~---~~~~~~d~~i~v~d~~   96 (218)
                      +.-..+-.   .-++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence            23333333   4468999999999975

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.07  E-value=2e-10  Score=88.73  Aligned_cols=55  Identities=20%  Similarity=0.186  Sum_probs=40.2

Q ss_pred             CcEEEEEeCCCCCCCcccCHHHHHHHHHH--cCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824          119 IIVMLIGNKTDLRHLVAVSTEDGKAFAEQ--ESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus       119 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      .+-++|+||+|+........+...+..+.  .+++++.+|+++++|++++++||..+
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            44599999999965322233344444444  35789999999999999999999763

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.05  E-value=1.3e-08  Score=75.99  Aligned_cols=90  Identities=24%  Similarity=0.175  Sum_probs=67.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhhhh
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-------AITSAY   82 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~   82 (218)
                      +....+|+++|.|++|||||+..++.-..........+.+.-+..+.+++..  +++.|.||.-+..       ......
T Consensus        59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviav  136 (364)
T KOG1486|consen   59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAV  136 (364)
T ss_pred             ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEE
Confidence            3456899999999999999999998766655555666677777778888865  6899999953322       223345


Q ss_pred             hcCCcEEEEEEECCChhhH
Q 027824           83 YRGAVGALLVYDVTRHATF  101 (218)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~  101 (218)
                      .+.+|.++.|.|++..+.-
T Consensus       137 ArtaDlilMvLDatk~e~q  155 (364)
T KOG1486|consen  137 ARTADLILMVLDATKSEDQ  155 (364)
T ss_pred             eecccEEEEEecCCcchhH
Confidence            6789999999999875443

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=3.2e-09  Score=84.89  Aligned_cols=119  Identities=17%  Similarity=0.192  Sum_probs=84.5

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhc--CcC--------------CCCCc----ccceeEEEEEEEEECCeEEEEEEEeC
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTK--NEF--------------NLESK----STIGVEFATRSLRIDNKVVKAQIWDT   69 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~--~~~--------------~~~~~----~t~~~~~~~~~~~~~~~~~~~~i~D~   69 (218)
                      ....-..+++-+|.+|||||-.+|+-  +..              ..+.+    ..-|+.+....+.++.....+.|.||
T Consensus         9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT   88 (528)
T COG4108           9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT   88 (528)
T ss_pred             HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence            34456778999999999999998752  211              00000    22355566666666666778999999


Q ss_pred             CCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      ||+++|..-...-+.-+|..+.|+|+..+-.-+.    ++.+.-..-.++|++-++||.|...
T Consensus        89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT----~KLfeVcrlR~iPI~TFiNKlDR~~  147 (528)
T COG4108          89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT----LKLFEVCRLRDIPIFTFINKLDREG  147 (528)
T ss_pred             CCccccchhHHHHHHhhheeeEEEecccCccHHH----HHHHHHHhhcCCceEEEeecccccc
Confidence            9999887766667778999999999987643333    3333333347899999999999755

>cd01855 YqeH YqeH

Probab=99.04  E-value=2.2e-09  Score=79.18  Aligned_cols=93  Identities=20%  Similarity=0.111  Sum_probs=65.9

Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcC
Q 027824           75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFA-----EQES  149 (218)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~  149 (218)
                      +...+..+++++|++++|+|+.++..     .|...+... ..+.|+++|+||+|+.... ...+....+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence            57788889999999999999987531     122222222 2568999999999986532 2233344443     2233


Q ss_pred             C---eEEEEccCCCCCHHHHHHHHHHHH
Q 027824          150 L---YFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       150 ~---~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      .   .++.+||+++.|++++++.|.+.+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3   589999999999999999998765

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=1.8e-09  Score=84.57  Aligned_cols=126  Identities=14%  Similarity=0.190  Sum_probs=87.4

Q ss_pred             CCCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-ccceeEEEEEEEEECCeEE----------------------
Q 027824            6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVV----------------------   62 (218)
Q Consensus         6 ~~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~----------------------   62 (218)
                      .+.+++...-|+++|.-+.||||+|+.|+.+.++.... +..+++++...+.-+...+                      
T Consensus        51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~  130 (532)
T KOG1954|consen   51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN  130 (532)
T ss_pred             cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence            46788899999999999999999999999999876554 4444556555554321111                      


Q ss_pred             -----------------EEEEEeCCCch-----------hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhh
Q 027824           63 -----------------KAQIWDTAGQE-----------RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREH  114 (218)
Q Consensus        63 -----------------~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  114 (218)
                                       ++.|.||||.-           .|.....=+...+|.+|++||+...+--++....+..+   
T Consensus       131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---  207 (532)
T KOG1954|consen  131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---  207 (532)
T ss_pred             HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---
Confidence                             68999999932           23344455678999999999997644333333333333   


Q ss_pred             cCCCCcEEEEEeCCCCCCCc
Q 027824          115 TDPNIIVMLIGNKTDLRHLV  134 (218)
Q Consensus       115 ~~~~~p~ivv~nK~Dl~~~~  134 (218)
                      .++.-.+-||.||.|..+..
T Consensus       208 kG~EdkiRVVLNKADqVdtq  227 (532)
T KOG1954|consen  208 KGHEDKIRVVLNKADQVDTQ  227 (532)
T ss_pred             hCCcceeEEEeccccccCHH
Confidence            33445578999999986643

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=1.8e-09  Score=80.00  Aligned_cols=160  Identities=21%  Similarity=0.271  Sum_probs=97.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEE--EEEECCeEEEEEEEeCCCchhhhhh---hhhhhcCCc
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATR--SLRIDNKVVKAQIWDTAGQERYRAI---TSAYYRGAV   87 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d   87 (218)
                      ..+|+++|...+||||+-...+.+..+.+..   -.+-..+  .-.+.+.-+.+.+||.||+-.+-.-   ....++++.
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTl---flESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g  103 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETL---FLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG  103 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCcee---EeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence            3679999999999999988777665443322   1111111  1112234467899999998655432   345789999


Q ss_pred             EEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-CcccCHH-H-----HHHHHHH----cCCeEEE
Q 027824           88 GALLVYDVTRH--ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH-LVAVSTE-D-----GKAFAEQ----ESLYFME  154 (218)
Q Consensus        88 ~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~-~-----~~~~~~~----~~~~~~~  154 (218)
                      ++|||+|+.+.  +.+.++.......... ++++-+=|.+.|.|-.. +-.+... .     ..+++..    ..+.|+.
T Consensus       104 ALifvIDaQddy~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L  182 (347)
T KOG3887|consen  104 ALIFVIDAQDDYMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL  182 (347)
T ss_pred             eEEEEEechHHHHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence            99999998763  2333333333333222 27788889999999633 2222110 0     1112221    2345777


Q ss_pred             EccCCCCCHHHHHHHHHHHHHHH
Q 027824          155 TSALDATNVENAFTEVLTQIYKI  177 (218)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~i~~~  177 (218)
                      +|..+ +.+-+.|..+++.+..+
T Consensus       183 TSIyD-HSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  183 TSIYD-HSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             eeecc-hHHHHHHHHHHHHHhhh
Confidence            77765 78888888888877665

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.02  E-value=6.4e-09  Score=81.64  Aligned_cols=138  Identities=17%  Similarity=0.230  Sum_probs=81.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCC----------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhh------
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLE----------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY------   75 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------   75 (218)
                      -.++|+++|+.|.|||||+|.|++......          ..++..+......+.-++-.+.+.++||||--++      
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            469999999999999999999998743222          1233334444444555677788999999992111      


Q ss_pred             --------hhhhhhhh--------------cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           76 --------RAITSAYY--------------RGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        76 --------~~~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                              ......|+              ..+++++|.+..+.- .+..+ ...++.+..    .+-+|.|+.|+|.--
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT  176 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccCC
Confidence                    11111121              246888888887642 22222 122444443    344889999999732


Q ss_pred             Ccc--cCHHHHHHHHHHcCCeEEE
Q 027824          133 LVA--VSTEDGKAFAEQESLYFME  154 (218)
Q Consensus       133 ~~~--~~~~~~~~~~~~~~~~~~~  154 (218)
                      ..+  ...+.+++....+++++|.
T Consensus       177 ~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         177 DDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeC
Confidence            211  1122234445556666663

>cd01859 MJ1464 MJ1464

Probab=99.02  E-value=1.3e-09  Score=77.84  Aligned_cols=95  Identities=15%  Similarity=0.105  Sum_probs=64.6

Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q 027824           75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFME  154 (218)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  154 (218)
                      ++.+....++++|++|+|+|+.++..... ..+...+.   ..+.|+++|+||+|+......  .....+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence            35567778889999999999987643222 11222221   246899999999998542211  1111233445678999


Q ss_pred             EccCCCCCHHHHHHHHHHHHH
Q 027824          155 TSALDATNVENAFTEVLTQIY  175 (218)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~i~  175 (218)
                      +||+++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999877553

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>smart00275 G_alpha G protein alpha subunit

Probab=99.01  E-value=2.2e-08  Score=80.19  Aligned_cols=119  Identities=19%  Similarity=0.196  Sum_probs=83.6

Q ss_pred             EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027824           61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------ATFQNVGRWLRELREHT-DPNIIVMLIGNKTD  129 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D  129 (218)
                      .+.+.+||.+|+...+..|..++.+++++|||+|+++-          ..+......+..+.... -.+.|++|++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            36689999999999999999999999999999999963          22333333333333322 26789999999999


Q ss_pred             CCCC---------------cccCHHHHHHHHHH-----c------CCeEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027824          130 LRHL---------------VAVSTEDGKAFAEQ-----E------SLYFMETSALDATNVENAFTEVLTQIYKIVS  179 (218)
Q Consensus       130 l~~~---------------~~~~~~~~~~~~~~-----~------~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~  179 (218)
                      +...               ...+.+.+.++...     .      .+..+.++|.+-.++..+|+.+...+++...
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence            8311               00233444444332     1      2446778899999999999998888776543

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK12289 GTPase RsgA; Reviewed

Probab=99.00  E-value=2.7e-09  Score=85.38  Aligned_cols=90  Identities=16%  Similarity=0.120  Sum_probs=66.7

Q ss_pred             hhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEc
Q 027824           78 ITSAYYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETS  156 (218)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (218)
                      +....+.++|.+++|+|+.++. ....+..|+..+..   .++|+++|+||+|+..+.+.  +...+.....+..++.+|
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS  156 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS  156 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence            3344578999999999998775 44456677766633   57899999999999643221  122333346788999999


Q ss_pred             cCCCCCHHHHHHHHHH
Q 027824          157 ALDATNVENAFTEVLT  172 (218)
Q Consensus       157 a~~~~~v~~~~~~i~~  172 (218)
                      |.++.|++++++.+..
T Consensus       157 A~tg~GI~eL~~~L~~  172 (352)
T PRK12289        157 VETGIGLEALLEQLRN  172 (352)
T ss_pred             cCCCCCHHHHhhhhcc
Confidence            9999999999988864

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.98  E-value=3.5e-09  Score=82.98  Aligned_cols=88  Identities=13%  Similarity=0.019  Sum_probs=68.3

Q ss_pred             hhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027824           80 SAYYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL  158 (218)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (218)
                      ...+.++|.+++|+|+.++. ++..+..|+..+..   .++|+++|+||+|+..+.+  ......+....+.+++.+||+
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence            34578999999999999987 78888888887764   4689999999999965421  112233344578899999999


Q ss_pred             CCCCHHHHHHHHHH
Q 027824          159 DATNVENAFTEVLT  172 (218)
Q Consensus       159 ~~~~v~~~~~~i~~  172 (218)
                      ++.|+++++..+..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999887753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.97  E-value=9.2e-10  Score=82.96  Aligned_cols=151  Identities=18%  Similarity=0.129  Sum_probs=85.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcC-----------CCCCccc---------------ceeEEEEEEEEEC-------
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEF-----------NLESKST---------------IGVEFATRSLRID-------   58 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~-----------~~~~~~t---------------~~~~~~~~~~~~~-------   58 (218)
                      +.+.|.+.|+||+|||||++.|.....           +++...+               .....+.+.+.-.       
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            468999999999999999998754221           1111111               0112233333221       


Q ss_pred             -----------CeEEEEEEEeCCC--chhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 027824           59 -----------NKVVKAQIWDTAG--QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIG  125 (218)
Q Consensus        59 -----------~~~~~~~i~D~~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~  125 (218)
                                 ...+.+.|++|.|  |++..     ...-+|.+++|....-++.++.+..-+-++.        =|+|+
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vV  174 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVV  174 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEE
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEE
Confidence                       1224567777776  43333     3456899999999987776665444333332        29999


Q ss_pred             eCCCCCCCcccCHHHHHHHHHH-------cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824          126 NKTDLRHLVAVSTEDGKAFAEQ-------ESLYFMETSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       126 nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                      ||.|.+...... .+.+....-       +..+++.|||.++.|++++++.|.+....
T Consensus       175 NKaD~~gA~~~~-~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  175 NKADRPGADRTV-RDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             E--SHHHHHHHH-HHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             eCCChHHHHHHH-HHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            999964422211 122222221       23579999999999999999888774433

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=2.9e-08  Score=73.66  Aligned_cols=152  Identities=17%  Similarity=0.224  Sum_probs=86.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCC---------CcccceeEEEEEEEEECCeEEEEEEEeCCCch----------
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLE---------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----------   73 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------   73 (218)
                      .++|+|+|.+|.|||||+|+++.......         ...|..+......+.-++...++.++||||--          
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            58999999999999999999876543221         11222222223333445666789999999921          


Q ss_pred             --------hhhhh--------hhhhh--cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCC--C
Q 027824           74 --------RYRAI--------TSAYY--RGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR--H  132 (218)
Q Consensus        74 --------~~~~~--------~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~--~  132 (218)
                              .|...        +...+  ..+++.+|.+..+. .++..+ .+.++.+...    +-++.|+-|.|--  +
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v----vNvvPVIakaDtlTle  200 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV----VNVVPVIAKADTLTLE  200 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh----heeeeeEeecccccHH
Confidence                    11110        11112  24567777777663 333333 2334444332    3378888899952  2


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824          133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (218)
                      ++..-.+.+++-...+++.+|.-.+.+...-+..++.
T Consensus       201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~  237 (336)
T KOG1547|consen  201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND  237 (336)
T ss_pred             HHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence            2222233345555668888887777665444443433

>PRK12288 GTPase RsgA; Reviewed

Probab=98.93  E-value=1e-08  Score=82.08  Aligned_cols=87  Identities=13%  Similarity=0.071  Sum_probs=67.2

Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCeEEEEccCCCC
Q 027824           83 YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV-STEDGKAFAEQESLYFMETSALDAT  161 (218)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (218)
                      ..++|.+++|+++....++..+..|+..+..   .++|+++|+||+|+..+.+. ...+..+.....+.+++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999888899999999876543   56899999999999653321 1122233345578899999999999


Q ss_pred             CHHHHHHHHHH
Q 027824          162 NVENAFTEVLT  172 (218)
Q Consensus       162 ~v~~~~~~i~~  172 (218)
                      |++++++.|..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999988864

>PRK00098 GTPase RsgA; Reviewed

Probab=98.91  E-value=6.3e-09  Score=81.95  Aligned_cols=86  Identities=16%  Similarity=0.133  Sum_probs=64.6

Q ss_pred             hhcCCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824           82 YYRGAVGALLVYDVTRHATFQN-VGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA  160 (218)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (218)
                      ...++|.+++|+|+.++..... +..|+..+..   .++|+++|+||+|+.++.+ ......++....+.+++.+||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4589999999999988765444 4667766643   5789999999999964322 122334455567889999999999


Q ss_pred             CCHHHHHHHHH
Q 027824          161 TNVENAFTEVL  171 (218)
Q Consensus       161 ~~v~~~~~~i~  171 (218)
                      .|++++++.+.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999988763

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=2.9e-08  Score=78.54  Aligned_cols=143  Identities=16%  Similarity=0.259  Sum_probs=85.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCC---------CcccceeEEEEEEEEECCeEEEEEEEeCCCch-------hhh
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLE---------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE-------RYR   76 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~   76 (218)
                      .+.++++|..|.|||||+|.|+...+...         ...+..+......+.-++-.+.+.+.||||--       .+.
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            48999999999999999999988754332         11333444444444446677889999999921       110


Q ss_pred             -------hhhhhhh-----------c--CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824           77 -------AITSAYY-----------R--GAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHLVA  135 (218)
Q Consensus        77 -------~~~~~~~-----------~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  135 (218)
                             +....|+           .  .+++.+|.+..+.. .+..+ ...++.+.    ..+.+|.|+-|.|.--..+
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence                   1111121           2  57889999987642 12111 12233333    4566899999999744322


Q ss_pred             c--CHHHHHHHHHHcCCeEEEEccCCC
Q 027824          136 V--STEDGKAFAEQESLYFMETSALDA  160 (218)
Q Consensus       136 ~--~~~~~~~~~~~~~~~~~~~Sa~~~  160 (218)
                      +  ....+.+....+++++|.-..-..
T Consensus       176 l~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  176 LNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            2  223345556667888776555443

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.89  E-value=4.5e-08  Score=75.06  Aligned_cols=154  Identities=18%  Similarity=0.119  Sum_probs=91.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcC-----------CCCCcccce---------------eEEEEEEEEE--------
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEF-----------NLESKSTIG---------------VEFATRSLRI--------   57 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~-----------~~~~~~t~~---------------~~~~~~~~~~--------   57 (218)
                      +...|.+.|.||+|||||+..|.....           ++++..|-|               ...+...+..        
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            356899999999999999998854321           122211111               1111111111        


Q ss_pred             ----------CCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027824           58 ----------DNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK  127 (218)
Q Consensus        58 ----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK  127 (218)
                                +...+-+.|++|.|--....   ....-+|.++++.-..-++.++.+..=+-++.        =|+|+||
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINK  198 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINK  198 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEec
Confidence                      12334577888877322221   23345898999888877777776655444443        2899999


Q ss_pred             CCCCCCcccCHHH--HHHHHH----H--cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824          128 TDLRHLVAVSTED--GKAFAE----Q--ESLYFMETSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       128 ~Dl~~~~~~~~~~--~~~~~~----~--~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                      .|.......-.+.  +.++..    .  +.-+++.+||.+|+|++++++.+.+...-
T Consensus       199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence            9964421111110  111111    1  34479999999999999999888775433

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.88  E-value=6.8e-09  Score=78.50  Aligned_cols=159  Identities=17%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcc-cceeEEEEEEEEECCeEEEEEEEeCCC----------chhh
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKS-TIGVEFATRSLRIDNKVVKAQIWDTAG----------QERY   75 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~   75 (218)
                      +-+.+...+++++|.+++|||||++-+++......... ..+.+.......+..   .+.+.|.||          ..++
T Consensus       130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~  206 (320)
T KOG2486|consen  130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADW  206 (320)
T ss_pred             cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchH
Confidence            34567789999999999999999999987654332222 444444444444443   467999999          1244


Q ss_pred             hhhhhhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc------cC-----HHHH
Q 027824           76 RAITSAYYRG---AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA------VS-----TEDG  141 (218)
Q Consensus        76 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~------~~-----~~~~  141 (218)
                      ..+...|+.+   .--+++.+|++-+-.-.+    ...+......++|+.+|.||+|......      ..     ....
T Consensus       207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D----~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l  282 (320)
T KOG2486|consen  207 DKFTKSYLLERENLVRVFLLVDASVPIQPTD----NPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL  282 (320)
T ss_pred             hHhHHHHHHhhhhhheeeeeeeccCCCCCCC----hHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence            4455555533   234566666654321111    1222223347899999999999743211      11     1111


Q ss_pred             HHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824          142 KAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus       142 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      -+.......+++.+|+.++.|++.++..|.+
T Consensus       283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cccceeccCCceeeecccccCceeeeeehhh
Confidence            1112223457888999999999998766644

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.81  E-value=3.5e-08  Score=79.77  Aligned_cols=94  Identities=19%  Similarity=0.250  Sum_probs=69.1

Q ss_pred             chhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHHH
Q 027824           72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA----FAEQ  147 (218)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~  147 (218)
                      .+.|..+...+.+.++++++|+|+.+..     ..|...+.... .+.|+++|+||+|+... ....+...+    ++++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            5678888888889999999999997643     22444444433 36799999999998642 233344443    3555


Q ss_pred             cCC---eEEEEccCCCCCHHHHHHHHHH
Q 027824          148 ESL---YFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus       148 ~~~---~~~~~Sa~~~~~v~~~~~~i~~  172 (218)
                      .++   .++.+||+++.|++++|..|.+
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~  150 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKK  150 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence            676   4899999999999999998865

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.79  E-value=1.5e-08  Score=71.07  Aligned_cols=54  Identities=22%  Similarity=0.279  Sum_probs=40.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      +++++|.+|+|||||+|++++....... ...+.+.....+.++.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999999987764322 3344455555555554   4689999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=8.1e-08  Score=74.72  Aligned_cols=145  Identities=18%  Similarity=0.125  Sum_probs=99.5

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCc----------C---CCC-CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNE----------F---NLE-SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR   76 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~----------~---~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   76 (218)
                      .+-.+|.-+|+...|||||-..++.-.          +   +.. ....-|+++....+.+......+.-.|+||+.+|.
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            345789999999999999998764311          1   110 11334666667777776666677899999999998


Q ss_pred             hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc---ccCHHHHHHHHHHcC----
Q 027824           77 AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV---AVSTEDGKAFAEQES----  149 (218)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~----  149 (218)
                      .....-..+.|+.|+|+.++|+.-.+ .++.+-...+..  -..+++.+||.|+.++.   ++.+-+++++..+++    
T Consensus       132 KNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd  208 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD  208 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            87777778899999999999964322 233233333322  13377779999998543   344556788888875    


Q ss_pred             -CeEEEEccC
Q 027824          150 -LYFMETSAL  158 (218)
Q Consensus       150 -~~~~~~Sa~  158 (218)
                       +|++.=||.
T Consensus       209 ~~PvI~GSAL  218 (449)
T KOG0460|consen  209 NTPVIRGSAL  218 (449)
T ss_pred             CCCeeecchh
Confidence             468887665

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.77  E-value=1.4e-08  Score=73.49  Aligned_cols=57  Identities=23%  Similarity=0.385  Sum_probs=41.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG   71 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G   71 (218)
                      ...++++++|.|++|||||+|++.+....... +..|++.....+.++.   .+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence            44589999999999999999999987653322 3344555444444443   478999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.73  E-value=4.1e-08  Score=70.14  Aligned_cols=56  Identities=16%  Similarity=0.232  Sum_probs=39.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG   71 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G   71 (218)
                      ..++|+++|.+|+|||||+|++.+....... ++.+.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            3578999999999999999999986653332 3344444444444433   257999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=6e-08  Score=82.34  Aligned_cols=118  Identities=19%  Similarity=0.209  Sum_probs=86.2

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcC------------C--CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF------------N--LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER   74 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~------------~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   74 (218)
                      +....-+|.++.+...|||||...|+....            .  .+...+-|++.....+.+-...+.+.++|+||+-+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            456678999999999999999998876431            1  12224555666555566656678899999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824           75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL  130 (218)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  130 (218)
                      |.+......+-+|+.++.+|+..+-..+...-..+.+.    .+...|+|+||+|.
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkidr  136 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence            99999988999999999999987644433222222222    34567999999993

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.69  E-value=7.2e-07  Score=70.66  Aligned_cols=158  Identities=16%  Similarity=0.104  Sum_probs=94.0

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcc--------------cceeEEEEEEEEEC----------------
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKS--------------TIGVEFATRSLRID----------------   58 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~--------------t~~~~~~~~~~~~~----------------   58 (218)
                      .-+.-+.|.++|+...|||||+-.|..+..+.-.-.              ..+-+.....+-++                
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            345568999999999999999988766543221110              01111111111111                


Q ss_pred             -----CeEEEEEEEeCCCchhhhhhh--hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           59 -----NKVVKAQIWDTAGQERYRAIT--SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        59 -----~~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                           ..+--+.+.|+.|++.|-...  -.+-...|..++++.++++-+--. ++.+-.+.   .-+.|+|+++||+|+.
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~---a~~lPviVvvTK~D~~  268 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL---AMELPVIVVVTKIDMV  268 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh---hhcCCEEEEEEecccC
Confidence                 111247899999999886433  233467999999999998754322 22222222   2578999999999996


Q ss_pred             CCcccC--HHHHHHH----------------------HHHc---CCeEEEEccCCCCCHHHHHHHH
Q 027824          132 HLVAVS--TEDGKAF----------------------AEQE---SLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus       132 ~~~~~~--~~~~~~~----------------------~~~~---~~~~~~~Sa~~~~~v~~~~~~i  170 (218)
                      .+....  .+++..+                      +.+.   -+|+|.+|+.+|+|.+-+...+
T Consensus       269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            542211  1111111                      1111   2589999999999977554433

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.65  E-value=4.4e-07  Score=83.59  Aligned_cols=112  Identities=24%  Similarity=0.336  Sum_probs=71.7

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCCCCC----ccc--ceeEEEEEEEEECCeEEEEEEEeCCCc----h----hhhhhhhh
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNEFNLES----KST--IGVEFATRSLRIDNKVVKAQIWDTAGQ----E----RYRAITSA   81 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~----~----~~~~~~~~   81 (218)
                      .+|+|++|+||||++..- +-.++-..    ..+  .+-+. ...+.+.+.-   .++|++|.    +    .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCE---EEEcCCCccccCCCcccccHHHHHH
Confidence            589999999999999876 43442211    011  11111 2333444444   49999992    1    22233444


Q ss_pred             hh---------cCCcEEEEEEECCCh-----hh----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           82 YY---------RGAVGALLVYDVTRH-----AT----FQNVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        82 ~~---------~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      ++         +..+++|+++|+.+-     +.    -..++..+.++....+...|++|++||+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            33         358999999998742     21    13456667777777778999999999999854

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.64  E-value=8.1e-06  Score=57.28  Aligned_cols=146  Identities=17%  Similarity=0.231  Sum_probs=80.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCC-Cc------------------
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA-GQ------------------   72 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~-G~------------------   72 (218)
                      ..+||.+.|+||+||||++.++........+ ...|  +...++.-++..+-|.|.|+. |.                  
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            4589999999999999999988654332211 2222  334445556666667777766 30                  


Q ss_pred             ---hhhh----hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 027824           73 ---ERYR----AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFA  145 (218)
Q Consensus        73 ---~~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  145 (218)
                         +.+.    ......++.+|+  +++|---+..+. ...+...+......+.|+|.++.+.+..       ....++-
T Consensus        81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr~-------P~v~~ik  150 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSRH-------PLVQRIK  150 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccCC-------hHHHHhh
Confidence               1111    112234456774  445654443221 1334555555556788988888876541       1223333


Q ss_pred             HHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          146 EQESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       146 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      ...++.+|    .+.+|=+.++..+...+
T Consensus       151 ~~~~v~v~----lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         151 KLGGVYVF----LTPENRNRILNEILSVL  175 (179)
T ss_pred             hcCCEEEE----EccchhhHHHHHHHHHh
Confidence            33333443    34444446666666544

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2.6e-08  Score=76.38  Aligned_cols=159  Identities=18%  Similarity=0.172  Sum_probs=99.9

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCc---CCCCCcccceeEEEEE--EE-E--------------------------E
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE---FNLESKSTIGVEFATR--SL-R--------------------------I   57 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~--~~-~--------------------------~   57 (218)
                      ++-.++|.-+|+...||||++..+.+-.   |..+.....++.....  .+ .                          .
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            4457899999999999999999875521   1111111111111000  00 0                          0


Q ss_pred             ---CC---eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027824           58 ---DN---KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----ATFQNVGRWLRELREHTDPNIIVMLIGNK  127 (218)
Q Consensus        58 ---~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~ivv~nK  127 (218)
                         .+   -...+.+.|+||++...+....-..-.|+.++.+..+..    .+-+.    +..+..+  .-..++++-||
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEH----LaaveiM--~LkhiiilQNK  188 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEH----LAAVEIM--KLKHIIILQNK  188 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhH----HHHHHHh--hhceEEEEech
Confidence               00   012578999999998876655544556777888777643    33333    3333322  12458999999


Q ss_pred             CCCCCCccc--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          128 TDLRHLVAV--STEDGKAFAEQ---ESLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       128 ~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      +|+..+.+.  ..++...|...   .+++++.+||.-+.|++.+.++|++.+
T Consensus       189 iDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  189 IDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            999664432  23345555554   578999999999999999999998866

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=4.6e-07  Score=75.08  Aligned_cols=153  Identities=13%  Similarity=0.131  Sum_probs=89.9

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      .+-++++-++|+|+||+||||||+.|..... .+....+   ..+.+ .+.++.-.+.++++|.  +... .....+-+|
T Consensus        64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~t-k~ti~~i---~GPiT-vvsgK~RRiTflEcp~--Dl~~-miDvaKIaD  135 (1077)
T COG5192          64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT-KQTIDEI---RGPIT-VVSGKTRRITFLECPS--DLHQ-MIDVAKIAD  135 (1077)
T ss_pred             ccCCCCeEEEeecCCCCChhHHHHHHHHHHH-Hhhhhcc---CCceE-EeecceeEEEEEeChH--HHHH-HHhHHHhhh
Confidence            3456678899999999999999998876432 1111110   11111 1455667899999993  2222 223456689


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccCHHHH-----HHHHHH-cCCeEEEEccC-C
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVSTEDG-----KAFAEQ-ESLYFMETSAL-D  159 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~-~~~~~~~~Sa~-~  159 (218)
                      .+++.+|.+-+..++.+. ++..+..   ++.| ++-|+|..|+-......-+..     +-|..- .|+++|.+|.. +
T Consensus       136 LVlLlIdgnfGfEMETmE-FLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n  211 (1077)
T COG5192         136 LVLLLIDGNFGFEMETME-FLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN  211 (1077)
T ss_pred             eeEEEeccccCceehHHH-HHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence            999999998765555432 2444444   4445 677899999955322111111     112222 47888888875 4


Q ss_pred             CCCHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLT  172 (218)
Q Consensus       160 ~~~v~~~~~~i~~  172 (218)
                      |.-.+.-+-.|..
T Consensus       212 GRYpDreilnLsR  224 (1077)
T COG5192         212 GRYPDREILNLSR  224 (1077)
T ss_pred             CCCCCHHHHHHHH
Confidence            4444433334444

>cd01858 NGP_1 NGP-1

Probab=98.62  E-value=2.4e-07  Score=66.20  Aligned_cols=87  Identities=13%  Similarity=0.090  Sum_probs=55.9

Q ss_pred             hhcCCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027824           82 YYRGAVGALLVYDVTRHAT--FQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALD  159 (218)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (218)
                      .++.+|.+++|+|+.++..  ...+..++   .. ...+.|+|+|+||+|+..+... ......+...+....+.+||+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            4678999999999988632  22222322   22 2346899999999999543221 1112222222223357799999


Q ss_pred             CCCHHHHHHHHHHH
Q 027824          160 ATNVENAFTEVLTQ  173 (218)
Q Consensus       160 ~~~v~~~~~~i~~~  173 (218)
                      +.|++++++.+.+.
T Consensus        80 ~~~~~~L~~~l~~~   93 (157)
T cd01858          80 PFGKGSLIQLLRQF   93 (157)
T ss_pred             cccHHHHHHHHHHH
Confidence            99999999888664

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.62  E-value=1.3e-07  Score=68.50  Aligned_cols=58  Identities=22%  Similarity=0.308  Sum_probs=41.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      +..++++++|.+++|||||++++.+..+... ....+++.....+.++   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4457999999999999999999998776322 2333344444444444   34689999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01859 MJ1464 MJ1464

Probab=98.60  E-value=1.6e-07  Score=66.95  Aligned_cols=56  Identities=21%  Similarity=0.306  Sum_probs=40.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG   71 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G   71 (218)
                      ...+++++|.+++|||||++++.+.... ...++.+.+.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            4578999999999999999999876532 3335555554433333333   578999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.58  E-value=2e-07  Score=72.82  Aligned_cols=58  Identities=21%  Similarity=0.391  Sum_probs=41.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      ...++++++|.||+|||||+|+|.+....... ...+.+.....+.++.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence            34689999999999999999999987643332 3334444444555543   4689999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=2.2e-06  Score=72.46  Aligned_cols=144  Identities=14%  Similarity=0.149  Sum_probs=81.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-ccceeEE----------------------------------------
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEF----------------------------------------   50 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~----------------------------------------   50 (218)
                      .-.||++.|..++||||++|.++....-++.. +++.+-.                                        
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            35799999999999999999988765433221 1100000                                        


Q ss_pred             --EEEEEEECCeE-----EEEEEEeCCCch---hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc
Q 027824           51 --ATRSLRIDNKV-----VKAQIWDTAGQE---RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII  120 (218)
Q Consensus        51 --~~~~~~~~~~~-----~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p  120 (218)
                        .-..+..+...     -.+.++|.||.+   +..+-...+...+|++|+|.++.+-.+.... .++.....   .+.-
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~Kpn  263 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EKPN  263 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cCCc
Confidence              00000001110     136788999954   4445556677899999999999876554442 22222222   2334


Q ss_pred             EEEEEeCCCCCCCcccCHHHHHHHHHHc--------CCeEEEEccCC
Q 027824          121 VMLIGNKTDLRHLVAVSTEDGKAFAEQE--------SLYFMETSALD  159 (218)
Q Consensus       121 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~  159 (218)
                      ++++.||.|.....+.-.+.++....+.        .-.+|+||++.
T Consensus       264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            6667788898654333223333322222        12478888653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.57  E-value=2.6e-07  Score=72.48  Aligned_cols=58  Identities=24%  Similarity=0.402  Sum_probs=42.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      ...++++++|.|++|||||+|+|.+....... ...|++.....+..+.   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            45689999999999999999999987653322 3444555454555543   4679999995

>TIGR00092 GTP-binding protein YchF

Probab=98.57  E-value=2.9e-07  Score=73.72  Aligned_cols=83  Identities=17%  Similarity=0.018  Sum_probs=60.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcC-CCCCcccceeEEEEEEEEECCeE---------------EEEEEEeCCCchhh--
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF-NLESKSTIGVEFATRSLRIDNKV---------------VKAQIWDTAGQERY--   75 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~--   75 (218)
                      +++.++|.|++|||||++.+++... .....|..+.+.....+.+.+..               ..+.+.|+||...-  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999876 55444555555555555554421               36789999995321  


Q ss_pred             -----hhhhhhhhcCCcEEEEEEECC
Q 027824           76 -----RAITSAYYRGAVGALLVYDVT   96 (218)
Q Consensus        76 -----~~~~~~~~~~~d~~i~v~d~~   96 (218)
                           .......++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                 223334578999999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.57  E-value=4.9e-07  Score=64.44  Aligned_cols=85  Identities=14%  Similarity=0.008  Sum_probs=55.5

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      |.+++|+|+.++.+...  .++.. ......++|+|+|+||+|+....++. +....+....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            68999999988755432  22221 11223578999999999995422110 1111222234566899999999999999


Q ss_pred             HHHHHHHHH
Q 027824          167 FTEVLTQIY  175 (218)
Q Consensus       167 ~~~i~~~i~  175 (218)
                      ++.+.+...
T Consensus        77 ~~~i~~~~~   85 (155)
T cd01849          77 ESAFTKQTN   85 (155)
T ss_pred             HHHHHHHhH
Confidence            999877654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=3e-07  Score=72.56  Aligned_cols=157  Identities=20%  Similarity=0.258  Sum_probs=96.4

Q ss_pred             CCCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCC----------------C-------cccceeEEEEEEEEECC---
Q 027824            6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE----------------S-------KSTIGVEFATRSLRIDN---   59 (218)
Q Consensus         6 ~~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~----------------~-------~~t~~~~~~~~~~~~~~---   59 (218)
                      |+.+.-..++++++|.-.+|||||+--|..+..+.-                .       ..+.|++...+.+.+..   
T Consensus       160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t  239 (591)
T KOG1143|consen  160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT  239 (591)
T ss_pred             CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence            345555679999999999999999987765543211                1       12223332222222211   


Q ss_pred             -------eEEEEEEEeCCCchhhhhhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824           60 -------KVVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL  130 (218)
Q Consensus        60 -------~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  130 (218)
                             ..--+.++|..|+..|.......+.  ..|..++|+++..+-.+.. ++.+-.+..   .++|++++++|+|+
T Consensus       240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl  315 (591)
T KOG1143|consen  240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDL  315 (591)
T ss_pred             HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeecc
Confidence                   1124789999999998765543332  3577888999887654432 222333333   57999999999999


Q ss_pred             CCCcc------------------------cCHHHHHHHHHH----cCCeEEEEccCCCCCHHHH
Q 027824          131 RHLVA------------------------VSTEDGKAFAEQ----ESLYFMETSALDATNVENA  166 (218)
Q Consensus       131 ~~~~~------------------------~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~~  166 (218)
                      ....-                        -+..++...+++    +-.|+|-+|+.+|+|++-+
T Consensus       316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence            64311                        122222222222    3458999999999997644

>cd01856 YlqF YlqF

Probab=98.55  E-value=3.7e-07  Score=66.16  Aligned_cols=98  Identities=13%  Similarity=0.028  Sum_probs=63.9

Q ss_pred             CCch-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 027824           70 AGQE-RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE  148 (218)
Q Consensus        70 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  148 (218)
                      ||+. .........++++|.+++|+|+.++...... .+...+     .+.|+++|+||+|+......  ....++....
T Consensus         3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~   74 (171)
T cd01856           3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESK   74 (171)
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhc
Confidence            4432 3344556678899999999999876432211 111211     35789999999999543211  1122333334


Q ss_pred             CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824          149 SLYFMETSALDATNVENAFTEVLTQIY  175 (218)
Q Consensus       149 ~~~~~~~Sa~~~~~v~~~~~~i~~~i~  175 (218)
                      +..++.+||+++.|++++...+...+.
T Consensus        75 ~~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          75 GEKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            567899999999999999998887653

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.55  E-value=1.7e-07  Score=72.90  Aligned_cols=85  Identities=15%  Similarity=0.174  Sum_probs=64.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC---------------eEEEEEEEeCCCch---
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN---------------KVVKAQIWDTAGQE---   73 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~---   73 (218)
                      +.++|.+||.|++|||||+|.|++........|..+++.....+.+..               ....+.++|++|.-   
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            468999999999999999999999888777778888887666655432               22468999999832   


Q ss_pred             -hhhhhhh---hhhcCCcEEEEEEECC
Q 027824           74 -RYRAITS---AYYRGAVGALLVYDVT   96 (218)
Q Consensus        74 -~~~~~~~---~~~~~~d~~i~v~d~~   96 (218)
                       .-..+-.   .-++.+|+++-|+++.
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence             2233333   3457899999998863

>cd01855 YqeH YqeH

Probab=98.54  E-value=1.8e-07  Score=69.04  Aligned_cols=56  Identities=21%  Similarity=0.377  Sum_probs=39.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCC-------CCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL-------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAG   71 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G   71 (218)
                      ..+++++|.+|+|||||+|.|.+.....       ......+++.....+.++.   .+.|+||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            3589999999999999999998754311       1112234555555555543   468999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=1.5e-06  Score=65.07  Aligned_cols=160  Identities=19%  Similarity=0.246  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCC--ChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCe--EEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824           14 FKLVLIGDSGV--GKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK--VVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        14 ~~i~l~G~~~~--GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      .-++|+|-+|+  ||.+|+.+|....+..+......+.++..++.-...  .+.+.|--..  +++.-..........++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl~a~   82 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQAF   82 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc--chhccCCcccccceeeE
Confidence            45789999998  999999999888887666555556665555532211  2333333222  22322222334566789


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---------------------------c--------
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL---------------------------V--------  134 (218)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~---------------------------~--------  134 (218)
                      +++||++....+..+..|+.......  --.++.++||.|....                           .        
T Consensus        83 vmvfdlse~s~l~alqdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs  160 (418)
T KOG4273|consen   83 VMVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS  160 (418)
T ss_pred             EEEEeccchhhhHHHHhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence            99999999999999999977542211  1124677899997411                           0        


Q ss_pred             ------c---cCHHHHHHHHHHcCCeEEEEccCC------------CCCHHHHHHHHHHHHHHH
Q 027824          135 ------A---VSTEDGKAFAEQESLYFMETSALD------------ATNVENAFTEVLTQIYKI  177 (218)
Q Consensus       135 ------~---~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~v~~~~~~i~~~i~~~  177 (218)
                            .   ..-..+.+|+.++|+.|++.++.+            -.||+.+|..+.-..+..
T Consensus       161 sllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg  224 (418)
T KOG4273|consen  161 SLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG  224 (418)
T ss_pred             cccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence                  0   011225678888999999988843            357888888876655543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.52  E-value=1.1e-07  Score=67.37  Aligned_cols=60  Identities=23%  Similarity=0.279  Sum_probs=34.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCC------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNL------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR   76 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   76 (218)
                      -.++++|++|||||||+|.|++.....      .......++.....+.++...   .|+||||-.++.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence            468999999999999999998863211      111112223334445555544   499999965543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.52  E-value=5.5e-07  Score=63.11  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=52.1

Q ss_pred             hhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027824           80 SAYYRGAVGALLVYDVTRHATFQ--NVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA  157 (218)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (218)
                      ...+..+|++++|+|+.++.+..  .+..|+...   . .++|+++|+||+|+..+..  .....++....+..++.+||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            34578899999999998876533  334444332   1 4689999999999854322  12334455556788999999


Q ss_pred             CCCC
Q 027824          158 LDAT  161 (218)
Q Consensus       158 ~~~~  161 (218)
                      .++.
T Consensus        80 ~~~~   83 (141)
T cd01857          80 LKEN   83 (141)
T ss_pred             cCCC
Confidence            8765

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.51  E-value=8.6e-07  Score=69.22  Aligned_cols=99  Identities=15%  Similarity=0.148  Sum_probs=64.4

Q ss_pred             CCch-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 027824           70 AGQE-RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE  148 (218)
Q Consensus        70 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  148 (218)
                      |||. .........++.+|++|+|+|+.++.+...  .++..+.    .+.|+|+|+||+|+......  ....+.....
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~   76 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAVT--KQWLKYFEEK   76 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHHH--HHHHHHHHHc
Confidence            5553 223445667889999999999987644322  1111111    25799999999999542111  1111222334


Q ss_pred             CCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824          149 SLYFMETSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       149 ~~~~~~~Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                      +.+++.+|++++.|++++++.+.+.+.+
T Consensus        77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        77 GIKALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            6678999999999999999888776644

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=2e-07  Score=74.48  Aligned_cols=155  Identities=16%  Similarity=0.172  Sum_probs=105.6

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCc--------CCCC--------CcccceeEEEEEEEEECCeEEEEEEEeCCCch
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE--------FNLE--------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE   73 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~--------~~~~--------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~   73 (218)
                      .....+|.++.+..+||||...|++.-.        ...-        ....-|+++...-+.++.+...+.++||||+-
T Consensus        34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv  113 (753)
T KOG0464|consen   34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV  113 (753)
T ss_pred             hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence            3345689999999999999999875421        1100        01224667777778889999999999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe--
Q 027824           74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY--  151 (218)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--  151 (218)
                      +|+--...+++-.|+.+.|||.+.+-.-+.+.-|.+    ..+.++|-+.++||+|.......  ......-.+.+++  
T Consensus       114 df~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~anfe--~avdsi~ekl~ak~l  187 (753)
T KOG0464|consen  114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAANFE--NAVDSIEEKLGAKAL  187 (753)
T ss_pred             eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhhhh--hHHHHHHHHhCCceE
Confidence            999888889999999999999998766666666744    34478899999999997542211  1123333445554  


Q ss_pred             EEEEccCCCCCHHHHHHHH
Q 027824          152 FMETSALDATNVENAFTEV  170 (218)
Q Consensus       152 ~~~~Sa~~~~~v~~~~~~i  170 (218)
                      ...+-.-.+.++..-|-.+
T Consensus       188 ~l~lpi~eak~fnkg~ldi  206 (753)
T KOG0464|consen  188 KLQLPIGEAKGFNKGFLDI  206 (753)
T ss_pred             EEEecccccccccchHHHH
Confidence            2333334445553333333

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.47  E-value=2.1e-05  Score=65.25  Aligned_cols=150  Identities=17%  Similarity=0.208  Sum_probs=92.5

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-c------------------------------c------------
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-S------------------------------T------------   45 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~------------------------------t------------   45 (218)
                      ..++..+|+|+|+.++||||.+..+......+... .                              |            
T Consensus       304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~  383 (980)
T KOG0447|consen  304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI  383 (980)
T ss_pred             ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence            45778999999999999999998764432211000 0                              0            


Q ss_pred             ---------ceeEEE--EEEEEECCeE-EEEEEEeCCC-------------chhhhhhhhhhhcCCcEEEEEEECCChhh
Q 027824           46 ---------IGVEFA--TRSLRIDNKV-VKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYDVTRHAT  100 (218)
Q Consensus        46 ---------~~~~~~--~~~~~~~~~~-~~~~i~D~~G-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s  100 (218)
                               .|.++.  ...+.+.+.+ -...+.|.||             .+....+..+++.+.+++|+|+--...+.
T Consensus       384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA  463 (980)
T KOG0447|consen  384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA  463 (980)
T ss_pred             HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence                     122222  2223333433 2577899999             22334566789999999999986443221


Q ss_pred             HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCeEEEEccCCC
Q 027824          101 FQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE-----SLYFMETSALDA  160 (218)
Q Consensus       101 ~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~  160 (218)
                      -...  .-..+.+....+...|+|+||.|+.+..-.+...++++....     -+.||-+-.-.|
T Consensus       464 ERSn--VTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG  526 (980)
T KOG0447|consen  464 ERSI--VTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG  526 (980)
T ss_pred             hhhh--HHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence            1111  112234455578889999999999887777777777776642     223665544433

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.47  E-value=3.6e-07  Score=72.67  Aligned_cols=57  Identities=21%  Similarity=0.366  Sum_probs=44.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      ..++++++|.|++|||||||+|.+..... ..+..|++.....+.++..   +.++||||.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCCC---eEEecCCCc
Confidence            34789999999999999999999987632 2244477777777777664   679999994

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.46  E-value=5.2e-06  Score=62.81  Aligned_cols=86  Identities=16%  Similarity=0.105  Sum_probs=52.8

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcC--cCCCCCc---ccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh------hh
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKN--EFNLESK---STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA------IT   79 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~--~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~   79 (218)
                      .+..-|.++|++++|||+|+|+|++.  .+.....   .|.|+-.....+.. +....+.++||+|......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence            45678999999999999999999998  5543322   22222222221111 2346789999999543221      11


Q ss_pred             hhhhc--CCcEEEEEEECCC
Q 027824           80 SAYYR--GAVGALLVYDVTR   97 (218)
Q Consensus        80 ~~~~~--~~d~~i~v~d~~~   97 (218)
                      ...+.  -++.+||..+.+.
T Consensus        84 ~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          84 LFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcc
Confidence            22222  3788888777764

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK01889 GTPase RsgA; Reviewed

Probab=98.45  E-value=1.2e-06  Score=70.81  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=59.3

Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCC
Q 027824           83 YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-QESLYFMETSALDAT  161 (218)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  161 (218)
                      ..++|.+++|+++..+.....+..++..+..   .+++.++|+||+|+.++..   +....+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence            5789999999999754455555666666554   4677899999999965321   11222222 357789999999999


Q ss_pred             CHHHHHHHHH
Q 027824          162 NVENAFTEVL  171 (218)
Q Consensus       162 ~v~~~~~~i~  171 (218)
                      |++++..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888773

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=1.6e-06  Score=72.34  Aligned_cols=118  Identities=19%  Similarity=0.184  Sum_probs=82.3

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCC-----CC-----------cccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-----ES-----------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~-----~~-----------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      +....-+|.+..+-.+||||+-++.+.-..-.     ..           ...-|++....-......++.+.++||||+
T Consensus        35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH  114 (721)
T KOG0465|consen   35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH  114 (721)
T ss_pred             chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence            33456788999999999999999876432110     00           011234444444444555788999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824           73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL  130 (218)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  130 (218)
                      -+|.--....++-.|+.+++++...+-.-+...-|.+.-.    -++|.|.++||.|.
T Consensus       115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDR  168 (721)
T KOG0465|consen  115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDR  168 (721)
T ss_pred             eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhh
Confidence            8887667777888999999999887654455555654443    47899999999997

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.39  E-value=1e-06  Score=62.75  Aligned_cols=56  Identities=20%  Similarity=0.280  Sum_probs=38.1

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAG   71 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G   71 (218)
                      ....+++++|.+++|||||+|.+.+..... ...+.  ++.....+..+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~--~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPG--TTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCC--cccceEEEEec---CCEEEEECCC
Confidence            456889999999999999999999865322 22222  22323333333   2478999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.39  E-value=1.8e-06  Score=67.76  Aligned_cols=100  Identities=16%  Similarity=0.126  Sum_probs=65.1

Q ss_pred             CCCch-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 027824           69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ  147 (218)
Q Consensus        69 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  147 (218)
                      .|||. .-.......+..+|++|+|+|+.++.+...  .++..+.    .+.|+++|+||+|+.+...  .+...++...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            46654 223344567889999999999987644322  1122221    2679999999999854211  1112222334


Q ss_pred             cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824          148 ESLYFMETSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~  176 (218)
                      .+..++.+|++++.|++++++.+...+..
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            46778999999999999999888776544

>PRK13796 GTPase YqeH; Provisional

Probab=98.39  E-value=3.6e-06  Score=68.29  Aligned_cols=94  Identities=20%  Similarity=0.288  Sum_probs=61.7

Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH----HHHc
Q 027824           73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF----AEQE  148 (218)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~  148 (218)
                      +.|...........+.+++|+|+.+..     ..|...+.... .+.|+++|+||+|+... ....+...+|    ++..
T Consensus        57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            345554444333334899999998742     22444444433 36789999999999642 2333344444    4455


Q ss_pred             CC---eEEEEccCCCCCHHHHHHHHHHH
Q 027824          149 SL---YFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus       149 ~~---~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      ++   .++.+||+++.|++++++.|.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   58999999999999999988653

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.35  E-value=3.2e-06  Score=60.42  Aligned_cols=64  Identities=14%  Similarity=0.117  Sum_probs=38.4

Q ss_pred             EEEEEEEeCCCchhhhhhhhh--------hhcCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824           61 VVKAQIWDTAGQERYRAITSA--------YYRGAVGALLVYDVTRHAT-FQNVGRWLRELREHTDPNIIVMLIGNKTDL  130 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  130 (218)
                      .....++|++|..+...+...        ..-.++.+++++|+..-.. +.....+...+....      ++++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence            356789999996543333322        1235788999999764322 222233445554433      789999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=7.3e-06  Score=74.32  Aligned_cols=111  Identities=28%  Similarity=0.319  Sum_probs=68.3

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCCCC--C----cccceeEEEEEEEEECCeEEEEEEEeCCCc--------hhhhhhhhh
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNEFNLE--S----KSTIGVEFATRSLRIDNKVVKAQIWDTAGQ--------ERYRAITSA   81 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~~~~~--~----~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~   81 (218)
                      -+|+|++|+||||++..- +..|+..  .    ....+  .......+.+.-   .++||.|.        +.-...|..
T Consensus       128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g--T~~cdwwf~dea---VlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG--TRNCDWWFTDEA---VLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC--CcccCcccccce---EEEcCCcceecccCcchhhHHHHHH
Confidence            378999999999998643 2222211  1    01111  112223444444   48999982        122334443


Q ss_pred             h---------hcCCcEEEEEEECCCh-----h----hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           82 Y---------YRGAVGALLVYDVTRH-----A----TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        82 ~---------~~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      +         .+..+++|+.+|+.+-     .    ....++.-+.++........|++|++||.|+..
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence            3         2568999999999742     1    123345556677777778899999999999855

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.29  E-value=8e-06  Score=64.86  Aligned_cols=143  Identities=17%  Similarity=0.172  Sum_probs=79.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCC---------------------cccceeEEEEEEEEE-------------
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLES---------------------KSTIGVEFATRSLRI-------------   57 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~---------------------~~t~~~~~~~~~~~~-------------   57 (218)
                      ....|+++|++|+||||++..+.........                     ....+..+.......             
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            3468899999999999999987543211000                     001111211110000             


Q ss_pred             CCeEEEEEEEeCCCchhhhhh----hhhh--------hcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEE
Q 027824           58 DNKVVKAQIWDTAGQERYRAI----TSAY--------YRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLI  124 (218)
Q Consensus        58 ~~~~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv  124 (218)
                      ....+.+.|+||+|.......    ...+        -...+..++|+|++.+. .+..+    ..+....   .+.-+|
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~~~---~~~giI  265 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHEAV---GLTGII  265 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHhhC---CCCEEE
Confidence            123356899999996432211    1111        13467789999998542 33332    2222111   234789


Q ss_pred             EeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824          125 GNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF  167 (218)
Q Consensus       125 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (218)
                      +||.|....-    =.+...+...++|+..++  +|++++++-
T Consensus       266 lTKlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        266 LTKLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             EECCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            9999954321    234555677799988888  667777663

>PRK12288 GTPase RsgA; Reviewed

Probab=98.28  E-value=2.1e-06  Score=68.98  Aligned_cols=58  Identities=22%  Similarity=0.315  Sum_probs=37.1

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCCCC-C-----cccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNEFNLE-S-----KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR   76 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~~~~~-~-----~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   76 (218)
                      ++++|.+|+|||||+|+|++...... .     .....++.....+.+.+..   .|+||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            78999999999999999997643211 1     1111123334444454333   499999976655

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.28  E-value=6.7e-06  Score=62.04  Aligned_cols=90  Identities=21%  Similarity=0.176  Sum_probs=60.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh-------hhhhhhhhc
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY-------RAITSAYYR   84 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~   84 (218)
                      ...++.++|.|++||||++..+.+...+.......+.......+.+.+.  ++++.|.||.-+-       ........+
T Consensus        58 g~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~ga--Kiqlldlpgiiegakdgkgrg~qviavar  135 (358)
T KOG1487|consen   58 GDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGA--KIQLLDLPGIIEGAKDGKGRGKQVIAVAR  135 (358)
T ss_pred             cceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecccc--ceeeecCcchhcccccCCCCccEEEEEee
Confidence            3468999999999999999999886654444344444444444545554  5799999994322       122234456


Q ss_pred             CCcEEEEEEECCChhhHHH
Q 027824           85 GAVGALLVYDVTRHATFQN  103 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~  103 (218)
                      -++.+++|.|+..|-+-..
T Consensus       136 tcnli~~vld~~kp~~hk~  154 (358)
T KOG1487|consen  136 TCNLIFIVLDVLKPLSHKK  154 (358)
T ss_pred             cccEEEEEeeccCcccHHH
Confidence            7889999999877655443

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.26  E-value=6.5e-06  Score=64.01  Aligned_cols=94  Identities=16%  Similarity=0.066  Sum_probs=56.8

Q ss_pred             EEEEEEEeCCCchhhhhhhh-------hhh-----cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027824           61 VVKAQIWDTAGQERYRAITS-------AYY-----RGAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVMLIGNK  127 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK  127 (218)
                      .+.+.|+||+|.........       ...     ..+|.+++|+|++.+ +.+...    ..+....   .+.-+|+||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEEc
Confidence            35789999999654332211       111     247899999999754 233332    2222211   135789999


Q ss_pred             CCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824          128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF  167 (218)
Q Consensus       128 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (218)
                      .|.....    -.+..+....+.|+..++  +|++++++-
T Consensus       227 lDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       227 LDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             cCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            9974422    234555556789988888  666676653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.25  E-value=1.8e-06  Score=69.32  Aligned_cols=59  Identities=25%  Similarity=0.209  Sum_probs=37.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCC-ccc-----ceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLES-KST-----IGVEFATRSLRIDNKVVKAQIWDTAGQERYR   76 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~-~~t-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   76 (218)
                      .++++|++|+|||||+|.|++....... .+.     ..++.....+.+.+..   .|+||||-..+.
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~  238 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPD  238 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccccc
Confidence            3799999999999999999976432211 111     1133334444454333   599999975433

>PRK14974 cell division protein FtsY; Provisional

Probab=98.24  E-value=1.1e-05  Score=64.34  Aligned_cols=94  Identities=16%  Similarity=0.074  Sum_probs=56.1

Q ss_pred             EEEEEEeCCCchhhhh-h---hhhh--hcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824           62 VKAQIWDTAGQERYRA-I---TSAY--YRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV  134 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  134 (218)
                      +.+.|+||+|...... +   ...+  .-+.|.+++|+|+..+. ..+.+    ..+....   .+--+|+||.|....-
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~---~~~giIlTKlD~~~~~  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV---GIDGVILTKVDADAKG  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC---CCCEEEEeeecCCCCc
Confidence            4589999999653221 1   1112  23578899999997653 22222    2222211   1247889999975422


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824          135 AVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      -    .+...+...+.|+..++  +|++++++..
T Consensus       296 G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        296 G----AALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             c----HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence            1    24455556788988887  6888877643

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.23  E-value=2.1e-06  Score=66.58  Aligned_cols=59  Identities=24%  Similarity=0.233  Sum_probs=40.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc------CCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE------FNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR   76 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   76 (218)
                      -.+++|++|+|||||+|+|....      .+........++.....+.+++..+   |+||||-.++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence            57899999999999999998642      2222222233445566667765554   99999976554

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.22  E-value=3.4e-05  Score=62.42  Aligned_cols=156  Identities=18%  Similarity=0.223  Sum_probs=87.3

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCC--------------CCCcccceeEE----------EEEEEEE-CCeEEEEE
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN--------------LESKSTIGVEF----------ATRSLRI-DNKVVKAQ   65 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~----------~~~~~~~-~~~~~~~~   65 (218)
                      ...+-|.|+||.-+||||||.||.....-              +-+....|.++          .-..+.+ ++..+++.
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR   94 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR   94 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence            34588999999999999999998653210              00001111111          1123334 46678999


Q ss_pred             EEeCCCch-------------hh-hhhhh--------h-------hh--cCCcEEEEEEECC----ChhhHHHH-HHHHH
Q 027824           66 IWDTAGQE-------------RY-RAITS--------A-------YY--RGAVGALLVYDVT----RHATFQNV-GRWLR  109 (218)
Q Consensus        66 i~D~~G~~-------------~~-~~~~~--------~-------~~--~~~d~~i~v~d~~----~~~s~~~~-~~~~~  109 (218)
                      +.||.|--             ++ ..-|.        +       .+  +..=++++.-|-+    .++.+... ..-..
T Consensus        95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~  174 (492)
T PF09547_consen   95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE  174 (492)
T ss_pred             EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence            99999810             00 00111        0       11  2334566666654    23444332 22344


Q ss_pred             HHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC--CCCCHHHHHHHHH
Q 027824          110 ELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL--DATNVENAFTEVL  171 (218)
Q Consensus       110 ~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~v~~~~~~i~  171 (218)
                      ++..   -++|+++++|-.+-..  +...+.+.++..+++++++.+++.  +.+++..+|..++
T Consensus       175 ELk~---igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  175 ELKE---IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHHH---hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence            4443   6789999999987433  233345667777789988777764  4455555554443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.22  E-value=2.3e-06  Score=70.16  Aligned_cols=57  Identities=19%  Similarity=0.208  Sum_probs=46.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      ..+.|.+||.|+|||||+||.|.+....... .|.|-+.+..++.+..   .+.+.||||.
T Consensus       313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             ceeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCc
Confidence            3799999999999999999999998764433 6777777777777765   4579999994

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.16  E-value=1.5e-05  Score=65.42  Aligned_cols=113  Identities=19%  Similarity=0.217  Sum_probs=77.3

Q ss_pred             EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh-------hhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCC
Q 027824           61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH-------ATFQNVGRWLRELREHTD----PNIIVMLIGNKTD  129 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D  129 (218)
                      ...+.++|++|+...+.-|..++.+++++|||+++++-       .....+.+-+..+.....    .+.|+||++||.|
T Consensus       235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D  314 (389)
T PF00503_consen  235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID  314 (389)
T ss_dssp             TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred             ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence            35789999999999999999999999999999998742       122334333344333322    5789999999999


Q ss_pred             CC------CC----------c--ccCHHHHHHHHHH------------cCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824          130 LR------HL----------V--AVSTEDGKAFAEQ------------ESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus       130 l~------~~----------~--~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (218)
                      +-      .+          -  .-+.+.+..+...            ..+.+..|+|.+..++..+|+.+.+-
T Consensus       315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            82      11          1  1234555555443            11246688999989999999887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.15  E-value=2.9e-05  Score=60.30  Aligned_cols=88  Identities=15%  Similarity=0.045  Sum_probs=65.1

Q ss_pred             hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824           82 YYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA  160 (218)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (218)
                      -..++|-+++++++.+|+ +...+..++-.+..   .++..++++||+|+.++.+....+........+.+++.+|++++
T Consensus        76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~  152 (301)
T COG1162          76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNG  152 (301)
T ss_pred             cccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCc
Confidence            344677788888888875 55555556555554   56777888999999775554434456667778999999999999


Q ss_pred             CCHHHHHHHHHH
Q 027824          161 TNVENAFTEVLT  172 (218)
Q Consensus       161 ~~v~~~~~~i~~  172 (218)
                      .+++++...+..
T Consensus       153 ~~~~~l~~~l~~  164 (301)
T COG1162         153 DGLEELAELLAG  164 (301)
T ss_pred             ccHHHHHHHhcC
Confidence            999998877654

>PRK13796 GTPase YqeH; Provisional

Probab=98.15  E-value=3.8e-06  Score=68.12  Aligned_cols=56  Identities=23%  Similarity=0.386  Sum_probs=37.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCC----CCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNL----ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      .++.++|.+|+|||||+|+|+......    ...+..|++.....+.+++.   ..++||||.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence            479999999999999999998643111    11123344444555555443   369999996

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.12  E-value=5.2e-06  Score=63.64  Aligned_cols=58  Identities=22%  Similarity=0.199  Sum_probs=36.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCC------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhh
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLE------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY   75 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   75 (218)
                      -.++++|++|+|||||+|+|.+......      ......++.....+.+.+ .   .|+||||-..+
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~-~---~liDtPG~~~~  184 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG-G---LIADTPGFNEF  184 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC-c---EEEeCCCcccc
Confidence            3688999999999999999987643211      111111233333344432 2   59999996544

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.11  E-value=7.6e-06  Score=66.29  Aligned_cols=57  Identities=21%  Similarity=0.364  Sum_probs=37.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCC----CCcccceeEEEEEEEEECCeEEEEEEEeCCCch
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNL----ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE   73 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~   73 (218)
                      .+++++|.+|+|||||+|++++.....    ......+++.....+.+++.   +.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence            489999999999999999998753210    11122334444444544332   4699999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.09  E-value=1.2e-05  Score=59.71  Aligned_cols=121  Identities=18%  Similarity=0.208  Sum_probs=78.2

Q ss_pred             eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh----------hHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 027824           60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA----------TFQNVGRWLRELREHTD-PNIIVMLIGNKT  128 (218)
Q Consensus        60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~  128 (218)
                      ..+.+.+.|.+|+...+.-|..++.++-.++|.+.++.-+          .++.-..++..+..+.= .+.++|+..||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            3456778999999888888888888877777766665321          11222223333322211 578899999999


Q ss_pred             CCCCC----------------cccCHHHHHHHHHHc----C------CeEEEEccCCCCCHHHHHHHHHHHHHHHHhh
Q 027824          129 DLRHL----------------VAVSTEDGKAFAEQE----S------LYFMETSALDATNVENAFTEVLTQIYKIVSK  180 (218)
Q Consensus       129 Dl~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~~  180 (218)
                      |+.++                .+.+.+.+++|..+.    |      +.-.++.|.+-+|+.-+|..+-..+++..-+
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~Lk  354 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK  354 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhH
Confidence            98532                223444566665542    1      1234577888899999999998888776543

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.08  E-value=1.9e-05  Score=56.93  Aligned_cols=136  Identities=18%  Similarity=0.252  Sum_probs=69.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeC-CCc---------------------
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT-AGQ---------------------   72 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~-~G~---------------------   72 (218)
                      +|++.|++|+|||||+++++...... ..+..|  +....+.-++..+-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987643211 112222  22233333444455555555 331                     


Q ss_pred             -hhhhhh----hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCCcccCHHHHHHHHH
Q 027824           73 -ERYRAI----TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT-DLRHLVAVSTEDGKAFAE  146 (218)
Q Consensus        73 -~~~~~~----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~  146 (218)
                       +.+...    ....+..+|  ++++|=--+..+. ...|.+.+......+.|+|.++.+. +.        ....++..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence             111111    111224555  6777754321111 1234455555555778888888776 32        12555666


Q ss_pred             HcCCeEEEEccCCCCCHH
Q 027824          147 QESLYFMETSALDATNVE  164 (218)
Q Consensus       147 ~~~~~~~~~Sa~~~~~v~  164 (218)
                      ..++.+++++..+.+.+.
T Consensus       147 ~~~~~i~~vt~~NRd~l~  164 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDALP  164 (168)
T ss_dssp             TTTSEEEE--TTTCCCHH
T ss_pred             CCCcEEEEeChhHHhhHh
Confidence            678899999887766553

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.03  E-value=2.5e-05  Score=59.57  Aligned_cols=114  Identities=23%  Similarity=0.381  Sum_probs=70.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCc----ccceeEEEEEEEEECCeEEEEEEEeCCCc-------hhhhhh---
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESK----STIGVEFATRSLRIDNKVVKAQIWDTAGQ-------ERYRAI---   78 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~~~~---   78 (218)
                      .++|+.+|..|.|||||+++|++-.+.....    ++.........+.-.+..+++.|.||.|-       +.|..+   
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy  121 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY  121 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence            5899999999999999999999987754332    44444444444444566788999999991       122111   


Q ss_pred             ----hhhhh---------------cCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           79 ----TSAYY---------------RGAVGALLVYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        79 ----~~~~~---------------~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                          ..+|+               ...++.+|.++.+. .++..+.- .++.+.    ..+-+|.++-|.|..
T Consensus       122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDti  189 (406)
T KOG3859|consen  122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTI  189 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhh
Confidence                11111               24567777777763 44444322 233332    334467777788864

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.00  E-value=1.5e-05  Score=62.62  Aligned_cols=60  Identities=22%  Similarity=0.233  Sum_probs=38.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCc------ccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESK------STIGVEFATRSLRIDNKVVKAQIWDTAGQERYR   76 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   76 (218)
                      ..++++|++|+|||||+|.|++........      ....++.....+.+.+..   .++|+||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence            469999999999999999998865422111      111123333444444322   499999986553

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.00  E-value=7.3e-05  Score=61.45  Aligned_cols=134  Identities=11%  Similarity=0.064  Sum_probs=71.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC------cC---CCCC------------cccceeEEEEEEEEEC-------------
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN------EF---NLES------------KSTIGVEFATRSLRID-------------   58 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~------~~---~~~~------------~~t~~~~~~~~~~~~~-------------   58 (218)
                      ...|+++|.+|+||||++.+|...      ..   ....            ....+.++.......+             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            467999999999999999987521      10   0000            0011222221110000             


Q ss_pred             CeEEEEEEEeCCCchhhhhhh----hhh--hcCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           59 NKVVKAQIWDTAGQERYRAIT----SAY--YRGAVGALLVYDVTRHAT-FQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        59 ~~~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      ...+.+.|+||+|........    ..+  ....+-+++|+|++-+.. .+.    ...+...   -.+--+|+||.|..
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~---~~~~g~IlTKlD~~  252 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS---VDVGSVIITKLDGH  252 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc---cCCcEEEEECccCC
Confidence            124578999999965332211    111  235678999999875532 222    2333221   13467889999974


Q ss_pred             CCcccCHHHHHHHHHHcCCeEEEEcc
Q 027824          132 HLVAVSTEDGKAFAEQESLYFMETSA  157 (218)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (218)
                      ..-    =.+.......+.|+.+++.
T Consensus       253 arg----G~aLs~~~~t~~PI~fig~  274 (429)
T TIGR01425       253 AKG----GGALSAVAATKSPIIFIGT  274 (429)
T ss_pred             CCc----cHHhhhHHHHCCCeEEEcC
Confidence            311    1133444556777655443

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.96  E-value=1.7e-05  Score=62.58  Aligned_cols=57  Identities=26%  Similarity=0.233  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCc-c-----cceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESK-S-----TIGVEFATRSLRIDNKVVKAQIWDTAGQER   74 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~-~-----t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   74 (218)
                      .++++|++|+|||||+|.|++........ +     ...++.....+.+++..   .++||||...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~---~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGG---LLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCc---EEEECCCcCc
Confidence            58999999999999999998765322111 0     00122233333444332   5899999653

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.96  E-value=0.00037  Score=58.62  Aligned_cols=157  Identities=14%  Similarity=0.153  Sum_probs=80.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCCCC---Cccc--------------------ceeEEEEEEEE------E-CCeE
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLE---SKST--------------------IGVEFATRSLR------I-DNKV   61 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~---~~~t--------------------~~~~~~~~~~~------~-~~~~   61 (218)
                      ..-.|+|+|+.|+||||++..|........   ....                    .++.+....-.      + ....
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD  428 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence            345789999999999999988764211100   0000                    11111100000      0 0123


Q ss_pred             EEEEEEeCCCchhhhhhhh----h--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824           62 VKAQIWDTAGQERYRAITS----A--YYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA  135 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~----~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  135 (218)
                      +.+.|+||+|.........    .  .... ...++|++.+..  ...+...+..+..    ..+.-+|+||.|...   
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~-~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~---  498 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQ-VTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG---  498 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhc-CCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence            5789999999643322111    0  1112 245677777642  3333333333332    235679999999733   


Q ss_pred             cCHHHHHHHHHHcCCeEEEEccCCC--CCHHHH-HHHHHHHHHHHHh
Q 027824          136 VSTEDGKAFAEQESLYFMETSALDA--TNVENA-FTEVLTQIYKIVS  179 (218)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa~~~--~~v~~~-~~~i~~~i~~~~~  179 (218)
                       ..-.+.......+.++..++.-.+  +++... -..+++.+...+.
T Consensus       499 -~lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~~  544 (559)
T PRK12727        499 -RFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDLRR  544 (559)
T ss_pred             -chhHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHHHh
Confidence             223466667778888776665433  233321 3345555555443

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.93  E-value=8.7e-05  Score=53.79  Aligned_cols=82  Identities=17%  Similarity=0.024  Sum_probs=45.4

Q ss_pred             EEEEEEeCCCchhhh----hhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824           62 VKAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA  135 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  135 (218)
                      ..+.|+|++|.....    .....+.  ...+.+++|+|......   ...+...+....  + ..-+|.||.|..... 
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~~-  155 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDARG-  155 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCCc-
Confidence            457889999964221    1111121  34899999999865432   222334443222  2 356777999975422 


Q ss_pred             cCHHHHHHHHHHcCCeEE
Q 027824          136 VSTEDGKAFAEQESLYFM  153 (218)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~  153 (218)
                         -.+...+...++|+.
T Consensus       156 ---g~~~~~~~~~~~p~~  170 (173)
T cd03115         156 ---GAALSIRAVTGKPIK  170 (173)
T ss_pred             ---chhhhhHHHHCcCeE
Confidence               223345666676654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK13695 putative NTPase; Provisional

Probab=97.93  E-value=0.00051  Score=49.83  Aligned_cols=23  Identities=30%  Similarity=0.592  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~   36 (218)
                      ++|++.|.+|+|||||+..+.+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999986543

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.92  E-value=0.0003  Score=55.95  Aligned_cols=97  Identities=16%  Similarity=0.124  Sum_probs=56.6

Q ss_pred             EEEEEEeCCCchhhhhhhhhhhc--------CCcEEEEEEECCChhh-HHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           62 VKAQIWDTAGQERYRAITSAYYR--------GAVGALLVYDVTRHAT-FQNV-GRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s-~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      +...++++.|...-..+...++.        ..|+++-|+|+.+-.. ...+ .....++...      =+|++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence            45678888886555444333322        3577899999875432 2212 2233334332      28999999997


Q ss_pred             CCcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHH
Q 027824          132 HLVAVSTEDGKAFAEQE--SLYFMETSALDATNVENAF  167 (218)
Q Consensus       132 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~  167 (218)
                      .+..  .+..++..++.  .++++.++.. ..+..+++
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll  193 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSYG-DVDLAELL  193 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEcccc-CCCHHHhh
Confidence            7553  34556666664  4678888773 34444433

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=6.9e-05  Score=61.72  Aligned_cols=130  Identities=21%  Similarity=0.257  Sum_probs=83.9

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCc------------CCCCCc--ccceeEEEEEEEEE----------------CC
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE------------FNLESK--STIGVEFATRSLRI----------------DN   59 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~------------~~~~~~--~t~~~~~~~~~~~~----------------~~   59 (218)
                      ..+..++-++.+...|||||-..|....            |.....  ..-++++...-+.+                ++
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            3456788899999999999999875432            111111  11222322222211                34


Q ss_pred             eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-CcccCH
Q 027824           60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH-LVAVST  138 (218)
Q Consensus        60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~  138 (218)
                      ..+-+.++|.||+-+|.+-..+.++-.|+.++|+|..++--.+.-.-+.+.+..    .+.-++++||.|..- +.++..
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~  171 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQ  171 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCH
Confidence            567899999999999999999999999999999999876544432233333432    334578999999632 344554


Q ss_pred             HHHHH
Q 027824          139 EDGKA  143 (218)
Q Consensus       139 ~~~~~  143 (218)
                      ++.-+
T Consensus       172 EeLyq  176 (842)
T KOG0469|consen  172 EELYQ  176 (842)
T ss_pred             HHHHH
Confidence            55433

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=0.00019  Score=58.12  Aligned_cols=143  Identities=17%  Similarity=0.099  Sum_probs=73.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCC---CCcccceeEEE------------------EEEEEE---------CCeEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL---ESKSTIGVEFA------------------TRSLRI---------DNKVV   62 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~------------------~~~~~~---------~~~~~   62 (218)
                      .-.++++|++|+||||++.+|.......   ......+.+.+                  ......         .....
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            3578899999999999999986542111   11111111111                  000100         01234


Q ss_pred             EEEEEeCCCchhhhhhhh---hhh---cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCC
Q 027824           63 KAQIWDTAGQERYRAITS---AYY---RGAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPN--IIVMLIGNKTDLRHL  133 (218)
Q Consensus        63 ~~~i~D~~G~~~~~~~~~---~~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~  133 (218)
                      .+.++||+|.........   ..+   ....-.++|++++.. +.+..+..-+..+.......  -+-=+|+||.|-...
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~  296 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN  296 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence            678999999654332211   112   223456889998764 34443322222221111000  123577899997442


Q ss_pred             cccCHHHHHHHHHHcCCeEEEEccCC
Q 027824          134 VAVSTEDGKAFAEQESLYFMETSALD  159 (218)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (218)
                          .=.+..++...+.++..++.-.
T Consensus       297 ----~G~~l~~~~~~~lPi~yvt~Gq  318 (374)
T PRK14722        297 ----LGGVLDTVIRYKLPVHYVSTGQ  318 (374)
T ss_pred             ----ccHHHHHHHHHCcCeEEEecCC
Confidence                2235666777788876666543

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.88  E-value=7.1e-05  Score=43.07  Aligned_cols=45  Identities=22%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             cCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027824           84 RGAVGALLVYDVTR--HATFQNVGRWLRELREHTDPNIIVMLIGNKTD  129 (218)
Q Consensus        84 ~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  129 (218)
                      .-.++++|++|++.  +.+++.-..++..+.... .+.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            44688999999985  467777777788887776 5899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.88  E-value=0.00034  Score=55.68  Aligned_cols=95  Identities=9%  Similarity=0.059  Sum_probs=53.6

Q ss_pred             EEEEEEeCCCchhhhhhhhhhhc--------CCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           62 VKAQIWDTAGQERYRAITSAYYR--------GAVGALLVYDVTRHAT-FQNVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      ....++++.|..+...+...++.        ..++++.|+|+.+-.. .+........+...      =+|++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence            44578899997665555544422        2478999999875322 11111122333332      289999999876


Q ss_pred             CcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHH
Q 027824          133 LVAVSTEDGKAFAEQE--SLYFMETSALDATNVENAF  167 (218)
Q Consensus       133 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~  167 (218)
                      +.    +..++..+..  .++++.++ ........+|
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            32    3455565554  45666544 3334444444

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.83  E-value=0.0018  Score=46.24  Aligned_cols=142  Identities=8%  Similarity=0.016  Sum_probs=96.0

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA   86 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   86 (218)
                      ..|..+...|+++|..+.++..|...+....-      +...++..  .  ..  +       |=-.+...+    -...
T Consensus         9 klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~~~l~Vh~--a--~s--L-------PLp~e~~~l----RprI   65 (176)
T PF11111_consen    9 KLPELNTATILLVGTEEALLQQLAEAMLEEDK------EFKLKVHL--A--KS--L-------PLPSENNNL----RPRI   65 (176)
T ss_pred             cCCCcceeEEEEecccHHHHHHHHHHHHhhcc------ceeEEEEE--e--cc--C-------CCcccccCC----Ccee
Confidence            45667789999999999999999999976221      11111111  1  00  0       000111111    2357


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824           87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      |.++|++|.+...+++.++.-+..+....-. -.+.++++-....+...+...+..+++..++++++.+.-...++...+
T Consensus        66 DlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~l  144 (176)
T PF11111_consen   66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSL  144 (176)
T ss_pred             EEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHH
Confidence            9999999999999999887766666443322 236677777776666778888999999999999999988887766555


Q ss_pred             HHHHHH
Q 027824          167 FTEVLT  172 (218)
Q Consensus       167 ~~~i~~  172 (218)
                      -+.|++
T Consensus       145 AqRLL~  150 (176)
T PF11111_consen  145 AQRLLR  150 (176)
T ss_pred             HHHHHH
Confidence            555544

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.78  E-value=0.00052  Score=50.81  Aligned_cols=135  Identities=19%  Similarity=0.120  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCC---------------------CcccceeEEEEEEEE-------------ECC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLE---------------------SKSTIGVEFATRSLR-------------IDN   59 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~-------------~~~   59 (218)
                      ..|+++|++|+||||.+-+|........                     +....++.+......             ...
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            4689999999999999988754221110                     001123332221100             001


Q ss_pred             eEEEEEEEeCCCchhhhhh----hhhhh--cCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           60 KVVKAQIWDTAGQERYRAI----TSAYY--RGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        60 ~~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      .++.+.++||+|.......    ...++  ...+-+++|++++... .++.+.    .+.....   +--+|.||.|...
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~----~~~~~~~---~~~lIlTKlDet~  154 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL----AFYEAFG---IDGLILTKLDETA  154 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH----HHHHHSS---TCEEEEESTTSSS
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH----HHhhccc---CceEEEEeecCCC
Confidence            1245789999996533221    11111  2567799999998653 333222    2222211   2257799999744


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEEccCC
Q 027824          133 LVAVSTEDGKAFAEQESLYFMETSALD  159 (218)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (218)
                      .    .-.+..++...+.|+-.++.-.
T Consensus       155 ~----~G~~l~~~~~~~~Pi~~it~Gq  177 (196)
T PF00448_consen  155 R----LGALLSLAYESGLPISYITTGQ  177 (196)
T ss_dssp             T----THHHHHHHHHHTSEEEEEESSS
T ss_pred             C----cccceeHHHHhCCCeEEEECCC
Confidence            2    2346667777888877666543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.74  E-value=0.00012  Score=51.65  Aligned_cols=58  Identities=16%  Similarity=0.075  Sum_probs=35.5

Q ss_pred             EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027824           61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD  129 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  129 (218)
                      .+.+.|+|++|.....   ..++..+|-+|++....-.+...-+.  ...+...      -++++||+|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k--~~~~~~~------~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK--AGIMEIA------DIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh--hhHhhhc------CEEEEeCCC
Confidence            3568899998864222   34778899888888877332222111  1222221      389999987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.74  E-value=3.3e-05  Score=61.71  Aligned_cols=62  Identities=21%  Similarity=0.377  Sum_probs=48.1

Q ss_pred             CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus         7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      ...-...+++.|+|-|++||||+||.|......... .+.|++..-..+.++.   .+.|.|.||.
T Consensus       246 ~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  246 KGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             ccccCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence            344567899999999999999999999988875544 5556666666666554   5789999993

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.73  E-value=7.7e-05  Score=54.38  Aligned_cols=81  Identities=15%  Similarity=0.085  Sum_probs=43.3

Q ss_pred             EEEEEEEeCCCchhhhhhh--h---hhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824           61 VVKAQIWDTAGQERYRAIT--S---AYYRGAVGALLVYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLRHLV  134 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~~~--~---~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  134 (218)
                      .....+++++|......+.  .   ...-..+.+|.|+|+.+-.....+.. +...+....      ++++||+|+..+.
T Consensus        84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~  157 (178)
T PF02492_consen   84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE  157 (178)
T ss_dssp             C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH
T ss_pred             CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh
Confidence            3456788888855444441  0   11224678999999976433333322 334443322      8999999986543


Q ss_pred             ccCHHHHHHHHHHc
Q 027824          135 AVSTEDGKAFAEQE  148 (218)
Q Consensus       135 ~~~~~~~~~~~~~~  148 (218)
                       ...+..++..++.
T Consensus       158 -~~i~~~~~~ir~l  170 (178)
T PF02492_consen  158 -QKIERVREMIREL  170 (178)
T ss_dssp             ---HHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHH
Confidence             1223455555553

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.71  E-value=0.00056  Score=54.63  Aligned_cols=151  Identities=19%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCC----------------CCCcccc-------eeEEEEEEEEE----------
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN----------------LESKSTI-------GVEFATRSLRI----------   57 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~----------------~~~~~t~-------~~~~~~~~~~~----------   57 (218)
                      =..++|+++|+..+|||||+-.|+.+...                .+.-.|.       |++..-..+..          
T Consensus       131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW  210 (641)
T KOG0463|consen  131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW  210 (641)
T ss_pred             ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence            34689999999999999999766554321                1111111       11111111110          


Q ss_pred             ----CCeEEEEEEEeCCCchhhhhhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           58 ----DNKVVKAQIWDTAGQERYRAITSAYY--RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        58 ----~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                          .+..-.+.++|..|++.|-...---+  .-.|...+++-++.+- +-...+.+....   ...+|+++|++|+|+-
T Consensus       211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLAL---aL~VPVfvVVTKIDMC  286 (641)
T KOG0463|consen  211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLAL---ALHVPVFVVVTKIDMC  286 (641)
T ss_pred             eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhh---hhcCcEEEEEEeeccC
Confidence                01112478999999998865432211  2356666776665431 000011122211   1467899999999985


Q ss_pred             CCcccCHHHHHH---HHH--------------------------HcCCeEEEEccCCCCCHHHH
Q 027824          132 HLVAVSTEDGKA---FAE--------------------------QESLYFMETSALDATNVENA  166 (218)
Q Consensus       132 ~~~~~~~~~~~~---~~~--------------------------~~~~~~~~~Sa~~~~~v~~~  166 (218)
                      ....+ .+.++-   +.+                          +.-+++|.+|..+|.+++-+
T Consensus       287 PANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL  349 (641)
T KOG0463|consen  287 PANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL  349 (641)
T ss_pred             cHHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence            43211 111111   111                          12357899999999997644

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.70  E-value=0.00038  Score=45.84  Aligned_cols=82  Identities=16%  Similarity=0.171  Sum_probs=49.0

Q ss_pred             EEEEc-CCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824           16 LVLIG-DSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        16 i~l~G-~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      |.+.| ..|+||||+...+...... ...++.-.+.       +.. +.+.++|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~-------d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDL-------DPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeC-------CCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            55666 5689999998776443221 1112221221       111 567899999864333  2366777999999988


Q ss_pred             CCChhhHHHHHHHHH
Q 027824           95 VTRHATFQNVGRWLR  109 (218)
Q Consensus        95 ~~~~~s~~~~~~~~~  109 (218)
                      .+ ..++..+..++.
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 445555555444

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>TIGR00959 ffh signal recognition particle protein

Probab=97.70  E-value=0.00023  Score=58.77  Aligned_cols=86  Identities=15%  Similarity=0.021  Sum_probs=49.2

Q ss_pred             EEEEEEeCCCchhhhhh----hhh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824           62 VKAQIWDTAGQERYRAI----TSA--YYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA  135 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  135 (218)
                      +.+.|+||+|.......    ...  ..-..+.+++|+|...+.   ....+...+....  + ..-+|.||.|-.... 
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~~~-  255 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDARG-  255 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence            46899999995432211    111  123578899999987543   2333334443222  1 246779999953311 


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcc
Q 027824          136 VSTEDGKAFAEQESLYFMETSA  157 (218)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa  157 (218)
                         -.+...+...++|+.++..
T Consensus       256 ---G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       256 ---GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ---cHHHHHHHHHCcCEEEEeC
Confidence               1256667777888766555

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=9.7e-05  Score=59.23  Aligned_cols=157  Identities=17%  Similarity=0.110  Sum_probs=93.9

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcC-------------------------------CCCCcccceeEEEEEEEEE
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF-------------------------------NLESKSTIGVEFATRSLRI   57 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~   57 (218)
                      +...-++++++|+..+||||+-..++....                               .++..  .+-+.......+
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~--kgKtvEvGrA~F  152 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERD--KGKTVEVGRAYF  152 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhh--ccceeeeeeEEE
Confidence            345568999999999999998876543210                               00111  111222222223


Q ss_pred             CCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh---hHHHH-HH-HHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           58 DNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA---TFQNV-GR-WLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        58 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~-~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      ....-.+.+.|+||+..|-.....-..++|.-++|+++...+   .|+.- +. -...+.... .-...|+++||+|-+.
T Consensus       153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPt  231 (501)
T KOG0459|consen  153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPT  231 (501)
T ss_pred             EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCc
Confidence            333446899999999988877777778899999999885432   23221 00 112222222 3346899999999753


Q ss_pred             C--cccCHHH----HHHHHHHc------CCeEEEEccCCCCCHHHHHH
Q 027824          133 L--VAVSTED----GKAFAEQE------SLYFMETSALDATNVENAFT  168 (218)
Q Consensus       133 ~--~~~~~~~----~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      .  ....+++    ...+.+..      ...|+.+|..+|.++++...
T Consensus       232 vnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  232 VNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            2  2222333    23334432      34599999999999987653

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.67  E-value=0.00021  Score=49.86  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=61.7

Q ss_pred             EEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECC
Q 027824           17 VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT   96 (218)
Q Consensus        17 ~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   96 (218)
                      +.-|..|+|||++.-.+...-. .....+.-.+....   .....+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADLG---LANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCC---CCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            4567889999999776533211 11111111111110   01111678999999853  333356788899999999986


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824           97 RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        97 ~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  131 (218)
                      . .++..+...+..+.... ...++.+|+|+.+..
T Consensus        78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence            3 44544444444444332 345788999999753

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.64  E-value=0.00045  Score=57.12  Aligned_cols=86  Identities=16%  Similarity=0.015  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCchhhhh----hhhhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824           62 VKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA  135 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  135 (218)
                      +.+.|+||+|......    ....+  .-..+.+++|+|...+.   ........+....  + ..-+|.||.|-.... 
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~rg-  256 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDARG-  256 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence            5689999999542211    11111  12567789999987542   2222233333211  1 235677999963311 


Q ss_pred             cCHHHHHHHHHHcCCeEEEEcc
Q 027824          136 VSTEDGKAFAEQESLYFMETSA  157 (218)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa  157 (218)
                         =.+.......++|+.++..
T Consensus       257 ---G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        257 ---GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ---cHHHHHHHHHCcCEEEEeC
Confidence               1255666677888766555

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.64  E-value=0.00074  Score=55.59  Aligned_cols=135  Identities=16%  Similarity=0.082  Sum_probs=71.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCC---Cccc--------------------ceeEEEEEEEE-------ECCeEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLE---SKST--------------------IGVEFATRSLR-------IDNKVV   62 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~---~~~t--------------------~~~~~~~~~~~-------~~~~~~   62 (218)
                      .-.|+++|+.|+||||++..|.+......   ....                    .++.+....-.       ..-...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            45899999999999999998765321000   0000                    01111000000       001123


Q ss_pred             EEEEEeCCCchhhhh----hhhhhh--cCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824           63 KAQIWDTAGQERYRA----ITSAYY--RGAVGALLVYDVTR-HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA  135 (218)
Q Consensus        63 ~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  135 (218)
                      .+.++||+|......    ....+.  ....-.++|+|++. ...+.   .++..+..    --+-=+|+||.|-...  
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~----~~~~~~I~TKlDEt~~--  341 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQG----HGIHGCIITKVDEAAS--  341 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcC----CCCCEEEEEeeeCCCC--
Confidence            578999999543221    122221  22345788999884 33333   33333322    1234688999997442  


Q ss_pred             cCHHHHHHHHHHcCCeEEEEccC
Q 027824          136 VSTEDGKAFAEQESLYFMETSAL  158 (218)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa~  158 (218)
                        .=.+..++...+.++..++.-
T Consensus       342 --~G~~l~~~~~~~lPi~yvt~G  362 (420)
T PRK14721        342 --LGIALDAVIRRKLVLHYVTNG  362 (420)
T ss_pred             --ccHHHHHHHHhCCCEEEEECC
Confidence              223566677788887666643

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.64  E-value=0.00056  Score=47.39  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~   38 (218)
                      .--+++.|++|+|||+|++.+.....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            34689999999999999999987554

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.62  E-value=0.00048  Score=57.09  Aligned_cols=137  Identities=18%  Similarity=0.072  Sum_probs=72.6

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCC----------CCCcc-----------cceeEEEEEEEEE-----------C
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN----------LESKS-----------TIGVEFATRSLRI-----------D   58 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~----------~~~~~-----------t~~~~~~~~~~~~-----------~   58 (218)
                      ..+..|+++|.+|+||||++..|......          ..+.+           ..+..+.......           .
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            34678999999999999999877432110          00000           0112221110000           0


Q ss_pred             CeEEEEEEEeCCCchhhhhhh----h--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           59 NKVVKAQIWDTAGQERYRAIT----S--AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        59 ~~~~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      .....+.|+||+|........    .  .....+|.+++|+|++...   ........+....   ...-+|+||.|...
T Consensus       173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a  246 (437)
T PRK00771        173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA  246 (437)
T ss_pred             hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC
Confidence            011367999999965432211    1  1133678899999987652   1112223332211   12367789999643


Q ss_pred             CcccCHHHHHHHHHHcCCeEEEEcc
Q 027824          133 LVAVSTEDGKAFAEQESLYFMETSA  157 (218)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (218)
                      .-    =.+.......+.|+.+++.
T Consensus       247 ~~----G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        247 KG----GGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             cc----cHHHHHHHHHCcCEEEEec
Confidence            11    1245556667888666554

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.0015  Score=53.12  Aligned_cols=136  Identities=16%  Similarity=0.131  Sum_probs=73.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCC---------CCc------------ccceeEEEEEEE--E----E---C-CeE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL---------ESK------------STIGVEFATRSL--R----I---D-NKV   61 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~---------~~~------------~t~~~~~~~~~~--~----~---~-~~~   61 (218)
                      ...|+++|+.|+||||++..|.......         ...            ...++.+....-  .    +   . ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            3689999999999999999885421100         000            011111111000  0    0   0 113


Q ss_pred             EEEEEEeCCCchhhhh----hhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824           62 VKAQIWDTAGQERYRA----ITSAYY--RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA  135 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  135 (218)
                      +.+.|+||+|......    -...++  ...+.+++|+|++-..  ..+......+...    .+--+|+||.|-...  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~k--  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETAS--  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCCC--
Confidence            5678999999643221    112222  2456788899876332  2223334444321    224688999997542  


Q ss_pred             cCHHHHHHHHHHcCCeEEEEccC
Q 027824          136 VSTEDGKAFAEQESLYFMETSAL  158 (218)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa~  158 (218)
                        .=.+..++...++|+..++.-
T Consensus       393 --~G~iLni~~~~~lPIsyit~G  413 (436)
T PRK11889        393 --SGELLKIPAVSSAPIVLMTDG  413 (436)
T ss_pred             --ccHHHHHHHHHCcCEEEEeCC
Confidence              123556677778887666553

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.58  E-value=0.00099  Score=42.81  Aligned_cols=69  Identities=19%  Similarity=0.158  Sum_probs=44.8

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh-hhhhhcCCcEEEEEEE
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYD   94 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   94 (218)
                      +++.|..|+||||+...+........+ ...-         ++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~-~v~~---------~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK-RVLL---------ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC-eEEE---------EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999887654322111 1111         11    5689999986433321 2445667898999988


Q ss_pred             CCCh
Q 027824           95 VTRH   98 (218)
Q Consensus        95 ~~~~   98 (218)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7653

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.52  E-value=0.0012  Score=54.69  Aligned_cols=88  Identities=15%  Similarity=0.079  Sum_probs=50.2

Q ss_pred             EEEEEEeCCCchhhh----hhhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824           62 VKAQIWDTAGQERYR----AITSAYYR---GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV  134 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  134 (218)
                      +.+.|+|++|.....    .....++.   ...-+++|++.+-..  ..+...+..+...   + +--+|.||.|-... 
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~~-  372 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETSS-  372 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEeccccccc-
Confidence            567999999964332    12223333   234567888886432  2222223333221   1 23688999997432 


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEccCC
Q 027824          135 AVSTEDGKAFAEQESLYFMETSALD  159 (218)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (218)
                         .-.+..++...++++..++.-.
T Consensus       373 ---~G~i~~~~~~~~lPv~yit~Gq  394 (424)
T PRK05703        373 ---LGSILSLLIESGLPISYLTNGQ  394 (424)
T ss_pred             ---ccHHHHHHHHHCCCEEEEeCCC
Confidence               2246777788899877666544

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=97.50  E-value=0.0014  Score=49.89  Aligned_cols=120  Identities=19%  Similarity=0.212  Sum_probs=78.0

Q ss_pred             eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh-------hhHHHHHHHHHHHHhhcC----CCCcEEEEEeCC
Q 027824           60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH-------ATFQNVGRWLRELREHTD----PNIIVMLIGNKT  128 (218)
Q Consensus        60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~  128 (218)
                      ..+.++.+|.+|+.+.+.-|..++..+-++|||+..+.-       .+-+.+++-+..+...=.    ..+.+|+.+||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            346789999999999999999999999999999988742       122334443333322211    456799999999


Q ss_pred             CCCCC----------------------------cccC--HHHHHHHHHH-------------cCCeEEEEccCCCCCHHH
Q 027824          129 DLRHL----------------------------VAVS--TEDGKAFAEQ-------------ESLYFMETSALDATNVEN  165 (218)
Q Consensus       129 Dl~~~----------------------------~~~~--~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~  165 (218)
                      |+-.+                            ...+  ...++-+.+.             +-+.+-++.|.+-+++..
T Consensus       280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr  359 (379)
T KOG0099|consen  280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  359 (379)
T ss_pred             HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence            98310                            0001  1111222221             124456788899999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027824          166 AFTEVLTQIYKIVS  179 (218)
Q Consensus       166 ~~~~i~~~i~~~~~  179 (218)
                      +|+..-.-+.+..-
T Consensus       360 VFnDcrdiIqr~hl  373 (379)
T KOG0099|consen  360 VFNDCRDIIQRMHL  373 (379)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988776666543

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.49  E-value=0.00088  Score=49.34  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=59.9

Q ss_pred             EEEEEeCCCchhhhh---hhhhhh---c---CCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824           63 KAQIWDTAGQERYRA---ITSAYY---R---GAVGALLVYDVTR-HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH  132 (218)
Q Consensus        63 ~~~i~D~~G~~~~~~---~~~~~~---~---~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  132 (218)
                      .+.++|+||+-+...   ..+.+.   +   -.-+++|+++..= -++..-+...+..+.....-..|-|=|++|.|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            467999999754322   222222   1   1224556666431 12333344445555554446789999999999854


Q ss_pred             CcccCHHH------------------------HHHH-------HHHcC-CeEEEEccCCCCCHHHHHHHHHHHH
Q 027824          133 LVAVSTED------------------------GKAF-------AEQES-LYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       133 ~~~~~~~~------------------------~~~~-------~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~i  174 (218)
                      +.  +.++                        ..++       ...++ +.|+.....+.+.++.++..|-..+
T Consensus       179 ~~--~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai  250 (273)
T KOG1534|consen  179 DK--NKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI  250 (273)
T ss_pred             hh--hHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence            31  1111                        1111       11223 3577778888888888887775544

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.49  E-value=0.0018  Score=52.44  Aligned_cols=138  Identities=19%  Similarity=0.155  Sum_probs=71.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcCcCC---------CCCc------------ccceeEEEEEEE--EE-------C-Ce
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFN---------LESK------------STIGVEFATRSL--RI-------D-NK   60 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~~~~---------~~~~------------~t~~~~~~~~~~--~~-------~-~~   60 (218)
                      ..-.|+++|+.|+||||++.++......         ....            ...+..+....-  .+       . ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            3557899999999999999987542110         0000            001111111000  00       0 02


Q ss_pred             EEEEEEEeCCCchhhhhh----hhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824           61 VVKAQIWDTAGQERYRAI----TSAYYR--GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV  134 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  134 (218)
                      .+.+.|+||+|.......    ...+..  ..+.+++|.+++.  ....+...+..+.    .-.+--+|+||.|-... 
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~----~l~i~glI~TKLDET~~-  357 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA----EIPIDGFIITKMDETTR-  357 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC----cCCCCEEEEEcccCCCC-
Confidence            357799999997433221    122222  3456667776632  2222322233222    11234678999997432 


Q ss_pred             ccCHHHHHHHHHHcCCeEEEEccCC
Q 027824          135 AVSTEDGKAFAEQESLYFMETSALD  159 (218)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (218)
                         .=.+..++...+.|+..++.-.
T Consensus       358 ---~G~~Lsv~~~tglPIsylt~GQ  379 (407)
T PRK12726        358 ---IGDLYTVMQETNLPVLYMTDGQ  379 (407)
T ss_pred             ---ccHHHHHHHHHCCCEEEEecCC
Confidence               1235566777888877666543

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.47  E-value=0.00012  Score=50.22  Aligned_cols=24  Identities=33%  Similarity=0.578  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      --+++.|++|+|||++++++....
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHh
Confidence            347899999999999999998754

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.46  E-value=0.0028  Score=51.03  Aligned_cols=99  Identities=17%  Similarity=0.157  Sum_probs=55.0

Q ss_pred             EEEEEEeCCCchhhhhhhhhhh-------cCCcEEEEEEECCChhh--H-------H-------------HHHH-HHHHH
Q 027824           62 VKAQIWDTAGQERYRAITSAYY-------RGAVGALLVYDVTRHAT--F-------Q-------------NVGR-WLREL  111 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~-------~-------------~~~~-~~~~i  111 (218)
                      +...++++.|......+...+.       -..|++|-|+|+.+-..  +       .             .+.. +...+
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            4567889999766555544431       14578999999874211  0       0             0111 12333


Q ss_pred             HhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cC--CeEEEEccCCCCCHHHHHHH
Q 027824          112 REHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ES--LYFMETSALDATNVENAFTE  169 (218)
Q Consensus       112 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~--~~~~~~Sa~~~~~v~~~~~~  169 (218)
                      ...      =+|++||+|+..+.++  +..++..+. ++  ++++++. ........+|..
T Consensus       173 ~~A------D~IvlnK~Dl~~~~~l--~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~~  224 (341)
T TIGR02475       173 ACA------DLVILNKADLLDAAGL--ARVRAEIAAELPRAVKIVEAS-HGEVDARVLLGL  224 (341)
T ss_pred             HhC------CEEEEeccccCCHHHH--HHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhCC
Confidence            322      3899999999764432  334555554 33  3566554 344666666653

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.44  E-value=0.00072  Score=46.29  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChHHHHHHHhcCc
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~   37 (218)
                      |++.|++|+|||++++.+....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999987643

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.43  E-value=0.00094  Score=44.28  Aligned_cols=100  Identities=17%  Similarity=0.123  Sum_probs=57.7

Q ss_pred             EcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh
Q 027824           19 IGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH   98 (218)
Q Consensus        19 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   98 (218)
                      =+..|+||||+...|-..-.......+.-.+....     ... .+.|+|+|+....  .....+..+|.++++.+.+ .
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----FGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-L   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----CCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-h
Confidence            35567999998876644322110112221221111     111 5789999986433  2344667899999988765 4


Q ss_pred             hhHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 027824           99 ATFQNVGRWLRELREHTDP-NIIVMLIGNK  127 (218)
Q Consensus        99 ~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK  127 (218)
                      .++..+..++..+...... ...+.+|+|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            4566666666666554433 4567777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.41  E-value=0.00017  Score=56.05  Aligned_cols=61  Identities=21%  Similarity=0.376  Sum_probs=39.7

Q ss_pred             ceeeEEEEEcCCCCChHHHHHHHhcCcCCC----CCcccceeEEEEEE-EEECCeEEEEEEEeCCCc
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNL----ESKSTIGVEFATRS-LRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus        11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~----~~~~t~~~~~~~~~-~~~~~~~~~~~i~D~~G~   72 (218)
                      +..++++|+|-|++|||||+|.+.......    ...+-.|++..+.. +.+.+.. .+.++||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            456899999999999999999875543211    11133344444443 4444433 3789999993

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.38  E-value=0.0012  Score=53.48  Aligned_cols=156  Identities=17%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCc---ccceeEEEEE-----------------EEEE----------CCeEE
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESK---STIGVEFATR-----------------SLRI----------DNKVV   62 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~---~t~~~~~~~~-----------------~~~~----------~~~~~   62 (218)
                      .-.|+++||.||||||-+-+|-.........   .-+++|.++.                 .+..          .-.++
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            5678999999999999998876544411111   1122221111                 0000          11234


Q ss_pred             EEEEEeCCCchhhhhhh----hhhhcC--CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824           63 KAQIWDTAGQERYRAIT----SAYYRG--AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV  136 (218)
Q Consensus        63 ~~~i~D~~G~~~~~~~~----~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  136 (218)
                      .+.+.||.|.+.++...    ..++..  ..-+.+|++++...  +.+.+.+..+....    .-=+|+||.|-..    
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~~----i~~~I~TKlDET~----  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLFP----IDGLIFTKLDETT----  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccCC----cceeEEEcccccC----
Confidence            68999999976554432    233322  23366777776542  33333344443221    1257889999643    


Q ss_pred             CHHHHHHHHHHcCCeEEEEccCCC--CCHHHH-HHHHHHHHHHHH
Q 027824          137 STEDGKAFAEQESLYFMETSALDA--TNVENA-FTEVLTQIYKIV  178 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa~~~--~~v~~~-~~~i~~~i~~~~  178 (218)
                      ..=..-..+.+.+.|+-.++--.+  +++... -.+|++.+....
T Consensus       353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~  397 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF  397 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence            112244555666777555454333  333322 345555555433

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.37  E-value=0.0029  Score=47.50  Aligned_cols=60  Identities=23%  Similarity=0.246  Sum_probs=35.9

Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027824           82 YYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL  150 (218)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  150 (218)
                      ..+++|.+|+|+|.+-+ ++...+.. .++..... -.++.+|+||.|-.      +......+...+.
T Consensus       152 ~~~~vD~vivVvDpS~~-sl~taeri-~~L~~elg-~k~i~~V~NKv~e~------e~~~~~~~~~~~~  211 (255)
T COG3640         152 TIEGVDLVIVVVDPSYK-SLRTAERI-KELAEELG-IKRIFVVLNKVDEE------EELLRELAEELGL  211 (255)
T ss_pred             cccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHHhC-CceEEEEEeeccch------hHHHHhhhhccCC
Confidence            35689999999998753 44333222 22222211 27899999999853      2344555555554

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.34  E-value=0.012  Score=49.39  Aligned_cols=134  Identities=19%  Similarity=0.170  Sum_probs=68.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCC---Ccccc--------------------eeEEEEEEEE-------ECCeEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLE---SKSTI--------------------GVEFATRSLR-------IDNKVVK   63 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~---~~~t~--------------------~~~~~~~~~~-------~~~~~~~   63 (218)
                      --++++|+.|+||||++..|.+......   .....                    +..+....-.       ..-....
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            4689999999999999998875321110   00000                    0000000000       0011235


Q ss_pred             EEEEeCCCchhhhhh---hhhhhcC---CcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824           64 AQIWDTAGQERYRAI---TSAYYRG---AVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV  136 (218)
Q Consensus        64 ~~i~D~~G~~~~~~~---~~~~~~~---~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  136 (218)
                      +.++|++|.......   ....+..   ..-.++|+|.+.. ..+..   ....+..    ...--+|+||.|-..    
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~---i~~~f~~----~~~~g~IlTKlDet~----  405 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE---VVQAYRG----PGLAGCILTKLDEAA----  405 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH---HHHHhcc----CCCCEEEEeCCCCcc----
Confidence            789999994432211   1111211   2236788888743 33322   2222221    223467789999643    


Q ss_pred             CHHHHHHHHHHcCCeEEEEccC
Q 027824          137 STEDGKAFAEQESLYFMETSAL  158 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa~  158 (218)
                      ..-.+..+....++++..++.-
T Consensus       406 ~~G~~l~i~~~~~lPI~yvt~G  427 (484)
T PRK06995        406 SLGGALDVVIRYKLPLHYVSNG  427 (484)
T ss_pred             cchHHHHHHHHHCCCeEEEecC
Confidence            2234566777788887666543

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=7.1e-05  Score=56.59  Aligned_cols=163  Identities=13%  Similarity=0.156  Sum_probs=91.3

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC-eEEEEEEEeCCCchhhhhhhhhhhc----
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN-KVVKAQIWDTAGQERYRAITSAYYR----   84 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~----   84 (218)
                      ......|++.|+.  |+|++|++.+...-.. ..++...++......-.+ ..--..+|+.+|......+..--++    
T Consensus        42 ~~~E~~I~~~Gn~--~~tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l  118 (363)
T KOG3929|consen   42 EKFEFFIGSKGNG--GKTTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL  118 (363)
T ss_pred             ccceeEEEEecCC--ceeEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence            3456789999987  5599999887755422 235555555443332222 2223579999997665554432221    


Q ss_pred             CCcEEEEEEECCChhhH-HHHHHHHHHHH--------------------------h-----------hcCCCCcEEEEEe
Q 027824           85 GAVGALLVYDVTRHATF-QNVGRWLRELR--------------------------E-----------HTDPNIIVMLIGN  126 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~--------------------------~-----------~~~~~~p~ivv~n  126 (218)
                      ..-.+|++.|++++..+ ..++..+..+.                          .           .....+|+++|+.
T Consensus       119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs  198 (363)
T KOG3929|consen  119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS  198 (363)
T ss_pred             hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence            12348999999987532 22221111111                          1           0123589999999


Q ss_pred             CCCCCCCcc-----cCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824          127 KTDLRHLVA-----VSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY  175 (218)
Q Consensus       127 K~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i~  175 (218)
                      |.|.-...+     -...-.+..|..+|+.....|++-..-.+-+.+.+.+..+
T Consensus       199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaF  252 (363)
T KOG3929|consen  199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAF  252 (363)
T ss_pred             chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhc
Confidence            999744322     1122244556667877666677654444444444444443

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.34  E-value=0.0022  Score=52.63  Aligned_cols=137  Identities=18%  Similarity=0.225  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCC----------CC------------cccceeEEEEEE-E-----EECCeEEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNL----------ES------------KSTIGVEFATRS-L-----RIDNKVVKAQ   65 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~----------~~------------~~t~~~~~~~~~-~-----~~~~~~~~~~   65 (218)
                      .-|+++|++||||||++.+|.......          ..            ....+.+..... .     .+....+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            468899999999999999886422100          00            001111111100 0     0011234678


Q ss_pred             EEeCCCchhhh----hhhhhhhc-----CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824           66 IWDTAGQERYR----AITSAYYR-----GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV  136 (218)
Q Consensus        66 i~D~~G~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  136 (218)
                      ++||+|.....    ..+..+++     ...-+++|+|++...  +.+......+...    -+--+|+||.|-....  
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~~~--  375 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEADFL--  375 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCCCc--
Confidence            99999964221    11122221     233578899987653  1222223333211    2246889999974321  


Q ss_pred             CHHHHHHHHHHcCCeEEEEccCCC
Q 027824          137 STEDGKAFAEQESLYFMETSALDA  160 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa~~~  160 (218)
                        =.+..++...+.|+..++.-.+
T Consensus       376 --G~il~i~~~~~lPI~ylt~GQ~  397 (432)
T PRK12724        376 --GSFLELADTYSKSFTYLSVGQE  397 (432)
T ss_pred             --cHHHHHHHHHCCCEEEEecCCC
Confidence              2355666777888766665443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.31  E-value=0.0002  Score=48.48  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~   36 (218)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999664

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.31  E-value=0.0002  Score=51.62  Aligned_cols=24  Identities=38%  Similarity=0.606  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      .+|+|+|++|||||||...|....
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999987643

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.29  E-value=0.0002  Score=52.11  Aligned_cols=23  Identities=30%  Similarity=0.757  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~   36 (218)
                      .||+++|+||+||||+..+|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.27  E-value=0.0015  Score=45.10  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~   38 (218)
                      .|++.|+.|+|||||++.+.....
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999987643

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.26  E-value=0.0021  Score=50.21  Aligned_cols=106  Identities=15%  Similarity=0.224  Sum_probs=61.7

Q ss_pred             CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh-------------
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY-------------   75 (218)
Q Consensus         9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------------   75 (218)
                      +......++++|+++.|||+++++|....-.. ..+.             ...+.+.+..+|.....             
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            44556789999999999999999998755321 1111             11234555555542111             


Q ss_pred             -----------hhhhhhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 027824           76 -----------RAITSAYYRGAVGALLVYDVTRH---ATFQNVGRWLRELREHTD-PNIIVMLIGNKT  128 (218)
Q Consensus        76 -----------~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~  128 (218)
                                 .......++...+=++++|--.-   -+...-+..+..+....+ -.+|+|.+|+.-
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                       11122345666777888885321   122333444444444433 679999999874

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.26  E-value=0.0021  Score=54.50  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      -+++.||+||||||.++.|....
T Consensus        47 iLlLtGP~G~GKtttv~~La~el   69 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKEL   69 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46778999999999998887643

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.26  E-value=0.0066  Score=53.54  Aligned_cols=138  Identities=17%  Similarity=0.117  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCC---CcccceeEEEEE---------------EEE-E-----------CCeEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLE---SKSTIGVEFATR---------------SLR-I-----------DNKVVK   63 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~---------------~~~-~-----------~~~~~~   63 (218)
                      --|+++|+.|+||||.+.+|........   .....+.+.+..               .+. .           ....+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            4689999999999999998875431111   000011111000               000 0           012235


Q ss_pred             EEEEeCCCchhhhh----hhhhh--hcCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824           64 AQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV  136 (218)
Q Consensus        64 ~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  136 (218)
                      +.|+||+|......    .....  ....+-+++|+|.+.. +.+..+.   ..+...... -+-=+|+||.|-...-  
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~-~i~glIlTKLDEt~~~--  339 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGE-DVDGCIITKLDEATHL--  339 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccC-CCCEEEEeccCCCCCc--
Confidence            78999999443221    11111  1234568899998753 3444432   222221101 1236789999975421  


Q ss_pred             CHHHHHHHHHHcCCeEEEEccCC
Q 027824          137 STEDGKAFAEQESLYFMETSALD  159 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa~~  159 (218)
                        =.+..+....++|+..++.-.
T Consensus       340 --G~iL~i~~~~~lPI~yit~GQ  360 (767)
T PRK14723        340 --GPALDTVIRHRLPVHYVSTGQ  360 (767)
T ss_pred             --cHHHHHHHHHCCCeEEEecCC
Confidence              235566777788877666433

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.24  E-value=0.0039  Score=45.34  Aligned_cols=85  Identities=25%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH
Q 027824           60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTE  139 (218)
Q Consensus        60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  139 (218)
                      ..+.+.|+|+|+....  .....+..+|.+++++..+. .+...+..++..+..   .+.|+.+|+|+.|....   ...
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~---~~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH---FGIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH---cCCCEEEEEeCCCCCcc---hHH
Confidence            4567899999976422  23455688999999999874 355556666665554   34678899999997432   235


Q ss_pred             HHHHHHHHcCCeEE
Q 027824          140 DGKAFAEQESLYFM  153 (218)
Q Consensus       140 ~~~~~~~~~~~~~~  153 (218)
                      +.++++.+.+++++
T Consensus       162 ~~~~~~~~~~~~vl  175 (179)
T cd03110         162 EIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHcCCCeE
Confidence            67778888888765

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK07261 topology modulation protein; Provisional

Probab=97.23  E-value=0.00027  Score=51.16  Aligned_cols=22  Identities=41%  Similarity=0.735  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~   36 (218)
                      +|+|+|++|+|||||.+.+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998653

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.22  E-value=0.00026  Score=49.40  Aligned_cols=20  Identities=45%  Similarity=0.777  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChHHHHHHHhc
Q 027824           16 LVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~   35 (218)
                      |+++|+|||||||+++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.20  E-value=0.002  Score=50.00  Aligned_cols=135  Identities=16%  Similarity=0.106  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCC-----------CC----------CcccceeEEEEEEE--E-------E-CCeEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFN-----------LE----------SKSTIGVEFATRSL--R-------I-DNKVV   62 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~-----------~~----------~~~t~~~~~~~~~~--~-------~-~~~~~   62 (218)
                      -+|+++|++|+||||++..+......           ..          +....++++....-  .       + ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            58999999999999999877543110           00          00111222211000  0       0 11235


Q ss_pred             EEEEEeCCCchhhhh----hhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824           63 KAQIWDTAGQERYRA----ITSAYY--RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV  136 (218)
Q Consensus        63 ~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~  136 (218)
                      .+.|+|++|......    .+..++  -..+-+++|+|++...  +.+..+...+..    -.+--+|+||.|-....  
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~~~--  227 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETASS--  227 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCCCc--
Confidence            788999999653221    111222  2456689999986421  223333444432    12346889999975421  


Q ss_pred             CHHHHHHHHHHcCCeEEEEccC
Q 027824          137 STEDGKAFAEQESLYFMETSAL  158 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa~  158 (218)
                        =.+..++...+.|+..++.-
T Consensus       228 --G~~l~~~~~~~~Pi~~it~G  247 (270)
T PRK06731        228 --GELLKIPAVSSAPIVLMTDG  247 (270)
T ss_pred             --cHHHHHHHHHCcCEEEEeCC
Confidence              23556677778887666553

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.17  E-value=0.0057  Score=44.52  Aligned_cols=88  Identities=20%  Similarity=0.139  Sum_probs=46.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEE--EeCCCch-hhhhhhhhhhcCCcEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI--WDTAGQE-RYRAITSAYYRGAVGAL   90 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i--~D~~G~~-~~~~~~~~~~~~~d~~i   90 (218)
                      =.++++|+.|+|||||++.+.+-..+     +.|.      +.+++..+.+..  .+.+|.. ..-.+...++.+.+.++
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll   94 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIP-----NGDN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL   94 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCC-----CCcE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            36889999999999999998875432     1111      111221111111  1134433 33345566677776444


Q ss_pred             EE--EECCChhhHHHHHHHHHHHH
Q 027824           91 LV--YDVTRHATFQNVGRWLRELR  112 (218)
Q Consensus        91 ~v--~d~~~~~s~~~~~~~~~~i~  112 (218)
                      +=  .+.-|+.+.+.+..++..+.
T Consensus        95 LDEPts~LD~~~~~~l~~~l~~~~  118 (177)
T cd03222          95 FDEPSAYLDIEQRLNAARAIRRLS  118 (177)
T ss_pred             EECCcccCCHHHHHHHHHHHHHHH
Confidence            41  11224555566666666554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.17  E-value=0.01  Score=41.67  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            57899999999999999997754

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.13  E-value=0.00052  Score=40.48  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~   35 (218)
                      ..++.|+.|+|||||++.+.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998754

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.12  E-value=0.013  Score=47.97  Aligned_cols=136  Identities=13%  Similarity=0.057  Sum_probs=72.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCC-----CCc--------------------ccceeEEEEEEEE-------ECCe
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL-----ESK--------------------STIGVEFATRSLR-------IDNK   60 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~-----~~~--------------------~t~~~~~~~~~~~-------~~~~   60 (218)
                      ...|+++|++|+||||.+.++.......     ...                    ...++.+......       ....
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            4589999999999999998875421100     000                    0012222111100       0112


Q ss_pred             EEEEEEEeCCCchhhhh----hhhhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027824           61 VVKAQIWDTAGQERYRA----ITSAYYRG---AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL  133 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  133 (218)
                      .+.+.|+||+|......    -...++..   ..-.++|+|++...  ..+...+..+..    -.+-=+|+||.|-...
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~----~~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP----FSYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeccCCCc
Confidence            35689999999653321    11122221   22588999998652  223333333321    1234688999996442


Q ss_pred             cccCHHHHHHHHHHcCCeEEEEccC
Q 027824          134 VAVSTEDGKAFAEQESLYFMETSAL  158 (218)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (218)
                      .    =.+..++...+.|+..++.-
T Consensus       328 ~----G~~l~~~~~~~~Pi~yit~G  348 (388)
T PRK12723        328 V----GNLISLIYEMRKEVSYVTDG  348 (388)
T ss_pred             c----hHHHHHHHHHCCCEEEEeCC
Confidence            1    23556666778887655543

>PRK10646 ADP-binding protein; Provisional

Probab=97.09  E-value=0.0047  Score=43.62  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEE
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEF   50 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~   50 (218)
                      -|++-|+-|+|||||++.+...--......+.+++.
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtl   65 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTL   65 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEee
Confidence            488999999999999999976543333333333443

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.07  E-value=0.00035  Score=50.10  Aligned_cols=22  Identities=23%  Similarity=0.596  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~   36 (218)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999754

>PRK04195 replication factor C large subunit; Provisional

Probab=97.07  E-value=0.009  Score=50.57  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCc
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      .--+++.|++|+||||+++.+.+..
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4568999999999999999997754

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.07  E-value=0.00047  Score=52.14  Aligned_cols=22  Identities=41%  Similarity=0.628  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhcCc
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~   37 (218)
                      |.++|++|||||||++-+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999887644

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.05  E-value=0.0076  Score=50.65  Aligned_cols=22  Identities=41%  Similarity=0.614  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~   36 (218)
                      -.++.|++||||||-+.-|...
T Consensus       112 iLLltGPsGcGKSTtvkvLske  133 (634)
T KOG1970|consen  112 ILLLTGPSGCGKSTTVKVLSKE  133 (634)
T ss_pred             EEEEeCCCCCCchhHHHHHHHh
Confidence            4678899999999999888653

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.04  E-value=0.00062  Score=41.35  Aligned_cols=21  Identities=29%  Similarity=0.635  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~   36 (218)
                      |.+.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999998764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.02  E-value=0.00036  Score=50.39  Aligned_cols=24  Identities=42%  Similarity=0.708  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      .-+++.||+|+|||||++.|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999998866

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.0022  Score=51.50  Aligned_cols=88  Identities=15%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCc--------------CCCC-------CcccceeEEEEEEEE-------------EC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNE--------------FNLE-------SKSTIGVEFATRSLR-------------ID   58 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~--------------~~~~-------~~~t~~~~~~~~~~~-------------~~   58 (218)
                      +--|+++|-.|+||||.+-+|....              |..-       ...-.++.++.....             +.
T Consensus       101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK  180 (483)
T KOG0780|consen  101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK  180 (483)
T ss_pred             CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence            4568999999999999988764311              1100       001112333222111             12


Q ss_pred             CeEEEEEEEeCCCchhhh-hhhhh-----hhcCCcEEEEEEECCChhh
Q 027824           59 NKVVKAQIWDTAGQERYR-AITSA-----YYRGAVGALLVYDVTRHAT  100 (218)
Q Consensus        59 ~~~~~~~i~D~~G~~~~~-~~~~~-----~~~~~d~~i~v~d~~~~~s  100 (218)
                      .+++.+.|.||+|...-. ++...     -.-+.|-+|+|.|++-+..
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa  228 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA  228 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence            455789999999953221 22111     1235788999999986643

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.02  E-value=0.0006  Score=51.79  Aligned_cols=33  Identities=27%  Similarity=0.536  Sum_probs=26.2

Q ss_pred             CCCCCCCceeeEEEEEcCCCCChHHHHHHHhcC
Q 027824            4 YKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus         4 ~~~~~~~~~~~~i~l~G~~~~GKssli~~l~~~   36 (218)
                      +....-.+..++++|+|++|||||+|+..++..
T Consensus         4 F~~~~l~~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen    4 FDRNSLLKDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CChhHhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            334444566799999999999999999888764

This is thought to be an ATPase involved in viral DNA packaging [].

>PF05729 NACHT: NACHT domain

Probab=96.97  E-value=0.0033  Score=44.74  Aligned_cols=24  Identities=33%  Similarity=0.574  Sum_probs=20.4

Q ss_pred             EEEEcCCCCChHHHHHHHhcCcCC
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNEFN   39 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~~~   39 (218)
                      ++|.|++|+|||+++.++...-..
T Consensus         3 l~I~G~~G~GKStll~~~~~~~~~   26 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQLAE   26 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHHHHh
Confidence            789999999999999998765443

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.94  E-value=0.0046  Score=43.16  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=26.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEF   50 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~   50 (218)
                      --|++-|+-|+|||||.+.+...--......+++++.
T Consensus        26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtl   62 (149)
T COG0802          26 DVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTL   62 (149)
T ss_pred             CEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeee
Confidence            4688999999999999999876654344444444443

>PRK06217 hypothetical protein; Validated

Probab=96.94  E-value=0.00078  Score=49.31  Aligned_cols=23  Identities=22%  Similarity=0.498  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~   36 (218)
                      .+|+|+|.+|||||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998754

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.93  E-value=0.0016  Score=48.64  Aligned_cols=25  Identities=36%  Similarity=0.591  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhcC
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~~   36 (218)
                      ...-|+|+|++|||||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3455888999999999999999754

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.92  E-value=0.00066  Score=49.83  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      .=|+|+|++|||||||+++|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            458999999999999999998753

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.89  E-value=0.0023  Score=47.94  Aligned_cols=67  Identities=15%  Similarity=0.156  Sum_probs=38.6

Q ss_pred             EEEEEeCCCchhhh----hhhh--hhhcCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824           63 KAQIWDTAGQERYR----AITS--AYYRGAVGALLVYDVT------RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL  130 (218)
Q Consensus        63 ~~~i~D~~G~~~~~----~~~~--~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl  130 (218)
                      ...++|+||+-++.    +++.  ..++..+.-+.++.+.      +|..|  +..++..+.....-..|-|=|+.|+|+
T Consensus        98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melphVNvlSK~Dl  175 (290)
T KOG1533|consen   98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPHVNVLSKADL  175 (290)
T ss_pred             cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccchhhhhHhHH
Confidence            56899999975432    2221  2344466656655554      45544  333334443333345677888899998


Q ss_pred             C
Q 027824          131 R  131 (218)
Q Consensus       131 ~  131 (218)
                      .
T Consensus       176 ~  176 (290)
T KOG1533|consen  176 L  176 (290)
T ss_pred             H
Confidence            4

>PRK03839 putative kinase; Provisional

Probab=96.87  E-value=0.0009  Score=48.80  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~   36 (218)
                      +|+++|.||+||||+.++|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.85  E-value=0.0009  Score=50.28  Aligned_cols=23  Identities=35%  Similarity=0.535  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      -|+++|++|||||||++-+-+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999886533

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.85  E-value=0.0014  Score=48.60  Aligned_cols=23  Identities=48%  Similarity=0.639  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      .++++|++|||||||++.+.+-+
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            58999999999999999986543

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.84  E-value=0.0074  Score=44.77  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChHHHHHHHhcCc
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~   37 (218)
                      |+++|++|+||||+++.+++..
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.84  E-value=0.001  Score=45.99  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58999999999999999987754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.84  E-value=0.0011  Score=45.39  Aligned_cols=27  Identities=19%  Similarity=0.317  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNL   40 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~   40 (218)
                      -.++++|++|+|||+++..+.......
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            468999999999999999998766543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.83  E-value=0.002  Score=43.78  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      --|++-|+-|+|||||++.+...-
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc
Confidence            458999999999999999887654

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.82  E-value=0.00043  Score=55.59  Aligned_cols=60  Identities=17%  Similarity=0.219  Sum_probs=0.0

Q ss_pred             CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG   71 (218)
Q Consensus         8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G   71 (218)
                      ......+-|.++|.|++||||+||+|-........ |-.|.+-.-..+.+..   .+-++|+||
T Consensus       302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmk---rIfLIDcPG  361 (572)
T KOG2423|consen  302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMK---RIFLIDCPG  361 (572)
T ss_pred             ccCccceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHh---ceeEecCCC

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.82  E-value=0.0011  Score=46.14  Aligned_cols=21  Identities=57%  Similarity=0.866  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~   36 (218)
                      |+++|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK14530 adenylate kinase; Provisional

Probab=96.81  E-value=0.0011  Score=49.89  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~   35 (218)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.80  E-value=0.0012  Score=48.47  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~   36 (218)
                      .|+|+|++|+|||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999664

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.80  E-value=0.001  Score=45.27  Aligned_cols=21  Identities=19%  Similarity=0.435  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhcC
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~   36 (218)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998664

...

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.78  E-value=0.001  Score=46.24  Aligned_cols=26  Identities=27%  Similarity=0.418  Sum_probs=23.0

Q ss_pred             CceeeEEEEEcCCCCChHHHHHHHhc
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        10 ~~~~~~i~l~G~~~~GKssli~~l~~   35 (218)
                      .+...+|+|.|-||+|||||..++..
T Consensus         4 ~r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    4 ERERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence            36678999999999999999999863

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.78  E-value=0.029  Score=40.52  Aligned_cols=84  Identities=14%  Similarity=0.022  Sum_probs=50.1

Q ss_pred             EEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 027824           63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGK  142 (218)
Q Consensus        63 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  142 (218)
                      .+.|+|+|+.....  ....+..+|.+|++++.+. .++..+..++..+...  ....+.+++|+.+.....  ..+...
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence            57899999864332  3345678999999988764 3444444455555442  223567889999864322  112234


Q ss_pred             HHHHHcCCeEE
Q 027824          143 AFAEQESLYFM  153 (218)
Q Consensus       143 ~~~~~~~~~~~  153 (218)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44455666654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.77  E-value=0.0012  Score=46.06  Aligned_cols=23  Identities=17%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      .|+++|+.++|||||+..|++..
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998754

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.77  E-value=0.035  Score=43.66  Aligned_cols=74  Identities=23%  Similarity=0.251  Sum_probs=42.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcC--CcEEEE
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRG--AVGALL   91 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--~d~~i~   91 (218)
                      -.|++.|++||||||+++.+-...+                          ..+|-.....+..+.......  .+.+.+
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~~~g~--------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av   60 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALEDLGY--------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAV   60 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHcCC--------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEE
Confidence            3689999999999999999932111                          011222222233333222221  355778


Q ss_pred             EEECCChhhHHHHHHHHHHHHh
Q 027824           92 VYDVTRHATFQNVGRWLRELRE  113 (218)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~i~~  113 (218)
                      ++|+.+...+..+..++..+..
T Consensus        61 ~iD~r~~~~~~~~~~~~~~L~~   82 (288)
T PRK05416         61 VIDVRSRPFFDDLPEALDELRE   82 (288)
T ss_pred             EEccCchhhHHHHHHHHHHHHH
Confidence            8888776544555555666654

>PRK01889 GTPase RsgA; Reviewed

Probab=96.75  E-value=0.0017  Score=52.67  Aligned_cols=25  Identities=40%  Similarity=0.635  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~   38 (218)
                      -+++++|.+|+|||||++.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            3799999999999999999987543

>PRK14532 adenylate kinase; Provisional

Probab=96.73  E-value=0.0013  Score=48.28  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~   35 (218)
                      +|+++|+|||||||+..+|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>PRK13949 shikimate kinase; Provisional

Probab=96.72  E-value=0.0014  Score=47.30  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~   36 (218)
                      +|+|+|++|+||||+.+.+...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999987653

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.72  E-value=0.0012  Score=45.83  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      .|+++|++|+|||+|++.+....
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999886543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.72  E-value=0.0013  Score=47.83  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhcC
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~   36 (218)
                      .|+|+|++|||||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998665

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PLN02200 adenylate kinase family protein

Probab=96.72  E-value=0.0022  Score=48.88  Aligned_cols=24  Identities=21%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhc
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        12 ~~~~i~l~G~~~~GKssli~~l~~   35 (218)
                      ..+.|+|+|+|||||||+..+|..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.69  E-value=0.0015  Score=47.57  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhcCc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      -|+|+|++|||||||++.|.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            48999999999999999998743

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14531 adenylate kinase; Provisional

Probab=96.69  E-value=0.0015  Score=47.76  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~   36 (218)
                      .+|+++|+|||||||+..++...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988553

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.69  E-value=0.0016  Score=43.08  Aligned_cols=21  Identities=33%  Similarity=0.678  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHh
Q 027824           14 FKLVLIGDSGVGKSNLLSRFT   34 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~   34 (218)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999999985

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.68  E-value=0.0073  Score=48.30  Aligned_cols=96  Identities=18%  Similarity=0.073  Sum_probs=62.0

Q ss_pred             EEeCCCch-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 027824           66 IWDTAGQE-RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF  144 (218)
Q Consensus        66 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  144 (218)
                      +-+.+|+. .+.......+..+|+++.|+|+-++.+...     ..+.... .+.|.++|+||.|+..... ...=.+.+
T Consensus        14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v-~~k~~i~vlNK~DL~~~~~-~~~W~~~~   86 (322)
T COG1161          14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV-KEKPKLLVLNKADLAPKEV-TKKWKKYF   86 (322)
T ss_pred             ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH-ccCCcEEEEehhhcCCHHH-HHHHHHHH
Confidence            33447754 566677788899999999999999865433     2233332 3445599999999965332 11122233


Q ss_pred             HHHcCCeEEEEccCCCCCHHHHHH
Q 027824          145 AEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus       145 ~~~~~~~~~~~Sa~~~~~v~~~~~  168 (218)
                      ..+.+...+.++++.+.+...+..
T Consensus        87 ~~~~~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          87 KKEEGIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HhcCCCccEEEEeecccCccchHH
Confidence            333466678888888877776664

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.67  E-value=0.0014  Score=52.22  Aligned_cols=22  Identities=50%  Similarity=0.703  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHhcCc
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        16 i~l~G~~~~GKssli~~l~~~~   37 (218)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999886643

>KOG2203 consensus GTP-binding protein [General function prediction only]

Probab=96.66  E-value=0.0019  Score=54.00  Aligned_cols=59  Identities=19%  Similarity=0.281  Sum_probs=38.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI---DNKVVKAQIWDTAGQ   72 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~G~   72 (218)
                      ..-|.|+|+.++|||||+|.|++-.|.... ...+.....+-+.+   .+..--+.++|..|.
T Consensus        37 YhVVavmG~QSSGKSTLLN~LFgTnF~~MD-A~~gRqQTTKGIWlar~~~i~p~i~vmDvEGT   98 (772)
T KOG2203|consen   37 YHVVAVMGSQSSGKSTLLNHLFGTNFREMD-AFKGRQQTTKGIWLARCAGIEPCILVMDVEGT   98 (772)
T ss_pred             eeEEEEecCcccchHHHHHHHhccChHHHH-hhhccccccchhhHHhhcCCCCceEEEecccC
Confidence            356899999999999999999998886654 33333333333332   222222567777763

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=96.66  E-value=0.0064  Score=50.02  Aligned_cols=24  Identities=17%  Similarity=0.469  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      ..+++.|++|+|||++++.+....
T Consensus        56 ~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         56 LNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999998643

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.66  E-value=0.0015  Score=48.39  Aligned_cols=22  Identities=45%  Similarity=0.517  Sum_probs=18.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFT   34 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~   34 (218)
                      .--.+++||+|||||||++.|-
T Consensus        33 ~~VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          33 NKVTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             CceEEEECCCCcCHHHHHHHHH
Confidence            3457899999999999998873

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.66  E-value=0.0016  Score=47.70  Aligned_cols=22  Identities=18%  Similarity=0.437  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhc
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~   35 (218)
                      ..|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.65  E-value=0.0016  Score=49.39  Aligned_cols=24  Identities=38%  Similarity=0.661  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~   36 (218)
                      .++|+|+|+|||||||+...|...
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999999988553

>PLN03025 replication factor C subunit; Provisional

Probab=96.64  E-value=0.02  Score=45.79  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcCcC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~~~   38 (218)
                      ..+++.|++|+||||++..+....+
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~   59 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHELL   59 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHh
Confidence            3589999999999999998876543

>PRK02496 adk adenylate kinase; Provisional

Probab=96.64  E-value=0.0018  Score=47.36  Aligned_cols=23  Identities=22%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhcC
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~i~l~G~~~~GKssli~~l~~~   36 (218)
                      .+|+++|+|||||||+.+.|...
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~   24 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEH   24 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999988643

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.62  E-value=0.0026  Score=45.98  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcC
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~   36 (218)
                      ..-+.++|.+|||||||++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346899999999999999999864

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=96.61  E-value=0.01  Score=49.39  Aligned_cols=74  Identities=22%  Similarity=0.264  Sum_probs=50.5

Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH---HHHcCC
Q 027824           76 RAITSAYYRGAVGALLVYDVTRHATF--QNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF---AEQESL  150 (218)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~  150 (218)
                      +.+|. .+..+|+|+.++|+-+|--|  ..+..+...+.    ..+..++++||.||..     .++...|   ....++
T Consensus       166 RQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDLl~-----~~qr~aWa~YF~~~ni  235 (562)
T KOG1424|consen  166 RQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADLLP-----PEQRVAWAEYFRQNNI  235 (562)
T ss_pred             HHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhcCC-----HHHHHHHHHHHHhcCc
Confidence            33443 35689999999999998544  34444544443    3456799999999944     3444444   445789


Q ss_pred             eEEEEccCC
Q 027824          151 YFMETSALD  159 (218)
Q Consensus       151 ~~~~~Sa~~  159 (218)
                      ++++-||..
T Consensus       236 ~~vf~SA~~  244 (562)
T KOG1424|consen  236 PVVFFSALA  244 (562)
T ss_pred             eEEEEeccc
Confidence            999999876

>PRK00625 shikimate kinase; Provisional

Probab=96.61  E-value=0.0018  Score=46.88  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhc
Q 027824           15 KLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        15 ~i~l~G~~~~GKssli~~l~~   35 (218)
                      +|+++|.+||||||+.+.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.60  E-value=0.013  Score=46.70  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhcCc
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        13 ~~~i~l~G~~~~GKssli~~l~~~~   37 (218)
                      ..+|++.|++|+|||||++.|+...
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		6e-77
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-76
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		5e-76
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-75
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		4e-75
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-74
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-73
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-68
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		3e-68
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		4e-65
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		8e-61
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		8e-61
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		5e-49
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-48
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-47
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-47
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-47
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-46
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-45
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-45
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-45
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		4e-45
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		9e-45
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		9e-45
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		9e-45
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-44
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-44
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-44
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-44
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		7e-44
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-43
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-43
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-42
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		6e-41
2efc_B	181	Ara7-GdpATVPS9A Length = 181		9e-41
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-40
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-40
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-40
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-40
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		7e-40
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		8e-40
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-39
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-39
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		7e-39
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-38
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-38
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-38
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-38
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-38
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-38
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-38
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-38
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-38
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		3e-38
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		4e-38
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		5e-38
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		7e-38
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		9e-38
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-37
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		3e-37
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-36
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		6e-36
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		8e-36
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-35
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-35
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-35
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-34
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-33
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		3e-33
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-33
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-33
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		6e-33
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-32
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-32
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-32
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-32
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		4e-32
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		6e-32
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		8e-32
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		8e-32
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-31
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-31
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-31
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-31
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-31
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		7e-31
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		8e-31
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-30
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-30
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		3e-30
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		4e-30
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-30
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		6e-30
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-30
1vg1_A	185	Gdp-bound Rab7 Length = 185		7e-30
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		8e-30
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-29
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		4e-29
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		7e-27
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-24
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		8e-23
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-21
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		4e-21
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		4e-21
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		5e-21
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		5e-21
1byu_A	216	Canine Gdp-Ran Length = 216		6e-21
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		6e-21
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		7e-21
2bku_A	177	Kap95p:rangtp Complex Length = 177		7e-21
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		7e-21
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		8e-21
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-20
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-20
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-20
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		5e-20
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		5e-20
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		6e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		6e-20
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-19
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-19
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-19
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-19
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-18
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-18
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-18
1mh1_A	186	Small G-Protein Length = 186		7e-18
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		8e-18
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		8e-18
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		8e-18
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-17
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-17
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-17
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-17
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-17
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-17
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-17
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		3e-17
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-17
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-17
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		4e-17
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		4e-17
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-17
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		4e-17
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		4e-17
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		5e-17
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		5e-17
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		6e-17
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-16
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-16
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-16
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-16
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-16
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-16
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-16
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		3e-16
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-16
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		3e-16
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		3e-16
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-16
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-16
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-16
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-16
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-16
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-16
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		6e-16
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		6e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-15
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-15
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-15
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-15
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		5e-15
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		6e-15
1s1c_A	183	Crystal Structure Of The Complex Between The Human		6e-15
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		7e-15
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		7e-15
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		7e-15
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		7e-15
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		7e-15
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		7e-15
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		7e-15
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		8e-15
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		8e-15
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-14
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-14
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-14
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-14
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-14
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-14
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		4e-14
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		9e-14
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-13
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-13
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-13
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		1e-13
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-13
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-13
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-13
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-13
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-13
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		4e-13
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		7e-13
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-12
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-12
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-12
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-12
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-12
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-12
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		3e-12
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-12
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		3e-12
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-12
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-12
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-12
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-12
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-12
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-12
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		3e-12
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		4e-12
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		4e-12
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		4e-12
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		5e-12
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		5e-12
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		5e-12
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-11
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-11
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-11
2kb0_A	178	Cdc42(T35a) Length = 178		1e-11
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-11
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-11
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-11
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-11
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-11
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-11
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-11
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		3e-11
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-11
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-11
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		4e-11
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		4e-11
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-11
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		5e-11
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		5e-11
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		5e-11
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		6e-11
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-11
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		6e-11
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-11
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-11
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		7e-11
6q21_A	171	Molecular Switch For Signal Transduction: Structura		8e-11
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		8e-11
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		9e-11
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		1e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-10
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-10
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-10
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-10
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-10
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-10
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-10
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-10
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-10
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-10
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-10
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-10
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		5e-10
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		5e-10
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		5e-10
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-10
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		6e-10
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		6e-10
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		6e-10
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		8e-10
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		8e-10
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-09
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		4e-09
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		4e-09
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		4e-08
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		6e-08
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		5e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		6e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-06
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		6e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		7e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		8e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		1e-04
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		1e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		1e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-04
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		1e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		1e-04
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-04
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		3e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		4e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		4e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		4e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		5e-04
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		7e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		7e-04
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		7e-04
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		8e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		9e-04

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  283 bits (723), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 157/174 (90%)
Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           YDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQERYR ITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 183
           LRHL AV T++ +AFAE+ +L F+ETSALD+TNVE AF  +LT+IY+IVS++ +
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  280 bits (716), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 128/172 (74%), Positives = 153/172 (88%)
Query: 6   PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ 65
           P   YDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQ
Sbjct: 13  PRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 72
Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIG 125
           IWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+G
Sbjct: 73  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 132
Query: 126 NKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
           NK+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY+I
Sbjct: 133 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  280 bits (716), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 128/169 (75%), Positives = 153/169 (90%)
Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQI
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GN
Sbjct: 83  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
           K+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  277 bits (708), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 127/170 (74%), Positives = 153/170 (90%)
Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
           +EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIW
Sbjct: 3   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
           DTAG ERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK
Sbjct: 63  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
           +DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY+I
Sbjct: 123 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  277 bits (708), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 127/169 (75%), Positives = 152/169 (89%)
Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQI
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAG ERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GN
Sbjct: 83  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
           K+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  274 bits (701), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/169 (74%), Positives = 151/169 (89%)
Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQI
Sbjct: 5   DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAG ERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ L+GN
Sbjct: 65  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
           K+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  271 bits (693), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 125/167 (74%), Positives = 149/167 (89%)
Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAG ERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ L+GNK+
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
           DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  254 bits (650), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/216 (59%), Positives = 165/216 (76%), Gaps = 9/216 (4%)
Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           +YD LFK+VLIGDSGVGKSNLLSRFTKNEFN++SKSTIGVEFATR+L I+ K +KAQIWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQERYRAITSAYYRGAVGAL+VYD+++ ++++N   WL ELRE+ D N+ V LIGNK+
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG-- 186
           DL HL AV TE+ K FA++  L F ETSAL++ NV+ AF E++  IY+ VSK  ++ G  
Sbjct: 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDS 188
Query: 187 -SNGTA--STLPSKGETINVKDDSSVLKRI---GCC 216
            +NG A  ++ P+ G TI++    +  K+     CC
Sbjct: 189 SANGNANGASAPN-GPTISLTPTPNENKKANGNNCC 223

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  254 bits (648), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 115/173 (66%), Positives = 152/173 (87%), Gaps = 1/173 (0%)
Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWD 68
           YDYLFK+VLIGDSGVGKSNLLSRFT++EFNLESKSTIGVEFAT+S+++ +NK++KAQIWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQERYRAITSAYYRGAVGALLVYD+T+  +F+N+ +WL+ELR++ D NI+++L+GNK+
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
           DL+HL  ++  D   +A++E L F+ETSAL+ATNVE AF ++L +IY +  K+
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKK 176

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  244 bits (622), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 113/176 (64%), Positives = 146/176 (82%)
Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           +YDYLFK+VLIGDSGVGKSNLLSRFT +EFN+ESKSTIGVEFATR++ ++NK +KAQIWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAG ERYRAITSAYYRGAVGAL+VYD+++ ++++N   WL ELRE+ D N+ V LIGNK+
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 184
           DL HL AV T++ K FA +  + F ETSAL++ NV+ AF E++  I+++VSK  V+
Sbjct: 126 DLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVD 181

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  229 bits (585), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 142/177 (80%)
Query: 5   KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKA 64
           +  E+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    VKA
Sbjct: 17  RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76
Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI 124
           QIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  V RWL+EL +H +  I+VML+
Sbjct: 77  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136
Query: 125 GNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
           GNK+DL     V TE+ + FAE   L F+ETSALD+TNVE AF  VL +I+  VSK+
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  229 bits (584), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 141/174 (81%)
Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
           E+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    VKAQIW
Sbjct: 5   EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
           DTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  V RWL+EL +H +  I+VML+GNK
Sbjct: 65  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 124
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
           +DL     V TE+ + FAE   L F+ETSALD+TNVE AF  VL +I+  VSK+
Sbjct: 125 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  190 bits (483), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 117/167 (70%)
Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H++ N+++MLIGNK+D
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L     V  E+G+AFA +  L FMETSA  A+NVE AF     +IY+
Sbjct: 127 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 116/169 (68%)
Query: 12  YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
           YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131
           QE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H+  N+++MLIGNK+DL 
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
               V  E+G+AFA +  L FMETSA  A NVE AF     +IY+ + +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 117/167 (70%)
Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + +  + +K QIWDT
Sbjct: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 71
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQER+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN +++LIGNK D
Sbjct: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L     V+ E+ K FAE+  L F+E SA    NVE+AF E   +IY+
Sbjct: 132 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/210 (45%), Positives = 136/210 (64%), Gaps = 5/210 (2%)
Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           + EYDYLFKL+LIG+SGVGKS LL RF+ + +  +  STIGV+F  +++ +D K VK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  +    ++ +L+GN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
           K DL+    V  +  K FA+   + F+ETSALD+TNVE+AF  +  QI + +S++ +   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL--- 178
Query: 187 SNGTASTLPSKGETINVKDDSSVLKRIGCC 216
            N T      KG  +N+K  S      GCC
Sbjct: 179 -NETTQKKEDKG-NVNLKGQSLTNTGGGCC 206

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  183 bits (465), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 96/210 (45%), Positives = 137/210 (65%), Gaps = 6/210 (2%)
Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           + EYDYLFKL+LIG+SGVGKS LL RF+ + +  +  STIGV+F  +++ +D K VK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  +    ++ +L+GN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
           K DL+    V  +  K FA+   + F+ETSALD+TNVE+AF  +  QI + +S++ +   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL--- 178
Query: 187 SNGTASTLPSKGETINVKDDSSVLKRIGCC 216
            N T      KG  +N+K   S+    GCC
Sbjct: 179 -NETTQKKEDKG-NVNLK-GQSLTNTGGCC 205

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 116/167 (69%)
Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + +  + +K QIWDT
Sbjct: 27  YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 86
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQ R+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN +++LIGNK D
Sbjct: 87  AGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L     V+ E+ K FAE+  L F+E SA    NVE+AF E   +IY+
Sbjct: 147 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 121/187 (64%), Gaps = 2/187 (1%)
Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           M+   P  EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K
Sbjct: 6   MSSMNP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63
Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
            +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+ 
Sbjct: 64  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123
Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
            +L+GNK DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K +  
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183
Query: 181 RAVEAGS 187
            A   G+
Sbjct: 184 GATAGGA 190

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVV 62
           G+ P  EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +
Sbjct: 1   GHMP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 58
Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM 122
           K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +   N+  +
Sbjct: 59  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKL 118
Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVV 62
           G+ P  EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +
Sbjct: 1   GHMP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 58
Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM 122
           K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +   N+  +
Sbjct: 59  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKL 118
Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 117/166 (70%)
Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           EYDYLFKL+LIG+SGVGKS LL RF+ + +  +  STIGV+F  +++ +D K VK QIWD
Sbjct: 17  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  +    ++ +L+GNK 
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           DL+    V  +  K FA+   + F+ETSALD+TNVE+AF  +  QI
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  176 bits (446), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 120/170 (70%), Gaps = 1/170 (0%)
Query: 6   PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ 65
           PDE+YD+LFKLVL+GD+ VGK+ ++ RF    F+    STIGV+F  ++L I  K VK Q
Sbjct: 22  PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIG 125
           IWDTAGQER+R IT +YYR A GA+L YD+T+ ++F +V  W+ ++R++   NI+ +LIG
Sbjct: 82  IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141
Query: 126 NKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
           NK+DL  L  VS  + ++ AE  + L  +ETSA D++NVE AF  V T++
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  176 bits (446), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 111/158 (70%)
Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
           +     VS E G+  A    + FMETSA    NVENAF
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  176 bits (446), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 114/168 (67%)
Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWD
Sbjct: 21  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK 
Sbjct: 81  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 140
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K
Sbjct: 141 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 188

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 114/168 (67%)
Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK 
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 121/176 (68%), Gaps = 2/176 (1%)
Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVV 62
           G  P  EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ ++NK V
Sbjct: 1   GMNP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTV 58
Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM 122
           K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +W++E+  +   N+  +
Sbjct: 59  KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKL 118
Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIV 178
           L+GNK DL     V++++G+  A+   + F+ETSA +A NVE AF  +  +I K V
Sbjct: 119 LVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/176 (50%), Positives = 117/176 (66%), Gaps = 2/176 (1%)
Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           M+   P  EYDYLFKL+LIGDSGVGK+ LL RF  + +     STIGV+F  R++ +D K
Sbjct: 6   MSSMNP--EYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63
Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
            +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+ 
Sbjct: 64  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123
Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            +L+GNK DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 114/170 (67%)
Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           + EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QI
Sbjct: 27  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GN
Sbjct: 87  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           K DL     V     K FA+   + F+ETSA +ATNVE +F     +I K
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKK 196

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  173 bits (438), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 110/157 (70%)
Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           DYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           GQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
                VS E G+  A    + FMETSA    NVENAF
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 160

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 114/170 (67%)
Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           + EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+G 
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           K DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 171

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 113/168 (67%)
Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           EYD LFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK 
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/157 (50%), Positives = 107/157 (68%)
Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           D+LFK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK QIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           GQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNI+V+L GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
                V+  +   FA++  L F+ETSAL   NVE AF
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  163 bits (413), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 110/167 (65%)
Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
           E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
           DTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
            DL     V+  +   FA++  L F+ETSAL   NVE AF +   +I
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  162 bits (411), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 114/163 (69%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLVL+GD G GKS+L+ RF K++F    +STIG  F +++L +++  VK +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
           Y ++   YYRGA  A++V+DVT  A+F+   +W++EL+   +PN+++ L GNK+DL    
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 135 AVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
            V+ ED + +A++  L+FMETSA  ATNV+  F E+  ++ ++
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 108/162 (66%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
           +R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK DL    
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 135 AVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            V     K FA+   + F+ETSA +ATNVE +F  +  +I K
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 162

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 110/167 (65%)
Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
           E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIW
Sbjct: 6   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
           DTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 125
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
            DL     V+  +   FA++  L F+ETSAL   +VE AF +   +I
Sbjct: 126 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/159 (51%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           +YD+LFKL++IGDSGVGKS+LL RF  N F+    +TIGV+F  R++ I+ + VK QIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+ ++ D ++  +L+GNK 
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKN 123
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
           D      V TED   FA Q  +   ETSA +  NVE  F
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  160 bits (405), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 115/167 (68%)
Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
           E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ I+ + VK QIW
Sbjct: 21  EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
           DTAGQER+R+IT +YYR A   +L YD+T   +F+ +  WLRE+ ++    +I +L+GNK
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
            DL     VS +  + F+E + +Y++ETSA ++ NVE  F ++  ++
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  160 bits (404), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+S+ +D+  VK +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   TF     W++EL+    P+I++ L GNK DL + 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
             V  E+ +A+A+  SL FMETSA  A NV + F  +  ++ K
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 171

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  159 bits (403), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
           + YD + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK Q+W
Sbjct: 15  KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
           DTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+ +W + + EH +    ++L+GNK
Sbjct: 75  DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 134
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY-KIVSKRAVEAG 186
           +D+   V V+ + G+A A++  + F+E+SA +  NV   F  +   I  KI S + V  G
Sbjct: 135 SDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVG 193
Query: 187 S 187
           +
Sbjct: 194 N 194

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 109/167 (65%)
Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
           E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIW
Sbjct: 3   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
           DTAG ER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
            DL     V+  +   FA++  L F+ETSAL   +VE AF +   +I
Sbjct: 123 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 104/157 (66%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   TF     W++EL+    PNI++ L GNK DL   
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
            AV  ++ +A+A+  SL FMETSA  A NV   F  +
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           GQER+R IT+AYYRGA+G +LVYD+T   TF N+ +W + + EH +    ++L+GNK+D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
              V V+ + G+A A++  + F+E+SA +  NV   F
Sbjct: 121 ETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL + 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            AV  ++ +++A+  SL FMETSA  + NV   F  +  ++ K
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            AV  ++ +++A+  SL FMETSA  + NV   F  +  ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            AV  ++ +++A+  SL FMETSA  + NV   F  +  ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 103/157 (65%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STI   F T+++ +D+  VK +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   TF     W++EL+    PNI++ L GNK DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
            AV  ++ +A+A+  SL FMETSA  A NV   F  +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            AV  ++ +++A+  SL FMETSA  + NV   F  +  ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 105/161 (65%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   TF     W++EL+    PNI++ L GNK DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
            AV  ++ +A+A+  SL FMETSA  A NV   F  +  ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWD 68
           YD  FK++L+GDSGVGK+ LL RF    F   +  ST+G++F  + L +D   VK Q+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQER+R++T AYYR A   LL+YDVT  A+F N+  WL E+ E+   ++ +ML+GNK 
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           D  H   V  EDG+  A++  L FMETSA    NV+ AFT +  ++
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            AV  ++ +++A+  SL FMETSA  + NV   F  +  ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            AV  ++ +++A+  SL FMETSA  + NV   F  +  ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK Q+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132
           ER+R IT+AYYRGA+G +LVYDVT   TF N+ +W + + EH +    ++L+GNK+D+  
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            V V+ + G+A A++  + F+E+SA +  NV   F
Sbjct: 127 RV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 160

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            AV  ++ +++A+  SL FMETSA  + NV   F  +  ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  153 bits (387), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK QIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           GQER+R IT+AYYRGA G +LVYD+T   TF N+ +W + + EH +    ++L+GNK+D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
              V V+ + G+A A++  + F+E+SA +  NV   F
Sbjct: 121 ETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  153 bits (386), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 107/163 (65%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL + 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            AV  ++ +++A+  SL F ETSA  + NV   F  +  ++ K
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  153 bits (386), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK Q+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           GQER+R IT+AYYRGA G +LVYDVT   TF N+ +W + + EH +    ++L+GNK+D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
              V V+ + G+A A++  + F+E+SA +  NV   F
Sbjct: 121 ETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 107/163 (65%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            AV  ++ +++A+  SL FMETSA  + NV   F  +  ++ K
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 105/161 (65%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+ L+GD+GVGKS+++ RF ++ F+     TIG  F T++++  N++ K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+RA+   YYRG+  A++VYD+T+  TF  +  W+RELR+H  P+I+V + GNK DL  +
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
             V   D K +A+     F+ETSA +A N+   F E+  +I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 104/161 (64%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+ L+GD+GVGKS+++ RF ++ F+     TIG  F T++++  N++ K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+RA+   YYRG+  A++VYD+T+  TF  +  W+RELR+H  P+I+V + GNK DL  +
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
             V   D K +A+     F+ETSA +A N+   F E+  +I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 105/165 (63%)
Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           +DY+FKL++IG+S VGK++ L R+  + F     ST+G++F  +++    K VK QIWDT
Sbjct: 20  FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  V+L+GNK D
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           +     V TE G+  AEQ    F E SA +  +V  AF  ++  I
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 107/165 (64%)
Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +++  ++K +K QIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  V+L+GNK D
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           +     VS+E G+  A+     F E SA D  NV+  F  ++  I
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 103/161 (63%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+ L+GD+GVGKS+++ RF ++ F+     TIG  F T+++   N++ K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+ ++   YYRG+  A++VYD+T+  +F  + +W++EL+EH   NI++ + GNK DL  +
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
             V  +D K +AE      +ETSA +A N+E  F  +  QI
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 103/164 (62%)
Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           DY+FKL+LIG+S VGK++ L R+  + F     ST+G++F  +++   +K +K QIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           GQERYR IT+AYYRGA+G LL+YD+    +F  V  W  +++ ++  N  V+L+GNK DL
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
                V  EDG+  A+     F E SA +  NV+  F  ++  I
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 113/187 (60%), Gaps = 2/187 (1%)
Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           DE+     K+++IG+SGVGKS+LL RFT + F+ E  +TIGV+F  +++ +D    K  I
Sbjct: 9   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIV-MLIG 125
           WDTAGQER+R +T +YYRGA G +LVYDVTR  TF  +  WL EL  +   N IV  L+G
Sbjct: 69  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 126 NKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEA 185
           NK D +    V   +G  FA + S  F+E SA     V+ AF E++ +I +       E 
Sbjct: 129 NKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 187
Query: 186 GSNGTAS 192
            ++G +S
Sbjct: 188 QNSGPSS 194

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 109/167 (65%), Gaps = 1/167 (0%)
Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           D+  ++++IG  GVGK++L+ RFT + F    KST+GV+F  +++ +  K ++ QIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           GQER+ +ITSAYYR A G +LVYD+T+  TF ++ +W++ + ++   +  ++L+GNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 131 RHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYK 176
                ++ + G+ FA+Q   + F E SA D  NV+  F +++  I K
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 102/165 (61%)
Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           +DY FK+++IG+S VGK++ L R+  + F     ST+G++F  +++  ++K +K QIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AG ERYR IT+AYYRGA G +L YD+T   +F  V  W  +++ ++  N  V+L+GNK D
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
                 VS+E G+  A+     F E SA D  NV+  F  ++  I
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 107/167 (64%), Gaps = 6/167 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           LFK++L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + L +D   V  QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKT 128
           ER+R++ + +YRG+   LL + V    +FQN+  W +E   + D     +   +++GNKT
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 129 DLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQI 174
           D++    VSTE+ +A+ +    Y + ETSA D+TNV  AF E + +I
Sbjct: 131 DIKER-QVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 108/157 (68%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLV +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++++ V+ Q+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R++  +Y R +  A++VYD+T   +FQ   +W+ ++R     ++I+ML+GNKTDL   
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
             ++ E+G+  A++ S+ F+ETSA    NV+  F  V
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 108/157 (68%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLV +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++++ V+ Q+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R++  +Y R +  A++VYD+T   +F    +W+ ++R     ++I+ML+GNKTDL   
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
             VSTE+G+  A++ ++ F+ETSA    NV+  F  V
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 108/157 (68%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLV +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++++ ++ Q+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R++  +Y R +  A++VYD+T   +FQ   +W+ ++R     ++I+ML+GNKTDL   
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
             VS E+G+  A++ ++ F+ETSA    NV+  F  V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 108/157 (68%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLV +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++++ V+ Q+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R++  +Y R +  A++VYD+T   +FQ   +W+ ++R     ++I+ML+GNKTDL   
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
             VS E+G+  A++ ++ F+ETSA    NV+  F  V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 83/115 (72%)
Query: 16  LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75
           L+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76  RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           LFK++L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + L +D   V  QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKT 128
           ER+R++ + +YRG+   LL + V    +FQN+  W +E   + D     +   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 129 DLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQI 174
           D+     VSTE+ +A+      Y + ETSA DATNV  AF E + ++
Sbjct: 127 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           LFK++L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + L +D   V  QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKT 128
           ER+R++ + +YRG+   LL + V    +FQN+  W +E   + D     +   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 129 DLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQI 174
           D+     VSTE+ +A+      Y + ETSA DATNV  AF E + ++
Sbjct: 129 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 107/157 (68%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLV +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++++ ++ Q+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R++  +Y R +  A++VYD+T   +FQ   +W+ ++R     ++I+ML+GNKTDL   
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
             VS E+G+  A++ ++ F+ETSA    NV+  F  V
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLVL+G++ VGKS+++ RF  N+F    + TIG  F T+ + I+   VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
           + ++   YYR A  AL+VYDVT+  +F     W++EL E    +II+ L+GNK D     
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 135 A---VSTEDGKAFAEQESLYFMETSALDATNVENAF 167
               V+ E+G+  AE++ L F ETSA    NV + F
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  133 bits (334), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 107/157 (68%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLV +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++++ V+ Q+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R++  +Y R +  A++VYD+T   +FQ   +W+ ++R     ++I+ML+GNKTDL   
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
             VS E+G+  A++ ++ F+ETSA    NV+  F  V
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  133 bits (334), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 107/157 (68%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLV +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++++ V+ Q+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R++  +Y R +  A++VYD+T   +FQ   +W+ ++R     ++I+ML+GNKTDL   
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
             VS E+G+  A++ ++ F+ETSA    NV+  F  V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 107/170 (62%), Gaps = 6/170 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++L+GD GVGKS+L++R+  N+F+ ++  TIGVEF  R L +D + V  QIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKT 128
           ER++++ + +YRGA   LL + V    +F+N+G W +E   + D     +   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 129 DLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQIYKI 177
           D +    V+TE+ + +  +   Y ++ETSA D TNV  AF E + Q+  +
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 113/191 (59%), Gaps = 15/191 (7%)
Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-- 60
           G   D +YDYL KL+ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  D +  
Sbjct: 1   GSMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 61  --------VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
                    V  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 120
Query: 113 EHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169
            +    +P+I+  LIGNK DL     V+    +  AE+  + + ETSA    NVE +   
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 170 VLTQIYKIVSK 180
           +L  I K + K
Sbjct: 179 LLDLIMKRMEK 189

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 113/191 (59%), Gaps = 15/191 (7%)
Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-- 60
           G   D +YDYL KL+ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  D +  
Sbjct: 1   GSMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 61  --------VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
                    V  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 120
Query: 113 EHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169
            +    +P+I+  LIGNK DL     V+    +  AE+  + + ETSA    NVE +   
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 170 VLTQIYKIVSK 180
           +L  I K + K
Sbjct: 179 LLDLIMKRMEK 189

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 107/161 (66%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV +G+  VGK+++++RF  + F+   +STIG++F +++L +D   V+ Q+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+N  +W++++      ++I+ L+GNKTDL  L
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
             V+ E+G   A++ +  F ETSA    N++  F +  +++
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 115/187 (61%), Gaps = 15/187 (8%)
Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEF-----ATRSLRI 57
           G   D +YDYL K + +GDSGVGK+++L ++T  +FN +  +T+G++F       R+   
Sbjct: 1   GSMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGP 60
Query: 58  DNKV-----VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
           D  V     +  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+
Sbjct: 61  DGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120
Query: 113 EHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169
            H    +P+I+  L GNK+DL    AV  E+ +  AE+  + + ETSA + TN+ +A   
Sbjct: 121 MHAYSENPDIV--LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEM 178
Query: 170 VLTQIYK 176
           +L  I K
Sbjct: 179 LLDLIMK 185

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  130 bits (326), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 110/181 (60%), Gaps = 15/181 (8%)
Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-------- 60
           +YDYL KL+ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  + +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 61  --VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHT--- 115
              V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +    
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 116 DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
           +P+I+  LIGNK DL     V+    +  A++  + + ETSA    NVE A   +L  I 
Sbjct: 141 NPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 198
Query: 176 K 176
           K
Sbjct: 199 K 199

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  130 bits (326), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 99/163 (60%)
Query: 12  YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
           Y FK+VL+G+  VGK++L+ R+ +N+FN +  +T+G  F T+ L I  K V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131
           QER+ A+   YYR + GA+LVYD+T   +FQ V  W++ELR+     I + ++GNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
               VS ++ +++AE        TSA     +E  F ++  ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ ID + +K Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 73  ERYR-AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPN-IIVMLIGNKTDL 130
           ER+R ++   YYR     + VYD+T  A+F ++  W+ E ++H   N I  +L+GNK DL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVS 179
           R  + V T+  + FA+  S+   ETSA +  + ++     +T  +K+ S
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 113/204 (55%), Gaps = 19/204 (9%)
Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-- 60
           G   D +YDYL KL+ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  D +  
Sbjct: 1   GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 61  --------VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
                    V  Q+WDTAG ER+R++T+A++R A G LL +D+T   +F NV  W  +L+
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 113 EHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169
            +    +P+I+  LIGNK DL     V+    +  AE+  + + ETSA    NVE +   
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 170 VLTQIY----KIVSKRAVEAGSNG 189
           +L  I     K V K  V    NG
Sbjct: 179 LLDLIXKRXEKCVEKTQVPDTVNG 202

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 15/191 (7%)
Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-- 60
           G   D +YDYL KL+ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  D +  
Sbjct: 1   GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 61  --------VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
                    V  Q+WDTAG ER+R++T+A++R A G LL +D+T   +F NV  W  +L+
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 113 EHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169
            +    +P+I+  LIGNK DL     V+    +  AE+  + + ETSA    NVE +   
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 170 VLTQIYKIVSK 180
           +L  I K   K
Sbjct: 179 LLDLIXKRXEK 189

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ + +D+++V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVMLIGNKT 128
           ER++++  A+YRGA   +LV+DVT   TF+ +  W  E      P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEV 170
           DL +   V+T+  +A+   + ++ + ETSA +A NVE AF  +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 97/169 (57%), Gaps = 6/169 (3%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +K+VL GD+ VGKS+ L R  KNEF     +T+GV+F  ++L +D +    Q+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R+I  +Y+R A G LL+YDVT   +F N+  W+  + +     + +ML+GNK D+R  
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 134 VA------VSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            A      V    G+  A      F ETSA D +N+  A   +  ++ K
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 99/169 (58%)
Query: 6   PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ 65
           P     Y FK+VL+G+  VGK++L+ R+ +N+FN +  +T+   F T+ L I  K V   
Sbjct: 13  PRGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLA 72
Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIG 125
           IWDTAGQER+ A+   YYR + GA+LVYD+T   +FQ V  W++ELR+     I + ++G
Sbjct: 73  IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 132
Query: 126 NKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           NK DL     VS ++ +++AE        TSA     +E  F ++  ++
Sbjct: 133 NKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ ID + +K Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 73  ERYR-AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPN-IIVMLIGNKTDL 130
           ER+R ++   YYR     + VYD T  A+F ++  W+ E ++H   N I  +L+GNK DL
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVS 179
           R  + V T+  + FA+  S    ETSA +  + ++      T  +K+ S
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKS 197

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ + +D+++V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVMLIGNKT 128
           ER++++  A+YRGA   +LV+DVT   TF+ +  W  E      P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEV 170
           DL +   V+T+  +A+   + ++ + ETSA +A NVE AF  +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  126 bits (317), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 98/163 (60%)
Query: 12  YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
           Y FK+VL+G+  VGK++L+ R+ +N+FN +  +T+   F T+ L I  K V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131
           QER+ A+   YYR + GA+LVYD+T   +FQ V  W++ELR+     I + ++GNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
               VS ++ +++AE        TSA     +E  F ++  ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 106/163 (65%), Gaps = 6/163 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ + +D+++V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVMLIGNKT 128
           ER++++  A+YRGA   +LV+DVT   TF+ +  W  E      P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEV 170
           D  +   V+T+  +A+   + ++ + ETSA +A NVE AF  +
Sbjct: 128 DFENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 106/163 (65%), Gaps = 6/163 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ + +D+++V  QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVMLIGNKT 128
           ER++++  A+YRGA   +LV+DVT   TF+ +  W  E      P    N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEV 170
           DL +   V+T+  +A+   + ++ + ETSA +A NVE AF  +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 103/165 (62%), Gaps = 7/165 (4%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAG 71
           + K++++GDSGVGK++L+ R+  ++++ + K+TIG +F T+ + +D +KV   Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPN----IIVMLIGNK 127
           QER++++  A+YRGA   +LVYDVT  ++F+N+  W  E   H + N       +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 128 TDLRHLVA-VSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEV 170
            D       VS +  +  A+    +    TSA +A NV+ AF E+
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 1/154 (0%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+V++G+  VGKS+++ R+ K  F  + K TIGV+F  R ++++++ V+  +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
            + AIT AYYRGA   +LV+  T   +F+ +  W RE       +I   L+ NK DL   
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLDD 124
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
             +  E+ +  A++  L F  TS  +  NV   F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 40/200 (20%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV------------ 61
           +K VL+G+S VGKS+++ R TK+ F+  + +TIG  F T  + +++              
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 62  -------------------------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96
                                    +K  IWDTAGQERY +I   YYRGA  A++V+D++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 97  RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETS 156
              T      W+ +L+     N I++L+ NK D ++   V   + + +A+  +L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 157 ALDATNVENAFTEVLTQIYK 176
           A   TN++N F  +  +IYK
Sbjct: 185 AKTGTNIKNIFYMLAEEIYK 204

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           +Y  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 134
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 135 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 166

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +   T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 123 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 154

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +   T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 3/176 (1%)
Query: 1   MAGYKPDEEYDY-LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN 59
           MA  KP  +    L K++++G  GVGKS L  +F  +EF +E       +   + + +D 
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG 59
Query: 60  KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPN 118
           + V+  I DTAGQE Y AI   Y+R   G L V+ +T   +F     +  + LR   D N
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119
Query: 119 IIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           +  +L+GNK+DL     VS E+ K  AEQ ++ ++ETSA    NV+  F +++ +I
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++ +DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLR 131
           E Y AI   Y+R   G L V+ +T   +F     +  + LR   D N+  +L+GNK+DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
               VS E+ K  AEQ ++ ++ETSA    NV+  F +++ +I
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLR 131
           E Y AI   Y+R   G L V+ +T   +F     +  + LR   D N+  +L+GNK+DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
               VS E+ K  AEQ ++ ++ETSA    NV+  F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 125
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 126 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 157

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 131
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 132 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 163

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    E   +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 134
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A S      F  +++L + + SA    N E  F
Sbjct: 135 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 166

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 83/155 (53%), Gaps = 5/155 (3%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +TIGVE    S   +   +K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D++  
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 131
Query: 134 -VAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            V   T     F  +++L + + SA    N E  F
Sbjct: 132 KVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF 163

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLR 131
           E Y AI   Y+R   G L V+ +T   +F     +  + LR   D N+  +L+GNK+DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
               VS E+ K  A+Q ++ ++ETSA    NV+  F +++ +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +TIGVE    S   +   +K  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 123
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A +      F  +++L + + SA    N E  F
Sbjct: 124 KVKAKTI----TFHRKKNLQYYDISAKSNYNFEKPF 155

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +TIGVE    S   +   +K  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
           ++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 124
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
            + A +      F  +++L + + SA    N E  F
Sbjct: 125 KVKAKTI----TFHRKKNLQYYDISAKSNYNFEKPF 156

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV-VKAQIWDTAGQ 72
            K+V++GD   GK++L + F +  F  + K TIG++F  R + +   + V  QIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRW---LRELREHTDPNIIVMLIGNKTD 129
                +   Y  GA G LLVYD+T + +F+N+  W   ++++ E ++   +V L+GNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
           L H+  +  E    F ++        SA    +V   F +V  +I  I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 2/163 (1%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLR 131
           E Y AI   Y+R   G L V+ +T   +F     +  + LR   D N+  +L+GNK+DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
               VS E+ K  AEQ ++ ++ETSA    NV+  F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG-VEFATRSLRIDNKVVKAQI 66
           E  +  +K+ LIGD GVGK+  ++R     F     +T+G V      L     V+K  +
Sbjct: 6   ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQE+   +   YY GA GA+L +DVT   T QN+ RW++E +        +++  N
Sbjct: 66  WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATN 162
           K D+++   +S +      + ++  + E SA  A N
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVML-IGNKTDL 130
           E Y AI   Y+R   G LLV+ +T H +F     +  + LR   + + I +L +GNK+DL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
                V  E+ ++ AE+  + ++ETSA    NV+  F +++ +I
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVML-IGNKTDL 130
           E Y AI   Y+R   G LLV+ +T H +F     +  + LR   + + I +L +GNK+DL
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
                V  E+ ++ AE+  + ++ETSA    NV+  F +++ +I
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y     +L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y     +L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y     +L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 125
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 180

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y     +L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 12/182 (6%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ +D ++V   +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR 131
           E Y  +    YRGA   +L + +   A+++NV  +W+ ELR    PN+ ++L+G K DLR
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 126
Query: 132 --------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA 182
                   H   +++  G+   +Q  +  ++E S+    NV+  F   +  + +   ++ 
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 186
Query: 183 VE 184
           V 
Sbjct: 187 VP 188

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYK 176
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  + K
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D+K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+++NV  +W  E+R H  P+  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVL 171
                       L  ++   G A A++ +S+ ++E SAL    ++  F E +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 173

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KL + G +GVGKS L+ RF    F  E   T+   +  ++  ID++VV  +I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRHL 133
                  + R   G +LVYD+T   +F+ V      L E   P N+ ++L+GNK DL H 
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
             VSTE+G+  A + +  F E SA      E   TE+  ++ + V +R
Sbjct: 148 RQVSTEEGEKLATELACAFYECSACTG---EGNITEIFYELCREVRRR 192

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D+K V   +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 68
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+++NV  +W  E+R H  P+  ++L+G K DLR 
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 127
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++ +S+ ++E SAL    ++  F E +  +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F+ E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 72
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 131
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D+K V   +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 69
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+++NV  +W  E+R H  P+  ++L+G K DLR 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 128
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++ +S+ ++E SAL    ++  F E +  +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 26  KSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F ++ F  +   TI   + T+   ID++  +  I DTAGQE + A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 86  AVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF 144
             G LLV+ VT   +F+ + ++ R+ LR        ++LIGNK DL H   V+ E+G+  
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 145 AEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
           A Q  + +ME SA    NV+ AF E++  I K 
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 69
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 89
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 81
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  P+  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A E  S+ ++E SAL    ++  F E +  +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  P+  ++L+G K DLR 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A E  S+ ++E SAL    ++  F E +  +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  P+  ++L+G K DLR 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A E  S+ ++E SAL    ++  F E +  +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F +  F  E   TI   +  + + +D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
           ++ A+   Y +   G  LVY +T  +TF ++ + LRE  LR     ++ ++L+GNK DL 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
               V  E G+  A Q  +  F+E+SA    NV   F +++ QI
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ +D   V   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR 131
           E Y  +    YRGA   +L + +   A+++NV  +W+ ELR H  P + ++L+G K DLR
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
Query: 132 H----------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAF 167
                       V ++T  G+   +   S  ++E S+    NV+  F
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N    E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 89
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K VL+GD  VGK++L+  +T N +  E   T    F+   + +D + V+ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDE 80
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL 133
           +  +    Y      LL + V   ++FQNV  +W+ E+R H  P   ++L+G ++DLR  
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 134 V------------AVSTEDGKAFAEQ-ESLYFMETSALDATNVENAF 167
           V             V  E  K  AE+ ++  ++E SAL   N++  F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F +  F  +   TI   +  + + +D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
           ++ A+   Y +   G  LVY +T  +TF ++ + LRE  LR     ++ ++L+GNK DL 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTDDVPMILVGNKCDLE 121
Query: 132 HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
               V  E G+  A Q  +  F+E+SA    NV   F +++ QI
Sbjct: 122 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 3/164 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++  +  +++   D  ++ ++L+GNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              V T+  +  A    + F+ETSA     V++AF  ++ +I K
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++  +  +++   D  ++ ++L+GNK+DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              V T+  +  A    + F+ETSA     V++AF  ++ +I K
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 89
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                       L  ++   G A A++  ++ ++E SAL    ++  F E +  +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F +  F  +   TI   +  + + +D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
           ++ A+   Y +   G  LVY +T  +TF ++ + LRE  LR     ++ ++L+GNK DL 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
               V  E G+  A Q  +  F+E+SA    NV   F +++ QI
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F +  F  +   TI   +  + + +D +    +I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
           ++ A+   Y +   G  LVY +T  +TF ++ + LRE  LR     ++ ++L+GNK DL 
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTDDVPMILVGNKCDLE 123
Query: 132 HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
               V  E G+  A Q  +  F+E+SA    NV   F +++ QI
Sbjct: 124 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 35/194 (18%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 74  RYRAITSAYYRGAVGA-------------------LLVYDVTRHATFQNV-GRWLRELRE 113
            Y  +    Y   VG                    L+ + +   A+F+NV  +W  E+R 
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 114 HTDPNIIVMLIGNKTDLR------------HLVAVSTEDGKAFAEQ-ESLYFMETSALDA 160
           H  PN  ++L+G K DLR             L  ++   G A A++  ++ ++E SAL  
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 161 TNVENAFTEVLTQI 174
             ++  F E +  +
Sbjct: 184 RGLKTVFDEAIRAV 197

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           DE    L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIG 125
           WDTAG E Y  +    Y      L+ + +   A+F +V  +W  E+R H  PN  ++L+G
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKTDLR------------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLT 172
            K DLR             L  ++   G A A++  ++ ++E SAL    ++  F E + 
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326
Query: 173 QI 174
            +
Sbjct: 327 AV 328

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           DE    L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIG 125
           WDTAG E Y  +    Y      L+ + +   A+F +V  +W  E+R H  PN  ++L+G
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKTDLR------------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLT 172
            K DLR             L  ++   G A A++  ++ ++E SAL    ++  F E + 
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326
Query: 173 QI 174
            +
Sbjct: 327 AV 328

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           DE    L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ +D K V   +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIG 125
           WDTAG E Y  +    Y      L+ + +   A+F +V  +W  E+R H  PN  ++L+G
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKTDLR------------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLT 172
            K DLR             L  ++   G A A++  ++ ++E SAL    ++  F E + 
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326
Query: 173 QI 174
            +
Sbjct: 327 AV 328

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ +D   V   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR 131
           E Y  +    YRGA   LL + +   A+++N+  +WL EL+ H  P I ++L+G K DLR
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLR 123

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K+EF      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V    + +N+  +W+ E++ H  PN+ ++L+ NK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 132 -HL---------VAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
            H+           V T+DG+A A +   Y ++E SA     V   F
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+VL+GD G GK++LL  F    F  ES +    E    +L++  K V   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +   +Y  A   LL +DVT   +F N+  RW  E+  H    + ++++G KTDLR  
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 133 -----------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
                      L  V+   G+  A    ++ ++E SA    NV   F E
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
             K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ ++   V   +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR 131
           E Y  +    YRGA   +L + +   A+++NV  +W+ EL+ H  P + ++L+G K DLR
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLR 125

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V +E+G+  A + S + ++E SA     V   F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           + K V++GD  VGK+ LL  +  + F  E   T+   +A  S+ +  K     ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR 131
           E Y  +    Y      L+ + V   A+FQNV   W+ EL+E+  PN+  +LIG + DLR
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 132 HLV------------AVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
                           +  E G+  A++  +  ++E SAL    ++  F E +  I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V +E+G+  A + S + ++E SA     V   F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 2/164 (1%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V++G   VGK++L  +F + EF+     T+   + ++ + +        + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKTDLRHL 133
           Y  +  ++  G  G +LVY VT   +FQ +    ++L E H    + V+L+GNK DL   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
             V   +GK  AE     FME+SA +    +  FT+V+ +I ++
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++GD GVGKS L  +F +  F  E   TI   +   +  IDN+     + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 77
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
            + A+   Y R   G L+VY VT  A+F++V R+ +  LR     +  ++L+ NK DL H
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEVLTQI 174
           L  V+ + GK  A + ++ ++ETSA D   NV+  F +++  I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++GD GVGKS L  +F +  F  E   TI   +   +  IDN+     + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQE 77
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
            + A+   Y R   G L+VY VT  A+F++V R+ +  LR     +  ++L+ NK DL H
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEVLTQI 174
           L  V+ + GK  A + ++ ++ETSA D   NV+  F +++  I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F K+ F      T+  E  T S  ID + ++  +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           Y  +    Y  +   L+ +D++R  T  +V  +W  E++E   PN  ++L+G K+DLR  
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 147
Query: 134 VA------------VSTEDGKAFAEQ-ESLYFMETSALDATN 162
           V+            VS + G   A+Q  +  ++E SAL + N
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F K+ F      T+  E  T S  ID + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           Y  +    Y  +   L+ +D++R  T  +V  +W  E++E   PN  ++L+G K+DLR  
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126
Query: 134 VA------------VSTEDGKAFAEQ-ESLYFMETSALDATN 162
           V+            VS + G   A+Q  +  ++E SAL + N
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F K+ F      T+  E  T S  ID + ++  +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           Y  +    Y  +   L+ +D++R  T  +V  +W  E++E   PN  ++L+G K+DLR  
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 142
Query: 134 VA------------VSTEDGKAFAEQ-ESLYFMETSALDATN 162
           V+            VS + G   A+Q  +  ++E SAL + N
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++GD GVGKS L  +F +  F  +   TI   +   +  IDN+     + DTAGQE
Sbjct: 14  YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 72
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
            + A+   Y R   G L+VY VT  A+F++V R+ +  LR     +  ++L+ NK DL H
Sbjct: 73  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEVLTQI 174
           L  V+ + GK  A + ++ ++ETSA D   NV+  F +++  I
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++GD GVGKS L  +F +  F  +   TI   +   +  IDN+     + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 77
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
            + A+   Y R   G L+VY VT  A+F++V R+ +  LR     +  ++L+ NK DL H
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEVLTQI 174
           L  V+ + GK  A + ++ ++ETSA D   NV+  F +++  I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH 132
           Y       Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 123

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL   +K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL   +K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL   +K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL   +K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL   +K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL   +K++F      T+  E     + +D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V +E+G+  A + S + ++E SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F + +F      TI   F T+ + ++ +    Q+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV----GRWLRELREHTDPNIIVMLIGNKTDL 130
           Y      Y     G +LVY VT   +F+ +    G+ L  + +   P   +ML+GNK DL
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP---IMLVGNKKDL 118
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
                +S E+GKA AE  +  F+E+SA +     + F  ++ +  KI
Sbjct: 119 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKI 165

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 8/163 (4%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F + +F   +  TI   F T+ + ++ +    Q+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV----GRWLRELREHTDPNIIVMLIGNKTDL 130
           Y      Y     G +LVY VT   +F+ +    G+ L  + +   P   +ML+GNK DL
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP---IMLVGNKKDL 121
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173
                +S E+GKA AE  +  F+E+SA +     + F  ++ +
Sbjct: 122 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F + +F      TI   F T+ + ++ +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV----GRWLRELREHTDPNIIVMLIGNKTDL 130
           Y      Y     G +LVY VT   +F+ +    G+ L  + +   P   +ML+GNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP---IMLVGNKKDL 123
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
                +S E+GKA AE  +  F+E+SA +     + F  ++ +  K+
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F + +F      TI   F T+ + ++ +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV----GRWLRELREHTDPNIIVMLIGNKTDL 130
           Y      Y     G +LVY VT   +F+ +    G+ L  + +   P   +ML+GNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP---IMLVGNKKDL 123
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
                +S E+GKA AE  +  F+E+SA +     + F  ++ +  K+
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKL 170

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 26  KSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F    F  +   TI  +F  + + +D+     +I DTAG E++ ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 86  AVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA 143
             G +LVY +    +FQ++ + +R+  +R      + V+L+GNK DL     VS+ +G+A
Sbjct: 75  GQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA 133
Query: 144 FAEQESLYFMETSALDATNVENAFTEVLTQI 174
            AE+    FMETSA   T V+  F E++ Q+
Sbjct: 134 LAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 13/173 (7%)
Query: 15  KLVLIGDSGVGKSNLLSRFTK--NEFNLESKSTIGVEFATRSLRIDNKVVKAQIW--DTA 70
           K+ ++G++ VGKS L+S FT   ++F  +   T GVE     + I +  V  +++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRW---LRELREHTDPNIIVMLIGNK 127
           G + Y+   S Y+ G   A+LV+DV+   +F++   W   L+  R   +  +  +L+ NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 128 TDL---RHLVAVSTEDGKAFAEQESLYFMETSA-LDATNVENAFTEVLTQIYK 176
           TDL   RH V +     + +A   +L F + SA     + +  F  + T  Y+
Sbjct: 142 TDLPPQRHQVRLDM--AQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL   +K++F      T+  E     + +D K V+  +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + +    + +N+  +W  E++ H  PN+ ++L+GNK DLR+ 
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
                         V  E+G+  A +   + +ME SA     V   F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFT-KNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
           L+++VL+GD GVGK++L S F  K E +L  +  +G +   R+L +D +     + DT  
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 72  QERYRAITS--AYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKT 128
            E+     S  +  +G    ++VY +    +F++      +LR  H   ++ ++L+GNK 
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
           DL     VS E+G+A A      F+ETSA    NV   F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 132
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR 
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 122
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                          ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR 
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                          ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                          ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR 
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                          ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 126
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR 
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                          ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                          ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKS-TIGVEFATRSLRIDNK---VVKAQIWDT 69
           +++VLIG+ GVGKS L + F     +++S    +G +   R+L +D +   ++   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERY-----RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVML 123
            G+  +       +  AY       L+VY +T  A+F+       +LR      +I ++L
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           +GNK+DL     VS  +G+A A      F+ETSA    NV+  F  ++ Q+
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 7/166 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKS-TIGVEFATRSLRIDNK---VVKAQIWDT 69
           +++VLIG+ GVGKS L + F     +++S    +G +   R+L +D +   ++   +W+ 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKT 128
            G+  +  +     +     L+VY +T  A+F+       +LR      +I ++L+GNK+
Sbjct: 98  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           DL     VS  +G+A A      F+ETSA    NV+  F  ++ Q+
Sbjct: 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 26  KSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F ++ F  +   TI   + T+   +D    +  I DTAGQE + A+   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 86  AVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF 144
             G LLV+ +    +F  VG+   + LR     +  V+L+GNK DL     V   +  AF
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 145 AEQESLYFMETSALDATNVENAFTEVLTQIYK 176
                + + E SA    NV+ AF +++  + K
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                          ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++  +  +++   D  ++ ++L+GNK+DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              V T+  +  A    + F+ETSA     V++AF  ++ +I K
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++  +  +++   D  ++ ++L+GNK+DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              V T+  +  A    + F+ETSA     V++AF  ++ +I K
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E    +   +A  ++ I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLVL+GD   GK+ +L    K+ +  E+      E  T  L  + + V+  +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQN-VGRWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y  +   LL +D++R  T  + + +W  E+ ++  P+  V+LIG KTDLR  
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 130
Query: 132 ----------HLVAVSTEDGKAFAEQ 147
                         +S E G A A+Q
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQ 156

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLVL+GD   GK+ +L    K+ +  E+      E  T  L  + + V+  +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQN-VGRWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y  +   LL +D++R  T  + + +W  E+ ++  P+  V+LIG KTDLR  
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 129
Query: 132 ----------HLVAVSTEDGKAFAEQ 147
                         +S E G A A+Q
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQ 155

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 7/166 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNK---VVKAQIWDT 69
           +++VLIG+ GVGKS L + F     +++S    +G +   R+L +D +   ++   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKT 128
            G+  +  +     +     L+VY +T  A+F+       +LR      +I ++L+GNK+
Sbjct: 67  KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           DL     VS  +G+A A      F+ETSA    NV+  F  ++ Q+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLVL+GD   GK+ +L    K+ +  E+      E  T  L  + + V+  +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQN-VGRWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y  +   LL +D++R  T  + + +W  E+ ++  P+  V+LIG KTDLR  
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 146
Query: 132 ----------HLVAVSTEDGKAFAEQ 147
                         +S E G A A+Q
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQ 172

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+   E   T+   +A  ++ I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                          ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNK---VVKAQIWDT 69
           +++VLIG+ GVGKS L + F     +++S    +G +   R+L +D +   ++   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERY-----RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVML 123
            G+  +       +  AY       L+VY +T  A+F+       +LR      +I ++L
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           +GNK+DL     VS  +G+A A      F+ETSA    NV+  F  ++ Q+
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F ++  +  +++   D + + M L+GNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V T+     A+   + F+ETSA     VE+AF  ++ +I
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR 
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                          ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ I  +     ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
           Y  +    Y      L+ + V   ++F+NV  +W+ E+  H  P    +L+G + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
                         ++ E  +  A + +++ ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID ++    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK+DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 3/160 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +++ + G  GVGKS+L+ RF K  F      T+   +  + +  D  +   QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLR 131
           ++ A+           +LVY +T   + + +     ++ E      +I +ML+GNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171
               V + + +A A      FMETSA    NV+  F E+L
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+V++GD  VGK+ LL  F+K E       T+   F +  ++  N+     +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR 131
            Y  +    Y  +   LL + V    +F N+  +W  E++ + D    V L+G K DLR
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 140

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI  E   + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+V++GD  VGK+ LL  F+K E       T+   F +  ++  N+     +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR 131
            Y  +    Y  +   LL + V    +F N+  +W  E++ + D    V L+G K DLR
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 139

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 69
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 128
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 129 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++  +  +++   D  ++ ++L+GNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              V T+  +  A    + F+ETSA     V++AF  ++ +I K
Sbjct: 141 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 183

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   +I   +  + + ID +     I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQE 68
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 127
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 128 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           ++K++L+G  GVGKS L   F   E   E+++  G  +  RS+ +D +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE--HTDPNIIVMLIGNKTDL 130
           +  R +           ++VY VT   +F+       +LR    TD ++ ++L+GNK+DL
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 123
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
                VS ++G+A A      F+ETSA    NV+  F  V+ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GN+ DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
              V +   +  A    + ++ETSA     VE+AF
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   +I   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           ++K++L+G  GVGKS L   F   E   E+++  G  +  RS+ +D +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 59
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE--HTDPNIIVMLIGNKTDL 130
           +  R +           ++VY VT   +F+       +LR    TD ++ ++L+GNK+DL
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 118
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
                VS ++G+A A      F+ETSA    NV+  F  V+ QI
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           ++K++L+G  GVGKS L   F   E   E+++  G  +  RS+ +D +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE--HTDPNIIVMLIGNKTDL 130
           +  R +           ++VY VT   +F+       +LR    TD ++ ++L+GNK+DL
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 123
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
                VS ++G+A A      F+ETSA    NV+  F  V+ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGK+ L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  +   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  +   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGKE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 128 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGVE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL   +K +F      T+  E     + +D + V+  +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y  +   L+ + +    + +NV  +W+ E+  H    + ++L+G K DLR+ 
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 133 -----------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAF 167
                         V++++G++ A+Q  +  + E SA     V   F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGIE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
              A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETXLLDILDTAGGE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D + + M L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              V +   +  A    + ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK---VVKAQ 65
           + D +FK++L+G+SGVGKS L   F   + +   +     +   R + +D +   +V   
Sbjct: 19  QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD 78
Query: 66  IW---DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR---EHTDPNI 119
           IW   D  G  R   + +         L+V+ VT   +F  V   L  LR    H D  +
Sbjct: 79  IWEQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--L 131
Query: 120 IVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
            V+L+GNK+DL     VS E+G+  A   S   +ETSA    N    F   + QI
Sbjct: 132 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 6   PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ 65
           P++  DY  ++V+ G  GVGKS+L+ RF K  F      TI   +  + +  D  V   Q
Sbjct: 3   PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQ 59
Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVG---RWLRELREHTDPNIIVM 122
           I DT G  ++ A+           +LV+ VT   + + +G   + + +++   + +I VM
Sbjct: 60  ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVM 118
Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172
           L+GNK D      V T + +A A++    FMETSA    NV+  F E+LT
Sbjct: 119 LVGNKCDETQR-EVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           D +FK++L+G+SGVGKS L   F   + +   +     +   R + +D + V   ++D  
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 71  GQERYRA-ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR---EHTDPNIIVMLIGN 126
            Q      +     +     L+V+ VT   +F  V   L  LR    H D  + V+L+GN
Sbjct: 70  EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGN 127
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           K+DL     VS E+G+  A   S   +ETSA    N    F   + QI
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           +FK++L+G+SGVGKS L   F   + +   +     +   R + +D + V   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 73  ERYRA-ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR---EHTDPNIIVMLIGNKT 128
                 +     +     L+V+ VT   +F  V   L  LR    H D  + V+L+GNK+
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGNKS 119
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           DL     VS E+G+  A   S   +ETSA    N    F   + QI
Sbjct: 120 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 16  LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75
           L ++G  G GKS L  +F    F  E    +   +++    +D++ V  ++ DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 76  RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREH---TDPNIIVMLIGNKTDLRH 132
           R     Y   A   L+VY V    +F +   +L  L  H   T  +I  +L+GNK D+  
Sbjct: 83  RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 133 LVAVSTEDGKAFAEQESLYFMETSA-LDATNVENAFTEVLTQ 173
              V+  +G A A +    F E SA LD  +V++ F E + +
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +L L+G    GK+  ++     +FN +   T+G  F  R +   N  +K  +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 78
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
           R+R++   Y RG    + + D       +     L  L +      I V+++GNK DL
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +L L+G    GK+  ++     +FN +   T+G  F  R +   N  +K  +WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
           R+R++   Y RG    + + D       +     L  L +      I V+++GNK DL
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E  + +  TIG    T    ++ K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLR------ELREHTDPNIIVMLIGNK 127
           R R +   Y++   G + V D       Q V   L+      ELR+      +++L  NK
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDA-----VLLLFANK 127
Query: 128 TDLRHLVAVS 137
            DL + +A+S
Sbjct: 128 QDLPNAMAIS 137

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G  G GK+ +L +    E  + +  TIG    T    +  K +   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 74  RYRAITSAYYRGAVGALLVYDV---TRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           R R++   YYR   G + V D    +R    + V +  R L E    N + ++  NK DL
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQ--RMLNEDELRNAVWLVFANKQDL 130

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +L L+G    GK+  ++     +F+ +   T+G  F  R +   N  +K  IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
           R+R++   Y RG    + + D       +     L  L +      I V+++GNK DL
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G  G GK+ +L +    E  + +  TIG    T    +  K +   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 74  RYRAITSAYYRGAVGALLVYDV---TRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           R R++   YYR   G + V D    +R    + V +  R L E    N   ++  NK DL
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQ--RMLNEDELRNAAWLVFANKQDL 113

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + ++ +  T+G    T    +  K VK  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 377
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
           + R +   YY G  G + V D           + L  +   RE  D   I+++  NK DL
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD--AIILIFANKQDL 435

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G  G GK+ +L +    E  + +  TIG    T    +  K +   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 74  RYRAITSAYYRGAVGALLVYDV---TRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           R R++   YYR   G + V D    +R    + V +  R L E    N   ++  NK DL
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQ--RMLNEDELRNAAWLVFANKQDL 130

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +L+++G    GK+ +L +F   + +  S  T+G    T    ++++  K  IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR-EHTDPNIIVMLIGNKTDL 130
             R+    Y+    G + V D       Q+  R L+ L  E       +++  NK DL
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +L+++G    GK+ +L +F   + +  S  T+G    T    ++++  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR-EHTDPNIIVMLIGNKTDL 130
             R+    Y+    G + V D       Q+  R L+ L  E       +++  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + ++ +  T+G    T    +  K VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
           + R +   YY G  G + V D           + L  +   RE  D   I+++  NK DL
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 125

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + ++ +  T+G    T    +  K VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
           + R +   YY G  G + V D           + L  +   RE  D   I+++  NK DL
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 113

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + ++ +  T+G    T    +  K VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
           + R +   YY G  G + V D           + L  +   RE  D   I+++  NK DL
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 113

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +L+++G    GK+ +L +F   + +  S  T+G    T    ++++  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR-EHTDPNIIVMLIGNKTDL 130
             R+    Y+    G + V D       Q+  R L+ L  E       +++  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + ++ +  T+G    T    +  K VK  +WD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 68
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
           + R +   YY G  G + V D           + L  +   RE  D   I+++  NK DL
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 126

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+++L +    E  + +  TIG    T    ++ K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 74  RYRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132
           + R +   YY+     + V D   R    +     ++ L E    N I+++  NK DL  
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 133 LVAVS 137
            +++S
Sbjct: 133 AMSIS 137

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E  + +  TIG    T    ++ K +   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
           + R +   Y++   G + V D       Q     L++ L+E    + ++++  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 133 LVAVS 137
            + VS
Sbjct: 145 AMPVS 149

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K++++G    GK+ +L +F+ NE  + +  TIG       + I+N   +  +WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQES 77
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDLRHL 133
            R+  + YY      ++V D T           L ++  H D     +LI  NK D++  
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 134 VAVS 137
           + V+
Sbjct: 138 MTVA 141

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G  G GK+ +L R    E  + +K TIG    T S     K +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQT 73
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLR-ELREHTDPNIIVMLIGNKTD 129
             R     YY      + V D T         + L   L+E    +  +++  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           +++ +G    GK+ +L +    + ++ +  T+G    T    +  K VK  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
            R +   YY G  G + V D           + L  +   RE  D   I+++  NK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDA--IILIFANKQDL 113

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K++++G    GK+ +L +F+ NE  + +  TIG       + I+N   +  +WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQES 78
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDLRHL 133
            R+  + YY      ++V D T           L ++  H D     +LI  NK D++  
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 134 VAVS 137
           + V+
Sbjct: 139 MTVA 142

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           + +L+++G    GK+ +L +F   + +  S  T+G    T    ++++  K  IWD  G 
Sbjct: 1   MLRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGL 55
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR-EHTDPNIIVMLIGNKTDL 130
           +  R+    Y+    G + V D       Q+  R L+ L  E       +++  NK DL
Sbjct: 56  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 114

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K++++G    GK+ +L +F+ NE  + +  TIG       + I+N   +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQES 72
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDLRHL 133
            R+  + YY      ++V D T           L ++  H D     +LI  NK D++  
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 134 VAVS 137
           + V+
Sbjct: 133 MTVA 136

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K++++G    GK+ +L +F+ NE  + +  TIG       + I+N   +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQES 72
Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDLRHL 133
            R+  + YY      ++V D T           L ++  H D     +LI  NK D++  
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 134 VAVS 137
           + V+
Sbjct: 133 MTVA 136

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 15  KLVLIGDSGVGKSNLLSRFT---KNEFNLESKSTIGVEFATRSLRIDNKVVK---AQIWD 68
           KL ++G++G GK+ LL +     K++   +S +T+G++     ++I +K  +     +WD
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQS-ATVGIDVKDWPIQIRDKRKRDLVLNVWD 60
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTR-HATFQNVGRWLREL--REHTDPNIIVMLIG 125
            AG+E + +    +       L VYD+++  A       WL  +  R  + P   V+L+G
Sbjct: 61  FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSP---VILVG 117
Query: 126 NKTDL 130
              D+
Sbjct: 118 THLDV 122

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E  + +  TIG    T    ++ K +   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 74  RYRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           + R +   Y++   G + V D   R    +     +R L E    + ++++  NK DL
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-121
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-118
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-118
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-117
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-117
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-116
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-116
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-116
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-114
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-114
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-114
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-114
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-113
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-113
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-112
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-112
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-111
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-111
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-111
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-111
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-111
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-111
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-110
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-110
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-110
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-110
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-109
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-109
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-109
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-108
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-108
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-108
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-108
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-108
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-107
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-106
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-106
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-106
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-105
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-103
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	4e-99
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	4e-99
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-92
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-87
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-85
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	9e-83
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-79
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	7e-79
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-78
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-77
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-76
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	7e-75
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-74
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	7e-74
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	7e-74
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	9e-74
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-69
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-68
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-67
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-66
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-66
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	5e-65
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	9e-64
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-63
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-63
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-63
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-62
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	7e-62
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-57
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	8e-57
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-50
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	8e-46
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-44
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	5e-43
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	8e-43
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	9e-43
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-41
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-41
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	6e-40
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-39
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-39
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-38
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-38
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-29
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	9e-26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-19
3llu_A	196	RAS-related GTP-binding protein C; structural geno	4e-15
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	9e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-11
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-11
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-11
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-11
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	8e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-10
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	5e-10
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	6e-10
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	6e-09
2fh5_B	214	SR-beta, signal recognition particle receptor beta	9e-08
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-07
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	3e-07
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-07
2ged_A	193	SR-beta, signal recognition particle receptor beta	7e-07
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  342 bits (880), Expect = e-121
 Identities = 125/223 (56%), Positives = 160/223 (71%), Gaps = 7/223 (3%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           M+      +YD LFK+VLIGDSGVGKSNLLSRFTKNEFN++SKSTIGVEFATR+L I+ K
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
            +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++ ++++N   WL ELRE+ D N+ 
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA 120

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           V LIGNK+DL HL AV TE+ K FA++  L F ETSAL++ NV+ AF E++  IY+ VSK
Sbjct: 121 VGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSK 180

Query: 181 RAVEAGSNGT----ASTLPSKGETINVKDDSSVLKRI---GCC 216
             ++ G +             G TI++    +  K+     CC
Sbjct: 181 HQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  332 bits (853), Expect = e-118
 Identities = 80/183 (43%), Positives = 114/183 (62%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
            E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QI
Sbjct: 4   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 63

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GN
Sbjct: 64  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
           K DL     V+  +   FA++  L F+ETSAL   NVE AF +   +I   +    ++  
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPE 183

Query: 187 SNG 189
             G
Sbjct: 184 RMG 186

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  332 bits (854), Expect = e-118
 Identities = 91/210 (43%), Positives = 132/210 (62%), Gaps = 5/210 (2%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           + EYDYLFKL+LIG+SGVGKS LL RF+ + +  +  STIGV+F  +++ +D K VK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  +    ++ +L+GN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
           K DL+    V  +  K FA+   + F+ETSALD+TNVE+AF  +  QI + +S++ +   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181

Query: 187 SNGTASTLPSKGETINVKDDSSVLKRIGCC 216
           +             +N+K  S       CC
Sbjct: 182 TQK-----KEDKGNVNLKGQSLTNTGGCCC 206

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  330 bits (848), Expect = e-117
 Identities = 85/176 (48%), Positives = 118/176 (67%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           +        Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + +  +
Sbjct: 3   LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
            +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN +
Sbjct: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV 122

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           ++LIGNK DL     V+ E+ K FAE+  L F+E SA    NVE+AF E   +IY+
Sbjct: 123 IILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  330 bits (847), Expect = e-117
 Identities = 129/187 (68%), Positives = 160/187 (85%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           YDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQERYR ITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNG 189
           LRHL AV T++ +AFAE+ +L F+ETSALD+TNVE AF  +LT+IY+IVS++ +   +  
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181

Query: 190 TASTLPS 196
             S   +
Sbjct: 182 DESPGNN 188

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  329 bits (845), Expect = e-116
 Identities = 108/177 (61%), Positives = 142/177 (80%)

Query: 5   KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKA 64
           +  E+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    VKA
Sbjct: 17  RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI 124
           QIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  V RWL+EL +H +  I+VML+
Sbjct: 77  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136

Query: 125 GNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
           GNK+DL     V TE+ + FAE   L F+ETSALD+TNVE AF  VL +I+  VSK+
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  328 bits (844), Expect = e-116
 Identities = 81/180 (45%), Positives = 113/180 (62%)

Query: 5   KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKA 64
           +     D+LFK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK 
Sbjct: 17  RGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKL 76

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI 124
           QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNI+V+L 
Sbjct: 77  QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILC 136

Query: 125 GNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 184
           GNK DL     V+  +   FA++  L F+ETSAL   NVE AF +    I   +    ++
Sbjct: 137 GNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  327 bits (841), Expect = e-116
 Identities = 127/169 (75%), Positives = 152/169 (89%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQI
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAG ERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GN
Sbjct: 83  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
           K+DLRHL AV T++ +AFAE+  L F+ETSALD+TNVE AF  +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  322 bits (828), Expect = e-114
 Identities = 90/174 (51%), Positives = 116/174 (66%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
                YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QI
Sbjct: 15  VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQI 74

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H+  N+++MLIGN
Sbjct: 75  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 134

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           K+DL     V  E+G+AFA +  L FMETSA  A NVE AF     +IY+ + +
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  322 bits (828), Expect = e-114
 Identities = 89/184 (48%), Positives = 120/184 (65%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           + EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QI
Sbjct: 10  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GN
Sbjct: 70  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
           K DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K +   A   G
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 189

Query: 187 SNGT 190
           +  +
Sbjct: 190 AEKS 193

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  323 bits (829), Expect = e-114
 Identities = 71/198 (35%), Positives = 116/198 (58%), Gaps = 3/198 (1%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
              +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +++  ++K +K QI
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAG ERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  V+L+GN
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
           K D+     VS+E G+  A+     F E SA D  NV+  F  ++  I + +S+    A 
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 181

Query: 187 SNGTASTLPSKGETINVK 204
              T      +G  +  +
Sbjct: 182 PAVTG---AKQGPQLTDQ 196

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  321 bits (826), Expect = e-114
 Identities = 73/173 (42%), Positives = 114/173 (65%)

Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
                  KLVL+GD G GKS+L+ RF K++F    +STIG  F +++L +++  VK +IW
Sbjct: 7   GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIW 66

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
           DTAGQERY ++   YYRGA  A++V+DVT  A+F+   +W++EL+   +PN+++ L GNK
Sbjct: 67  DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNK 126

Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           +DL     V+ ED + +A++  L+FMETSA  ATNV+  F E+  ++ ++   
Sbjct: 127 SDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 179

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  322 bits (827), Expect = e-113
 Identities = 73/184 (39%), Positives = 118/184 (64%)

Query: 5   KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKA 64
              E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ I+ + VK 
Sbjct: 18  GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKL 77

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI 124
           QIWDTAGQER+R+IT +YYR A   +L YD+T   +F+ +  WLRE+ ++    +I +L+
Sbjct: 78  QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLV 137

Query: 125 GNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 184
           GNK DL     VS +  + F+E + +Y++ETSA ++ NVE  F ++  ++     +  + 
Sbjct: 138 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLV 197

Query: 185 AGSN 188
              +
Sbjct: 198 NNVS 201

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  319 bits (821), Expect = e-113
 Identities = 85/181 (46%), Positives = 117/181 (64%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
            + YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QI
Sbjct: 2   AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GN
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
           K D+     VS E G+  A    + FMETSA    NVENAF  +   I   + K      
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATA 181

Query: 187 S 187
           +
Sbjct: 182 A 182

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  318 bits (818), Expect = e-112
 Identities = 70/175 (40%), Positives = 107/175 (61%)

Query: 6   PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ 65
                DY+FKL+LIG+S VGK++ L R+  + F     ST+G++F  +++   +K +K Q
Sbjct: 15  VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQ 74

Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIG 125
           IWDTAGQERYR IT+AYYRGA+G LL+YD+    +F  V  W  +++ ++  N  V+L+G
Sbjct: 75  IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVG 134

Query: 126 NKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           NK DL     V  EDG+  A+     F E SA +  NV+  F  ++  I + +++
Sbjct: 135 NKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  318 bits (817), Expect = e-112
 Identities = 79/207 (38%), Positives = 124/207 (59%), Gaps = 1/207 (0%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
            A     + YD + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K
Sbjct: 8   SASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK 67

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
            VK Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+ +W + + EH +    
Sbjct: 68  KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ 127

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           ++L+GNK+D+     V+ + G+A A++  + F+E+SA +  NV   F  +   I + +  
Sbjct: 128 LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 186

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDS 207
             +    NG    +     + N    +
Sbjct: 187 NKLVGVGNGKEGNISINSGSGNSSKSN 213

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  316 bits (812), Expect = e-111
 Identities = 84/176 (47%), Positives = 119/176 (67%), Gaps = 1/176 (0%)

Query: 2   AGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV 61
               PDE+YD+LFKLVL+GD+ VGK+ ++ RF    F+    STIGV+F  ++L I  K 
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIV 121
           VK QIWDTAGQER+R IT +YYR A GA+L YD+T+ ++F +V  W+ ++R++   NI+ 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137

Query: 122 MLIGNKTDLRHLVAVSTEDGKAFAEQE-SLYFMETSALDATNVENAFTEVLTQIYK 176
           +LIGNK+DL  L  VS  + ++ AE    L  +ETSA D++NVE AF  V T++  
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  315 bits (809), Expect = e-111
 Identities = 79/176 (44%), Positives = 111/176 (63%), Gaps = 1/176 (0%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQ 65
            + YD  FK++L+GDSGVGK+ LL RF    F   +  ST+G++F  + L +D   VK Q
Sbjct: 4   VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ 63

Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIG 125
           +WDTAGQER+R++T AYYR A   LL+YDVT  A+F N+  WL E+ E+   ++ +ML+G
Sbjct: 64  MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123

Query: 126 NKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
           NK D  H   V  EDG+  A++  L FMETSA    NV+ AFT +  ++ +   K 
Sbjct: 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  315 bits (809), Expect = e-111
 Identities = 67/179 (37%), Positives = 107/179 (59%)

Query: 2   AGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV 61
           +G  P        K+ L+GD+GVGKS+++ RF ++ F+     TIG  F T+++   N++
Sbjct: 12  SGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNEL 71

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIV 121
            K  IWDTAGQER+ ++   YYRG+  A++VYD+T+  +F  + +W++EL+EH   NI++
Sbjct: 72  HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVM 131

Query: 122 MLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
            + GNK DL  +  V  +D K +AE      +ETSA +A N+E  F  +  QI  +   
Sbjct: 132 AIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPH 190

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  315 bits (810), Expect = e-111
 Identities = 64/216 (29%), Positives = 119/216 (55%), Gaps = 9/216 (4%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           M+           FKLV +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++++
Sbjct: 4   MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 63

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
            V+ Q+WDTAG ER+R++  +Y R +  A++VYD+T   +FQ   +W+ ++R     ++I
Sbjct: 64  TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 123

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           +ML+GNKTDL     VS E+G+  A++ ++ F+ETSA    NV+  F  V   +  + S 
Sbjct: 124 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 183

Query: 181 RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC 216
           +               + + ++           GC 
Sbjct: 184 QDRSREDMIDIKLEKPQEQPVSEG---------GCL 210

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  314 bits (808), Expect = e-111
 Identities = 87/170 (51%), Positives = 115/170 (67%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           + EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QI
Sbjct: 27  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GN
Sbjct: 87  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           K DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  314 bits (807), Expect = e-111
 Identities = 81/192 (42%), Positives = 114/192 (59%), Gaps = 2/192 (1%)

Query: 2   AGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV 61
                DE+     K+++IG+SGVGKS+LL RFT + F+ E  +TIGV+F  +++ +D   
Sbjct: 4   GSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK 63

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIV 121
            K  IWDTAGQER+R +T +YYRGA G +LVYDVTR  TF  +  WL EL  +   N IV
Sbjct: 64  AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV 123

Query: 122 -MLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
            ML+GNK D      V   +G  FA + S+ F+E SA     V+ AF E++ +I +    
Sbjct: 124 NMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

Query: 181 RAVEAGSNGTAS 192
              E  ++G +S
Sbjct: 183 WESENQNSGPSS 194

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  313 bits (805), Expect = e-110
 Identities = 72/173 (41%), Positives = 107/173 (61%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
              +DY+FKL++IG+S VGK++ L R+  + F     ST+G++F  +++    K VK QI
Sbjct: 17  QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  V+L+GN
Sbjct: 77  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 136

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVS 179
           K D+     V TE G+  AEQ    F E SA +  +V  AF  ++  I   +S
Sbjct: 137 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  313 bits (805), Expect = e-110
 Identities = 65/177 (36%), Positives = 110/177 (62%), Gaps = 1/177 (0%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           +         D+  ++++IG  GVGK++L+ RFT + F    KST+GV+F  +++ +  K
Sbjct: 14  LVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK 73

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
            ++ QIWDTAGQER+ +ITSAYYR A G +LVYD+T+  TF ++ +W++ + ++   +  
Sbjct: 74  KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE 133

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYK 176
           ++L+GNK D      ++ + G+ FA+Q   + F E SA D  NV+  F +++  I K
Sbjct: 134 LLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  312 bits (801), Expect = e-110
 Identities = 64/167 (38%), Positives = 100/167 (59%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
             Y FK+VL+G+  VGK++L+ R+ +N+FN +  +T+G  F T+ L I  K V   IWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQER+ A+   YYR + GA+LVYD+T   +FQ V  W++ELR+     I + ++GNK D
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L     VS ++ +++AE        TSA     +E  F ++  ++ +
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  311 bits (800), Expect = e-110
 Identities = 82/178 (46%), Positives = 111/178 (62%), Gaps = 1/178 (0%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
             +YD+LFKL++IGDSGVGKS+LL RF  N F+    +TIGV+F  R++ I+ + VK QI
Sbjct: 3   ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+ ++ D ++  +L+GN
Sbjct: 63  WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGN 121

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 184
           K D      V TED   FA Q  +   ETSA +  NVE  F  +   + +       +
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAK 179

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  310 bits (796), Expect = e-109
 Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 6/182 (3%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
             G          +K+VL GD+ VGKS+ L R  KNEF     +T+GV+F  ++L +D +
Sbjct: 16  PRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGE 75

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
               Q+WDTAGQER+R+I  +Y+R A G LL+YDVT   +F N+  W+  + +     + 
Sbjct: 76  RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP 135

Query: 121 VMLIGNKTDLRHLV------AVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           +ML+GNK D+R          V    G+  A      F ETSA D +N+  A   +  ++
Sbjct: 136 IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

Query: 175 YK 176
            K
Sbjct: 196 KK 197

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  308 bits (792), Expect = e-109
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 4/176 (2%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV-VKAQIWD 68
           +    K+V++GD   GK++L + F +  F  + K TIG++F  R + +   + V  QIWD
Sbjct: 3   HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWD 62

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE---HTDPNIIVMLIG 125
             GQ     +   Y  GA G LLVYD+T + +F+N+  W   +++    ++   +V L+G
Sbjct: 63  IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG 122

Query: 126 NKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
           NK DL H+  +  E    F ++        SA    +V   F +V  +I  I   +
Sbjct: 123 NKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  309 bits (794), Expect = e-109
 Identities = 67/189 (35%), Positives = 114/189 (60%), Gaps = 11/189 (5%)

Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID---- 58
           G   D +YDYL K + +GDSGVGK+++L ++T  +FN +  +T+G++F  + +       
Sbjct: 1   GSMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGP 60

Query: 59  ------NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
                  + +  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+
Sbjct: 61  DGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120

Query: 113 EHTDP-NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171
            H    N  ++L GNK+DL    AV  E+ +  AE+  + + ETSA + TN+ +A   +L
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

Query: 172 TQIYKIVSK 180
             I K + +
Sbjct: 181 DLIMKRMER 189

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  308 bits (791), Expect = e-108
 Identities = 68/163 (41%), Positives = 104/163 (63%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+ L+GD+GVGKS+++ RF ++ F+     TIG  F T++++  N++ K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+RA+   YYRG+  A++VYD+T+  TF  +  W+RELR+H  P+I+V + GNK DL  +
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
             V   D K +A+     F+ETSA +A N+   F E+  +I  
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  309 bits (794), Expect = e-108
 Identities = 69/199 (34%), Positives = 114/199 (57%), Gaps = 11/199 (5%)

Query: 5   KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV--- 61
           +   +YDYL KL+ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  + +    
Sbjct: 17  RGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 76

Query: 62  -------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREH 114
                  V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +
Sbjct: 77  SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136

Query: 115 TDP-NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173
               N  ++LIGNK DL     V+    +  A++  + + ETSA    NVE A   +L  
Sbjct: 137 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196

Query: 174 IYKIVSKRAVEAGSNGTAS 192
           I K + +   +     T +
Sbjct: 197 IMKRMEQCVEKTQIPDTVN 215

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  308 bits (792), Expect = e-108
 Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 14/214 (6%)

Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
                L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ + +D+++V  QIW
Sbjct: 3   SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVML 123
           DTAGQER++++  A+YRGA   +LV+DVT   TF+ +  W  E      P    N   ++
Sbjct: 63  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122

Query: 124 IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 183
           +GNK DL +    +         + ++ + ETSA +A NVE AF  +     K  ++  +
Sbjct: 123 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182

Query: 184 EAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 217
                          E I +  +         CS
Sbjct: 183 Y----------NEFPEPIKLDKNERAKASAESCS 206

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  306 bits (786), Expect = e-108
 Identities = 73/165 (44%), Positives = 108/165 (65%)

Query: 12  YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
             FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131
           QERY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           +  AV  ++ +++A+  SL FMETSA  + NV   F  +  ++ K
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  306 bits (786), Expect = e-108
 Identities = 62/177 (35%), Positives = 112/177 (63%), Gaps = 1/177 (0%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           M+           FKLV +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++++
Sbjct: 3   MSS-GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 61

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
            V+ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F    +W+ ++R     ++I
Sbjct: 62  TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI 121

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
           +ML+GNKTDL     VSTE+G+  A++ ++ F+ETSA    NV+  F  V   +  +
Sbjct: 122 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 178

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  304 bits (780), Expect = e-107
 Identities = 74/170 (43%), Positives = 114/170 (67%), Gaps = 1/170 (0%)

Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
           GQER+R IT+AYYRGA+G +LVYD+T   TF N+ +W + + EH +    ++L+GNK+D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
                V+ + G+A A++  + F+E+SA +  NV   F  +   I + +  
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  305 bits (782), Expect = e-106
 Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 6/212 (2%)

Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVE-FATRSLRIDNKV 61
           G    E  +  +K+ LIGD GVGK+  ++R     F     +T+G        L     V
Sbjct: 1   GPGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNV 60

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIV 121
           +K  +WDTAGQE+   +   YY GA GA+L +DVT   T QN+ RW++E +        +
Sbjct: 61  IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI 120

Query: 122 MLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK----- 176
           ++  NK D+++   +S +      + ++  + E SA  A N    F  +           
Sbjct: 121 VVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLI 180

Query: 177 IVSKRAVEAGSNGTASTLPSKGETINVKDDSS 208
            VS   +E          P + + I+  + +S
Sbjct: 181 FVSNVNLEPTEVNYDYHSPEESKYIDYMEQAS 212

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  303 bits (778), Expect = e-106
 Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 5/179 (2%)

Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVV 62
              P      +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ ID + +
Sbjct: 10  SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69

Query: 63  KAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPN-II 120
           K Q+WDTAGQER+R ++   YYR     + VYD+T  A+F ++  W+ E ++H   N I 
Sbjct: 70  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 129

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL---DATNVENAFTEVLTQIYK 176
            +L+GNK DLR  + V T+  + FA+  S+   ETSA    D  +VE  F  +  ++  
Sbjct: 130 RILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  301 bits (774), Expect = e-106
 Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 1/167 (0%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
            +   K+V++G+  VGKS+++ R+ K  F  + K TIGV+F  R ++++++ V+  +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQE + AIT AYYRGA   +LV+  T   +F+ +  W  ++      +I   L+ NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L     +  E+ +  A++  L F  TS  +  NV   F  +  +  +
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  299 bits (769), Expect = e-105
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 9/193 (4%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTK--NEFNLESKSTIGVEFATRSLRIDNKVVKA 64
           D       K+ ++G++ VGKS L+S FT   ++F  +   T GVE     + I +  V  
Sbjct: 14  DITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV 73

Query: 65  QIW--DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE---HTDPNI 119
           +++  DTAG + Y+   S Y+ G   A+LV+DV+   +F++   W   L+      +  +
Sbjct: 74  ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL 133

Query: 120 IVMLIGNKTDLRHL-VAVSTEDGKAFAEQESLYFMETSA-LDATNVENAFTEVLTQIYKI 177
             +L+ NKTDL      V  +  + +A   +L F + SA     + +  F  + T  Y+ 
Sbjct: 134 RAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRN 193

Query: 178 VSKRAVEAGSNGT 190
              +         
Sbjct: 194 YEDKVAAFQDACR 206

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  295 bits (758), Expect = e-103
 Identities = 68/173 (39%), Positives = 103/173 (59%), Gaps = 6/173 (3%)

Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
               LFK++L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + L +D   V  QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVMLI 124
           TAGQER+R++ + +YRG+   LL + V    +FQN+  W +E   + D     +   +++
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 125 GNKTDLRHLVAVSTEDGKAFAEQE-SLYFMETSALDATNVENAFTEVLTQIYK 176
           GNK D+     VSTE+ +A+        + ETSA DATNV  AF E + ++  
Sbjct: 123 GNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  284 bits (729), Expect = 4e-99
 Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 7/176 (3%)

Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQI 66
                + K++++GDSGVGK++L+ R+  ++++ + K+TIG +F T+ + +D +KV   Q+
Sbjct: 3   SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVM 122
           WDTAGQER++++  A+YRGA   +LVYDVT  ++F+N+  W  E   H +         +
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122

Query: 123 LIGNKTDLRHLV-AVSTEDGKAFAEQE-SLYFMETSALDATNVENAFTEVLTQIYK 176
           ++GNK D       VS +  +  A+    +    TSA +A NV+ AF E+     +
Sbjct: 123 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  286 bits (733), Expect = 4e-99
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 4/185 (2%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MA      E    FKLVL+GD G GK+  + R    EF  +  +T+GVE        +  
Sbjct: 4   MAS-AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 62

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
            +K  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L    + NI 
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIP 121

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
           ++L GNK D++            F  +++L + + SA    N E  F  +  ++    + 
Sbjct: 122 IVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

Query: 181 RAVEA 185
             V  
Sbjct: 180 EFVAM 184

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  268 bits (687), Expect = 2e-92
 Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 40/207 (19%)

Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKA---- 64
           E    +K VL+G+S VGKS+++ R TK+ F+  + +TIG  F T  + +++  +K     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 65  ---------------------------------QIWDTAGQERYRAITSAYYRGAVGALL 91
                                             IWDTAGQERY +I   YYRGA  A++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 92  VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY 151
           V+D++   T      W+ +L+     N I++L+ NK D      V   + + +A+  +L 
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKIS--SNYIIILVANKIDKNKF-QVDILEVQKYAQDNNLL 179

Query: 152 FMETSALDATNVENAFTEVLTQIYKIV 178
           F++TSA   TN++N F  +  +IYK +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYKNI 206

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  254 bits (652), Expect = 4e-87
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 2/174 (1%)

Query: 5   KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKA 64
               + D +FK++L+G+SGVGKS L   F   + +   +     +   R + +D + V  
Sbjct: 15  YFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTL 74

Query: 65  QIWDTAGQERYRA-ITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL-REHTDPNIIVM 122
            ++D   Q      +     +     L+V+ VT   +F  V   L  L       ++ V+
Sbjct: 75  VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 134

Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L+GNK+DL     VS E+G+  A   S   +ETSA    N    F   + QI  
Sbjct: 135 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  249 bits (638), Expect = 2e-85
 Identities = 68/166 (40%), Positives = 99/166 (59%), Gaps = 3/166 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            KLVL+G++ VGKS+++ RF  N+F    + TIG  F T+ + I+   VK +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+ ++   YYR A  AL+VYDVT+  +F     W++EL E    +II+ L+GNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 134 V---AVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
                V+ E+G+  AE++ L F ETSA    NV + F  +  +I  
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  242 bits (621), Expect = 9e-83
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 2/166 (1%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           +FK++L+G+SGVGKS L   F   + +   +     +   R + +D + V   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 73  ERYRA-ITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL-REHTDPNIIVMLIGNKTDL 130
                 +     +     L+V+ VT   +F  V   L  L       ++ V+L+GNK+DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
                VS E+G+  A   S   +ETSA    N    F   + QI  
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  235 bits (601), Expect = 3e-79
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 16/218 (7%)

Query: 1   MAGYKP-DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN 59
           MA  KP  +    L K++++G  GVGKS L  +F  +EF  + + T    +  + + +D 
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59

Query: 60  KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPN 118
           + V+  I DTAGQE Y AI   Y+R   G L V+ +T   +F     +  + LR   D N
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119

Query: 119 IIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIV 178
           +  +L+GNK+DL     VS E+ K  AEQ ++ ++ETSA    NV+  F +++ +I    
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179

Query: 179 SKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC 216
            + + E        +L  +              R  CC
Sbjct: 180 MEDSKEKNGKKKRKSLAKR-------------IRERCC 204

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  233 bits (597), Expect = 7e-79
 Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 2/176 (1%)

Query: 2   AGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV 61
            G    +    L K++++G  GVGKS L  +F  +EF  + + T    +  + + +D + 
Sbjct: 7   GGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEE 65

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNII 120
           V+  I DTAGQE Y AI   Y+R   G L V+ +T   +F     +  + LR   D N+ 
Sbjct: 66  VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 125

Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            +L+GNK+DL     VS E+ K  AEQ ++ ++ETSA    NV+  F +++ +I  
Sbjct: 126 FLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  232 bits (594), Expect = 1e-78
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 4/167 (2%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L+++VL+GD GVGK++L S F   +   +    +G +   R+L +D +     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 73  ERYRAITS--AYYRGAVGALLVYDVTRHATFQNVGRWLREL-REHTDPNIIVMLIGNKTD 129
           E+     S  +  +G    ++VY +    +F++      +L R H   ++ ++L+GNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L     VS E+G+A A      F+ETSA    NV   F  V+ Q+  
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRL 169

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  230 bits (589), Expect = 2e-77
 Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 7/175 (4%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNK---VV 62
            E  +  +++VLIG+ GVGKS L + F     +++S    +G +   R+L +D +   ++
Sbjct: 31  SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATII 90

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIV 121
              +W+  G+  +  +     +     L+VY +T  A+F+       +LR      +I +
Sbjct: 91  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148

Query: 122 MLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           +L+GNK+DL     VS  +G+A A      F+ETSA    NV+  F  ++ Q+  
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 203

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  226 bits (578), Expect = 2e-76
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 2/165 (1%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++G  GVGKS L  +F  +EF  + + T    +  + + +D + V+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLR 131
           E Y AI   Y+R   G L V+ +T   +F     +  + LR   D N+  +L+GNK+DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
               VS E+ K  A+Q ++ ++ETSA    NV+  F +++ +I  
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  223 bits (570), Expect = 7e-75
 Identities = 35/177 (19%), Positives = 76/177 (42%), Gaps = 11/177 (6%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNL--ESKSTIGVEFATRSLRIDNK---VVKAQIWD 68
            KL+++G++G GK+ LL +  K + +      +T+G++     ++I +K    +   +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
            AG+E + +    +       L VYD++   A    +  WL  ++     +  V+L+G  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTH 121

Query: 128 TDL---RHLVAVSTEDGKAFAEQESL-YFMETSALDATNVENAFTEVLTQIYKIVSK 180
            D+   +   A  ++  K    +       +   ++AT   +A  ++   I      
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  221 bits (565), Expect = 2e-74
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 3/165 (1%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           ++K++L+G  GVGKS L   F   E   E+    G  +  RS+ +D +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLR 131
           +  R +           ++VY VT   +F+       +LR      ++ ++L+GNK+DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
               VS ++G+A A      F+ETSA    NV+  F  V+ QI  
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  220 bits (563), Expect = 7e-74
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 2/171 (1%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           D       KLV++G  GVGKS L  +F ++ F  +   TI   + T+   +D    +  I
Sbjct: 3   DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDI 61

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIG 125
            DTAGQE + A+   Y R   G LLV+ +    +F  VG+   + LR     +  V+L+G
Sbjct: 62  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121

Query: 126 NKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           NK DL     V   +  AF     + + E SA    NV+ AF +++  + K
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  221 bits (565), Expect = 7e-74
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 2/173 (1%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
                K+V++G   VGK++L  +F + EF+     T+   + ++ + +        + DT
Sbjct: 21  LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDT 79

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKT 128
           AGQ+ Y  +  ++  G  G +LVY VT   +FQ +    ++    H    + V+L+GNK 
Sbjct: 80  AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139

Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
           DL     V   +GK  AE     FME+SA +    +  FT+V+ +I ++ +  
Sbjct: 140 DLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSY 192

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  220 bits (563), Expect = 9e-74
 Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 7/179 (3%)

Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNK---VVK 63
           E     +++VLIG+ GVGKS L + F     +++S    +G +   R+L +D +   ++ 
Sbjct: 1   EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60

Query: 64  AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVM 122
             +W+  G+  +  +     +     L+VY +T  A+F+       +LR      +I ++
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118

Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
           L+GNK+DL     VS  +G+A A      F+ETSA    NV+  F  ++ Q+      +
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  208 bits (533), Expect = 3e-69
 Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 3/178 (1%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MA      E    +KLV++GD GVGKS L  +F +  F  +   TI   +  +   IDN+
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQ 64

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NI 119
                + DTAGQE + A+   Y R   G L+VY VT  A+F++V R+ + +    D  + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124

Query: 120 IVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEVLTQIYK 176
            ++L+ NK DL HL  V+ + GK  A + ++ ++ETSA D   NV+  F +++  I +
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  205 bits (525), Expect = 4e-68
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 2/179 (1%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
                K+ ++G   VGKS+L  +F + +F      TI   F T+ + ++ +    Q+ DT
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKT 128
           AGQ+ Y      Y     G +LVY VT   +F+ +     + L       I +ML+GNK 
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121

Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGS 187
           DL     +S E+GKA AE  +  F+E+SA +     + F  ++ +  K+    +    S
Sbjct: 122 DLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKSS 180

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  205 bits (523), Expect = 2e-67
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 4/191 (2%)

Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           E    +++V+ G  GVGKS+L+ RF K  F      TI   +  + +  D  V   QI D
Sbjct: 4   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITD 62

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE--HTDPNIIVMLIGN 126
           T G  ++ A+           +LV+ VT   + + +G   + + +   +  +I VML+GN
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
           K D      V T + +A A++    FMETSA    NV+  F E+LT   +      ++  
Sbjct: 123 KCDETQRE-VDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGK 181

Query: 187 SNGTASTLPSK 197
            +G        
Sbjct: 182 RSGKQKRTDRV 192

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  201 bits (514), Expect = 2e-66
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 3/165 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +++ + G  GVGKS+L+ RF K  F      T+   +  + +  D  +   QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLR 131
           ++ A+           +LVY +T   + + +     ++ E      +I +ML+GNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
               V + + +A A      FMETSA    NV+  F E+L    +
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  200 bits (512), Expect = 2e-66
 Identities = 50/164 (30%), Positives = 87/164 (53%), Gaps = 3/164 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D  ++ ++L+GNK+DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              V +   +  A    + ++ETSA     VE+AF  ++ +I +
Sbjct: 123 RT-VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  197 bits (504), Expect = 5e-65
 Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 2/164 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F    F  +   TI  +F  + + +D+     +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
           ++ ++   Y +   G +LVY +    +FQ++     + +R      + V+L+GNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              VS+ +G+A AE+    FMETSA   T V+  F E++ Q+  
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  195 bits (497), Expect = 9e-64
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 3/177 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++  +  +  R     ++ ++L+GNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNG 189
              V T+  +  A    + F+ETSA     V++AF  ++ +I K   K + +     
Sbjct: 124 RT-VDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKK 179

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  194 bits (496), Expect = 1e-63
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 7/166 (4%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDL-- 130
            Y A+   Y R   G L V+ +    +F ++  +  +++   D  ++ ++L+GNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           R    V T+     A+   + F+ETSA     VE+AF  ++ +I +
Sbjct: 141 R---TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  193 bits (494), Expect = 1e-63
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 3/165 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F +  F  +   TI   +  + + +D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
           ++ A+   Y +   G  LVY +T  +TF ++     + LR     ++ ++L+GNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 133 LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYK 176
              V  E G+  A Q  +  F+E+SA    NV   F +++ QI +
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  193 bits (493), Expect = 4e-63
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 6/170 (3%)

Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
                L ++G  G GKS L  +F    F  E    +   + +    +D++ V  ++ DTA
Sbjct: 19  PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTA 77

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREH---TDPNIIVMLIGNK 127
             +  R     Y   A   L+VY V    +F +   +L  L  H   T  +I  +L+GNK
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136

Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSA-LDATNVENAFTEVLTQIYK 176
            D+     V+  +G A A +    F E SA LD  +V++ F E + +  +
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  192 bits (490), Expect = 1e-62
 Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 4/175 (2%)

Query: 4   YKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVK 63
           Y          KL + G +GVGKS L+ RF    F  E   T+   +      ID++VV 
Sbjct: 19  YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVS 77

Query: 64  AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVM 122
            +I DTAGQE        + R   G +LVYD+T   +F+ V      L E   P N+ ++
Sbjct: 78  MEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI 136

Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA-LDATNVENAFTEVLTQIYK 176
           L+GNK DL H   VSTE+G+  A + +  F E SA     N+   F E+  ++ +
Sbjct: 137 LVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  200 bits (510), Expect = 7e-62
 Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 12/184 (6%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSL----- 55
                    +    K+ LIGD   GK++LL +     F+ +   T G+   T+       
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 56  ---RIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
                + K      WD  GQE   A    +   +   +L+ D     T  N   WLR + 
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE 145

Query: 113 EHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172
           ++      V+++ NK D      +  +            F   S  +   VE+    + +
Sbjct: 146 KYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204

Query: 173 QIYK 176
            +  
Sbjct: 205 AVLH 208

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  178 bits (455), Expect = 1e-57
 Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 13/179 (7%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
             +L ++GD+  GKS+L+ RF    +    + T   ++  + + +D +     I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREH-----TDPNIIVMLIGNK 127
              +     +   A   + V+ +    +FQ V R   +L            + ++   ++
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 128 TDLRHLVAVSTEDGKAF-AEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEA 185
                   V     +A  A+ +   + ET A    NV+  F EV  ++  +  ++ + A
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  177 bits (451), Expect = 8e-57
 Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 11/167 (6%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+ ++G+   GKS L+ R+    +  + +S  G  F  + + +D +     I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLR- 131
             +     +       + V+ +    +FQ V  +   L    +   + ++L+G +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 132 -HLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQIYK 176
            +   +     +  +       + ET A    NVE  F +V  ++  
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  160 bits (406), Expect = 6e-50
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 6/171 (3%)

Query: 3   GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVV 62
           G    E      K+V++GD  VGK+ LL  F+K E       T+   F+   ++  N+  
Sbjct: 13  GAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEF 71

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIV 121
              +WDTAGQE Y  +    Y  +   LL + V    +F N+  +W  E++ +       
Sbjct: 72  ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKT 130

Query: 122 MLIGNKTDLRH--LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
           +L+G K DLR      V+ ++G    ++   + ++E S++    +   F +
Sbjct: 131 VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  149 bits (378), Expect = 8e-46
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 14/168 (8%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ ++   V   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH 132
            Y  +    YRGA   +L + +   A+++NV  +W+ EL+ +  P + ++L+G K DLR 
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRD 126

Query: 133 ----------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
                      V ++T  G+   +   +  ++E S+    NV+  F  
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  147 bits (373), Expect = 1e-44
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 16/170 (9%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+VL+GD G GK++LL  F    F      T+   +    L++  K V   IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH 132
            Y  +   +Y  A   LL +DVT   +F N+  RW  E+       + ++++G KTDLR 
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRK 152

Query: 133 ------------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
                       L  V+   G+  A    ++ ++E SA    NV   F E
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  143 bits (362), Expect = 5e-43
 Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ +D ++V   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
            Y  +    YRGA   +L + +   A+++NV  +W+ ELR    PN+ ++L+G K DLR 
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127

Query: 132 -------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYK 176
                  H   +++  G+   +Q  +  ++E S+    NV+  F   +  + +
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  142 bits (359), Expect = 8e-43
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 16/169 (9%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV++GD   GK+ LL  F+K+EF      T+   +    + +D K V+  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y      L+ + V    + +N+  +W+ E++    PN+ ++L+ NK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144

Query: 133 -----------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
                         V T+DG+A A + ++  ++E SA     V   F  
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  142 bits (359), Expect = 9e-43
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 16/179 (8%)

Query: 5   KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKA 64
           +         KLV++GD   GK+ LL  F+K++F      T+  E     + +D K V+ 
Sbjct: 17  RGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVEL 75

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVML 123
            +WDTAGQE Y  +    Y      L+ + +    + +N+  +W  E++    PN+ ++L
Sbjct: 76  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIIL 134

Query: 124 IGNKTDLRH------------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
           +GNK DLR                V +E+G+  A +  +  ++E SA     V   F  
Sbjct: 135 VGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 193

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  138 bits (350), Expect = 2e-41
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 17/178 (9%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           D   +   K+V++GDS  GK+ LL  F K+ F      T+   +   S  ID + ++  +
Sbjct: 22  DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSL 80

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIG 125
           WDT+G   Y  +    Y  +   L+ +D++R  T  +V  +W  E++E   PN  ++L+G
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 139

Query: 126 NKTDLRH------------LVAVSTEDGKAFAEQ-ESLYFMETSALDATN-VENAFTE 169
            K+DLR                VS + G   A+Q  +  ++E SAL + N V + F  
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 197

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  138 bits (350), Expect = 2e-41
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 16/170 (9%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ +D K V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH 132
            Y  +    Y      L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148

Query: 133 ------------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
                       L  ++   G A A++  ++ ++E SAL    ++  F E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  134 bits (338), Expect = 6e-40
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 17/170 (10%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F K+ F      T+   +   S  ID + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           Y  +    Y  +   L+ +D++R  T  +V  +W  E++E   PN  ++L+G K+DLR  
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126

Query: 134 VA------------VSTEDGKAFAEQ-ESLYFMETSALDATN-VENAFTE 169
           V+            VS + G   A+Q  +  ++E SAL + N V + F  
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  133 bits (337), Expect = 1e-39
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ +D K V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
           Y  +    Y     +L+ + +   A+F+NV  +W  E+R H  PN  ++L+G K DLR  
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124

Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTE 169
                      L  ++   G A A++     ++E SAL    ++  F E
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  133 bits (337), Expect = 2e-39
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 16/170 (9%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K VL+GD  VGK++L+  +T N +  E   T   +  +  + +D + V+ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL 133
           +  +    Y      LL + V   ++FQNV  +W+ E+R H  P   ++L+G ++DLR  
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139

Query: 134 VA------------VSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEV 170
           V             V  E  K  AE+ ++  ++E SAL   N++  F   
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAA 189

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  131 bits (330), Expect = 2e-38
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 17/180 (9%)

Query: 5   KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKA 64
           +  +      KLVL+GD   GK+ +L    K+ +      T+   +    L  + + V+ 
Sbjct: 19  RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVEL 77

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVML 123
            +WDT+G   Y  +    Y  +   LL +D++R  T  +   +W  E+ ++  P+  V+L
Sbjct: 78  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLL 136

Query: 124 IGNKTDLRH------------LVAVSTEDGKAFAEQ-ESLYFMETSALDA-TNVENAFTE 169
           IG KTDLR                +S E G A A+Q  +  ++E SA  +  ++ + F  
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  129 bits (327), Expect = 4e-38
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 16/173 (9%)

Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
             + K V++GD  VGK+ LL  +  + F  E   T+  +    S+ +  K     ++DTA
Sbjct: 16  ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 74

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTD 129
           GQE Y  +    Y      L+ + V   A+FQNV   W+ EL+E+  PN+  +LIG + D
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQID 133

Query: 130 LRH------------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
           LR                +  E G+  A++  +  ++E SAL    ++  F E
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  109 bits (273), Expect = 2e-29
 Identities = 43/222 (19%), Positives = 73/222 (32%), Gaps = 66/222 (29%)

Query: 20  GDSGVGKSNLLSRFTK---NEFNLESKSTIG-VEFATRSLRIDN--------------KV 61
           G  G+GKS L +RF +   +EF+L+  S +   +F  R +  D+                
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 62  VKAQIW-------DTAGQERYRAITSAYYRGAV--------------------------- 87
            K  I        D   Q         Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 88  ----------GALLVYDVTRHA--TFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRHLV 134
                     G LL  DV+R     F +  +++  L          ++++  K D     
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 135 AVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            +      A + +++L  +ETSA    NV+ AF+ ++  I K
Sbjct: 215 YIRDAHTFALS-KKNLQVVETSARSNVNVDLAFSTLVQLIDK 255

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  101 bits (252), Expect = 9e-26
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 16/179 (8%)

Query: 5   KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKA 64
             DE    L K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ +D K V  
Sbjct: 147 NIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNL 205

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVML 123
            +WDTAG E Y  +    Y      L+ + +   A+F +V  +W  E+R H  PN  ++L
Sbjct: 206 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIIL 264

Query: 124 IGNKTDLRH------------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
           +G K DLR             L  ++   G A A++  ++ ++E SAL    ++  F E
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 81.3 bits (201), Expect = 2e-19
 Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 19/186 (10%)

Query: 14  FKLVLIGDSGVGKSNLL----------SRFTKNEFNLESKSTIGVEFATRSLR-IDNKVV 62
           FK+V  G    GK+  L           +        E + T+  +F    +  +     
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR----EHTDPN 118
           +  ++   GQ  Y A      RG  G + V D   +    N                  +
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 119 IIVMLIG-NKTDLRHLVAVSTED-GKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            + ++I  NK DL    A+  E        +     +E  A +   V     EV   +  
Sbjct: 135 DVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192

Query: 177 IVSKRA 182
            V+  +
Sbjct: 193 RVAGGS 198

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 70.0 bits (171), Expect = 4e-15
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 24/179 (13%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLES---KSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
           +++L+G    GKS++           E+   +ST  +     S    +  V  QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISN---SSFVNFQIWDFPG 78

Query: 72  QERYRAITS---AYYRGAVGALLVYDVTRHAT--FQNVGRWLRELREHTDPNIIVMLIGN 126
           Q  +   T      +RG    + V D           +   + +  +  +P++   +  +
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIH 137

Query: 127 KTDL----------RHLVAVSTED-GKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           K D           R +   + +D   A  E+  L F  TS  D + +  AF++V+ ++
Sbjct: 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFEAFSKVVQKL 195

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 63.9 bits (155), Expect = 2e-12
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 23/181 (12%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESK---STIGVEFATRSLRIDNKVVKAQIWDTAG 71
           KL+L+G SG GKS++ S    N    +++   +TI VE +          +   +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDCGG 61

Query: 72  QERYRAIT-----SAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE--HTDPNIIVMLI 124
           Q+ +            ++     + V+DV      +++  + + L++     P+  + ++
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 125 GNKTDLRH--LVAVSTEDGKAFAEQESL-------YFMETSALDATNVENAFTEVLTQIY 175
            +K DL          +       + S            TS  D + +  A+++++  + 
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDES-LYKAWSQIVCSLI 180

Query: 176 K 176
            
Sbjct: 181 P 181

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 60.7 bits (148), Expect = 9e-12
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 16/174 (9%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +L L+G    GK+  ++     +FN +   T+G  F  R +   N  V  ++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRH 132
           R+R++   Y RG    + + D       +     L  L +      I V+++GNK DL  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138

Query: 133 LVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQIYKIVSKR 181
             A+  ++        ++          S  +  N++      L  + +    R
Sbjct: 139 --ALDEKELIEKMNLSAIQDREICCYSISCKEKDNID----ITLQWLIQHSKSR 186

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 38/185 (20%), Positives = 75/185 (40%), Gaps = 26/185 (14%)

Query: 10  YDYLF-----KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG--VEFATRSLRIDNKVV 62
           +  +F     +++++G    GK+ +L +    E    +  TIG  VE       ++ K +
Sbjct: 21  FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYKNI 73

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM 122
              +WD  GQ++ R +   Y++   G + V D       Q     L+++ +  +    V+
Sbjct: 74  CFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL 133

Query: 123 LI-GNKTDLRHLVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQIYK 176
           L+  NK D+ +  A+   +       + L     Y   T A   T +     + L  +  
Sbjct: 134 LVFANKQDMPN--AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY----DGLDWLSH 187

Query: 177 IVSKR 181
            +SKR
Sbjct: 188 ELSKR 192

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 17/178 (9%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+++L R    +    +  T+G      +L+  N  +  ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVG--VNLETLQYKN--ISFEVWDLGGQT 77

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRH 132
             R     Y+      + V D T           L  L +  +    ++++  NK DL  
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137

Query: 133 LVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQIYKIVSKRAVEA 185
             A S  +        S+       +++S+     +     E +  + + + ++ + A
Sbjct: 138 --AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV----EGMDWLVERLREQGLGA 189

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 17/176 (9%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG--VEFATRSLRIDNKVVKAQIWDTAG 71
            K++++G    GK+ +L +F+ NE    +  TIG  VE       I     +  +WD  G
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE------EIVINNTRFLMWDIGG 69

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
           QE  R+  + YY      ++V D T           L ++  H D     +++  NK D+
Sbjct: 70  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129

Query: 131 RHLVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQIYKIVSKR 181
           +    ++  +   F +  S+     +     AL    +      +++++   +   
Sbjct: 130 KE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEHH 183

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 21/176 (11%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG--VEFATRSLRIDNKVVKAQIWDTAG 71
            +++++G  G GK+ +L R    E    +K TIG  VE       +  K +K  +WD  G
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVE------TLSYKNLKLNVWDLGG 71

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDL 130
           Q   R     YY      + V D T         + L  + +  +     +L+  NK D 
Sbjct: 72  QTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131

Query: 131 RHLVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQIYKIVSKR 181
               A+S  +         L       + +SA+    +     E L  +  ++ + 
Sbjct: 132 PG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT----EGLDWLIDVIKEE 181

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 21/176 (11%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG--VEFATRSLRIDNKVVKAQIWDTAG 71
            +L+++G    GK+ +L +F   + +     T+G  ++       ++++  K  IWD  G
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK------TLEHRGFKLNIWDVGG 71

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
           Q+  R+    Y+    G + V D       Q+  R L+ L          +++  NK DL
Sbjct: 72  QKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

Query: 131 RHLVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQIYKIVSKR 181
               A+S    +   E +S+          SA+   ++       +  +   +S R
Sbjct: 132 PG--ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL----PGIDWLLDDISSR 181

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 57.6 bits (140), Expect = 8e-11
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 17/174 (9%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G  G GK+ +L R    E    +  TIG  F   ++   N  +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWDLGGLT 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRH 132
             R     YY      + V D             L  + E  +    I+++  NK D+  
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 133 LVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQIYKIVSKR 181
             A+++ +        +L        +TSA   T ++    E +  + + +  R
Sbjct: 123 --AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLD----EAMEWLVETLKSR 170

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 17/162 (10%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG--VEFATRSLRIDNKVVKAQIWDTAG 71
            K++++G    GK+ +L +F+ NE    +  TIG  VE       I     +  +WD  G
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE------EIVINNTRFLMWDIGG 74

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
           QE  R+  + YY      ++V D T           L ++  H D     +++  NK D+
Sbjct: 75  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134

Query: 131 RHLVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAF 167
           +    ++  +   F +  S+     +     AL    +    
Sbjct: 135 KE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 55.7 bits (135), Expect = 5e-10
 Identities = 32/179 (17%), Positives = 68/179 (37%), Gaps = 23/179 (12%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKS-TIG--VEFATRSLRIDNKVVKAQIWDTA 70
             ++ +G    GK+ ++++   +    ++   TIG  +E      +  +  +   ++D +
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE------KFKSSSLSFTVFDMS 75

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD---PNIIVMLIGNK 127
           GQ RYR +   YY+     + V D +           L  L  H D     I ++   NK
Sbjct: 76  GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANK 135

Query: 128 TDLRHLVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQIYKIVSKR 181
            DLR   AV++         E++     +   + A+    ++    E +  +   +   
Sbjct: 136 MDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQ----EGVDWLQDQIQTV 188

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 54.9 bits (133), Expect = 6e-10
 Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 17/170 (10%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG--VEFATRSLRIDNKVVKAQIWDTAGQ 72
           +++++G    GK+ +L +    E    +  TIG  VE       ++ K +   +WD  GQ
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYKNISFTVWDVGGQ 54

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLR 131
           ++ R +   Y++   G + V D             L  +    +  + ++++  NK DL 
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114

Query: 132 HLVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQIYK 176
           +  A++  +        SL     Y   T A     +      +  Q+  
Sbjct: 115 N--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 21/176 (11%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG--VEFATRSLRIDNKVVKAQIWDTAG 71
            +++L+G    GK+ LL +    + +     T G  ++       + ++  K  +WD  G
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIK------SVQSQGFKLNVWDIGG 69

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
           Q + R    +Y+      + V D      F+  G+ L EL E      + V++  NK DL
Sbjct: 70  QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129

Query: 131 RHLVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQIYKIVSKR 181
               A    +        ++          SAL    V+    + +  + K V+ +
Sbjct: 130 LT--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ----DGMNWVCKNVNAK 179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 6e-09
 Identities = 43/220 (19%), Positives = 80/220 (36%), Gaps = 43/220 (19%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVE-FATRSLRIDNKVVKAQ 65
            EE D++          V  +  L  F      L SK    V+ F    LRI+ K + + 
Sbjct: 48  KEEIDHIIMS----KDAVSGTLRL--FWT----LLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 66  IWDTAGQERYRA---ITSAY--YR----GAVGALLVYDVTRHATFQNVGRWLRELREHTD 116
           I     +   R    +T  Y   R            Y+V+R   +  + + L ELR    
Sbjct: 98  I-----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-- 150

Query: 117 PNIIV--ML-IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173
            N+++  +L  G KT +   V +S +       +  ++++    L   N      E+L +
Sbjct: 151 KNVLIDGVLGSG-KTWVALDVCLSYKVQCKMDFK--IFWLN---LKNCNSPETVLEMLQK 204

Query: 174 IYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRI 213
           +   +         N T+ +  S    + +    + L+R+
Sbjct: 205 LLYQIDP-------NWTSRSDHSSNIKLRIHSIQAELRRL 237

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 53.9 bits (129), Expect = 6e-09
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 28/180 (15%)

Query: 16  LVLIGDSGVGKSNLLSRFTKNEFNLESK---STIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           ++L+G    GKS++      N   L++    ST        S  ID       + +  GQ
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDL-----AVMELPGQ 56

Query: 73  ERYRA---ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD---PNIIVMLIGN 126
             Y      +   ++     + V D      + N    L  + E+     P+I + ++ +
Sbjct: 57  LNYFEPSYDSERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIH 114

Query: 127 KTDL----------RHLVAVSTED-GKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
           K D           R ++  + E+  +   +   + F  TS  D + +  AF+ ++ ++ 
Sbjct: 115 KVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS-IYEAFSRIVQKLI 173

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 49.7 bits (119), Expect = 9e-08
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
            ++ +G    GK+ L  R    ++  +++++I    A   +  +N+     + D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHES 66

Query: 75  YRA-ITSAYYRGAVGALLVYD-VTRHATFQNVGRWLRELREHTD--PNIIVMLI-GNKTD 129
            R  +   +   A   + V D        ++V  +L ++   +    N   +LI  NK D
Sbjct: 67  LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 126

Query: 130 L 130
           +
Sbjct: 127 I 127

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 21/180 (11%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG--VEFATRSLRIDNKVVKAQIW 67
                +++++G    GK+ +L +    E    +  TIG  VE       ++ K +   +W
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYKNISFTVW 214

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGN 126
           D  GQ++ R +   Y++   G + V D             L  +    +  + ++++  N
Sbjct: 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 274

Query: 127 KTDLRHLVAVSTEDGKAFAEQESL-----YFMETSALDATNVENAFTEVLTQIYKIVSKR 181
           K DL +  A++  +        SL     Y   T A     +     E L  +   +  +
Sbjct: 275 KQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY----EGLDWLSNQLRNQ 328

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KL+ +G    GK+ LL     +      + T      +  L I N  +K   +D  G  +
Sbjct: 25  KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--PTSEELAIGN--IKFTTFDLGGHIQ 79

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHL 133
            R +   Y+    G + + D      F      L  L    +  ++  +++GNK D  + 
Sbjct: 80  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN- 138

Query: 134 VAVSTED 140
            AVS  +
Sbjct: 139 -AVSEAE 144

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 8/127 (6%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLV +G    GK+ LL     +    +   T+     +  L I    +    +D  G  +
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELTIAG--MTFTTFDLGGHIQ 81

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHL 133
            R +   Y     G + + D   H         L  L       N+ ++++GNK D    
Sbjct: 82  ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE- 140

Query: 134 VAVSTED 140
            A+S E 
Sbjct: 141 -AISEER 146

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
            +++ G    GK++LL+  T +     +  +     +      D       + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQE-PLSA----ADYDGSGVTLVDFPGHVK 103

Query: 75  YRAITSAYYRGAVGAL--LVYDV---TRHATFQNVGRWLREL---REHTDPNIIVMLI-G 125
            R   S Y +     +  L++ V              +L ++    E +  N I +LI  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 126 NKTDL 130
           NK++L
Sbjct: 164 NKSEL 168

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 15/124 (12%)

Query: 16  LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75
           +++ G    GK++LL+  T +     +  +     +      D       + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQE-PLSA----ADYDGSGVTLVDFPGHVKL 68

Query: 76  RAITSAYYRGAVGAL--LVYDV---TRHATFQNVGRWLREL---REHTDPNIIVMLI-GN 126
           R   S Y +     +  L++ V              +L ++    E +  N I +LI  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 127 KTDL 130
           K++L
Sbjct: 129 KSEL 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-56
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	7e-56
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-54
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-53
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-53
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	4e-52
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	5e-51
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-50
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-48
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-47
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	7e-47
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	6e-46
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-44
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-42
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	8e-42
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	8e-41
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	7e-39
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	9e-39
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-38
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	5e-37
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-36
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-36
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	4e-36
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-35
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-35
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-34
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-34
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-34
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-34
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	7e-32
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	7e-32
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-31
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-31
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-31
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	5e-31
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	5e-31
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-29
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-28
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-28
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-28
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-27
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-26
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-25
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-25
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	5e-25
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-24
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-24
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-24
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-22
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-22
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-20
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-20
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	6e-20
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-19
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-16
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	3e-14
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-08
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	8e-08
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-07
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	6e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	3e-04
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	5e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	0.002
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.004

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  175 bits (443), Expect = 2e-56
 Identities = 128/174 (73%), Positives = 157/174 (90%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           YDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQERYR ITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 183
           LRHL AV T++ +AFAE+ +L F+ETSALD+TNVE AF  +LT+IY+IVS++ +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  173 bits (439), Expect = 7e-56
 Identities = 85/173 (49%), Positives = 116/173 (67%)

Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
           + YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIW
Sbjct: 1   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
           DTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK
Sbjct: 61  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 120

Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
            D+     VS E G+  A    + FMETSA    NVENAF  +   I   + K
Sbjct: 121 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  170 bits (430), Expect = 4e-54
 Identities = 92/196 (46%), Positives = 131/196 (66%), Gaps = 5/196 (2%)

Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           EYDYLFKL+LIG+SGVGKS LL RF+ + +  +  STIGV+F  +++ +D K VK QIWD
Sbjct: 2   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  +    ++ +L+GNK 
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 121

Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSN 188
           DL+    V  +  K FA+   + F+ETSALD+TNVE+AF  +  QI + +S++ +    N
Sbjct: 122 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL----N 177

Query: 189 GTASTLPSKGETINVK 204
            T      KG  +N+K
Sbjct: 178 ETTQKKEDKG-NVNLK 192

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  167 bits (424), Expect = 1e-53
 Identities = 78/170 (45%), Positives = 110/170 (64%), Gaps = 1/170 (0%)

Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQI 66
           + YD  FK++L+GDSGVGK+ LL RF    F   +  ST+G++F  + L +D   VK Q+
Sbjct: 1   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R++T AYYR A   LL+YDVT  A+F N+  WL E+ E+   ++ +ML+GN
Sbjct: 61  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 120

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           K D  H   V  EDG+  A++  L FMETSA    NV+ AFT +  ++ +
Sbjct: 121 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (422), Expect = 3e-53
 Identities = 85/166 (51%), Positives = 116/166 (69%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + +  + +K QIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQER+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN +++LIGNK D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
           L     V+ E+ K FAE+  L F+E SA    NVE+AF E   +IY
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (414), Expect = 4e-52
 Identities = 72/166 (43%), Positives = 114/166 (68%)

Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
           +YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ I+ + VK QIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
           TAGQER+R+IT +YYR A   +L YD+T   +F+ +  WLRE+ ++    +I +L+GNK 
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 120

Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           DL     VS +  + F+E + +Y++ETSA ++ NVE  F ++  ++
Sbjct: 121 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  161 bits (407), Expect = 5e-51
 Identities = 73/164 (44%), Positives = 112/164 (68%), Gaps = 1/164 (0%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK QIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132
           ER+R IT+AYYRGA+G +LVYD+T   TF N+ +W + + EH +    ++L+GNK+D+  
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              V+ + G+A A++  + F+E+SA +  NV   F  +   I +
Sbjct: 122 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  160 bits (404), Expect = 2e-50
 Identities = 68/167 (40%), Positives = 108/167 (64%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +++  ++K +K QIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQERYR IT+AYYRGA+G +L+YD+T   +F  V  W  +++ ++  N  V+L+GNK D
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           +     VS+E G+  A+     F E SA D  NV+  F  ++  I +
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (392), Expect = 1e-48
 Identities = 90/169 (53%), Positives = 116/169 (68%)

Query: 12  YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
           YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131
           QE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H+  N+++MLIGNK+DL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
               V  E+G+AFA +  L FMETSA  A NVE AF     +IY+ + +
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (384), Expect = 2e-47
 Identities = 69/187 (36%), Positives = 110/187 (58%), Gaps = 12/187 (6%)

Query: 9   EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI----------D 58
           +YDYL KL+ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +             
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 59  NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPN 118
              V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +    
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 119 -IIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
              ++LIGNK DL     V+    +  A++  + + ETSA    NVE A   +L  I K 
Sbjct: 121 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180

Query: 178 VSKRAVE 184
           + ++ VE
Sbjct: 181 M-EQCVE 186

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (380), Expect = 7e-47
 Identities = 78/167 (46%), Positives = 109/167 (65%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
           AGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK D
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 121

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L     V+  +   FA++  L F+ETSAL   NVE AF +   +I  
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (374), Expect = 6e-46
 Identities = 72/170 (42%), Positives = 104/170 (61%)

Query: 7   DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
           DE+     K+++IG+SGVGKS+LL RFT + F+ E  +TIGV+F  +++ +D    K  I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
           WDTAGQER+R +T +YYRGA G +LVYDVTR  TF  +  WL EL  +   N IV ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
               +    V   +G  FA + S+ F+E SA     V+ AF E++ +I +
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (363), Expect = 1e-44
 Identities = 60/161 (37%), Positives = 109/161 (67%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLV +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++++ ++ Q+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+R++  +Y R +  A++VYD+T   +FQ   +W+ ++R     ++I+ML+GNKTDL   
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
             VS E+G+  A++ ++ F+ETSA    NV+  F  V   +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 3e-42
 Identities = 64/165 (38%), Positives = 100/165 (60%)

Query: 12  YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
           Y FK+VL+G+  VGK++L+ R+ +N+FN +  +T+G  F T+ L I  K V   IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131
           QER+ A+   YYR + GA+LVYD+T   +FQ V  W++ELR+     I + ++GNK DL 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
               VS ++ +++AE        TSA     +E  F ++  ++ +
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 8e-42
 Identities = 73/163 (44%), Positives = 108/163 (66%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           RY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            AV  ++ +++A+  SL FMETSA  + NV   F  +  ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (339), Expect = 8e-41
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 2/163 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F    F  +   TI  +F  + + +D+     +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR-EHTDPNIIVMLIGNKTDLRH 132
           ++ ++   Y +   G +LVY +    +FQ++     ++        + V+L+GNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
              VS+ +G+A AE+    FMETSA   T V+  F E++ Q+ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  130 bits (326), Expect = 7e-39
 Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 2/165 (1%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++G  GVGKS L  +F  +EF  + + T    +  +   +D + V+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV-VLDGEEVQIDILDTAGQ 62

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLR 131
           E Y AI   Y+R   G L V+ +T   +F     +  + LR   D N+  +L+GNK+DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
               VS E+ K  A+Q ++ ++ETSA    NV+  F +++ +I  
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 9e-39
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 18/187 (9%)

Query: 1   MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
           MA          + K V++GD  VGK+ LL  +  + F  E   T+  +    S+ +  K
Sbjct: 1   MA----HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGK 55

Query: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
                ++DTAGQE Y  +    Y      L+ + V   A+FQNV        +   PN+ 
Sbjct: 56  QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP 115

Query: 121 VMLIGNKTDLRHLVA------------VSTEDGKAFAEQ-ESLYFMETSALDATNVENAF 167
            +LIG + DLR                +  E G+  A++  +  ++E SAL    ++  F
Sbjct: 116 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 175

Query: 168 TEVLTQI 174
            E +  I
Sbjct: 176 DEAIIAI 182

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 2e-38
 Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 4/168 (2%)

Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
             LFK++L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + L +D   V  QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGN 126
           GQER+R++ + +YRG+   LL + V    +FQN+  W +E   + D     +   +++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
           K D+      + E      +     + ETSA DATNV  AF E + ++
Sbjct: 124 KIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (314), Expect = 5e-37
 Identities = 68/161 (42%), Positives = 104/161 (64%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+ L+GD+GVGKS+++ RF ++ F+     TIG  F T++++  N++ K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           R+RA+   YYRG+  A++VYD+T+  TF  +  W+RELR+H  P+I+V + GNK DL  +
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
             V   D K +A+     F+ETSA +A N+   F E+  +I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 3e-36
 Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 14/181 (7%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+  +    ++ I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
            Y  +    Y      L+ + V   ++F+NV         H  P    +L+G + DLR  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 134 VAV------------STEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
            +             + E  +  A   +++ ++E SAL    ++N F E +    +    
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 181 R 181
           +
Sbjct: 183 K 183

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 3e-36
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +F +  F  +   TI  +   + + +D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLR-ELREHTDPNIIVMLIGNKTDLRH 132
           ++ A+   Y +   G  LVY +T  +TF ++       LR     ++ ++L+GNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 133 LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYK 176
              V  E G+  A Q  +  F+E+SA    NV   F +++ QI +
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 4e-36
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 2/167 (1%)

Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
               KLV++G  GVGKS L  +F ++ F          +  T+   +D    +  I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSVDGIPARLDILDTA 62

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTD 129
           GQE + A+   Y R   G LLV+ +    +F  V   + + LR     +  V+L+GNK D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           L     V   +  AF     + + E SA    NV+ AF +++  + K
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 169

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 2e-35
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++G  GVGKS L  +  +N F  E   TI   +  +   ID +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGETCLLDILDTAGQE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRH 132
            Y A+   Y R   G L V+ +    +F+++ ++  +++   D  ++ ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              V +   +  A    + ++ETSA     VE+AF  ++ +I +
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  120 bits (302), Expect = 4e-35
 Identities = 61/168 (36%), Positives = 102/168 (60%), Gaps = 4/168 (2%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ + +D+++V  QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVMLIGNKT 128
           ER++++  A+YRGA   +LV+DVT   TF+ +  W  E      P    N   +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           DL +    +         + ++ + ETSA +A NVE AF  +     K
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 169

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 1e-34
 Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 2/165 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           ++LV++G  GVGKS L  +F ++ F  +   TI  +  T+   ID++  +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
            + A+   Y R   G LLV+ VT   +F+ + ++ R+ LR        ++LIGNK DL H
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
              V+ E+G+  A Q  + +ME SA    NV+ AF E++  I K 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  118 bits (295), Expect = 2e-34
 Identities = 63/163 (38%), Positives = 100/163 (61%), Gaps = 5/163 (3%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ ID + +K Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 73  ERY-RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
           ER+ +++   YYR     + VYD+T  A+F ++  W+ E ++H    +I  +L+GNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDAT---NVENAFTEV 170
           R  + V T+  + FA+  S+   ETSA +     +VE  F  +
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 3e-34
 Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 14/174 (8%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ +D K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
            Y  +    Y     +L+ + +   A+F+NV         H  PN  ++L+G K DLR  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 134 VAVSTE------------DGKAFA-EQESLYFMETSALDATNVENAFTEVLTQI 174
                +             G A A E  ++ ++E SAL    ++  F E +  +
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (294), Expect = 4e-34
 Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 3/163 (1%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KLVL+G++ VGKS+++ RF  N+F    + TIG  F T+ + I+   VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
           + ++   YYR A  AL+VYDVT+  +F     W++EL E    +II+ L+GNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 135 AV---STEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
                + E+G+  AE++ L F ETSA    NV + F  +  +I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (279), Expect = 7e-32
 Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 3/165 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +KLV++GD GVGKS L  +F +  F  +   TI   +   +  IDN+     + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRH 132
            + A+   Y R   G L+VY VT  A+F++V R+ + +    D  +  ++L+ NK DL H
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEVLTQIYK 176
           L  V+ + GK  A + ++ ++ETSA D   NV+  F +++  I +
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (278), Expect = 7e-32
 Identities = 56/162 (34%), Positives = 91/162 (56%), Gaps = 1/162 (0%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V++G+  VGKS+++ R+ K  F  + K TIGV+F  R ++++++ V+  +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
           + AIT AYYRGA   +LV+  T   +F+ +  W RE       +I   L+ NK DL    
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLDDS 122

Query: 135 AVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            +  E+ +  A++  L F  TS  +  NV   F  +  +  +
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  111 bits (278), Expect = 1e-31
 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 9/165 (5%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G    GK+ +L +    +    +  T+G    T       K VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETV----TYKNVKFNVWDVGGQD 67

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL-REHTDPNIIVMLIGNKTDL-- 130
           + R +   YY G  G + V D           + L  +  +    + I+++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 131 -RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
                 +  + G       + Y   + A     +    T + +  
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (278), Expect = 1e-31
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 15/176 (8%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F K+ F      T+  E  T S  ID + ++  +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
           Y  +    Y  +   L+ +D++R  T  +V +  +   +   PN  ++L+G K+DLR  V
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 135 ------------AVSTEDGKAFAEQ-ESLYFMETSALDATN-VENAFTEVLTQIYK 176
                        VS + G   A+Q  +  ++E SAL + N V + F         
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 3e-31
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 14/176 (7%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            KLV++GD   GK+ LL   +K++F      T+  E     + +D K V+  +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
            Y  +    Y      L+ + +    + +N+        +H  PN+ ++L+GNK DLR+ 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 134 VAV------------STEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYK 176
                            E+G+  A +  +  +ME SA     V   F        +
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 5e-31
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 3/165 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +++ + G  GVGKS+L+ RF K  F      T+   +       D  +   QI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI-SCDKSICTLQITDTTGSH 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE--HTDPNIIVMLIGNKTDLR 131
           ++ A+           +LVY +T   + + +     ++ E      +I +ML+GNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
               V + + +A A      FMETSA    NV+  F E+L    +
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 166

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (274), Expect = 5e-31
 Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 7/171 (4%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSL-RIDNKVVKAQIWDTAG 71
           + K++++GDSGVGK++L+ R+  ++++ + K+TIG +F T+ +    +KV   Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPN----IIVMLIGNK 127
           QER++++  A+YRGA   +LVYDVT  ++F+N+  W  E   H + N       +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 128 TDLRHLVAVSTEDGKAFAEQE--SLYFMETSALDATNVENAFTEVLTQIYK 176
            D      + +E       +    +    TSA +A NV+ AF E+     +
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  106 bits (264), Expect = 1e-29
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 9/164 (5%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E       T           ++ K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNK---TDL 130
            R +   Y++   G + V D             L   L E    + ++++  NK    + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
            +   ++ + G       + Y   T A     +      +  Q+
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 1e-28
 Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 3/163 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
           ++  +   YY  A  A++++DVT   T++NV  W R+L      NI ++L GNK D++  
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD- 121

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
                     F  +++L + + SA    N E  F  +  ++  
Sbjct: 122 -RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 1e-28
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+ ++G   VGKS+L  +F + +F      TI   F T+ + ++ +    Q+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQD 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWL-RELREHTDPNIIVMLIGNKTDLRH 132
            Y      Y     G +LVY VT   +F+ +     + L       I +ML+GNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              +S E+GKA AE  +  F+E+SA +     + F  ++ +  K
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  103 bits (257), Expect = 2e-28
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 9/167 (5%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G  G GK+ +L R    E    +K TIG    T    +  K +K  +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRH 132
             R     YY      + V D T         + L  + +  +  +  +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 133 LVAVS---TEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            ++ S    E      +  S   + +SA+    +      ++  I +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 4e-27
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            KL + G +GVGKS L+ RF    F  E   T+   +  ++  ID++VV  +I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRH 132
                   + R   G +LVYD+T   +F+ V      L E     N+ ++L+GNK DL H
Sbjct: 62  DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEVLTQIYK 176
              VSTE+G+  A + +  F E SA     N+   F E+  ++ +
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.9 bits (242), Expect = 2e-26
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 3/169 (1%)

Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDT 69
           +  +++VLIG+ GVGKS L + F     +++S    +G +   R+L +D +     + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 70  A-GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNK 127
              +     +     +     L+VY +T  A+F+       +  R     +I ++L+GNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
           +DL     VS  +G+A A      F+ETSA    NV+  F  ++ Q+  
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 95.9 bits (237), Expect = 1e-25
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 9/167 (5%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +L+++G    GK+ +L +F   +       TI          ++++  K  IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
             R+    Y+    G + V D       Q+  R L+  L E       +++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 133 LVAVST---EDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            ++ +                     SA+   ++      +L  I  
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (233), Expect = 4e-25
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 3/164 (1%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
           +K++L+G  GVGKS L   F   E     ++        RS+ +D +     ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVML-IGNKTDLRH 132
             R +           ++VY VT   +F+       +LR     + + ++ +GNK+DL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
              VS ++G+A A      F+ETSA    NV+  F  V+ QI  
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 163

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (234), Expect = 5e-25
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 13/174 (7%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +L ++GD+  GKS+L+ RF    +  +       E   + + +D +     I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRW---LRELREHTDPNIIVMLIGNKTD- 129
             +     +   A   + V+ +    +FQ V R    L  LR      + + L+G +   
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 118

Query: 130 -LRHLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
                  V     +A   + +   + ET A    NV+  F EV  ++  +  ++
Sbjct: 119 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 172

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 3e-24
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K++++G    GK+ +L +F+ NE              +    I     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVML-IGNKTDLRH 132
             R+  + YY      ++V D T           L ++  H D     +L   NK D++ 
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 133 ---LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
              +  +S        +    +     AL    +      +++++
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.7 bits (229), Expect = 4e-24
 Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 43/201 (21%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            KL+L+G    GKS  + +      +     T G+         D + V  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHAT-----------FQNVGRWLRELREHTDPNIIVM 122
             R      +      + +  ++ +              ++   +   +      N  V+
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQE--------------------------SLYFMETS 156
           L  NK DL     + +     F E +                           +Y   T 
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 157 ALDATNVENAFTEVLTQIYKI 177
           A D  N+   F  V   I ++
Sbjct: 177 ATDTENIRFVFAAVKDTILQL 197

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 91.9 bits (227), Expect = 5e-24
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 13/174 (7%)

Query: 5   KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKA 64
            PD+E     +++L+G    GK+ LL +    + +  +  T G    +      ++  K 
Sbjct: 12  APDQEV----RILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSV----QSQGFKL 62

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVML 123
            +WD  GQ + R    +Y+      + V D      F+  G+ L EL E      + V++
Sbjct: 63  NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 122

Query: 124 IGNKTDL---RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
             NK DL        ++                  SAL    V++    V   +
Sbjct: 123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 87.4 bits (215), Expect = 2e-22
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +L L+G    GK+  ++     +FN +   T+G        +I    V  ++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR----KITKGNVTIKLWDIGGQP 58

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDL-- 130
           R+R++   Y RG    + + D       +     L  L +      I V+++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 131 -RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
                 +  +   +  +   +     S  +  N++     ++   
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.0 bits (217), Expect = 3e-22
 Identities = 36/202 (17%), Positives = 56/202 (27%), Gaps = 45/202 (22%)

Query: 13  LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
           L K++L+G    GKS  L +            T G+         + K V  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQ 54

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-----------LREHTDPNIIV 121
              R      +      L +   +         R               +      N+ +
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 122 MLIGNKTDLRHLVAVSTEDGKAFAEQE---------------------------SLYFME 154
           +L  NKTDL             F E E                            LY   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 155 TSALDATNVENAFTEVLTQIYK 176
           T+A++  N+   F +V   I  
Sbjct: 175 TTAINTENIRLVFRDVKDTILH 196

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 82.1 bits (201), Expect = 2e-20
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 9/167 (5%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            +++++G  G GK+ +L R    E       T           +  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRH 132
             R     YY      + V D             L  + E  +    I+++  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 133 LVAVS---TEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            +  S      G    +       +TSA   T ++ A   ++  +  
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.5 bits (203), Expect = 5e-20
 Identities = 29/181 (16%), Positives = 51/181 (28%), Gaps = 20/181 (11%)

Query: 8   EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
           + Y    +L+L+G    GKS ++ +            T G+             V   ++
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIFETK----FQVDKVNFHMF 52

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD----------- 116
           D  GQ   R      +      + V   + +            L+E  +           
Sbjct: 53  DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 112

Query: 117 PNIIVMLIGNKTDLRHL-VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
             I V+L  NK DL    V       + +  + + Y     A      +   T     I 
Sbjct: 113 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIR 172

Query: 176 K 176
            
Sbjct: 173 D 173

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.9 bits (198), Expect = 6e-20
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 17/170 (10%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
           KL+ +G    GK+ LL     +       +T+   +   S  +    +K   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRHL 133
            R +   Y+    G + + D      F      L  L    +  ++  +++GNK D  + 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 134 VAVS----------TEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173
           V+ +          T   +    Q  +     S +       AF + L+Q
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF-QWLSQ 165

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.6 bits (195), Expect = 3e-19
 Identities = 30/200 (15%), Positives = 54/200 (27%), Gaps = 46/200 (23%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            KL+L+G    GKS ++ +           +  G+           K +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIVE----THFTFKDLHFKMFDVGGQR 53

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGR-----------WLRELREHTDPNIIVM 122
             R      + G    +    ++ +                   +          +  ++
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQES--------------------------LYFMETS 156
           L  NK DL       +     + E                             +Y   T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 157 ALDATNVENAFTEVLTQIYK 176
           A D  NV+  F  V   I K
Sbjct: 174 ATDTKNVQFVFDAVTDVIIK 193

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 71.7 bits (174), Expect = 3e-16
 Identities = 29/181 (16%), Positives = 49/181 (27%), Gaps = 21/181 (11%)

Query: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
           Y    KLV +G    GK+ LL     +                 S  +    +    +D 
Sbjct: 10  YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-----QHVPTLHPTSEELTIAGMTFTTFDL 64

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKT 128
            G  + R +   Y     G + + D   H         L   + + T  N+ ++++GNK 
Sbjct: 65  GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124

Query: 129 DLRHLVAVS---------------TEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173
           D    ++                             L     S L        F  +   
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

Query: 174 I 174
           I
Sbjct: 185 I 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.6 bits (161), Expect = 3e-14
 Identities = 22/162 (13%), Positives = 58/162 (35%), Gaps = 7/162 (4%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
            ++ +G    GK+ L  R    ++  +++++I    A   +  +       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHATF-QNVGRWLRELREH---TDPNIIVMLIGNKTDL 130
              +   +   A   + V D        ++V  +L ++         +  +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172
               A S +  +   E+E      T +   + ++++ T    
Sbjct: 121 AM--AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 27/181 (14%)

Query: 12  YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
           Y   +++ G    GK++LL+  T +      + T+  +    +   D   V   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 72  QERYRAITSAYYRGAVGA-----LLVYDVTRHATFQNVGRWLRELREHTD----PNIIVM 122
             + R   S Y +           +V              +L ++   T+      I ++
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQE----------SLYFMETSALDATNVENAFTEVLT 172
           +  NK++L    A      K   E E          SL  +E    +    EN    + +
Sbjct: 116 IACNKSEL--FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

Query: 173 Q 173
            
Sbjct: 174 T 174

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (117), Expect = 8e-08
 Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 10/142 (7%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI--WDTAG 71
             + + G++G GKS+ ++         E  +  GV   T             +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 72  QERYRAITSAY---YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
                     Y    +       +          ++    + +         V     K 
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI-DIAKAISMMKKEFYFVR---TKV 172

Query: 129 DLRHLVAVSTEDGKAFAEQESL 150
           D   +   +  + + F +++ L
Sbjct: 173 D-SDITNEADGEPQTFDKEKVL 193

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 47.8 bits (112), Expect = 1e-07
 Identities = 24/163 (14%), Positives = 42/163 (25%), Gaps = 5/163 (3%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
            K+V+ G    GKS+LL+     E  + +    G         I    +   I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
                            +                  +  E     I  +       +   
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
            A  T +    +E      +  SA     V+     +   + +
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVD----VLRNHLKQ 159

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 42.7 bits (99), Expect = 6e-06
 Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 11/169 (6%)

Query: 18  LIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ----E 73
           L+G    GKS+LL+  T+    +       +      + +  +  +  + D  G      
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ERFTLADIPGIIEGAS 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRW--LRELREHTDPNIIVMLIGNKTDLR 131
             + +   + R      ++  V   A           +E+  +    +    +     + 
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
            L   + +       +E L  +  SAL    +      +   ++ +V  
Sbjct: 125 LLEEEAVKALADALAREGLAVLPVSALTGAGLP----ALKEALHALVRS 169

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 17/165 (10%), Positives = 42/165 (25%), Gaps = 10/165 (6%)

Query: 11  DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
           D   ++   G S  GKS+ L+  T  +    +  T G         + +      +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 71  GQ-------ERYRAITSAYYRGAVGALLVYDVTRHATF--QNVGRWLRELREHTDPNIIV 121
                     +++     Y         +  +            + +    +     +++
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 122 MLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVEN 165
           +   +K       A      +A             S+L    V+ 
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 9/164 (5%)

Query: 15  KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG--Q 72
           ++V++G   VGKS LL+R    +  + +    G      S  I  + +  +I DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132
           E    +        +  +   D+       +      + +          L+        
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
                 E          +     SAL    +E    ++   IY+
Sbjct: 121 EKINEEEIKNKLGTDRHMVK--ISALKGEGLE----KLEESIYR 158

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 8/171 (4%)

Query: 17  VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR 76
           +++G   VGKS L ++  K +  +      GV        ++      ++ DT G     
Sbjct: 4   LIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 77  AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV 136
               +     V   ++ +        +  R + +  E     +    +           +
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 137 STEDGKAFAEQESLYFME---TSALDATNVENAFTEVLTQIYKIVSKRAVE 184
              + +   E  SL F E    SA    N++     +L  I K + ++ ++
Sbjct: 123 REFEREVKPELYSLGFGEPIPVSAEHNINLD----TMLETIIKKLEEKGLD 169

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 13/139 (9%), Positives = 39/139 (28%), Gaps = 14/139 (10%)

Query: 14  FKLVLIGDSGVGKSNLLSRFTKNEFNLESKS--------TIGVEFATRSLRI--DNKVVK 63
             ++++G  GVGKS+ ++          S           +    A  +L I     +++
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92

Query: 64  AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII--V 121
               +       ++         +  L V  +  +          + + +     I    
Sbjct: 93  GGYINDMALNIIKSFLLDKTIDVL--LYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKA 150

Query: 122 MLIGNKTDLRHLVAVSTED 140
           ++            +  ++
Sbjct: 151 IVALTHAQFSPPDGLPYDE 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.95
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.95
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.95
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.94
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.93
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.9
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.89
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.89
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.88
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.87
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.86
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.86
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.85
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.85
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.83
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.82
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.82
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.81
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.81
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.8
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.8
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.8
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.78
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.78
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.76
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.74
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.72
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.69
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.68
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.62
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.62
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.61
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.61
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.53
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.53
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.5
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.5
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.48
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.41
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.3
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.29
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.27
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.24
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.22
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.19
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.0
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.87
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.5
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.24
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.11
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.03
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.03
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.86
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.78
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.77
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.76
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.74
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.69
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.68
d1okkd2	207	GTPase domain of the signal recognition particle r	97.37
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.92
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.88
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.79
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.77
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.66
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.64
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.58
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.55
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.53
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.52
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.49
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.48
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.46
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.41
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.37
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.2
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.19
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.18
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.17
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.17
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.17
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.13
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.06
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.05
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.05
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.99
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.95
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.93
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.93
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.92
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.91
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.85
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.83
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.8
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.8
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.76
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.75
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.75
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.75
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.74
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.74
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.71
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.65
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.62
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.59
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.59
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.57
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.54
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.53
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.52
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.52
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.52
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.5
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.44
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.42
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.36
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.33
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.33
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.29
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.28
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.27
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.24
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.17
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.16
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.13
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.06
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.04
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.02
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.02
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.99
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.96
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.94
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.87
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.79
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.77
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.76
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.69
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.65
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.65
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.64
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.44
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.44
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.44
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.26
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.2
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.16
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.0
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.0
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	93.98
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.97
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.89
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	93.7
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	93.62
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.53
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.53
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.37
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.36
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.12
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.96
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.9
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.41
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.38
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.37
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	92.23
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	92.01
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.01
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	91.98
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.89
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	91.77
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	91.75
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	91.65
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	91.62
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	91.61
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.31
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	91.3
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	90.85
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	90.67
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.46
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	90.28
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	89.94
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	89.89
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	89.78
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.61
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	89.27
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	89.16
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	89.09
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	88.85
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	88.71
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	88.53
d1tuea_	205	Replication protein E1 helicase domain {Human papi	88.29
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	88.07
d1xpua3	289	Transcription termination factor Rho, ATPase domai	87.4
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	87.33
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.15
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	87.13
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	87.08
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.04
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	86.58
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	86.52
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.3
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	85.16
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	83.11
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	82.1
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	81.84
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	80.38

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-35  Score=209.74  Aligned_cols=170  Identities=42%  Similarity=0.781  Sum_probs=159.3

Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf             87434579998699987679898884195788876641169899999989969999999689802344424654159969
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus         9 ~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      +.++.+||+++|+++||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++++
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCE
T ss_conf             98789999999999919899999997299987646655423789999999999999999899854358899999743266


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf             99999799956699999999999861699980999984788889864488999999997699199971699999899999
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (218)
                      +++|||++++.+++.+..|+..+........|+++|+||.|+.....+..++++++++..+++|++|||++|.||+++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
T ss_conf             88842214320011245665542013346356899996214220000235677789986797899974699989899999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999997
Q 027824          169 EVLTQIYKIV  178 (218)
Q Consensus       169 ~i~~~~~~~~  178 (218)
                      .|+.++....
T Consensus       161 ~l~~~l~~~~  170 (171)
T d2ew1a1         161 DLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHC
T ss_conf             9999999706

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.9e-35  Score=209.95  Aligned_cols=168  Identities=40%  Similarity=0.761  Sum_probs=157.7

Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf             87434579998699987679898884195788876641169899999989969999999689802344424654159969
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus         9 ~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      ..++.+||+++|+++||||||+++|.++.+...+.++.+.+.....+......+.+.+||++|++.+..++..+++++|+
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~   80 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG   80 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHCCCE
T ss_conf             98769899999999919899999997398886514555531046899862436999999899855458899999743877


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf             99999799956699999999999861699980999984788889864488999999997699199971699999899999
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (218)
                      +|+|||+++++++..+..|+..+........|+++++||.|+.....+..+++++++++++++|++|||+++.||+++|+
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
T ss_conf             89999781104343123443321023677524889973114222332110366779987598899956999959999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q 027824          169 EVLTQIYK  176 (218)
Q Consensus       169 ~i~~~~~~  176 (218)
                      +|++.+.+
T Consensus       161 ~l~~~i~e  168 (169)
T d3raba_         161 RLVDVICE  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
T ss_conf             99999961

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-35  Score=209.46  Aligned_cols=171  Identities=30%  Similarity=0.466  Sum_probs=155.2

Q ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             88743457999869998767989888419578887664116989999998996999999968980234442465415996
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus         8 ~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      +|....+||+++|+++||||||+++|+.+.+...+.++. .+...+.+.+++..+.+.+||++|.+++..++..++++++
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~   79 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   79 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC-CCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHCCCE
T ss_conf             998872799999979969899999997399971003441-1100257503983300101212455322345211201200


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
Q ss_conf             9999997999566999999999998616-999809999847888898644889999999976991999716999998999
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (218)
                      ++++|||++++.|++.+..|+..+.... ..++|+++|+||.|+...+.+..++++.++...+++|++|||+++.||+++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf             34564011445662022312479998725678865999984060221135402456788761988999838999599999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999974
Q 027824          167 FTEVLTQIYKIVS  179 (218)
Q Consensus       167 ~~~i~~~~~~~~~  179 (218)
                      |+.+++.+.+++.
T Consensus       160 f~~l~~~i~k~~~  172 (173)
T d2fn4a1         160 FEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999746

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-35  Score=209.86  Aligned_cols=165  Identities=39%  Similarity=0.688  Sum_probs=156.1

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      +.+||+++|+++||||||+++|+.+.+...+.+|.+.+...+....++..+.+.+||++|++++..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECCCCCCCEEEEECCCCCCEECCCCHHHCCCCCEEEE
T ss_conf             00799999999939899999998299886445420010000110137853125440268860451035000038966699


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             99799956699999999999861699980999984788889864488999999997699199971699999899999999
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (218)
                      |||+++++||+.+..|+..+........|+++++||.|+...+.++.+++++++++++++|+||||+++.||+++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             98099556777554332200111123321245232102010123225899999998598399970699969899999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q 027824          172 TQIYK  176 (218)
Q Consensus       172 ~~~~~  176 (218)
                      +.+.+
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHHH
T ss_conf             99961

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=206.82  Aligned_cols=166  Identities=28%  Similarity=0.374  Sum_probs=147.9

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|+++||||||+++|.+..+.. +.++.+ +.....+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCCCC-CCCEEE-EEECCEEECCCCCCCEEEEECCCCCCCCEECCCCHHHHHHHCEE
T ss_conf             9699998989939999999981885677-588156-65300100123332103420111222000023101111101000


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             979995669999999999986169-9980999984788889864488999999997699199971699999899999999
Q 027824           93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        93 ~d~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (218)
                      ||++++.+++.+..|+..+..... ..+|+++|+||.|+...+++...++++++..++++|++|||+++.|++++|..|+
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             13422222112121211000024555313798503655266511069999999986598899972799949999999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999744
Q 027824          172 TQIYKIVSK  180 (218)
Q Consensus       172 ~~~~~~~~~  180 (218)
                      +.+..++.+
T Consensus       159 ~~i~~~~~~  167 (168)
T d2gjsa1         159 RQIRLRRDS  167 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHC
T ss_conf             999888617

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-34  Score=205.21  Aligned_cols=171  Identities=46%  Similarity=0.806  Sum_probs=160.5

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf             74345799986999876798988841957888766411698999999899699999996898023444246541599699
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      .++.+||+++|+++||||||+++|..+.+.+.+.++.+.+.....+..+...+.+.+||++|++.+..++..++++++++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCEE
T ss_conf             66799999999999099999999970988865553310102567997167101588997898333146578886527799


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             99997999566999999999998616999809999847888898644889999999976991999716999998999999
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        90 i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (218)
                      ++|||.++++++..+..|+..+......+.|+++++||.|+....++...++.+++...+++|++|||++++|++++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
T ss_conf             99995554056777765301111246873189999703443210000145789999857988999407989699999999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999744
Q 027824          170 VLTQIYKIVSK  180 (218)
Q Consensus       170 i~~~~~~~~~~  180 (218)
                      +++.+.++...
T Consensus       162 l~~~i~~~~~~  172 (174)
T d2bmea1         162 CARKILNKIES  172 (174)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHHC
T ss_conf             99999988756

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-34  Score=204.40  Aligned_cols=176  Identities=49%  Similarity=0.834  Sum_probs=163.9

Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf             87434579998699987679898884195788876641169899999989969999999689802344424654159969
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus         9 ~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      +.+..+||+++|+++||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..+++++++
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCE
T ss_conf             87778899999999909899999996198888728854325789999996578999999899854357899998325878


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf             99999799956699999999999861699980999984788889864488999999997699199971699999899999
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (218)
                      +++|||+++++++..+..|+..+........|+++++||.|+.+...+..++...++...++.|+++||+++.|++++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf             99999676234456676644556640467753999972145310232158887543321476469986475766999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999997443332
Q 027824          169 EVLTQIYKIVSKRAVE  184 (218)
Q Consensus       169 ~i~~~~~~~~~~~~~~  184 (218)
                      .+++.+.+........
T Consensus       162 ~l~~~i~~~~~~~~~~  177 (194)
T d2bcgy1         162 TMARQIKESMSQQNLN  177 (194)
T ss_dssp             HHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             9999999875441447

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=205.93  Aligned_cols=165  Identities=51%  Similarity=0.901  Sum_probs=156.0

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf             74345799986999876798988841957888766411698999999899699999996898023444246541599699
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      .++.+||+++|+++||||||+++|+++.+...+.++.+.++.......++..+.+.+||++|++.+..++..+++++|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHCCCCEE
T ss_conf             96788999999999498999999972998875654434321257999899999888715677336778888872378589


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             99997999566999999999998616999809999847888898644889999999976991999716999998999999
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        90 i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (218)
                      ++|||++++++++.+..|+..+........|+++++||.|+.....+..++++++++..+++|++|||++|.||+++|..
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
T ss_conf             99740675677777888899998614565239998036565321022799999999985998999868999799999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q 027824          170 VLTQI  174 (218)
Q Consensus       170 i~~~~  174 (218)
                      |++.+
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99986

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-34  Score=204.07  Aligned_cols=173  Identities=74%  Similarity=1.194  Sum_probs=160.7

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf             74345799986999876798988841957888766411698999999899699999996898023444246541599699
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      .|+.+||+++|+++||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..++++++++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             97788999999999098999999982998876565532103557999999888998425687377888889775406758


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             99997999566999999999998616999809999847888898644889999999976991999716999998999999
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        90 i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (218)
                      ++|||.+++.|+..+..|+..+......++|+++|+||.|+.+.+....+....+....+.+|++|||++|+|++++|..
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf             99997888654034788999999845899839999765154002433699987764046866999964999699999999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999974433
Q 027824          170 VLTQIYKIVSKRA  182 (218)
Q Consensus       170 i~~~~~~~~~~~~  182 (218)
                      ++..+.+...+++
T Consensus       161 l~~~i~~~~~~~q  173 (175)
T d2f9la1         161 ILTEIYRIVSQKQ  173 (175)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999750336

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.8e-35  Score=208.54  Aligned_cols=163  Identities=33%  Similarity=0.612  Sum_probs=153.5

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|+++||||||+++|+++.+...+.+|.+.+........++..+.+.+||++|++.+..++..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf             49999999899598999999982988864354321221101011068403565421378632103245463068669999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             97999566999999999998616999809999847888898644889999999976991999716999998999999999
Q 027824           93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT  172 (218)
Q Consensus        93 ~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (218)
                      ||++++.+++.+..|+..+.... .++|+++|+||.|+.+.+.+..+++++++++++++|++|||++|.||+++|+.|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EECCCHHHHHHCCCCCCCCCCCC-CCCEEEEEECCCCCCCCEEEEEHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             94232244430223433222238-98327776325775344456402667799875987999606999699999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q 027824          173 QIYK  176 (218)
Q Consensus       173 ~~~~  176 (218)
                      .+.+
T Consensus       161 ~~lq  164 (164)
T d1z2aa1         161 KHLQ  164 (164)
T ss_dssp             HHHC
T ss_pred             HHHC
T ss_conf             9719

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-34  Score=206.48  Aligned_cols=171  Identities=49%  Similarity=0.836  Sum_probs=160.6

Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf             87434579998699987679898884195788876641169899999989969999999689802344424654159969
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus         9 ~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      ..++.+||+++|.++||||||+++|+++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHCCCCCE
T ss_conf             64389999999999949999999997098887547645412789999999999999999899856458899985269989


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf             99999799956699999999999861699980999984788889864488999999997699199971699999899999
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (218)
                      +++|||++++.+++.+..|+..+......+.|+++++||.|+........+++..++...+++|++|||++++||+++|.
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf             99999898714489998888776533047852999982145200013079999877875598899995799989899999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999974
Q 027824          169 EVLTQIYKIVS  179 (218)
Q Consensus       169 ~i~~~~~~~~~  179 (218)
                      +|++.+.+++.
T Consensus       162 ~l~~~i~~k~~  172 (173)
T d2fu5c1         162 TLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHCC
T ss_conf             99999998648

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-34  Score=205.50  Aligned_cols=172  Identities=40%  Similarity=0.707  Sum_probs=153.7

Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECC----------EEEEEEEEECCCCHHHHHH
Q ss_conf             874345799986999876798988841957888766411698999999899----------6999999968980234442
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN----------KVVKAQIWDTAGQERYRAI   78 (218)
Q Consensus         9 ~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~   78 (218)
                      +.++.+||+++|+++||||||+++|+++.+...+.++.+.++....+.+++          ..+.+.+||++|++.+..+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~   80 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL   80 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf             98889899999999919899999996199998647865403667899990100001346663588625557864566889


Q ss_pred             HHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECC
Q ss_conf             46541599699999979995669999999999986169-99809999847888898644889999999976991999716
Q 027824           79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA  157 (218)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (218)
                      +..+++++|++++|||++++.+++.+..|+..+..... ...|+++|+||.|+...+.+..+++++++++++++|++|||
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHHHCCCEEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCEEEEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf             99997269889999963234541145421120122136778429999631241022100489999999984988999958


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999899999999999999744
Q 027824          158 LDATNVENAFTEVLTQIYKIVSK  180 (218)
Q Consensus       158 ~~~~~i~~~~~~i~~~~~~~~~~  180 (218)
                      ++++||+++|.+|++.+.++..+
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99979899999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-33  Score=201.71  Aligned_cols=164  Identities=41%  Similarity=0.753  Sum_probs=155.5

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             43457999869998767989888419578887664116989999998996999999968980234442465415996999
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      ...+||+++|+++||||||+++|..+.+.+.+.+|.+..+.......+.....+.+||++|++.+..++..+++.+++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEE
T ss_conf             74538999998994999999999739888644653001211221112333210035304774124577799875305458


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             99979995669999999999986169998099998478888986448899999999769919997169999989999999
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        91 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (218)
                      +|||++++++++.+..|+..+........|+++|+||.|+.+.+.+..+++++++...+++|+||||+++.||+++|..|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH
T ss_conf             98630102455567776555440368862389962311010023204899999999849999999359997989999999


Q ss_pred             HHHH
Q ss_conf             9999
Q 027824          171 LTQI  174 (218)
Q Consensus       171 ~~~~  174 (218)
                      ++++
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHHC
T ss_conf             9707

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=4.5e-34  Score=204.63  Aligned_cols=164  Identities=33%  Similarity=0.536  Sum_probs=151.0

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|+++||||||+++|+.+.+...+.+|.+.++ ...+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             526999999899588999999972999865477534310-1111345433222233445653123454311423316689


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             997999566999999999998616-9998099998478888986448899999999769919997169999989999999
Q 027824           92 VYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (218)
                      |||++++.+++.+..|+..+.... ..++|+++|+||.|+.+.+.+..++++++++.++++|++|||++|.||+++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             85254113455589999999996188998189995364212233530788999999769769998689992999999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q 027824          171 LTQIYK  176 (218)
Q Consensus       171 ~~~~~~  176 (218)
                      ++++.+
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
T ss_conf             999977

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=202.67  Aligned_cols=170  Identities=53%  Similarity=0.896  Sum_probs=157.8

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             43457999869998767989888419578887664116989999998996999999968980234442465415996999
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      .+.+||+++|+++||||||++++.++.+...+.++.+.+.........+..+.+.+||++|++.+..++..+++.+|+++
T Consensus         1 ~y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCEEE
T ss_conf             94489999999993999999999629999875664110110133213016887876414686322467788740467899


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             99979995669999999999986169998099998478888986448899999999769919997169999989999999
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        91 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (218)
                      +|||++++.+|+.+..|+..+......++|+++|+||.|+...+.+..+++..++...+++|++|||++|.||+++|..+
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i  160 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  160 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             99752584887767888999998579998599995277525544458998887898759879994489997999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999744
Q 027824          171 LTQIYKIVSK  180 (218)
Q Consensus       171 ~~~~~~~~~~  180 (218)
                      ++.+.+...+
T Consensus       161 ~~~i~~~~~~  170 (173)
T d2a5ja1         161 AKEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
T ss_conf             9999999973

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-33  Score=202.53  Aligned_cols=163  Identities=35%  Similarity=0.565  Sum_probs=150.0

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|++++|||||+++++++.+.+.+.++.+..+ .+.+..++..+.+.+||++|.+.+..++..+++++|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEE
T ss_conf             57999999899598999999970988854576312010-11112355322012201246423221124453003389983


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC-CHHHHHHHH
Q ss_conf             97999566999999999998616-9998099998478888986448899999999769919997169999-989999999
Q 027824           93 YDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEV  170 (218)
Q Consensus        93 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i  170 (218)
                      ||++++.||+.+..|+..+.+.. ..+.|+++++||+|+...+.++.+++++++++++++|+||||+++. ||+++|..|
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             CCCCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHCEEEHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf             21010023432202467787631456763899843654666230003167789997598799990798883999999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q 027824          171 LTQIYK  176 (218)
Q Consensus       171 ~~~~~~  176 (218)
                      ++.+.+
T Consensus       163 ~~~i~~  168 (169)
T d1x1ra1         163 VRVIRQ  168 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999973

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-34  Score=203.77  Aligned_cols=164  Identities=30%  Similarity=0.437  Sum_probs=151.0

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|+++||||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+||++|.+.+..++..+++++|++++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCC-CEEEECCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             633899999899298999999971988854475421131-0388317679876301124642222343212232221100


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             997999566999999999998616-9998099998478888986448899999999769919997169999989999999
Q 027824           92 VYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (218)
                      |||++++++++.+..|+..+.... ..++|+++|+||+|+...+.++.+++++++++++++|++|||+++.||+++|..+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH
T ss_conf             10221023345555310122100013454404505333533222115899999999839889998369997999999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q 027824          171 LTQIYK  176 (218)
Q Consensus       171 ~~~~~~  176 (218)
                      +..+.+
T Consensus       162 i~~~~K  167 (167)
T d1xtqa1         162 ILEAEK  167 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHCC
T ss_conf             998369

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-34  Score=202.72  Aligned_cols=161  Identities=37%  Similarity=0.751  Sum_probs=152.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             57999869998767989888419578887664116989999998996999999968980234442465415996999999
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|+++||||||+++|+++.+...+.++.+.+........++..+.+.+||++|++.+...+..+++.++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHCCCEEEEEE
T ss_conf             98999998990989999999849998763662231000001105997235654256885110004388861664499960


Q ss_pred             ECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             79995669999999999986169998099998478888986448899999999769919997169999989999999999
Q 027824           94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus        94 d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (218)
                      |++++.+++.+..|+..+......++|+++|+||.|+.+.+.+..+++.++++.++++|+||||++|.||+++|..|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             65543132666766899998508996499973103404544566889999999749879996289996999999999996


Q ss_pred             H
Q ss_conf             9
Q 027824          174 I  174 (218)
Q Consensus       174 ~  174 (218)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             H
T ss_conf             1

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=202.45  Aligned_cols=167  Identities=28%  Similarity=0.404  Sum_probs=146.5

Q ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             88743457999869998767989888419578887664116989999998996999999968980234442465415996
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus         8 ~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      -|....+||+++|+++||||||+++|+.+.+...+.+|.+. ...+.+...+..+.+.+||++|++.+..++..+++++|
T Consensus         4 ~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~   82 (185)
T d2atxa1           4 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   82 (185)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE-EEEEEEEECCCEEEEECCCCCCCCHHHHHHHHCCCCCC
T ss_conf             99871899999999998999999999649998767771343-24689850795587520466542000011231344211


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC------------CCCCCHHHHHHHHHHCC-CEEEE
Q ss_conf             999999799956699999999999861699980999984788889------------86448899999999769-91999
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH------------LVAVSTEDGKAFAEQES-LYFME  154 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~  154 (218)
                      ++++|||+++++||+++..|+....+....+.|+++|+||.|+.+            .+.+..+++++++++++ ++|+|
T Consensus        83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E  162 (185)
T d2atxa1          83 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  162 (185)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             12111246357888878899999999607888706764244332211123443002355203999999999819977999


Q ss_pred             ECCCCCCCHHHHHHHHHHHHH
Q ss_conf             716999998999999999999
Q 027824          155 TSALDATNVENAFTEVLTQIY  175 (218)
Q Consensus       155 ~Sa~~~~~i~~~~~~i~~~~~  175 (218)
                      |||+++.||+++|+.++++++
T Consensus       163 ~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         163 CSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             ECCCCCCCHHHHHHHHHHHHC
T ss_conf             458988298999999999875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-33  Score=200.47  Aligned_cols=165  Identities=35%  Similarity=0.555  Sum_probs=150.5

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|+++||||||+++|+.+.+...+.+|.+ +.....+.+++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             632899999999799999999973998854576645-2000001001212111221125653225454433424516899


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             997999566999999999998616-9998099998478888986448899999999769919997169999989999999
Q 027824           92 VYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (218)
                      |||++++.|++.+..|+..+.... ....|+++|+||.|+...+.+..+++++++++++++|++|||+++.||+++|..|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             60454344314678876888763035788779998302066531322788899999829879997389993999999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q 027824          171 LTQIYKI  177 (218)
Q Consensus       171 ~~~~~~~  177 (218)
                      ++.+.+.
T Consensus       163 ~~~i~k~  169 (171)
T d2erya1         163 VRVIRKF  169 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999986

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-33  Score=199.62  Aligned_cols=165  Identities=44%  Similarity=0.761  Sum_probs=155.5

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             43457999869998767989888419578887664116989999998996999999968980234442465415996999
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      --.+||+++|+++||||||+++|+.+.+...+.++.+.++...........+.+.+||++|++.+..++..+++++++++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             EEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             25889999999994989999999859888543442022000000000214787774157873110054799860866589


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             99979995669999999999986169998099998478888986448899999999769919997169999989999999
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        91 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (218)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+...+.++.+++++++..++++|+||||++|.||+++|..|
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH
T ss_conf             97325046677878887643320368984598632412432234561777777898669789996489997899999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q 027824          171 LTQIY  175 (218)
Q Consensus       171 ~~~~~  175 (218)
                      ++.+.
T Consensus       164 ~~~i~  168 (170)
T d1r2qa_         164 AKKLP  168 (170)
T ss_dssp             HHTSC
T ss_pred             HHHHH
T ss_conf             99775

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-33  Score=200.99  Aligned_cols=164  Identities=35%  Similarity=0.490  Sum_probs=145.7

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|+++||||||+++|+++.+...+.+|.+.++. ..+..++..+.+.+||++|.+.+. ....++++++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCC-CCCCCCCCCEEEEEEECCCCCCCC-CCHHHHCCCCCCEEE
T ss_conf             679999998997899999999739898763773100111-211246632178885111222234-431543364100010


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC-CHHHHHHHH
Q ss_conf             979995669999999999986169-998099998478888986448899999999769919997169999-989999999
Q 027824           93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEV  170 (218)
Q Consensus        93 ~d~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i  170 (218)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.++.+++++++++++++|+||||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHH
T ss_conf             25688653244554001121111346752266514102555325769999999998099599975541881999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999997
Q 027824          171 LTQIYKIV  178 (218)
Q Consensus       171 ~~~~~~~~  178 (218)
                      ++.+.+++
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHC
T ss_conf             99999845

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-33  Score=201.18  Aligned_cols=162  Identities=28%  Similarity=0.406  Sum_probs=147.5

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      +.+||+++|+++||||||+++|+++.+...+.+|.+..+ ......++..+.+.+||++|.+.+...+..+++++|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECC-CCCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             971899999899798999999970999876376133101-1210002200000111235652111012434332038999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             9979995669999999999986169--99809999847888898644889999999976991999716999998999999
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (218)
                      |||++++++++.+..|+..+.....  .++|+++||||.|+.+.+++..++++++++.++++|++|||+++.||+++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCCCCHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
T ss_conf             72022211001021023433334046789868999606653223455489999999984986999838999399999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q 027824          170 VLTQI  174 (218)
Q Consensus       170 i~~~~  174 (218)
                      |++.+
T Consensus       160 l~~~~  164 (171)
T d2erxa1         160 LLNLE  164 (171)
T ss_dssp             HHHTC
T ss_pred             HHHHH
T ss_conf             99999

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-33  Score=197.66  Aligned_cols=163  Identities=27%  Similarity=0.395  Sum_probs=143.0

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|+++||||||+++|+.+.+...+.+|.+.. .......++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEE-CCEEEEECCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEC
T ss_conf             75699999999969999999997199998758831021-00257507942465024444203232445422320102311


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC------------CCCCCHHHHHHHHHHC-CCEEEEECCC
Q ss_conf             99799956699999999999861699980999984788889------------8644889999999976-9919997169
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH------------LVAVSTEDGKAFAEQE-SLYFMETSAL  158 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~-~~~~~~~Sa~  158 (218)
                      |||+++++||+++..|+.........+.|+++|+||.|+.+            ...+..+++++++.++ +++|+||||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf             41145188999999999998752179973687740544443200466654301244339999999997299869998388


Q ss_pred             CCCCHHHHHHHHHHHHH
Q ss_conf             99998999999999999
Q 027824          159 DATNVENAFTEVLTQIY  175 (218)
Q Consensus       159 ~~~~i~~~~~~i~~~~~  175 (218)
                      ++.||+++|+.++..+.
T Consensus       161 ~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         161 TQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             TCTTHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHH
T ss_conf             89699999999999986

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-32  Score=197.11  Aligned_cols=163  Identities=28%  Similarity=0.424  Sum_probs=143.8

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      ..||+++|+++||||||+++|..+.+...+.+|.+ +........++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE-EECCCCCCCCCCCEEEECCCCCCCCHHCCCCHHHCCCCHHHHHH
T ss_conf             47999999899388999999971999887288224-41122100354202450245676400000302210310044342


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC------------CCCCHHHHHHHHHHCC-CEEEEECCCC
Q ss_conf             97999566999999999998616999809999847888898------------6448899999999769-9199971699
Q 027824           93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQES-LYFMETSALD  159 (218)
Q Consensus        93 ~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  159 (218)
                      ||+++++||+.+..|+.........++|+++++||+|+...            +.+..+++++++++++ .+|+||||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             02102578887888779999973899756886632566421567899887510335599999999981996799935899


Q ss_pred             CCCHHHHHHHHHHHHHH
Q ss_conf             99989999999999999
Q 027824          160 ATNVENAFTEVLTQIYK  176 (218)
Q Consensus       160 ~~~i~~~~~~i~~~~~~  176 (218)
                      +.||+++|+.+++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHC
T ss_conf             96999999999999839

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-32  Score=195.94  Aligned_cols=166  Identities=47%  Similarity=0.770  Sum_probs=153.0

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf             74345799986999876798988841957888-76641169899999989969999999689802344424654159969
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE-SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG   88 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   88 (218)
                      .+..+||+++|+++||||||+++++.+.+... +.++.+.++....+..++..+.+.+||++|++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHCCCCE
T ss_conf             76688999999999299999999971998865412023003677788854838999999899836668888986147865


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf             99999799956699999999999861699980999984788889864488999999997699199971699999899999
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (218)
                      +++|||++++.++..+..|+..+........|+++++||.|+.....+..+++.++++.++++|++|||+++.|++++|.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECHHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf             58986287555503455554554431587735999973303032066569999999998498799984898969999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q 027824          169 EVLTQIY  175 (218)
Q Consensus       169 ~i~~~~~  175 (218)
                      +|++.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHCC
T ss_conf             9999738

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-32  Score=195.85  Aligned_cols=163  Identities=42%  Similarity=0.733  Sum_probs=151.8

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|+++||||||+++|+++.+...+.+|.+.++..+.+...+..+.+.+||++|++.+..++..+++.+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             47999999999919899999997299986546530101202322111123223455568716678888888734650799


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC---CCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf             99799956699999999999861699980999984788889---864488999999997699199971699999899999
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH---LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (218)
                      |||++++.+++.+..|+..+........|+++++||.|+.+   .+.+..++++++++..+++|++|||+++.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
T ss_conf             98078444303455202110133333320232100234101100135469999999998699899934899958999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q 027824          169 EVLTQI  174 (218)
Q Consensus       169 ~i~~~~  174 (218)
                      .|++++
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
T ss_conf             999975

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-33  Score=197.52  Aligned_cols=163  Identities=32%  Similarity=0.527  Sum_probs=149.1

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|+++||||||+++|+++.+...+.++.+ +........++..+.+.+||++|++.+..++..++++++++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE-EEEEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCEEE
T ss_conf             565999999899399999999971999876688611-3553354047615762134577751234442777615351156


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             9979995669999999999986169-998099998478888986448899999999769919997169999989999999
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (218)
                      |||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..++++.+++.++++|++|||++|.|++++|..+
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHCHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             64213566654000004666553048999889999722503202326999999999749859998889995899999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q 027824          171 LTQIY  175 (218)
Q Consensus       171 ~~~~~  175 (218)
                      ++++.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHC
T ss_conf             99870

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-33  Score=197.31  Aligned_cols=163  Identities=31%  Similarity=0.504  Sum_probs=148.2

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      +.+||+++|+++||||||+++|+.+.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             565999999899899999999970989875587502111-0368862268874000246752234454311223553588


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH-CCCEEEEECCCCCCCHHHHHHH
Q ss_conf             997999566999999999998616-99980999984788889864488999999997-6991999716999998999999
Q 027824           92 VYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~  169 (218)
                      |||++++.||+.+..|+..+.... ..+.|+++|+||.|+.....+..+++.+++++ .+++|+||||++|.||+++|.+
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
T ss_conf             52104346667679999999885178897099999843755431465257899999848977999738999198999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q 027824          170 VLTQIY  175 (218)
Q Consensus       170 i~~~~~  175 (218)
                      +++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
T ss_conf             999704

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=201.28  Aligned_cols=162  Identities=32%  Similarity=0.566  Sum_probs=148.0

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      -.+||+++|+++||||||+++|+++.+...+.+|.+.++..+.+..++..+.+.+||++|++.+..++..++++++++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHCCCCCCHHH
T ss_conf             16899999999908899999998498885446530011000112222333222111234653300002001133211000


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             99799956699999999999861699980999984788889864488999999997699199971699999899999999
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (218)
                      |||+++++||+.+..|+..+.... .++|+++|+||.|+......  ++...++...+++|++|||+++.|++++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEECCHHHHHHHHHH--HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             113221101002677788876404-79723534465545551333--688899987598799996898979999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q 027824          172 TQIYK  176 (218)
Q Consensus       172 ~~~~~  176 (218)
                      +.+..
T Consensus       159 ~~l~~  163 (170)
T d1i2ma_         159 RKLIG  163 (170)
T ss_dssp             HHHHT
T ss_pred             HHHCC
T ss_conf             99726

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-32  Score=194.57  Aligned_cols=165  Identities=27%  Similarity=0.408  Sum_probs=144.4

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCEEEEEEEEEEECCEEEEEEEEECCC---CHHHHHHHHHHHCCCC
Q ss_conf             34579998699987679898884195788-8766411698999999899699999996898---0234442465415996
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAG---QERYRAITSAYYRGAV   87 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~~~d   87 (218)
                      ..+||+++|++++|||||+++|++..... ...++.+.+...+.+.+++..+.+.+||+++   ++++  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCCEEEEEEECCCCCCCCCCC--CCCCCCCCCC
T ss_conf             78799999989929999999997286775665662553100000004885155556214431222212--2333333442


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
Q ss_conf             99999979995669999999999986169-99809999847888898644889999999976991999716999998999
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (218)
                      ++++|||++++.+++.+..|+..+..... .++|+++|+||+|+...+++..+++++++..++++|++|||+++.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf             03343112200012212355555430024677129998404453333454277889999876985999828999699999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999997
Q 027824          167 FTEVLTQIYKIV  178 (218)
Q Consensus       167 ~~~i~~~~~~~~  178 (218)
                      |..|++.+..++
T Consensus       160 f~~l~~~i~~rr  171 (172)
T d2g3ya1         160 FEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999999732

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-31  Score=189.90  Aligned_cols=166  Identities=41%  Similarity=0.730  Sum_probs=151.0

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf             74345799986999876798988841957888766411698999999899699999996898023444246541599699
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      ++..+||+++|+++||||||+++|+.+.+...+.+|.+..........++..+.+.+||++|.......+..++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCCCEEHHHHHHHHHCCCEE
T ss_conf             87347999999999799999999984978876566323214445554258401576520368600034556665066157


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHCC----CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHC-CCEEEEECCCCCCCHH
Q ss_conf             999979995669999999999986169----99809999847888898644889999999976-9919997169999989
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE-SLYFMETSALDATNVE  164 (218)
Q Consensus        90 i~v~d~~~~~s~~~l~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~  164 (218)
                      +++||.+++.+++.+..|+..+.....    .+.|+++|+||.|+.+ +.+..+++++++++. .++|+||||+++.||+
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH-CCCCHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf             89986402466422466899999985102577720999413240543-22769999999997499759997689994999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q 027824          165 NAFTEVLTQIYK  176 (218)
Q Consensus       165 ~~~~~i~~~~~~  176 (218)
                      ++|+.+++.++.
T Consensus       162 e~f~~l~~~il~  173 (174)
T d1wmsa_         162 AAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999950

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-31  Score=191.50  Aligned_cols=163  Identities=31%  Similarity=0.519  Sum_probs=147.1

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|+++||||||+++|+++.+...+.++.+..+. ..+...+..+.+.+||++|.+.+...+..+++.++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEC-CCEEEECEEEEEEEEECCCCCCCCCCHHHHHHCCCCCCE
T ss_conf             7669999997998999999999809889865774100101-102310100023334115753223321665310233330


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             9979995669999999999986169-998099998478888986448899999999769919997169999989999999
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV  170 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (218)
                      |||++++.+++.+..|+..+..... .++|+++|+||.|+.. +.+..++++++++.++++|++|||++|+||+++|..|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC-CCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHH
T ss_conf             111243350778889999999863789970999961455454-4445778899999809849998589994899999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q 027824          171 LTQIYK  176 (218)
Q Consensus       171 ~~~~~~  176 (218)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
T ss_conf             999975

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.7e-32  Score=191.67  Aligned_cols=175  Identities=36%  Similarity=0.646  Sum_probs=154.7

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|.++||||||+++|+++.+...+.+|.+.++..+.....+..+.+.+||++|...+...+..++..++++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             79999999999198999999971989887388434123100133089347777640378641112112224675589983


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHCC----CCCCEEEEEECCCCCCCCCCCHHHHHHHHHH-CCCEEEEECCCCCCCHHHHH
Q ss_conf             979995669999999999986169----9980999984788889864488999999997-69919997169999989999
Q 027824           93 YDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAF  167 (218)
Q Consensus        93 ~d~~~~~s~~~l~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~  167 (218)
                      ||.+++.+++.+..|+..+.....    .++|+++|+||+|+.+ ..+..++..+++.. .+++|++|||+++.||+++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ECCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC-CCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf             02541133210025678999873323356777899987503331-20148999999998659769997489896999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999974433321889
Q 027824          168 TEVLTQIYKIVSKRAVEAGSN  188 (218)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~~~~  188 (218)
                      +++++.+.+++.+....+..+
T Consensus       161 ~~l~~~i~~~~~~~~~~~~~~  181 (184)
T d1vg8a_         161 QTIARNALKQETEVELYNEFP  181 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCCCCCCCCCCCC
T ss_conf             999999985505232457997

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-31  Score=189.58  Aligned_cols=169  Identities=44%  Similarity=0.772  Sum_probs=153.8

Q ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             88743457999869998767989888419578887664116989999998996999999968980234442465415996
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus         8 ~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      ++.-..+||+++|+++||||||+++|.++.+...+.++.+.....+.+.+++..+.+.+||++|++++..++..+++++|
T Consensus         2 ~~~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (177)
T d1x3sa1           2 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ   81 (177)
T ss_dssp             TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             86665228999998990889999999719988750442210003679999512348999989984655889999976288


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
Q ss_conf             99999979995669999999999986169-99809999847888898644889999999976991999716999998999
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (218)
                      ++++|||++++.+++.+..|+..+..... ...|+++++||.|... +.+...+++++++.++++|+++||++|+|++++
T Consensus        82 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~  160 (177)
T d1x3sa1          82 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  160 (177)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCCCC-CCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf             8999998978612211022210110245544303578740233333-233489999999977988999848999799999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q 027824          167 FTEVLTQIYKI  177 (218)
Q Consensus       167 ~~~i~~~~~~~  177 (218)
                      |+++++.+.+.
T Consensus       161 f~~l~~~l~~~  171 (177)
T d1x3sa1         161 FEELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHCCC
T ss_conf             99999997359

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-32  Score=193.02  Aligned_cols=165  Identities=44%  Similarity=0.797  Sum_probs=152.8

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      +.+||+++|++++|||||+++|+.+.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..++++++++++
T Consensus         1 ~~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           1 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             97999999999967899999998688987637742303789999988989999999899955568999999734989999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             99799956699999999999861699980999984788889864488999999997699199971699999899999999
Q 027824           92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (218)
                      |||.+++.+++.+..|+..+........|++++++|.|+.. .....+++++++.+++++|++|||++++||+++|++|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHH-HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf             99899765799997544000101467650465211002332-11159999999986697699987999979999999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q 027824          172 TQIYKI  177 (218)
Q Consensus       172 ~~~~~~  177 (218)
                      +.+.++
T Consensus       160 ~~i~~k  165 (166)
T d1g16a_         160 KLIQEK  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
T ss_conf             999961

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=191.31  Aligned_cols=164  Identities=30%  Similarity=0.451  Sum_probs=142.3

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             43457999869998767989888419578887664116989999998996999999968980234442465415996999
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      +..+||+++|+++||||||+++|+.+.+...+.+|.+. .....+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE-CEEEEEECCCCCEEEEEECCCCCCCCHHHHHHCCCCCCEEE
T ss_conf             60699999999997999999999749898544663110-00110003686348986035430010010221234455144


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC------------CCCCHHHHHHHHHHCC-CEEEEECC
Q ss_conf             9997999566999999999998616999809999847888898------------6448899999999769-91999716
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQES-LYFMETSA  157 (218)
Q Consensus        91 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  157 (218)
                      +|||++++.+|+++..|+.........++|+++|+||+|+..+            ......++..+++.++ ++|+||||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             52035347889989999999999738998689984022221210015665111356303689999999819966999288


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q ss_conf             999998999999999999
Q 027824          158 LDATNVENAFTEVLTQIY  175 (218)
Q Consensus       158 ~~~~~i~~~~~~i~~~~~  175 (218)
                      +++.||+++|..+++.++
T Consensus       162 k~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHC
T ss_conf             888199999999999974

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-31  Score=189.90  Aligned_cols=160  Identities=40%  Similarity=0.708  Sum_probs=145.8

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHH-HHHHHHCCCCEEE
Q ss_conf             345799986999876798988841957888766411698999999899699999996898023444-2465415996999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA-ITSAYYRGAVGAL   90 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i   90 (218)
                      +.+||+++|+++||||||+++|+.+.+...+.++.+.....+...+....+.+.+||++|...+.. .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCHHHCCCCCEEEECCCCCEE
T ss_conf             98999999999929899999997399988647642422001344564022179998505731103212103642788249


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC---CCCHHHH
Q ss_conf             99979995669999999999986169-9980999984788889864488999999997699199971699---9998999
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALD---ATNVENA  166 (218)
Q Consensus        91 ~v~d~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~  166 (218)
                      +|||++++++++.+..|+..+..... .++|+++||||.|+.+.+++..+++++++++++++|++|||++   ++||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHH
T ss_conf             99985235666655421278776325899719999213550010121699999999987998999803429738079999


Q ss_pred             HHHHH
Q ss_conf             99999
Q 027824          167 FTEVL  171 (218)
Q Consensus       167 ~~~i~  171 (218)
                      |.+|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHHC
T ss_conf             99869

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-31  Score=190.74  Aligned_cols=167  Identities=35%  Similarity=0.660  Sum_probs=144.5

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEE-CCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             3457999869998767989888419578887664116989999998-996999999968980234442465415996999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      +.+||+++|+++||||||+++|+++.+...+.++.+.......... +...+.+.+||++|++.+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             93899999999969899999997098887637654531012346405763120122103872012467788752155489


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHHCC----CCCCEEEEEECCCCCCCC-CCCHHHHHHHHHHCC-CEEEEECCCCCCCHH
Q ss_conf             99979995669999999999986169----998099998478888986-448899999999769-919997169999989
Q 027824           91 LVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRHLV-AVSTEDGKAFAEQES-LYFMETSALDATNVE  164 (218)
Q Consensus        91 ~v~d~~~~~s~~~l~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  164 (218)
                      +|||++++.+++.+..|+..+.....    .++|+++++||+|+.+.+ .+..+++++++...+ ++|++|||+++.|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEEECCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf             98500123332113320115666641013566867998124220122120157778899998099769999189994999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999997
Q 027824          165 NAFTEVLTQIYKIV  178 (218)
Q Consensus       165 ~~~~~i~~~~~~~~  178 (218)
                      ++|.+|++.+.+++
T Consensus       161 e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         161 TAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999998641

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=2.3e-31  Score=189.65  Aligned_cols=163  Identities=29%  Similarity=0.438  Sum_probs=142.8

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      ..||+++|+++||||||+++|+.+.+...+.+|.+. ........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHEE
T ss_conf             669999999995989999999729999865872010-1122102564477621333221111233554100012344302


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC------------CCCCCHHHHHHHHHHCC-CEEEEECCCC
Q ss_conf             9799956699999999999861699980999984788889------------86448899999999769-9199971699
Q 027824           93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH------------LVAVSTEDGKAFAEQES-LYFMETSALD  159 (218)
Q Consensus        93 ~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  159 (218)
                      ||+++++||+.+..|+.........++|+++||||.|+..            .+.+..+++.+++++.+ .+|+||||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             EECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             30346777999988788887404885169998740344334214677766541756199999999983997599970798


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q ss_conf             99-989999999999999
Q 027824          160 AT-NVENAFTEVLTQIYK  176 (218)
Q Consensus       160 ~~-~i~~~~~~i~~~~~~  176 (218)
                      +. +++++|+.++..+.+
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHC
T ss_conf             984999999999999955

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-29  Score=179.95  Aligned_cols=165  Identities=20%  Similarity=0.358  Sum_probs=139.4

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|+++||||||+++|+++.+... .++.+..+ .+.+.+++..+.+.+||++|+..+.     +++++|++++
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEE-EEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCCCCCC-CCCCCEEE-EEEEECCCEEEEEEEEECCCCCCCC-----CCCCCCEEEE
T ss_conf             837999999899789999999971978776-77554047-7874048568999985045321001-----3556653688


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHC---CCCCCEEEEEECCCCC--CCCCCCHHHHHHHHHH-CCCEEEEECCCCCCCHHH
Q ss_conf             997999566999999999998616---9998099998478888--9864488999999997-699199971699999899
Q 027824           92 VYDVTRHATFQNVGRWLRELREHT---DPNIIVMLIGNKTDLR--HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVEN  165 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~---~~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~  165 (218)
                      |||++++.||+.+..|+..+....   ...+|+++|+||.|+.  ..+.+..+++++++.+ ++++|+||||+++.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf             86101211244157888889998640367861788753047404430210599999999981997499907899969999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999744333
Q 027824          166 AFTEVLTQIYKIVSKRAV  183 (218)
Q Consensus       166 ~~~~i~~~~~~~~~~~~~  183 (218)
                      +|..+++.+.+.+.++..
T Consensus       157 ~F~~l~~~i~~~~~~~~l  174 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQQQL  174 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCC
T ss_conf             999999999986203045

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=174.67  Aligned_cols=156  Identities=21%  Similarity=0.371  Sum_probs=128.4

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|++++|||||+++|..+.+...+.+|.+.++..  +..++  +.+.+||++|++.+...+..++.+++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEE--EEEEE--EEEEEEECCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf             3799999999989899999997197887405641024424--54226--8888840100012112222222233101101


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCHHHHHHH-----HHHCCCEEEEECCCCCCCHHHH
Q ss_conf             97999566999999999998616-99980999984788889864488999999-----9976991999716999998999
Q 027824           93 YDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAF-----AEQESLYFMETSALDATNVENA  166 (218)
Q Consensus        93 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~  166 (218)
                      ||++++.+++....|+..+.... ..++|+++++||.|+.+...  ..+..+.     +...+++++++||++++|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH--HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf             33212211100246666655442146985899985256301256--7889999999988857998999858579499999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q 027824          167 FTEVLTQI  174 (218)
Q Consensus       167 ~~~i~~~~  174 (218)
                      |++|++.+
T Consensus       156 ~~~l~~~~  163 (164)
T d1zd9a1         156 LQWLIQHS  163 (164)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHCC
T ss_conf             99999826

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.95  E-value=3.9e-28  Score=171.74  Aligned_cols=159  Identities=22%  Similarity=0.356  Sum_probs=125.3

Q ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             88743457999869998767989888419578887664116989999998996999999968980234442465415996
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV   87 (218)
Q Consensus         8 ~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   87 (218)
                      .+.+..+||+++|+++||||||+++|.++.+...+ ++.+.+.  ..+...+  +.+.+||++|.+.+...+..+++.+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~--~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFNI--KSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTEEE--EEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCE-EEEEEEE--EEECCCC--EEEEEEECCCCCCCHHHHHHHHHCCC
T ss_conf             78998779999999998999999999648777520-2331058--9850488--56767632542100147788764155


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCHHHHHHH-----HHHCCCEEEEECCCCCC
Q ss_conf             99999979995669999999999986169-9980999984788889864488999999-----99769919997169999
Q 027824           88 GALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAF-----AEQESLYFMETSALDAT  161 (218)
Q Consensus        88 ~~i~v~d~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  161 (218)
                      ++++|||++++.++.....|+..+..... .++|+++++||.|+......  ....+.     +....+.+++|||++|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCH--HHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             26886204565424444455443344303699859999974054542428--9999998787777369889998699898


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             989999999999
Q 027824          162 NVENAFTEVLTQ  173 (218)
Q Consensus       162 ~i~~~~~~i~~~  173 (218)
                      |++++|+||++.
T Consensus       164 gv~e~~~~l~~~  175 (176)
T d1fzqa_         164 GVQDGMNWVCKN  175 (176)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CHHHHHHHHHHC
T ss_conf             999999999961

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.95  E-value=1.1e-27  Score=169.24  Aligned_cols=157  Identities=20%  Similarity=0.351  Sum_probs=124.3

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|+++||||||+++|.+..+. .+.+|.+....  .+...+  +.+.+||++|++.+...+..+++.++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK--TLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEEE--EEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHCCCCCC-CCCCEEEEEEE--ECCCCC--CCEEEEECCCCHHHHHHHHHHHHHHHCCEEE
T ss_conf             279999999998999999998089987-30235753043--011345--4303663376055415777641210024022


Q ss_pred             EECCCHHHHHHHHHHHHHHHH-HCCCCCCEEEEEECCCCCCCCCCCHHHHHHHH-----HHCCCEEEEECCCCCCCHHHH
Q ss_conf             979995669999999999986-16999809999847888898644889999999-----976991999716999998999
Q 027824           93 YDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFA-----EQESLYFMETSALDATNVENA  166 (218)
Q Consensus        93 ~d~~~~~s~~~l~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~  166 (218)
                      ||+++..++.....++..... ....+.|+++|+||.|+.+...+.  +.....     ...++++++|||++|+|++++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN--AIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH--HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHH--HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf             2012322278888766654321015799669997414520126789--99999986564337988999978889798999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q 027824          167 FTEVLTQIYK  176 (218)
Q Consensus       167 ~~~i~~~~~~  176 (218)
                      |++|++++.+
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
T ss_conf             9999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.95  E-value=1.3e-28  Score=174.33  Aligned_cols=162  Identities=21%  Similarity=0.348  Sum_probs=127.8

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf             74345799986999876798988841957888766411698999999899699999996898023444246541599699
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   89 (218)
                      ....+||+++|+++||||||++++.++.+... .+|.+.....  ....+  +.+.+||++|++.+..++..++..++++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVET--LSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCCEEE--EEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCCEEEEE--EEECC--EEEEEEECCCCCCCCHHHHHHHCCCEEE
T ss_conf             89668999999999988999988733877764-3306547999--96388--9999995564200114577651344068


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCHHHHHHH-----HHHCCCEEEEECCCCCCCH
Q ss_conf             99997999566999999999998616-99980999984788889864488999999-----9976991999716999998
Q 027824           90 LLVYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAF-----AEQESLYFMETSALDATNV  163 (218)
Q Consensus        90 i~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i  163 (218)
                      ++|||++++.++.....|+..+.... ..+.|+++++||.|+.+..  ...++.+.     +...++.+++|||++|+|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC--CHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf             8886411221102589999998775314776269999962566666--78999999999987617988999779899799


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999997
Q 027824          164 ENAFTEVLTQIYKIV  178 (218)
Q Consensus       164 ~~~~~~i~~~~~~~~  178 (218)
                      +++|++|++.+.+..
T Consensus       167 ~e~~~~l~~~i~~~~  181 (182)
T d1moza_         167 TEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999999757

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.94  E-value=1.3e-27  Score=168.87  Aligned_cols=156  Identities=19%  Similarity=0.366  Sum_probs=122.2

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|+++||||||+++|+++.+.. ..+|.+.....  ....  .+.+.+||++|.+.+...+..+++.++++++
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET--VTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEEE--EEET--TEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHCCCCCC-CCCEEEEEEEE--EECC--CEEEEEECCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             74799999999987899999984488887-43213256777--5035--2444786279861014677765126624899


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCCCCCCCHHHHHH-----HHHHCCCEEEEECCCCCCCHHH
Q ss_conf             99799956699999999999861-69998099998478888986448899999-----9997699199971699999899
Q 027824           92 VYDVTRHATFQNVGRWLRELREH-TDPNIIVMLIGNKTDLRHLVAVSTEDGKA-----FAEQESLYFMETSALDATNVEN  165 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~  165 (218)
                      |||+++++++..+..|+...... .....|+++++||.|+.+...  ..++..     .+...++.+++|||++++|+++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC--HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf             984154221789999999875301466651311210135610034--899999999999876798899802888969999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q 027824          166 AFTEVLTQI  174 (218)
Q Consensus       166 ~~~~i~~~~  174 (218)
                      +|++|...+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHC
T ss_conf             999999855

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.93  E-value=8.9e-26  Score=158.68  Aligned_cols=156  Identities=16%  Similarity=0.313  Sum_probs=123.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             57999869998767989888419578887664116989999998996999999968980234442465415996999999
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   93 (218)
                      +||+++|+++||||||+++|+++.+...+..+....     ...+...+.+.+||++|...+...+..+++.+++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE-----EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEE-----EEEEEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEEEE
T ss_conf             989999999989899999996598886221114679-----997301699988627884000156666420532689998


Q ss_pred             ECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCC---HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             79995669999999999986169-998099998478888986448---89999999976991999716999998999999
Q 027824           94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVS---TEDGKAFAEQESLYFMETSALDATNVENAFTE  169 (218)
Q Consensus        94 d~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (218)
                      |++++.++..+..|+..+..... ...|+++++||.|+.......   ......++...++++++|||++|+|++++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
T ss_conf             74273777777777788877640457549997510244344428999999999988637988999679889798999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q 027824          170 VLTQI  174 (218)
Q Consensus       170 i~~~~  174 (218)
                      |++++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHHCC
T ss_conf             99519

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.90  E-value=2.5e-23  Score=145.11  Aligned_cols=156  Identities=21%  Similarity=0.354  Sum_probs=119.5

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      ..+||+++|.++||||||++++.+..+.... ++.+..  .......+  +.+.+||+++.+.....+..++..++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCCEE--EEEEEECC--EEEEEECCCCCCCCCCCHHHHHCCCEEEEE
T ss_conf             8579999999998989999999668887302-433335--79984053--699995155310122111133215415665


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHH-----HHCCCEEEEECCCCCCCHHH
Q ss_conf             997999566999999999998616-999809999847888898644889999999-----97699199971699999899
Q 027824           92 VYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFA-----EQESLYFMETSALDATNVEN  165 (218)
Q Consensus        92 v~d~~~~~s~~~l~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  165 (218)
                      ++|.++..+++....++....... ....|+++|+||.|+.....  ..+..+..     ...+++++++||++|+|+++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCC--HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf             214456421455420013443203555337999997056312176--999999999976674698899996988979999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q 027824          166 AFTEVLTQI  174 (218)
Q Consensus       166 ~~~~i~~~~  174 (218)
                      +|++|++++
T Consensus       167 ~~~~L~~~l  175 (177)
T d1zj6a1         167 GLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999973

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.89  E-value=1.1e-22  Score=141.64  Aligned_cols=159  Identities=21%  Similarity=0.334  Sum_probs=121.7

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|+++||||||+++++++.+.... ++.+...  .......  +.+.+|+.++.+.............++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNV--ETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEEE--EEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCCCCEE-CCCCEEE--EEECCCC--EEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             329999999998999999999679876034-1321356--5403686--6888750454111222001232101332113


Q ss_pred             EECCCHHHHHHHHHHHHHHH-HHCCCCCCEEEEEECCCCCCCCCC---CHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf             97999566999999999998-616999809999847888898644---88999999997699199971699999899999
Q 027824           93 YDVTRHATFQNVGRWLRELR-EHTDPNIIVMLIGNKTDLRHLVAV---STEDGKAFAEQESLYFMETSALDATNVENAFT  168 (218)
Q Consensus        93 ~d~~~~~s~~~l~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (218)
                      +++.+..++.....++.... .......|+++++||.|+......   ....+..++...+++|++|||++|+|++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~  159 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAME  159 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHH
T ss_pred             HHHHHCCHHHHCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf             44430100010000114666653035541799986055411011789999987788763898899975888979899999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q 027824          169 EVLTQIYK  176 (218)
Q Consensus       169 ~i~~~~~~  176 (218)
                      +|++.+.+
T Consensus       160 ~l~~~l~~  167 (169)
T d1upta_         160 WLVETLKS  167 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
T ss_conf             99999995

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.7e-23  Score=146.01  Aligned_cols=160  Identities=19%  Similarity=0.201  Sum_probs=124.6

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|..+||||||+++|..+.+  .+.||+|.+...  +  ....+.+.+||++|++.+...+..+++.+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~--~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP--F--DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE--E--ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEEEEEE--E--ECCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             05999999999988999999967999--998166279999--8--40201444203466421134332002343204676


Q ss_pred             EECCCHH-----------HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC----------------CCCCHHHHHHHH
Q ss_conf             9799956-----------6999999999998616999809999847888898----------------644889999999
Q 027824           93 YDVTRHA-----------TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL----------------VAVSTEDGKAFA  145 (218)
Q Consensus        93 ~d~~~~~-----------s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------------~~~~~~~~~~~~  145 (218)
                      ++.++..           .++....|...+......+.|+++++||.|+...                ...+......+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             EECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             40352332134431300159999999999711420685179861301156651441477774631038733599999999


Q ss_pred             HH----------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             97----------6991999716999998999999999999997
Q 027824          146 EQ----------ESLYFMETSALDATNVENAFTEVLTQIYKIV  178 (218)
Q Consensus       146 ~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (218)
                      ..          ..+.+++|||++++||+++|+.+.+.+.+..
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             9999974536799617877489817819999999999999974

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.4e-22  Score=141.05  Aligned_cols=156  Identities=19%  Similarity=0.243  Sum_probs=114.0

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             45799986999876798988841957888766411698999999899699999996898023444246541599699999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   92 (218)
                      .+||+++|..+||||||+++|....++     +.+..  ...+...  .+.+.+||++|++.+..++..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~~~--~~~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIV--ETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSC-----CCSEE--EEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHCCCC-----CCCEE--EEEEEEE--EEEEEEECCCCCCCCCCCHHHCCCCCCEEEEE
T ss_conf             169999999998889999988408979-----72479--9999743--31221002466510011111014677536668


Q ss_pred             EECCCHHHH-----------HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC---------------CCCCHHHHHHH--
Q ss_conf             979995669-----------99999999998616999809999847888898---------------64488999999--
Q 027824           93 YDVTRHATF-----------QNVGRWLRELREHTDPNIIVMLIGNKTDLRHL---------------VAVSTEDGKAF--  144 (218)
Q Consensus        93 ~d~~~~~s~-----------~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---------------~~~~~~~~~~~--  144 (218)
                      +|+++..++           +....|...+........|+++++||.|+...               ......+...+  
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             75034211777764367899999999999611202798789981532145541353488787664058643899999999


Q ss_pred             ---HHH------CCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             ---997------699199971699999899999999999999
Q 027824          145 ---AEQ------ESLYFMETSALDATNVENAFTEVLTQIYKI  177 (218)
Q Consensus       145 ---~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (218)
                         ...      ..+.+++|||++++||+++|+.+.+.+.+.
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             999997315678950558888688783999999999999756

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.5e-21  Score=134.05  Aligned_cols=151  Identities=19%  Similarity=0.256  Sum_probs=117.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             79998699987679898884195788876641169899999989969999999689802344424654159969999997
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      ||+++|+++||||||+++++++.+.. ..++.+.+...    .....+.+.+||+.|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEE----LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEEE----ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCE-EECEEEEEEEE----ECCCCEEEEEEEECCCHHHHHHHHHHHHHEEEEEEECC
T ss_conf             89999999999999999995899871-50246276899----50587567887403211346667654000046423000


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHH------------HCCCEEEEECCCCCC
Q ss_conf             9995669999999999986169-998099998478888986448899999999------------769919997169999
Q 027824           95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAE------------QESLYFMETSALDAT  161 (218)
Q Consensus        95 ~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~  161 (218)
                      .++..++.....|+........ .+.|++++++|.|+....  ...+..+...            ...+.+++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf             33402103456787763200103785499984133641237--8999999863323468886424479789993378898


Q ss_pred             CHHHHHHHHHH
Q ss_conf             98999999999
Q 027824          162 NVENAFTEVLT  172 (218)
Q Consensus       162 ~i~~~~~~i~~  172 (218)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHHC
T ss_conf             99999999848

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=7.8e-22  Score=136.86  Aligned_cols=157  Identities=20%  Similarity=0.182  Sum_probs=106.6

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHH--------HHHHHH
Q ss_conf             4345799986999876798988841957888-7664116989999998996999999968980234--------442465
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE-SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY--------RAITSA   81 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~   81 (218)
                      .+.-.|+++|.+++|||||+++|++...... ..+..+...........+  ..+.+||+||....        ......
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEE--EEEEECCCCCCCCCCCCCCHHCCCCCCC
T ss_conf             54769999999999999999999688850331557732211211133200--1355303443111122220000111122


Q ss_pred             HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC-CEEEEECCCCC
Q ss_conf             41599699999979995669999999999986169998099998478888986448899999999769-91999716999
Q 027824           82 YYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDA  160 (218)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  160 (218)
                      +++++|++++|+|++++.+... ..|...+.. ...+.|+++|+||+|+....   .+..+.+....+ ..++++||+++
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~-~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~  155 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKP-LVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDE  155 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGG-GTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCH
T ss_pred             CCCCCCCEEEEECHHHHHCCCC-CCHHHHEEC-CCCCHHHHHHHCCCCCCCCH---HHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             2233200356551266301321-120121001-23220222200016000188---999999986214686599966789


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             99899999999999
Q 027824          161 TNVENAFTEVLTQI  174 (218)
Q Consensus       161 ~~i~~~~~~i~~~~  174 (218)
                      .|+++++++|++.+
T Consensus       156 ~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         156 RQVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHC
T ss_conf             79999999999848

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.3e-21  Score=134.27  Aligned_cols=160  Identities=22%  Similarity=0.286  Sum_probs=117.3

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654159969999
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   91 (218)
                      +.+||+++|.++||||||+++|.   +...+.||+|.+..  .+....  +.+.+||++|++.+...+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EEEETT--EEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHH---CCCCCCCEEEEEEE--EEEEEE--EEEEEECCCCEEEECCCCCCCCCCCCEEEE
T ss_conf             95899999899999899999884---68988872414999--996014--456651353114411423320100003679


Q ss_pred             EEECCCHHH----------HHHHHHHHHHH-HHHCCCCCCEEEEEECCCCCCC----------------CCCCHHHHHHH
Q ss_conf             997999566----------99999999999-8616999809999847888898----------------64488999999
Q 027824           92 VYDVTRHAT----------FQNVGRWLREL-REHTDPNIIVMLIGNKTDLRHL----------------VAVSTEDGKAF  144 (218)
Q Consensus        92 v~d~~~~~s----------~~~l~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~----------------~~~~~~~~~~~  144 (218)
                      +++.++..+          ++....++..+ ......+.|+++++||.|+...                .....+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCHHHCCCEEEEEECCCHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             99847701023101001144678899999961765469639998231145665024507877472136896269999999


Q ss_pred             HHH-----------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             997-----------6991999716999998999999999999997
Q 027824          145 AEQ-----------ESLYFMETSALDATNVENAFTEVLTQIYKIV  178 (218)
Q Consensus       145 ~~~-----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (218)
                      ...           ..+.+++|||+++.+|+.+|+.+.+.+.+..
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             999999855587888467778254675899999999999999985

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=4.7e-21  Score=132.50  Aligned_cols=158  Identities=15%  Similarity=0.067  Sum_probs=106.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHH-------HHHHHHHHCCC
Q ss_conf             57999869998767989888419578887664116989999998996999999968980234-------44246541599
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY-------RAITSAYYRGA   86 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~   86 (218)
                      .+|+++|.++||||||+|+|++...........+........ .......+.+||+||....       .......+..+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART   80 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCEEEEECEE-EECCCCEEEECCCCEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             889998999998999999996899715346897166656415-5237874898288806527517779999999987753


Q ss_pred             CEEEEEEECCCH--HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf             699999979995--669999999999986169998099998478888986448899999999769919997169999989
Q 027824           87 VGALLVYDVTRH--ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVE  164 (218)
Q Consensus        87 d~~i~v~d~~~~--~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (218)
                      +++++++|....  .+......|+....... .+.|+++|+||+|+.....  .++..+.....+.+++.+||++|.|++
T Consensus        81 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2          81 RVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCEEEEEECCCCCCHH
T ss_conf             4566530012465321013344431122000-1021101155665552778--999999997569838999767888999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q 027824          165 NAFTEVLTQIY  175 (218)
Q Consensus       165 ~~~~~i~~~~~  175 (218)
                      ++++.|.+.+.
T Consensus       158 ~L~~~i~~~l~  168 (180)
T d1udxa2         158 ALKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999876

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.9e-22  Score=138.54  Aligned_cols=150  Identities=19%  Similarity=0.211  Sum_probs=108.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHH--------HHHHHHHHC
Q ss_conf             579998699987679898884195788-87664116989999998996999999968980234--------442465415
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY--------RAITSAYYR   84 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~   84 (218)
                      ++|+++|.++||||||+++|++..... .+.+....+.........+  ..+.+||++|..+.        ......++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCC--CEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             89999899999899999999688866751246642204765320268--2354136532122465202478999999987


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf             99699999979995669999999999986169998099998478888986448899999999769919997169999989
Q 027824           85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVE  164 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (218)
                      .+|++++++|..++.+++....|...+... ..+.|+++|+||+|+..+.....       ...+.+++++||+++.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~~-------~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGMS-------EVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEEE-------EETTEEEEECCTTTCTTHH
T ss_pred             HCCCCCEEECCCCCCCHHHHHHHHHHHHHC-CCCCCEEECCCHHHHHHHHHHHH-------HHCCCCEEEEECCCCCCHH
T ss_conf             413320110256542034555444555420-14101020465444335588798-------7279967999788898999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q 027824          165 NAFTEVLTQ  173 (218)
Q Consensus       165 ~~~~~i~~~  173 (218)
                      +++++|.+.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999813

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.85  E-value=8.7e-21  Score=131.04  Aligned_cols=157  Identities=21%  Similarity=0.275  Sum_probs=119.7

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             43457999869998767989888419578887664116989999998996999999968980234442465415996999
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      ....||+++|+++||||||+++|+++.+.... ++.+.+.  ..+..++  ..+.+||+.+...+...+..+.+..++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEE-CCCCCCE--EEEEECC--CCCCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             77778999999998989999999678875224-0233432--5897436--21122344400456567765402322011


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHH-HCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH-----------------CCCEE
Q ss_conf             99979995669999999999986-1699980999984788889864488999999997-----------------69919
Q 027824           91 LVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-----------------ESLYF  152 (218)
Q Consensus        91 ~v~d~~~~~s~~~l~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  152 (218)
                      +++|+++...+.....++..... ....+.|+++++||.|+...  ....+..+....                 .++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC--CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEE
T ss_conf             24531574203778999987510123578746998732475121--8899999997204421333234677751378779


Q ss_pred             EEECCCCCCCHHHHHHHHHHHH
Q ss_conf             9971699999899999999999
Q 027824          153 METSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~~  174 (218)
                      ++|||++|+|++++|+||++.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9985888989999999999842

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.83  E-value=1.7e-19  Score=123.91  Aligned_cols=159  Identities=16%  Similarity=0.138  Sum_probs=108.0

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC-----EEEE--EEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             34579998699987679898884195788876641-----1698--9999998996999999968980234442465415
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTI-----GVEF--ATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYR   84 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~-----~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   84 (218)
                      ..++|+++|++++|||||+++|++.........+.     +.+.  ........+  ..+.++|++|+..+.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             9879999907787099999999974395620223300121330222300001378--52110125322321000123443


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC--HHHHHHHHHH----CCCEEEEECCC
Q ss_conf             99699999979995669999999999986169998099998478888986448--8999999997----69919997169
Q 027824           85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS--TEDGKAFAEQ----ESLYFMETSAL  158 (218)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~----~~~~~~~~Sa~  158 (218)
                      .+|++++++|+.++...+.. ..+..+..   .++|+++++||.|+.......  .+..+.+...    .+.+++++||+
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~-~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTG-EHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             HCCCCCCCCCCCCCCCHHHH-HHHHHHHH---CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             02432121222221102345-44555552---597620112323445778888899999999987505788738998766


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q ss_conf             999989999999999999
Q 027824          159 DATNVENAFTEVLTQIYK  176 (218)
Q Consensus       159 ~~~~i~~~~~~i~~~~~~  176 (218)
                      +|+|++++++.|.+.+.+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCC
T ss_conf             782999999999961886

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=2.4e-19  Score=123.08  Aligned_cols=164  Identities=20%  Similarity=0.136  Sum_probs=109.3

Q ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHH-----------
Q ss_conf             887434579998699987679898884195788-87664116989999998996999999968980234-----------
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY-----------   75 (218)
Q Consensus         8 ~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----------   75 (218)
                      ++....+||+++|++++|||||+++|++..... ...+..+.......+..++.  .+.++|++|....           
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~   80 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKY   80 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCS
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCC--EEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             887888889999999999999999997787622422565433320012204992--346523688510122122221000


Q ss_pred             -HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH-----CC
Q ss_conf             -442465415996999999799956699999999999861699980999984788889864488999999997-----69
Q 027824           76 -RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-----ES  149 (218)
Q Consensus        76 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~  149 (218)
                       .......++.+|++++|+|++.+..-+ ...++..+..   .+.|+|+++||.|+.........+..+...+     ..
T Consensus        81 ~~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          81 SNYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCCHHH-HHHHHHHHHH---CCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             1177898986099999960345650266-8899999997---08860530010001101011025689999988511689


Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9199971699999899999999999999
Q 027824          150 LYFMETSALDATNVENAFTEVLTQIYKI  177 (218)
Q Consensus       150 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (218)
                      .+++.+||+++.|++++++.|.+.+..+
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             8089986789989999999999999708

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=4.4e-20  Score=127.16  Aligned_cols=156  Identities=19%  Similarity=0.193  Sum_probs=101.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCH---------HHHHHHHHHHCC
Q ss_conf             79998699987679898884195788876641169899999989969999999689802---------344424654159
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE---------RYRAITSAYYRG   85 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~   85 (218)
                      .|+++|.+++|||||+++|++....... ...+.+.......+......+.+||++|..         .+......++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCEEC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             8999999999899999999677753031-447635313222122122111112454213210122332222000023555


Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf             96999999799956699999999999861699980999984788889864488999999997699199971699999899
Q 027824           86 AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVEN  165 (218)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  165 (218)
                      +|+++++.+.+....... ..++..+..   .+.|+|+|+||+|+..+.  ..+...++.......++++||+++.|+++
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~---~~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRK---STVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHH---HTCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred             CCEEEEEECCCCCCCCCC-CCCCCCCCC---CCCCCCCCCHHHHHHHHH--HHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf             718999601121122221-111222222---221100131023345565--66788999861899769996678989999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q 027824          166 AFTEVLTQIYKI  177 (218)
Q Consensus       166 ~~~~i~~~~~~~  177 (218)
                      ++++|++.+.+.
T Consensus       155 L~~~i~~~l~e~  166 (171)
T d1mkya1         155 MLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCC
T ss_conf             999999869777

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=1.2e-19  Score=124.79  Aligned_cols=161  Identities=20%  Similarity=0.238  Sum_probs=114.5

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             43457999869998767989888419578887664116989999998996999999968980234442465415996999
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   90 (218)
                      ...+||+++|..+||||||++++..+.+    .||+|+..  ..+.+++  +.+.+||++|++.++..|..++.++++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             HHCCEEEEECCCCCCHHHHHHHHHCCCC----CCCCCEEE--EEEEECC--EEEEEEECCCCCEECCCHHHHCCCCCCEE
T ss_conf             2347799998999988999998950982----78888678--9999776--99999863765122011234225665137


Q ss_pred             EEEECCCHH----------HHH-HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC------------------------
Q ss_conf             999799956----------699-999999999861699980999984788889864------------------------
Q 027824           91 LVYDVTRHA----------TFQ-NVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA------------------------  135 (218)
Q Consensus        91 ~v~d~~~~~----------s~~-~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------------------------  135 (218)
                      +++|.++..          .+. ....|...+......++|++|++||.|+.....                        
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~  155 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  155 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred             EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEECHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCC
T ss_conf             99972541013223210577899899999986175437983899820466656532167421777484435667742123


Q ss_pred             ------CCHHHHHHHHHH-----C--------CCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             ------488999999997-----6--------9919997169999989999999999999974
Q 027824          136 ------VSTEDGKAFAEQ-----E--------SLYFMETSALDATNVENAFTEVLTQIYKIVS  179 (218)
Q Consensus       136 ------~~~~~~~~~~~~-----~--------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  179 (218)
                            .....+..+...     .        .+..++|||.+..+++.+|..+.+.+.+..-
T Consensus       156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~l  218 (221)
T d1azta2         156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL  218 (221)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             567872569999999999999985347887873145666225629999999999999999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.7e-18  Score=118.35  Aligned_cols=119  Identities=17%  Similarity=0.269  Sum_probs=89.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHH-HHHHHHHCCCCEEEEEE
Q ss_conf             79998699987679898884195788876641169899999989969999999689802344-42465415996999999
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVY   93 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~   93 (218)
                      +|+++|+++||||||+++|+++.+.... ++.+.++....+. ....+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCC-CCEEEEEEEEEEE-EEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf             8999999998989999999809987642-8702789999996-4543544442021123433015666554305563477


Q ss_pred             ECCCHHHH-HHHHHHHHHH-HH--HCCCCCCEEEEEECCCCCCCCC
Q ss_conf             79995669-9999999999-86--1699980999984788889864
Q 027824           94 DVTRHATF-QNVGRWLREL-RE--HTDPNIIVMLIGNKTDLRHLVA  135 (218)
Q Consensus        94 d~~~~~s~-~~l~~~~~~~-~~--~~~~~~p~iiv~nK~Dl~~~~~  135 (218)
                      |+++..++ .....|+..+ ..  .....+|++|++||+|+.....
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf             7666534599999999999976887515894799998854678889

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=1.3e-19  Score=124.52  Aligned_cols=150  Identities=21%  Similarity=0.207  Sum_probs=97.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCH---------------HHHHHH
Q ss_conf             79998699987679898884195788876641169899999989969999999689802---------------344424
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE---------------RYRAIT   79 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------------~~~~~~   79 (218)
                      .|+++|.++||||||+|+|++........+..+.+  ...+...+    +.++|+||..               ......
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCEEECCCCEEEC--CCCCCCCC----CEECCCCCCEECCCCCCCCCCCCCHHHHHHH
T ss_conf             89999999988999999996898535278977204--54244223----1100367750012111112222102456666


Q ss_pred             HHHHCCCCEEEEEEECCCHHHHHHH----------HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             6541599699999979995669999----------999999986169998099998478888986448899999999769
Q 027824           80 SAYYRGAVGALLVYDVTRHATFQNV----------GRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES  149 (218)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~l----------~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  149 (218)
                      ....+.+|++++|+|..........          ..++..+.   ..+.|+++|+||+|+....+..   ...+.....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~~~~~---~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---ELDIPTIVAVNKLDKIKNVQEV---INFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HTTCCEEEEEECGGGCSCHHHH---HHHHHHHHT
T ss_pred             HHCCCCCCHHEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHH---HCCCCEEEEEEEEEHHHHHHHH---HHHHHHHHC
T ss_conf             5301113300266422355101113433132077899999999---8499889987643224357889---999999845


Q ss_pred             -------CEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             -------919997169999989999999999999
Q 027824          150 -------LYFMETSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       150 -------~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (218)
                             ..++.+||+++.|++++++.|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             6511268738999778898999999999987569

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.80  E-value=1.8e-19  Score=123.80  Aligned_cols=161  Identities=17%  Similarity=0.182  Sum_probs=104.0

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEE----------------EECCEEEEEEEEECCCCHHHHHHH
Q ss_conf             9998699987679898884195788876641169899999----------------989969999999689802344424
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSL----------------RIDNKVVKAQIWDTAGQERYRAIT   79 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~~~~~i~D~~G~~~~~~~~   79 (218)
                      |+++|++++|||||+++|++...........+........                .+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCC
T ss_conf             99996998549999999982366001457454531531232101223444332100110111342234641100000111


Q ss_pred             HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCH--------------------H
Q ss_conf             65415996999999799956699999999999861699980999984788889864488--------------------9
Q 027824           80 SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST--------------------E  139 (218)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--------------------~  139 (218)
                      ...+..+|++++|+|+.++-..... ..+..+..   .+.|+|+++||.|+........                    .
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQ-EALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             HHCCCCCCEEEEEEECCCCCCCCHH-HHHHHHHC---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             0001246458999861237632025-77777643---7975999998930788145544678887542030888989999


Q ss_pred             HH----HHHHHH--------------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99----999997--------------699199971699999899999999999999744
Q 027824          140 DG----KAFAEQ--------------ESLYFMETSALDATNVENAFTEVLTQIYKIVSK  180 (218)
Q Consensus       140 ~~----~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  180 (218)
                      ..    ..+...              ..++++.+||.+|.|++++++.+.....+...+
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999998665666512310015777499934898989999999999999999998

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=6.8e-20  Score=126.11  Aligned_cols=149  Identities=20%  Similarity=0.228  Sum_probs=100.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHH---------HHHHHHHH
Q ss_conf             5799986999876798988841957888-7664116989999998996999999968980234---------44246541
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLE-SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY---------RAITSAYY   83 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~   83 (218)
                      +||+++|.+++|||||+|+|++...... ..+..+...........+  ..+.+||+||....         .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEECC--EEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             98999999999999999999589963553035632111047997589--0588616666125770077889999999999


Q ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf             59969999997999566999999999998616999809999847888898644889999999976991999716999998
Q 027824           84 RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNV  163 (218)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  163 (218)
                      ..+|++++|+|++++........+ ..+     ...++++++||.|+....  ..++..+ ....+.+++++||++++|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~~~--~~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEKI--NEEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCCC--CHHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             HHCCEEEEEEECCCCCCHHHHHHH-HHC-----CCCCCEEEEEECCCCCHH--HHHHHHH-HHCCCCCEEEEECCCCCCH
T ss_conf             869999999747888625666653-312-----243100234301343303--4699999-8479996799978899899


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q 027824          164 ENAFTEVLTQ  173 (218)
Q Consensus       164 ~~~~~~i~~~  173 (218)
                      ++++++|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHC
T ss_conf             9999999763

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=1.5e-19  Score=124.24  Aligned_cols=156  Identities=17%  Similarity=0.106  Sum_probs=99.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHH----HHH---HHHHCCC
Q ss_conf             579998699987679898884195788876641169899999989969999999689802344----424---6541599
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR----AIT---SAYYRGA   86 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~---~~~~~~~   86 (218)
                      .+|+++|.++||||||+|+|++........+..+.........+.+. ..+.+||+||.....    .+.   ...+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCEEEEEECEEEECCC-CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             86999899998799999999689973555898447565450573189-68998147875567607789999999999985


Q ss_pred             CEEEEEEECCCHHHH---HHHHH--HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH--CCCEEEEECCCC
Q ss_conf             699999979995669---99999--99999861699980999984788889864488999999997--699199971699
Q 027824           87 VGALLVYDVTRHATF---QNVGR--WLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ--ESLYFMETSALD  159 (218)
Q Consensus        87 d~~i~v~d~~~~~s~---~~l~~--~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~  159 (218)
                      +.++++++.......   +....  ...........+.|+++|+||+|+....    +..+.+...  .+.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             HHHHHEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHCCCCCHHHHH----HHHHHHHHHHCCCCCEEEEECCC
T ss_conf             54552012103433102333223321010001110378602310124327689----99999999732699489997888


Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             999899999999999
Q 027824          160 ATNVENAFTEVLTQI  174 (218)
Q Consensus       160 ~~~i~~~~~~i~~~~  174 (218)
                      +.|+++++..|.+.+
T Consensus       157 g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         157 REGLRELLFEVANQL  171 (185)
T ss_dssp             SSTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
T ss_conf             989999999999961

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=3.1e-18  Score=116.91  Aligned_cols=160  Identities=15%  Similarity=0.113  Sum_probs=98.5

Q ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCH----------HH-
Q ss_conf             9887434579998699987679898884195788876641169899999989969999999689802----------34-
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----------RY-   75 (218)
Q Consensus         7 ~~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~-   75 (218)
                      .-|.+...+|+++|.+++|||||+|+|++...........+.+...........   +.+.|+++..          .. 
T Consensus        17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~   93 (195)
T d1svia_          17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE---LHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT---EEEEECCCBCCCSSCHHHHHHHH
T ss_pred             HCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCC---CEEEEEEEECCCCCCCCCCCHHH
T ss_conf             799889989999899998799999985298746886034651230121124543---13788875133211222111036


Q ss_pred             --HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH----CC
Q ss_conf             --442465415996999999799956699999999999861699980999984788889864488999999997----69
Q 027824           76 --RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ----ES  149 (218)
Q Consensus        76 --~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~  149 (218)
                        ..........++++++++|+..+..- ....++..+..   .+.|+++|+||+|+....+.. +....+...    .+
T Consensus        94 ~~~~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~  168 (195)
T d1svia_          94 RMIETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY---YGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTT
T ss_pred             HHHHHHHCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCC---CCCCCEECHHHCCCCCHHHHH-HHHHHHHHHHCCCCC
T ss_conf             6776543112110122221201456421-22211000002---557511000120325888899-999999998641699


Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             9199971699999899999999999
Q 027824          150 LYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       150 ~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (218)
                      .+++.+||.++.|+++++++|.+.+
T Consensus       169 ~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         169 DELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9789996889989999999999982

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.76  E-value=2.2e-17  Score=112.25  Aligned_cols=163  Identities=20%  Similarity=0.185  Sum_probs=108.6

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC-----CCCEEEEEEEEEE-------------------ECCEEEEEE
Q ss_conf             7434579998699987679898884195788876-----6411698999999-------------------899699999
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-----STIGVEFATRSLR-------------------IDNKVVKAQ   65 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~-----~t~~~~~~~~~~~-------------------~~~~~~~~~   65 (218)
                      +...++|+++|+.++|||||+++|++........     -+....+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEE
T ss_conf             89957999993458849999999970344666899971765333421222313530210342256655410205750476


Q ss_pred             EEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC--CHHHHHH
Q ss_conf             99689802344424654159969999997999566999999999998616999809999847888898644--8899999
Q 027824           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--STEDGKA  143 (218)
Q Consensus        66 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~  143 (218)
                      ++|+||+..|.......+..+|++++++|+.++.......+.+..+....  ..++|++.||.|+.+....  ......+
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             52431035566776533222233100001135666531679999999823--7552345412330246888879999999


Q ss_pred             HHHHC---CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             99976---99199971699999899999999999
Q 027824          144 FAEQE---SLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       144 ~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (218)
                      +....   .++++.+||.+|+|++++++.+.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             9630047988699987788979899999989778

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.74  E-value=1.1e-16  Score=108.37  Aligned_cols=162  Identities=15%  Similarity=0.147  Sum_probs=103.9

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC---CCCEEEEE--EEEEEE------------------------CCEE
Q ss_conf             434579998699987679898884195788876---64116989--999998------------------------9969
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK---STIGVEFA--TRSLRI------------------------DNKV   61 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~---~t~~~~~~--~~~~~~------------------------~~~~   61 (218)
                      ...++|+++|+..+|||||+++|++........   .....+..  ......                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCE
T ss_conf             99708999972488699999999704121228898760221036134335656654332025411342344331025643


Q ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC--HH
Q ss_conf             9999996898023444246541599699999979995669999999999986169998099998478888986448--89
Q 027824           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS--TE  139 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~  139 (218)
                      ..+.+.|+||+..|.......+..+|++++|+|+.++-.....+..+..+...  ...|+||+.||.|+....+..  ..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf             78898426138888764014250266442000001401332678999999981--9832654145678765147899999


Q ss_pred             HHHHHHHHC---CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             999999976---99199971699999899999999999
Q 027824          140 DGKAFAEQE---SLYFMETSALDATNVENAFTEVLTQI  174 (218)
Q Consensus       140 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (218)
                      +...+....   +++++.+||++|.|++++++.|.+.+
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             99998531168988699976788878499999888528

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.72  E-value=2e-17  Score=112.44  Aligned_cols=156  Identities=19%  Similarity=0.097  Sum_probs=105.2

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCC----------------CCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHH
Q ss_conf             3457999869998767989888419----------------578887664116989999998996999999968980234
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKN----------------EFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY   75 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   75 (218)
                      ..++|+++|+.++|||||+++|++.                ....+  ...+++.......+......+.++|+||+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~E--r~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEE--RARGITINAAHVEYSTAARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEE--EETTEEEECEEEEEECSSCEEEEEECSSHHHH
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHH--CCCCCCCCCCEEEEEECEEEEEEECCCCHHHH
T ss_conf             9718999958898099999999999987376125565410465655--07884177236999812156875237316778


Q ss_pred             HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC---HHHHHHHHHHCC---
Q ss_conf             44246541599699999979995669999999999986169998099998478888986448---899999999769---
Q 027824           76 RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS---TEDGKAFAEQES---  149 (218)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~---  149 (218)
                      .......+..+|++++|+|+.++..-+ ....+..+...  ...|+|++.||.|+..+.+..   ..+.+.+....+   
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHHHHHHH--CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999875437679999868887634-89999999985--588489998556566608789999999999999719995


Q ss_pred             --CEEEEECCCCC----------CCHHHHHHHHHH
Q ss_conf             --91999716999----------998999999999
Q 027824          150 --LYFMETSALDA----------TNVENAFTEVLT  172 (218)
Q Consensus       150 --~~~~~~Sa~~~----------~~i~~~~~~i~~  172 (218)
                        ++++.+|+.++          .++.++|+.+.+
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             55879998945264656844463788999999985

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2e-16  Score=106.95  Aligned_cols=158  Identities=22%  Similarity=0.149  Sum_probs=98.6

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEE-EEEEEEEEECCEEEEEEEEECCCCHHHHH---------HH
Q ss_conf             743457999869998767989888419578887664116-98999999899699999996898023444---------24
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGV-EFATRSLRIDNKVVKAQIWDTAGQERYRA---------IT   79 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~   79 (218)
                      +.+.-.|+++|.++||||||+|+|++...........+. .........+..  .+..+|++|......         ..
T Consensus         2 ~~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T d1egaa1           2 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAA   79 (179)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEEEEEEEEECCCC--EEEEECCCCCEECCHHHHHHHHHHCC
T ss_conf             8536199999799998999999995898634326887137888755505873--14760488730110234444432102


Q ss_pred             HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC-CEEEEECCC
Q ss_conf             6541599699999979995669999999999986169998099998478888986448899999999769-919997169
Q 027824           80 SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSAL  158 (218)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  158 (218)
                      ......+++++++.|..+....  ...+...+.   ....|.++++||.|..............+....+ .+++++||+
T Consensus        80 ~~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~  154 (179)
T d1egaa1          80 SSSIGDVELVIFVVEGTRWTPD--DEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  154 (179)
T ss_dssp             TSCCCCEEEEEEEEETTCCCHH--HHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             CCCHHHCCEEEEEEECCCCCHH--HHHHHHHHH---HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             2102114446798745766226--789987754---13575155554344121024566676666642389978998276


Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             9999899999999999
Q 027824          159 DATNVENAFTEVLTQI  174 (218)
Q Consensus       159 ~~~~i~~~~~~i~~~~  174 (218)
                      ++.|++++++.|.+.+
T Consensus       155 ~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         155 TGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTTHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHC
T ss_conf             8989999999999748

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.68  E-value=5.6e-16  Score=104.43  Aligned_cols=153  Identities=25%  Similarity=0.251  Sum_probs=100.6

Q ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCC---------------------------------CCCCCCEEEEEEE
Q ss_conf             9887434579998699987679898884195788---------------------------------8766411698999
Q 027824            7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL---------------------------------ESKSTIGVEFATR   53 (218)
Q Consensus         7 ~~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~---------------------------------~~~~t~~~~~~~~   53 (218)
                      +.++...+||+++|+..+|||||+.+|+......                                 +.....+.+....
T Consensus         3 ~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~   82 (222)
T d1zunb3           3 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   82 (222)
T ss_dssp             STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCCCEEEEE
T ss_conf             21137755599993789898999999999869835678899998898628654412210014641344315877315578


Q ss_pred             EEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCC
Q ss_conf             9998996999999968980234442465415996999999799956699999999999861699980-999984788889
Q 027824           54 SLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRH  132 (218)
Q Consensus        54 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~  132 (218)
                      .....  ...+.++|+||+..|..........+|++++|+|+.++..-+. ...+..+..   .+++ +|++.||.|+.+
T Consensus        83 ~~~~~--~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~~~---~gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3          83 YFSTA--KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL---LGIKHIVVAINKMDLNG  156 (222)
T ss_dssp             EEECS--SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEEECTTTTT
T ss_pred             EEECC--CEEEEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCH-HHHHHHHHH---CCCCEEEEEEECCCCCC
T ss_conf             98415--2379998166325543332146655766898720456766333-899999998---39987999987001455


Q ss_pred             CCCCCHH----HHHHHHHHCCC-----EEEEECCCCCCCHHH
Q ss_conf             8644889----99999997699-----199971699999899
Q 027824          133 LVAVSTE----DGKAFAEQESL-----YFMETSALDATNVEN  165 (218)
Q Consensus       133 ~~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~i~~  165 (218)
                      ..+..+.    +...+....++     +++.+||.+|+|+.+
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         157 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             CCCEEHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
T ss_conf             520000356777765567520489960899977546746875

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=1.1e-15  Score=102.82  Aligned_cols=115  Identities=17%  Similarity=0.214  Sum_probs=82.3

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCC------------------CCCCCEEEEEEEEEEECCEEEEEEEEECCCC
Q ss_conf             4345799986999876798988841957888------------------7664116989999998996999999968980
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE------------------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      +...+|+++|+.++|||||+.+++.......                  ....+++.........++  .++.++||||+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~   81 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGH   81 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSS
T ss_pred             HHCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEECCHHHHHCCCCCCCCEEEECCCC--EEEEEECCCCH
T ss_conf             0202999995898998999999999648534023365184698565888751886001123431598--38999527860


Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             23444246541599699999979995669999999999986169998099998478888
Q 027824           73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~  131 (218)
                      .+|.......++.+|+.++|+|+.++-.......| ....   ..+.|.++++||.|..
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~---~~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAE---KYKVPRIAFANKMDKT  136 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHH---TTTCCEEEEEECTTST
T ss_pred             HHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHH-HHHH---HCCCCEEEEEECCCCC
T ss_conf             22699999999963005773225677446699999-9999---8599979998644565

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=2.4e-15  Score=100.90  Aligned_cols=141  Identities=18%  Similarity=0.108  Sum_probs=91.7

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCC-----------------CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH
Q ss_conf             345799986999876798988841957-----------------888766411698999999899699999996898023
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEF-----------------NLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER   74 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   74 (218)
                      ..++|+++|++++|||||+++|+....                 +++....++++.....+..++  .++.++||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHCCCEEEEEEEEEEEECC--EEEEEEECCCCHH
T ss_conf             97199999478984999999999985230477411354311345577558757984379997088--1899982898265


Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCCCC---CHHHHHHHHHHCC-
Q ss_conf             4442465415996999999799956699999999999861699980-9999847888898644---8899999999769-
Q 027824           75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAV---STEDGKAFAEQES-  149 (218)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~-  149 (218)
                      |.......+..+|++++|+|+.++...+...-| ..+..   .++| +|+++||.|+.+..+.   -..+++.+....+ 
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~---~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH-HHHHH---CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             499999999878999999989999847899999-99998---59993899998536679889999999999999874499


Q ss_pred             ----CEEEEECCC
Q ss_conf             ----919997169
Q 027824          150 ----LYFMETSAL  158 (218)
Q Consensus       150 ----~~~~~~Sa~  158 (218)
                          ++++..|+.
T Consensus       156 ~~~~i~~i~~sa~  168 (204)
T d2c78a3         156 PGDEVPVIRGSAL  168 (204)
T ss_dssp             CTTTSCEEECCHH
T ss_pred             CCCCCEEEEEECH
T ss_conf             9654234002322

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.62  E-value=4.8e-15  Score=99.27  Aligned_cols=113  Identities=16%  Similarity=0.180  Sum_probs=80.9

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCC------------------CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH
Q ss_conf             45799986999876798988841957888------------------766411698999999899699999996898023
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLE------------------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER   74 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   74 (218)
                      ..+|+++|+.++|||||+.+++.......                  .....++.........++  .++.++||||+.+
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~d   79 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCHHCCCCCCCHHHHHHHCCEEEEECCCCCCCC--CCEEEECCCCHHH
T ss_conf             50999994889809999999999709755306622221135626988873876875102222343--2106880681554


Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             444246541599699999979995669999999999986169998099998478888
Q 027824           75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~  131 (218)
                      |.......++.+|+.++|+|+.++-.......|. .+..   .+.|.++++||.|..
T Consensus        80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          80 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEECGGGC
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHH-HHHH---CCCCCCCCCCCCCCC
T ss_conf             3355654312467338984235774211578877-6554---044310133320222

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=2.8e-15  Score=100.59  Aligned_cols=164  Identities=14%  Similarity=0.070  Sum_probs=91.2

Q ss_pred             CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCH-------HHHHH
Q ss_conf             99887434579998699987679898884195788876641169899999989969999999689802-------34442
Q 027824            6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE-------RYRAI   78 (218)
Q Consensus         6 ~~~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~   78 (218)
                      ...|.+..++|+++|.++||||||+|++++...........+................+..++..+..       .....
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             HHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCEEECCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             67997669789998899998999999985898547545666502311101114654203420012211024454444455


Q ss_pred             HH---HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC--HHHHHHHHHHC--CCE
Q ss_conf             46---541599699999979995669999999999986169998099998478888986448--89999999976--991
Q 027824           79 TS---AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS--TEDGKAFAEQE--SLY  151 (218)
Q Consensus        79 ~~---~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~  151 (218)
                      ..   ......+.++.+.+........ ...++..+..   ...++++++||.|+.......  .+..++.....  ..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHHHHHHHEEEEEEEECCCCCCHHH-HHHHHHHHHH---CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             565565420035899840122331267-7788887640---332220111333115888899999999999986089981


Q ss_pred             EEEECCCCCCCHHHHHHHHHHH
Q ss_conf             9997169999989999999999
Q 027824          152 FMETSALDATNVENAFTEVLTQ  173 (218)
Q Consensus       152 ~~~~Sa~~~~~i~~~~~~i~~~  173 (218)
                      ++.+||++|.|++++++.|.+.
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             8999679998899999999997

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.7e-15  Score=101.77  Aligned_cols=117  Identities=19%  Similarity=0.253  Sum_probs=80.4

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHH----HCCCC
Q ss_conf             34579998699987679898884195788876641169899999989969999999689802344424654----15996
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAY----YRGAV   87 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d   87 (218)
                      +...|+++|+++||||||+|+|+++.+.+    +.+.+.....  +......+.+||+||+..+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEE--TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCC----EEEECCEEEE--EEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             98899999999988999999996799998----2776242899--98588489998525553213679999988764124


Q ss_pred             EEEEEEECCC-HHHHHHHHHHH----HHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             9999997999-56699999999----99986169998099998478888986
Q 027824           88 GALLVYDVTR-HATFQNVGRWL----RELREHTDPNIIVMLIGNKTDLRHLV  134 (218)
Q Consensus        88 ~~i~v~d~~~-~~s~~~l~~~~----~~~~~~~~~~~p~iiv~nK~Dl~~~~  134 (218)
                      .++++++..+ ..+++....|+    ..+......+.|+++++||+|+....
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
T ss_conf             5624899734623399999999999999999874369869999800345567

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.1e-13  Score=91.62  Aligned_cols=158  Identities=9%  Similarity=0.130  Sum_probs=90.6

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC---EEEEEEEEEEECCEEEEEEEEECCCCHHHHH-----HHHHHH
Q ss_conf             34579998699987679898884195788876641---1698999999899699999996898023444-----246541
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTI---GVEFATRSLRIDNKVVKAQIWDTAGQERYRA-----ITSAYY   83 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~   83 (218)
                      ..++|+++|.+|+|||||+|+|++...........   +.+.....+...+ ...+.+|||||......     +....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCC-CCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             771799989999978999999958886777567899988704455311068-9707998379854333449999987433


Q ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC-------CCCCCHHH----HH----HHHHHC
Q ss_conf             5996999999799956699999999999861699980999984788889-------86448899----99----999976
Q 027824           84 RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH-------LVAVSTED----GK----AFAEQE  148 (218)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-------~~~~~~~~----~~----~~~~~~  148 (218)
                      ..+|.++++.|..-.+  .. ..+...+..   .+.|+++|.||+|...       ......+.    .+    +.....
T Consensus       134 ~~~d~~l~~~~~~~~~--~d-~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKK--ND-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCH--HH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCEEEEEECCCCCCH--HH-HHHHHHHHH---CCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             2265999965888878--89-999999997---69987999708632101354322011227889999999999999874


Q ss_pred             CC---EEEEECCCCC--CCHHHHHHHHHHHHHH
Q ss_conf             99---1999716999--9989999999999999
Q 027824          149 SL---YFMETSALDA--TNVENAFTEVLTQIYK  176 (218)
Q Consensus       149 ~~---~~~~~Sa~~~--~~i~~~~~~i~~~~~~  176 (218)
                      +.   ++|.+|..+.  .++.++.+.+.+.+.+
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             899897797337764515899999999998399

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=4.4e-14  Score=93.94  Aligned_cols=148  Identities=14%  Similarity=0.110  Sum_probs=97.1

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCC-------------------------------CCCCCCCEEEEEEEEEEECCEE
Q ss_conf             457999869998767989888419578-------------------------------8876641169899999989969
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFN-------------------------------LESKSTIGVEFATRSLRIDNKV   61 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~   61 (218)
                      .++|+++|+..+|||||+.+|+...-.                               .+....++++.....+  ....
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~--~~~~   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF--ETPK   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE--ECSS
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCEECCCCCEEEE--CCCC
T ss_conf             54799994789989999999999818966889999999999836876420000353024322400124420476--2499


Q ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHH------HHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCC
Q ss_conf             9999996898023444246541599699999979995669------9999999999861699980-99998478888986
Q 027824           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATF------QNVGRWLRELREHTDPNII-VMLIGNKTDLRHLV  134 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~l~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~  134 (218)
                      .++.+.|+||+.+|.......+..+|+.++|+|+.++.--      .+....+.....   .++| +|+++||.|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~---~gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEECCCCCCCC
T ss_conf             8999998989688899999999975889999989988541455731769999999998---4998089999888788888


Q ss_pred             CCCH----HHHHHHHHHCC-----CEEEEECCCCCCCHHH
Q ss_conf             4488----99999999769-----9199971699999899
Q 027824          135 AVST----EDGKAFAEQES-----LYFMETSALDATNVEN  165 (218)
Q Consensus       135 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  165 (218)
                      +..+    .+...+....+     ++++.+|+..+.|+-+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEE
T ss_conf             8999999998999997418998817999988547776552

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=8.6e-14  Score=92.34  Aligned_cols=154  Identities=18%  Similarity=0.133  Sum_probs=96.1

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCC-------------------------------CCCCCCCEEEEEEEEEEEC
Q ss_conf             743457999869998767989888419578-------------------------------8876641169899999989
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFN-------------------------------LESKSTIGVEFATRSLRID   58 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~   58 (218)
                      ....++|+++|+..+|||||+.+|+...-.                               .+.....+++.....  +.
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~--~~   98 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY--FE   98 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE--EE
T ss_pred             CCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC--CC
T ss_conf             9982499999527989999999999984994588999999887742775421134430233112468655444221--21


Q ss_pred             CEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHH------HHHHHHHHHHHHCCCCC-CEEEEEECCCCC
Q ss_conf             96999999968980234442465415996999999799956699------99999999986169998-099998478888
Q 027824           59 NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQ------NVGRWLRELREHTDPNI-IVMLIGNKTDLR  131 (218)
Q Consensus        59 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~l~~~~~~~~~~~~~~~-p~iiv~nK~Dl~  131 (218)
                      .....+.+.|+||+..|..........+|+.++|+|+.++..-.      ...+.+..+..   .++ +++++.||.|+.
T Consensus        99 ~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3          99 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEP  175 (245)
T ss_dssp             CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTST
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH---CCCCEEEEEEECCCCC
T ss_conf             1331035542555544236665214430300467874777667765332022999999998---5999599999768877


Q ss_pred             CC--CCCCHHH----HHHHHHHC-------CCEEEEECCCCCCCHHHHHH
Q ss_conf             98--6448899----99999976-------99199971699999899999
Q 027824          132 HL--VAVSTED----GKAFAEQE-------SLYFMETSALDATNVENAFT  168 (218)
Q Consensus       132 ~~--~~~~~~~----~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~  168 (218)
                      ..  .+..+++    ...+..+.       .++++.+||.+|+|+.++++
T Consensus       176 ~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         176 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHH
T ss_conf             53121788999999999999998375765688799946667879512100

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.50  E-value=8.3e-14  Score=92.42  Aligned_cols=149  Identities=19%  Similarity=0.187  Sum_probs=96.4

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCC-------------------------------CCCCCCCCEEEEEEEEEEECCEE
Q ss_conf             45799986999876798988841957-------------------------------88876641169899999989969
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEF-------------------------------NLESKSTIGVEFATRSLRIDNKV   61 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~   61 (218)
                      .++|+++|+.++|||||+.+|+...-                               ..+...  +.+.......+....
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~r--g~ti~~~~~~~~~~~   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER--GVTINLTFMRFETKK   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECSS
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC--CCCCCCEEEEEECCC
T ss_conf             518999944799999999999998598328899999998875176655542014573344147--765242179995188


Q ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHH------HHHHHHHHHHHHCCCCCCEEEEEECCCCCCC--
Q ss_conf             99999968980234442465415996999999799956699------9999999998616999809999847888898--
Q 027824           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQ------NVGRWLRELREHTDPNIIVMLIGNKTDLRHL--  133 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--  133 (218)
                      +.+.++|+||+..|.......+..+|+.++|+|+.++....      ...+.+......  ...++|++.||.|+...  
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTT
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCC
T ss_conf             12687518984878999999997506579987415575454224442249999999980--9983489998035777531


Q ss_pred             CCCCH----HHHHHHHHHCC-----CEEEEECCCCCCCHHH
Q ss_conf             64488----99999999769-----9199971699999899
Q 027824          134 VAVST----EDGKAFAEQES-----LYFMETSALDATNVEN  165 (218)
Q Consensus       134 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  165 (218)
                      .+...    .+...+...++     ++++.+||..+.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             17888877999876787618985667099977457888135

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=1.3e-13  Score=91.35  Aligned_cols=118  Identities=21%  Similarity=0.209  Sum_probs=82.8

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCC----------------CCCCCCCCEEEEEEEEEEE--------------CC
Q ss_conf             74345799986999876798988841957----------------8887664116989999998--------------99
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEF----------------NLESKSTIGVEFATRSLRI--------------DN   59 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~--------------~~   59 (218)
                      .++..+|+++|+.++|||||+.+|+....                ..+....+++.........              ++
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCCCCCCCCHHCCCCC
T ss_conf             31674899996888869999999999779866355632322446456775683696787899942676554201002356


Q ss_pred             EEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             699999996898023444246541599699999979995669999999999986169998099998478888
Q 027824           60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR  131 (218)
Q Consensus        60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~  131 (218)
                      ..+.+.++||||+.+|.......++.+|+.++|+|+.++-..+...-|.....    .+.|+++++||.|..
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCC
T ss_conf             65379997378738899999988752372499986566820469999999987----699869998772655

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.41  E-value=1.1e-12  Score=86.15  Aligned_cols=126  Identities=13%  Similarity=0.049  Sum_probs=75.4

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCEEEEEEEEEEECCEEEEEEEEECCCCHHH-------HHHHHH-
Q ss_conf             434579998699987679898884195788876-64116989999998996999999968980234-------442465-
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDTAGQERY-------RAITSA-   81 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~-   81 (218)
                      ...++|+++|.+|+|||||+|.+++........ +..+.+.........+  ..+.++||||..+.       ...... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEECC--EEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             78748999899998699999998589841335889760467898898633--8899975213467752489999999999


Q ss_pred             -HHCCCCEEEEEEECCCH-HH--HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf             -41599699999979995-66--999999999998616999809999847888898644889
Q 027824           82 -YYRGAVGALLVYDVTRH-AT--FQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTE  139 (218)
Q Consensus        82 -~~~~~d~~i~v~d~~~~-~s--~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  139 (218)
                       .....++++||++++.. -+  -.....++..+... ....++|+|.||.|...+.....+
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~-~~~~~~ivv~t~~D~~~~~~~~~e  168 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK-GIWNKAIVALTHAQFSPPDGLPYD  168 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCH-HHHHCEEEEEECCCCCCCCCCCHH
T ss_conf             8568987699999788877899999999999987326-566388999988644776888699

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.30  E-value=1.1e-11  Score=80.63  Aligned_cols=156  Identities=13%  Similarity=0.084  Sum_probs=90.9

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCC-----------CCC-----------C----CCEEEEEEEEEEEC------
Q ss_conf             434579998699987679898884195788-----------876-----------6----41169899999989------
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-----------ESK-----------S----TIGVEFATRSLRID------   58 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~-----------~~~-----------~----t~~~~~~~~~~~~~------   58 (218)
                      ...++|.+.|+||+|||||+++|.......           ...           .    ......+.......      
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCH
T ss_conf             98159861179988899999999998763687513443465547877506410133788750344011266534533110


Q ss_pred             ------------CEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             ------------96999999968980234442465415996999999799956699999999999861699980999984
Q 027824           59 ------------NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN  126 (218)
Q Consensus        59 ------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~n  126 (218)
                                  ...+.+.+++|.|.-.....   ...-+|.+++|..+..++..+.+..-   +..     ..-++|+|
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~g---ilE-----~aDi~vvN  197 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKG---IFE-----LADMIAVN  197 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTT---HHH-----HCSEEEEE
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHH---HHCCCCEEEEEEECCCHHHHHHHHHH---HHH-----HHHEEEEE
T ss_conf             67789999764148998589863233321466---53366548998614324556563234---765-----40204675


Q ss_pred             CCCCCCCCCCCHHHHHHHHHH----------CCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             788889864488999999997----------699199971699999899999999999999
Q 027824          127 KTDLRHLVAVSTEDGKAFAEQ----------ESLYFMETSALDATNVENAFTEVLTQIYKI  177 (218)
Q Consensus       127 K~Dl~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (218)
                      |.|+.+..........++...          +..+++.+||.+++|+++++++|.......
T Consensus       198 KaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         198 KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             4245430689999999999986345554457877369998217998799999999999999

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.29  E-value=4.1e-11  Score=77.51  Aligned_cols=146  Identities=16%  Similarity=0.108  Sum_probs=91.3

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCE-------------E--EEEEEEECCCC----H
Q ss_conf             457999869998767989888419578887664116989999998996-------------9--99999968980----2
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-------------V--VKAQIWDTAGQ----E   73 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-------------~--~~~~i~D~~G~----~   73 (218)
                      .++|.++|.|+||||||++++++........|+.+++.....+.+.+.             .  ..+.+.|+||.    .
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf             83488889999988999999977997413699888778458996435868989774388845521689997263178853


Q ss_pred             HHHHHHH---HHHCCCCEEEEEEECCCH----------HHHHH-------HHHHHHHHH--------HH-----------
Q ss_conf             3444246---541599699999979995----------66999-------999999998--------61-----------
Q 027824           74 RYRAITS---AYYRGAVGALLVYDVTRH----------ATFQN-------VGRWLRELR--------EH-----------  114 (218)
Q Consensus        74 ~~~~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~-------l~~~~~~~~--------~~-----------  114 (218)
                      +-..+..   ..++.+|++++|+++...          +..++       +..|-..+.        +.           
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f~~~di~~~~g~~dP~~Die~I~~EL~l~Dle~lek~~ekl~k~~k~~~~~~~~~  161 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             57876589999998506258885146888776879995979999999999998449999999998760122454014668


Q ss_pred             ----------------------------------CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCC
Q ss_conf             ----------------------------------69998099998478888986448899999999769919997169
Q 027824          115 ----------------------------------TDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL  158 (218)
Q Consensus       115 ----------------------------------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (218)
                                                        .-...|++.+.|..+.........+....++...+..++.+|++
T Consensus       162 ~~~l~~~~~~l~~~~~i~~~~~~~~e~~~l~~l~lLt~KP~i~v~Nv~E~~~~~~~~~~~l~~~~~~~~~~vI~isa~  239 (278)
T d1jala1         162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (278)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf             999999865312222100035775676778765255215255420136001210278999999987659969994799

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.27  E-value=1.5e-12  Score=85.41  Aligned_cols=159  Identities=14%  Similarity=0.037  Sum_probs=88.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC-------------CEEEEEEE--------EE-E-----------E---
Q ss_conf             57999869998767989888419578887664-------------11698999--------99-9-----------8---
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKST-------------IGVEFATR--------SL-R-----------I---   57 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t-------------~~~~~~~~--------~~-~-----------~---   57 (218)
                      +-|+++|++|+|||||+++++...........             ...+....        .. .           .   
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEK   80 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             98999918998399999999998843876899966766445788645309999887877676403677512202867766


Q ss_pred             ----------CCEEEEEEEEECCCCHHHHHHHHH---H--HCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             ----------996999999968980234442465---4--159969999997999---5669999999999986169998
Q 027824           58 ----------DNKVVKAQIWDTAGQERYRAITSA---Y--YRGAVGALLVYDVTR---HATFQNVGRWLRELREHTDPNI  119 (218)
Q Consensus        58 ----------~~~~~~~~i~D~~G~~~~~~~~~~---~--~~~~d~~i~v~d~~~---~~s~~~l~~~~~~~~~~~~~~~  119 (218)
                                ......+.+.|+||+..+......   .  ....+.+++++|+..   +..+...  ++...........
T Consensus        81 ~~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~--~l~~~~~~~~~~~  158 (244)
T d1yrba1          81 FNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFV--RFFALLIDLRLGA  158 (244)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHH--HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHH--HHHHHHHHHHHCC
T ss_conf             89999999841256543654366531478899999999863247658999636556675047669--9999999987078


Q ss_pred             CEEEEEECCCCCCCCCCCHHH--------------------------HHHHHHH--CCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             099998478888986448899--------------------------9999997--699199971699999899999999
Q 027824          120 IVMLIGNKTDLRHLVAVSTED--------------------------GKAFAEQ--ESLYFMETSALDATNVENAFTEVL  171 (218)
Q Consensus       120 p~iiv~nK~Dl~~~~~~~~~~--------------------------~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~  171 (218)
                      |.+++.||.|+..........                          .......  ..++++.+||.+++|+++++..|.
T Consensus       159 ~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~  238 (244)
T d1yrba1         159 TTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAY  238 (244)
T ss_dssp             CEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             74266532014357788899998888999999985336789999999987788637998189987999999999999999


Q ss_pred             HHH
Q ss_conf             999
Q 027824          172 TQI  174 (218)
Q Consensus       172 ~~~  174 (218)
                      +.+
T Consensus       239 e~~  241 (244)
T d1yrba1         239 EHY  241 (244)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             971

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.24  E-value=9.6e-11  Score=75.45  Aligned_cols=86  Identities=16%  Similarity=0.145  Sum_probs=61.0

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEEECCE---------------EEEEEEEECCCCH--
Q ss_conf             345799986999876798988841957-8887664116989999998996---------------9999999689802--
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEF-NLESKSTIGVEFATRSLRIDNK---------------VVKAQIWDTAGQE--   73 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~--   73 (218)
                      +.++|.++|.|+||||||++.+++... ....+|..+++.....+.+.+.               ...+.+.|.+|.-  
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCCEECCCCEEEECCCCCCC
T ss_conf             87379997899998999999997789877478996670387689960663400143105677444254314413544566


Q ss_pred             --HHH---HHHHHHHCCCCEEEEEEECCC
Q ss_conf             --344---424654159969999997999
Q 027824           74 --RYR---AITSAYYRGAVGALLVYDVTR   97 (218)
Q Consensus        74 --~~~---~~~~~~~~~~d~~i~v~d~~~   97 (218)
                        +-.   ......++.+|++++|+++.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCCCCCCHHHHHHHHHCCCEEEEEEECCC
T ss_conf             40135508999998612462699985147

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=1.9e-11  Score=79.33  Aligned_cols=156  Identities=16%  Similarity=0.156  Sum_probs=85.1

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCCEEEEEEE---------EEEE----CCEE--------------
Q ss_conf             743457999869998767989888419578887-66411698999---------9998----9969--------------
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATR---------SLRI----DNKV--------------   61 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~~~~---------~~~~----~~~~--------------   61 (218)
                      ..+.++|.+.|+||+|||||+++|......... ......+..+.         .+..    .+..              
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg  130 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  130 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             69832897438999989999999999997569833220377761000651554136788740565410156555344442


Q ss_pred             ----------------EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             ----------------9999996898023444246541599699999979995669999999999986169998099998
Q 027824           62 ----------------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIG  125 (218)
Q Consensus        62 ----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~  125 (218)
                                      +.+.+.+|.|.....   ..+...+|.+++|..+...+..+.+..-+.++   .     -++|+
T Consensus       131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---a-----Di~Vv  199 (327)
T d2p67a1         131 ASQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV---A-----DLIVI  199 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH---C-----SEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---HHHHHCCCEEEEEECCCCCHHHHHHCHHHHCC---C-----CEEEE
T ss_conf             0332057899988649982787503211210---23440354389973688725555422014201---5-----57999


Q ss_pred             ECCCCCCCCCCC--HHHHHHHHH-------HCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             478888986448--899999999-------769919997169999989999999999999
Q 027824          126 NKTDLRHLVAVS--TEDGKAFAE-------QESLYFMETSALDATNVENAFTEVLTQIYK  176 (218)
Q Consensus       126 nK~Dl~~~~~~~--~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (218)
                      ||.|........  ..+.+....       .+..+++.|||.+++|++++++.|.+....
T Consensus       200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             862255457789999999998632255777776504899841899989999999999999

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=1.2e-10  Score=74.89  Aligned_cols=84  Identities=20%  Similarity=0.218  Sum_probs=57.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEE----------------------ECCEEEEEEEEECCC
Q ss_conf             5799986999876798988841957888766411698999999----------------------899699999996898
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLR----------------------IDNKVVKAQIWDTAG   71 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~----------------------~~~~~~~~~i~D~~G   71 (218)
                      ++|.++|.|+||||||+|++++........|+.+++.......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CCEEEECCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             91768899999899999999788970326997755586262327787046564003686533234555665079998897


Q ss_pred             CHH----HHHHHH---HHHCCCCEEEEEEECCC
Q ss_conf             023----444246---54159969999997999
Q 027824           72 QER----YRAITS---AYYRGAVGALLVYDVTR   97 (218)
Q Consensus        72 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~   97 (218)
                      .-.    -..+..   ..++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             CCCCHHCCCCHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             444300010058999974305527899851556

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=4.4e-09  Score=66.23  Aligned_cols=122  Identities=15%  Similarity=0.157  Sum_probs=72.3

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCEEEEEEEEEEEC---------------------------------
Q ss_conf             4579998699987679898884195788876-641169899999989---------------------------------
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRID---------------------------------   58 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~---------------------------------   58 (218)
                      ..+|+++|..++|||||+|.|++..+.+... +++............                                 
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEECCHHHHHHHHHHHHHHHHC
T ss_conf             88699976898979999999968986887897403578899972356522689868997147889999999999988507


Q ss_pred             ------C--E--------EEEEEEEECCCCH-------------HHHHHHHHHHCCCCE-EEEEEECCCHHHHHHHHHHH
Q ss_conf             ------9--6--------9999999689802-------------344424654159969-99999799956699999999
Q 027824           59 ------N--K--------VVKAQIWDTAGQE-------------RYRAITSAYYRGAVG-ALLVYDVTRHATFQNVGRWL  108 (218)
Q Consensus        59 ------~--~--------~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~l~~~~  108 (218)
                            .  .        ...+.++|+||..             ....+...|+...+. +++|.+.+...+-.....+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             77676776079997479988725771687433466776314799999999998627560356640345421125999999


Q ss_pred             HHHHHHCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             99986169998099998478888986448
Q 027824          109 RELREHTDPNIIVMLIGNKTDLRHLVAVS  137 (218)
Q Consensus       109 ~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  137 (218)
                      ..+   .....++++|.||.|...+....
T Consensus       186 ~~~---~~~~~r~i~Vltk~D~~~~~~~~  211 (299)
T d2akab1         186 KEV---DPQGQRTIGVITKLDLMDEGTDA  211 (299)
T ss_dssp             HHH---CTTCSSEEEEEECGGGSCTTCCC
T ss_pred             HHH---CCCCCCEEEEEECCCCCCCHHHH
T ss_conf             973---86778136677026655313267

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.87  E-value=6.4e-09  Score=65.37  Aligned_cols=117  Identities=15%  Similarity=0.188  Sum_probs=69.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCEEEEEEEE--------------------------------------
Q ss_conf             579998699987679898884195788876-64116989999--------------------------------------
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRS--------------------------------------   54 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~--------------------------------------   54 (218)
                      .+|+++|..++|||||+|.+++..+.+... +++........                                      
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  104 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR  104 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf             85999818989799999999689978878975406888999945776667653065667762688622378999999999


Q ss_pred             --------------------EEECCEEEEEEEEECCCCHH-------------HHHHHHHHHCCCCEEEEEE-ECCCHHH
Q ss_conf             --------------------99899699999996898023-------------4442465415996999999-7999566
Q 027824           55 --------------------LRIDNKVVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVY-DVTRHAT  100 (218)
Q Consensus        55 --------------------~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s  100 (218)
                                          +.... ...+.++|+||...             ...+...|+.+++.+++++ +.+....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         105 DTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHCCCCCCCCCCCEEEEECCCC-CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf             9987427777656650699824789-888068658886443668840358999999999998277751687632563100


Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             9999999999986169998099998478888986
Q 027824          101 FQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV  134 (218)
Q Consensus       101 ~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  134 (218)
                      -.....+...+   ......+++|.||.|.....
T Consensus       184 ~~~~~~~~~~~---~~~~~r~i~Vitk~D~~~~~  214 (306)
T d1jwyb_         184 NSDALQLAKEV---DPEGKRTIGVITKLDLMDKG  214 (306)
T ss_dssp             TCSHHHHHHHH---CSSCSSEEEEEECTTSSCSS
T ss_pred             CCHHHHHHHHH---CCCCCEEEEEEECCCCCCCH
T ss_conf             34999999973---86788589998204445316

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.50  E-value=6.1e-08  Score=59.94  Aligned_cols=60  Identities=22%  Similarity=0.393  Sum_probs=44.0

Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCC
Q ss_conf             8743457999869998767989888419578887664116989999998996999999968980
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ   72 (218)
Q Consensus         9 ~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~   72 (218)
                      .....++|+++|.|+||||||+|++.+....... +..|++.....+..+.   .+.++||||.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEC-CCCCCCCCCEEEECCC---CEEEECCCCC
T ss_conf             7777527899866754435554254266158878-9532245534898799---7599538974

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=2.4e-06  Score=51.11  Aligned_cols=85  Identities=15%  Similarity=0.113  Sum_probs=60.2

Q ss_pred             HHHCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH--HCCCEEEEECC
Q ss_conf             541599699999979995-669999999999986169998099998478888986448899999999--76991999716
Q 027824           81 AYYRGAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE--QESLYFMETSA  157 (218)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~-~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa  157 (218)
                      -...+.|.+++|+++.+| .+...+..|+-....   .+++.+||.||+|+..+..  .+...++..  ..+.+++.+|+
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCT
T ss_pred             CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCCCCCHHH--HHHHHHHHCCCCCCEEEEEECC
T ss_conf             8756688899998678999998999999999998---6997799996766678799--9999975403466136888415


Q ss_pred             CCCCCHHHHHHHH
Q ss_conf             9999989999999
Q 027824          158 LDATNVENAFTEV  170 (218)
Q Consensus       158 ~~~~~i~~~~~~i  170 (218)
                      +++.|++++..++
T Consensus        81 ~~~~g~~~L~~~l   93 (225)
T d1u0la2          81 KTGMGIEELKEYL   93 (225)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
T ss_conf             4415576699995

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=1.1e-05  Score=47.35  Aligned_cols=95  Identities=9%  Similarity=0.076  Sum_probs=65.3

Q ss_pred             HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECC
Q ss_conf             24654159969999997999566999999999998616999809999847888898644889999999976991999716
Q 027824           78 ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA  157 (218)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (218)
                      .....++.+|++++|.|+-+|.+..+  ..+..+   . .+.|.|+|+||+|+.....  .....++....+..++.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~---~-~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDI---L-KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHH---C-SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHHCCEEEEEEECCCCCCCCC--HHHHHH---H-CCCCEEEEEECCCCCCHHH--HHHHHHHHHHCCCCCCEEEC
T ss_conf             99999976999999988889989889--899999---8-6998599998736886677--99999999846986512211


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999899999999999999744
Q 027824          158 LDATNVENAFTEVLTQIYKIVSK  180 (218)
Q Consensus       158 ~~~~~i~~~~~~i~~~~~~~~~~  180 (218)
                      .++.+...+...+...+.+....
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~  102 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEKFDR  102 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             25777532310333222211134

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.03  E-value=7.6e-07  Score=53.86  Aligned_cols=60  Identities=25%  Similarity=0.176  Sum_probs=36.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHH
Q ss_conf             57999869998767989888419578887------6641169899999989969999999689802344
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLES------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR   76 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   76 (218)
                      -..+++|++|||||||+|+|.+.......      .....++.....+.+++..   .++||||..++.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC---EEEECCCCCCCC
T ss_conf             808997889877888877305355501068420048987511331478978991---799687655455

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.03  E-value=7.6e-05  Score=42.79  Aligned_cols=25  Identities=28%  Similarity=0.634  Sum_probs=21.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5799986999876798988841957
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      +||+++|++|+|||||++.+.+...
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf             9899998999389999999981488

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.86  E-value=3.2e-06  Score=50.40  Aligned_cols=86  Identities=14%  Similarity=0.064  Sum_probs=50.1

Q ss_pred             HHCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC--HHHHHHHHHHCCCEEEEECCC
Q ss_conf             41599699999979995-669999999999986169998099998478888986448--899999999769919997169
Q 027824           82 YYRGAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS--TEDGKAFAEQESLYFMETSAL  158 (218)
Q Consensus        82 ~~~~~d~~i~v~d~~~~-~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~  158 (218)
                      ...+.|.+++|+++.+| .+...+..++-....   .+++.+||.||+|+..+.+..  .....+.....|.+++.+|+.
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf             756568899998788999998999999999998---69977999956011364888889999999976445550466248


Q ss_pred             CCCCHHHHHHHH
Q ss_conf             999989999999
Q 027824          159 DATNVENAFTEV  170 (218)
Q Consensus       159 ~~~~i~~~~~~i  170 (218)
                      +++|++++..++
T Consensus        84 ~~~gl~~L~~~l   95 (231)
T d1t9ha2          84 DQDSLADIIPHF   95 (231)
T ss_dssp             HHTTCTTTGGGG
T ss_pred             CHHHHHHHHHHH
T ss_conf             716799999864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=4e-05  Score=44.35  Aligned_cols=143  Identities=13%  Similarity=0.076  Sum_probs=73.0

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCC-------CCCEEEEEEE------EEEECC--------------------
Q ss_conf             4579998699987679898884195788876-------6411698999------999899--------------------
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-------STIGVEFATR------SLRIDN--------------------   59 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~-------~t~~~~~~~~------~~~~~~--------------------   59 (218)
                      .--+++.|.-|+|||||+++++..... ...       ...+++-...      ...+.+                    
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~~~-~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~~   81 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQHG-YKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD   81 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCC-CCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHHHCCCCCCEEEECCCCCEECCCHHHHHHHHHHHH
T ss_conf             788998648889999999999856789-8379997366411223343025665248843884000000367777889999


Q ss_pred             ------EEEEEEEEECCCCHHHHHHHHHH--------HCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             ------69999999689802344424654--------1599699999979995669-99999999998616999809999
Q 027824           60 ------KVVKAQIWDTAGQERYRAITSAY--------YRGAVGALLVYDVTRHATF-QNVGRWLRELREHTDPNIIVMLI  124 (218)
Q Consensus        60 ------~~~~~~i~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~-~~l~~~~~~~~~~~~~~~p~iiv  124 (218)
                            ......++.+.|......+...+        .-..++++.++|+...... .....+...+...      -+++
T Consensus        82 ~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A------D~iv  155 (222)
T d1nija1          82 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRIL  155 (222)
T ss_dssp             HHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTC------SEEE
T ss_pred             HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCC
T ss_conf             9860467765367862242104689999885201444211134021333554444433467899999868------8302


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHC--CCEEEEECCCCCCCHHHHH
Q ss_conf             847888898644889999999976--9919997169999989999
Q 027824          125 GNKTDLRHLVAVSTEDGKAFAEQE--SLYFMETSALDATNVENAF  167 (218)
Q Consensus       125 ~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~  167 (218)
                      +||+|+..+.    +..++..+..  .+++++++ ....+++.+|
T Consensus       156 lNK~Dl~~~~----~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         156 LTKTDVAGEA----EKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             EECTTTCSCT----HHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             CCCCCCCCHH----HHHHHHHHHHHCCCEEEEEE-CCCCCHHHHH
T ss_conf             4464553379----99999999970798499832-7856899950

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.77  E-value=7.4e-05  Score=42.85  Aligned_cols=142  Identities=15%  Similarity=0.135  Sum_probs=75.8

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC----------------------CEEEEEEEEEEEC---------
Q ss_conf             743457999869998767989888419578887664----------------------1169899999989---------
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKST----------------------IGVEFATRSLRID---------   58 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t----------------------~~~~~~~~~~~~~---------   58 (218)
                      ...+.-|+++|++|+||||.+-+|-.... ......                      .++.+.......+         
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~   87 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYK-KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV   87 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHH-HTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf             99998999989999998999999999999-77993699972023551567898740146842230244102447899999


Q ss_pred             ----CEEEEEEEEECCCCHHHHH--H----HHHH--HCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             ----9699999996898023444--2----4654--15996999999799956-69999999999986169998099998
Q 027824           59 ----NKVVKAQIWDTAGQERYRA--I----TSAY--YRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIG  125 (218)
Q Consensus        59 ----~~~~~~~i~D~~G~~~~~~--~----~~~~--~~~~d~~i~v~d~~~~~-s~~~l~~~~~~~~~~~~~~~p~iiv~  125 (218)
                          ...+.+.++||+|...+..  .    ...+  .-..+-+++|++++... ..+....   .+.. .  + +--++.
T Consensus        88 ~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~---~~~~-~--~-~~~lI~  160 (211)
T d1j8yf2          88 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASK---FNQA-S--K-IGTIII  160 (211)
T ss_dssp             HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHH---HHHH-C--T-TEEEEE
T ss_pred             HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHH---HHCC-C--C-CCEEEE
T ss_conf             8740267736998537767631366789999999862597668999843568406778766---5303-6--7-553788


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf             4788889864488999999997699199971699999899
Q 027824          126 NKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVEN  165 (218)
Q Consensus       126 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  165 (218)
                      ||.|...    ..=.+...+...++|+..++.  |+++++
T Consensus       161 TKlDet~----~~G~~l~~~~~~~lPi~~it~--Gq~v~D  194 (211)
T d1j8yf2         161 TKMDGTA----KGGGALSAVAATGATIKFIGT--GEKIDE  194 (211)
T ss_dssp             ECTTSCS----CHHHHHHHHHTTTCCEEEEEC--SSSTTC
T ss_pred             ECCCCCC----CCCHHHHHHHHHCCCEEEEEC--CCCCCC
T ss_conf             6036888----614998899998949799967--998001

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=5.6e-05  Score=43.54  Aligned_cols=144  Identities=19%  Similarity=0.173  Sum_probs=77.0

Q ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC----------------------CEEEEEEEEEEEC-------
Q ss_conf             88743457999869998767989888419578887664----------------------1169899999989-------
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKST----------------------IGVEFATRSLRID-------   58 (218)
Q Consensus         8 ~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t----------------------~~~~~~~~~~~~~-------   58 (218)
                      .+...+.-|+++|++|+||||-+.+|..... ....+.                      .++.+....-.-+       
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~   84 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFD   84 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             7999998999989999988999999999999-779906999601334204678887764327641036777768998788


Q ss_pred             ------CEEEEEEEEECCCCHHHHHHH----HHH---HC-----CCCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCC
Q ss_conf             ------969999999689802344424----654---15-----99699999979995-669999999999986169998
Q 027824           59 ------NKVVKAQIWDTAGQERYRAIT----SAY---YR-----GAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNI  119 (218)
Q Consensus        59 ------~~~~~~~i~D~~G~~~~~~~~----~~~---~~-----~~d~~i~v~d~~~~-~s~~~l~~~~~~~~~~~~~~~  119 (218)
                            ...+.+.++||+|........    ..+   ..     ..+-.++|++.+.. +.+..+...+..+       -
T Consensus        85 ~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~  157 (213)
T d1vmaa2          85 AVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV-------N  157 (213)
T ss_dssp             HHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS-------C
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCC-------C
T ss_conf             789998769998998245533016888899888876642025666502578621234843355656540122-------7


Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf             0999984788889864488999999997699199971699999899
Q 027824          120 IVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVEN  165 (218)
Q Consensus       120 p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  165 (218)
                      +--++.||.|...    ..=.+...+...+.|+..++.  |+++++
T Consensus       158 ~~~lI~TKlDe~~----~~G~~l~~~~~~~~Pi~~i~~--Gq~v~D  197 (213)
T d1vmaa2         158 VTGIILTKLDGTA----KGGITLAIARELGIPIKFIGV--GEKAED  197 (213)
T ss_dssp             CCEEEEECGGGCS----CTTHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred             CCEEEEECCCCCC----CCCHHHHHHHHHCCCEEEEEC--CCCCCC
T ss_conf             8658984246787----623999999997979799968--998001

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.74  E-value=2.7e-06  Score=50.81  Aligned_cols=59  Identities=22%  Similarity=0.154  Sum_probs=34.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCC------CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHH
Q ss_conf             5799986999876798988841957888------76641169899999989969999999689802344
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLE------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR   76 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   76 (218)
                      -..+++|++|||||||+|+|.+......      ......++.....+..++ .   .++||||..++.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g---~iiDTPG~r~~~  162 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-G---LVADTPGFSSLE  162 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT-E---EEESSCSCSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCCCCCCEEEEEEEEEECCC-C---EEEECCCCCCCC
T ss_conf             6499987787348789875151767640355533589712443478886279-7---899787666665

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=0.00018  Score=40.74  Aligned_cols=141  Identities=15%  Similarity=0.159  Sum_probs=75.3

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC----------------------CEEEEEEEEEEEC----------
Q ss_conf             43457999869998767989888419578887664----------------------1169899999989----------
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKST----------------------IGVEFATRSLRID----------   58 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t----------------------~~~~~~~~~~~~~----------   58 (218)
                      ..+.-|+++|++||||||.+.+|-.... ......                      .++.+......-+          
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~   85 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ   85 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             9997999989999998999999999999-779947998232136661204555434338862113568779999999999


Q ss_pred             ---CEEEEEEEEECCCCHHHHHHH-------HHHHC-----CCCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             ---969999999689802344424-------65415-----99699999979995-669999999999986169998099
Q 027824           59 ---NKVVKAQIWDTAGQERYRAIT-------SAYYR-----GAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVM  122 (218)
Q Consensus        59 ---~~~~~~~i~D~~G~~~~~~~~-------~~~~~-----~~d~~i~v~d~~~~-~s~~~l~~~~~~~~~~~~~~~p~i  122 (218)
                         ...+.+.++||+|........       ....+     ..+-+++|.|.+.. +........+..+       -+--
T Consensus        86 ~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~  158 (211)
T d2qy9a2          86 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTG  158 (211)
T ss_dssp             HHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCE
T ss_pred             HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCHHHHHHHHHHCC-------CCCE
T ss_conf             998769988996568876320778999999999985304668600122001235763377876442101-------7864


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf             9984788889864488999999997699199971699999899
Q 027824          123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVEN  165 (218)
Q Consensus       123 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  165 (218)
                      ++.||.|....    .=.+...+...+.|+..++  .|+++++
T Consensus       159 lIlTKlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         159 ITLTKLDGTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             EEEECCTTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             EEEEECCCCCC----CCHHHHHHHHHCCCEEEEE--CCCCCCC
T ss_conf             89961278887----2099999999897979996--7998103

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.68  E-value=0.00014  Score=41.27  Aligned_cols=132  Identities=14%  Similarity=0.077  Sum_probs=71.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCC---------------------CCCEEEEEEEEEEEC-------------CE
Q ss_conf             79998699987679898884195788876---------------------641169899999989-------------96
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESK---------------------STIGVEFATRSLRID-------------NK   60 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~~~~~~---------------------~t~~~~~~~~~~~~~-------------~~   60 (218)
                      -|+++|++||||||.+.+|-.........                     ...++.+....-..+             ..
T Consensus        12 vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~   91 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE   91 (207)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             89998999998899999999999977992799954434640888899999862886311124420367888898887633


Q ss_pred             EEEEEEEECCCCHHHHHH----HHH--HHCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf             999999968980234442----465--415996999999799956-6999999999998616999809999847888898
Q 027824           61 VVKAQIWDTAGQERYRAI----TSA--YYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL  133 (218)
Q Consensus        61 ~~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~-s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  133 (218)
                      .+.+.++||+|.......    +..  ...+.+-+++|.+.+.+. ..+.+..++..+    .   .--++.||.|... 
T Consensus        92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~---~~~~I~TKlDe~~-  163 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G---VTGLVLTKLDGDA-  163 (207)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C---CCEEEEECGGGCS-
T ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHC----C---CCEEEEEECCCCC-
T ss_conf             6764033454420000366889999986318736999843455616899999998647----9---9705886037656-


Q ss_pred             CCCCHHHHHHHHHHCCCEEEEECC
Q ss_conf             644889999999976991999716
Q 027824          134 VAVSTEDGKAFAEQESLYFMETSA  157 (218)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~Sa  157 (218)
                         ..-.+...+...+.|+..++.
T Consensus       164 ---~~G~~l~~~~~~~~Pi~~i~~  184 (207)
T d1ls1a2         164 ---RGGAALSARHVTGKPIYFAGV  184 (207)
T ss_dssp             ---SCHHHHHHHHHHCCCEEEEC-
T ss_pred             ---CCHHHHHHHHHHCCCEEEEEC
T ss_conf             ---531899999997989899937

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.37  E-value=0.00089  Score=36.89  Aligned_cols=134  Identities=13%  Similarity=0.068  Sum_probs=72.5

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC----------------------CEEEEEEEEEEEC------------
Q ss_conf             457999869998767989888419578887664----------------------1169899999989------------
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKST----------------------IGVEFATRSLRID------------   58 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t----------------------~~~~~~~~~~~~~------------   58 (218)
                      ..-|+++|++||||||.+-+|-.... ......                      .++.+.......+            
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~~-~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~   84 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAM   84 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             77999989999988999999999999-77990799981366654026676405456823896167742788999989999


Q ss_pred             -CEEEEEEEEECCCCHHHHHH----HHHH---H-----CCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             -96999999968980234442----4654---1-----599699999979995-66999999999998616999809999
Q 027824           59 -NKVVKAQIWDTAGQERYRAI----TSAY---Y-----RGAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVMLI  124 (218)
Q Consensus        59 -~~~~~~~i~D~~G~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~~-~s~~~l~~~~~~~~~~~~~~~p~iiv  124 (218)
                       ...+.+.++||+|.......    ...+   .     ...+-+++|+|.+.. +....+...+..+.       +--++
T Consensus        85 ~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lI  157 (207)
T d1okkd2          85 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVI  157 (207)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEE
T ss_pred             HHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCC-------CCEEE
T ss_conf             98799999717522231127788887777777653256787359999620047167899997502138-------86489


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCC
Q ss_conf             8478888986448899999999769919997169
Q 027824          125 GNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL  158 (218)
Q Consensus       125 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (218)
                      .||.|.....    =.+...+...+.|+..++.-
T Consensus       158 ~TKlDet~~~----G~~l~~~~~~~~Pi~~i~~G  187 (207)
T d1okkd2         158 VTKLDGTAKG----GVLIPIVRTLKVPIKFVGVG  187 (207)
T ss_dssp             EECTTSSCCC----TTHHHHHHHHCCCEEEEECS
T ss_pred             EECCCCCCCC----CHHHHHHHHHCCCEEEEECC
T ss_conf             8336888873----49999999989797999579

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0037  Score=33.46  Aligned_cols=99  Identities=11%  Similarity=0.020  Sum_probs=53.7

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCCC-----CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHH-------H-
Q ss_conf             4345799986999876798988841957888-----76641169899999989969999999689802344-------4-
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE-----SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-------A-   77 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~-   77 (218)
                      ....-|.++|+.++|||+|+|.+++....-.     ...|.|+-.....+ ..+....+.++||.|.....       . 
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~~~~~~~~~~~~  108 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGDVEKGDNQNDSW  108 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEC-CCCCCCEEEEEECCCCCCCCCCCCHHHHH
T ss_conf             98799998899999799999998099878764787777777658998541-57887469998245434544465045799


Q ss_pred             HHHHHHCCCCEEEEEEEC-CCHHHHHHHHHHHHH
Q ss_conf             246541599699999979-995669999999999
Q 027824           78 ITSAYYRGAVGALLVYDV-TRHATFQNVGRWLRE  110 (218)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~-~~~~s~~~l~~~~~~  110 (218)
                      +....+--++.+||-..- .+...++.+......
T Consensus       109 i~~l~~llSs~~i~N~~~~~~~~~l~~L~~~~~~  142 (277)
T d1f5na2         109 IFALAVLLSSTFVYNSIGTINQQAMDQLYYVTEL  142 (277)
T ss_dssp             HHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTH
T ss_pred             HHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9999999728799932155768999998999999

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.88  E-value=0.00031  Score=39.44  Aligned_cols=27  Identities=15%  Similarity=0.343  Sum_probs=22.8

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             743457999869998767989888419
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .+..++|++.|+|||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             999888999828999889999999998

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.79  E-value=0.00032  Score=39.34  Aligned_cols=41  Identities=12%  Similarity=0.225  Sum_probs=27.1

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999769919997169999989999999999999974433
Q 027824          139 EDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA  182 (218)
Q Consensus       139 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~  182 (218)
                      ....++..+++.+++.+..   .++++.+..+...+.+....+.
T Consensus       146 ~~~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~ll~~~~  186 (192)
T d1lw7a2         146 QLLKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEKVLNEEE  186 (192)
T ss_dssp             HHHHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHCCCCEEEECC---CCHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999977998899589---8999999999999999877484

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.77  E-value=0.00046  Score=38.48  Aligned_cols=26  Identities=35%  Similarity=0.620  Sum_probs=22.7

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             43457999869998767989888419
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .+.++|+++|+|||||||+...|...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             76216999889999879999999999

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.66  E-value=0.00053  Score=38.12  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             57999869998767989888419
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      +||+++|+|||||||+...|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
T ss_conf             98999889999989999999998

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.64  E-value=0.00049  Score=38.30  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=20.8

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             457999869998767989888419
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      ..+|+++|+|||||||+.+.|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             897989899999989999999999

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.58  E-value=0.00068  Score=37.53  Aligned_cols=25  Identities=32%  Similarity=0.519  Sum_probs=21.2

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             3457999869998767989888419
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .-++|+++|+|||||||+...|...
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             9638999899999889999999998

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.55  E-value=0.00075  Score=37.31  Aligned_cols=24  Identities=21%  Similarity=0.544  Sum_probs=20.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             579998699987679898884195
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      +||+++|+||+||||+...|....
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             989998899999799999999998

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.53  E-value=0.00073  Score=37.35  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             579998699987679898884195
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      ++|+++|+|||||||+...|....
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             989998899998799999999987

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.012  Score=30.63  Aligned_cols=26  Identities=31%  Similarity=0.451  Sum_probs=21.5

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             45799986999876798988841957
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .-.+++.|++|+|||+++..+.....
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             78599889999988999999997622

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.49  E-value=0.001  Score=36.58  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=21.2

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             3457999869998767989888419
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .+..|+++|+|||||||+..+|...
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             9948999899999889999999999

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.48  E-value=0.00063  Score=37.71  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=21.1

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             4579998699987679898884195
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      +++|+++|+||+||||+...|....
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             7299998899999899999999987

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0008  Score=37.14  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             7999869998767989888419
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~   36 (218)
                      -|+++|.+|||||||++++...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             8999918999899999999999

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00086  Score=36.97  Aligned_cols=23  Identities=17%  Similarity=0.404  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             57999869998767989888419
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      ++|+++|+|||||||+...|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
T ss_conf             98999879999989999999998

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.0011  Score=36.44  Aligned_cols=24  Identities=29%  Similarity=0.569  Sum_probs=20.8

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             457999869998767989888419
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .++|+++|+|||||||+...|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             569999899999989999999999

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.20  E-value=0.0021  Score=34.81  Aligned_cols=28  Identities=25%  Similarity=0.335  Sum_probs=22.4

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             7434579998699987679898884195
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      .+.+.-|+|.|+||+|||+|...+.+..
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             8999799988979988999999999986

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0017  Score=35.36  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=20.7

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             457999869998767989888419
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      ++.|+++|+|||||||+...+...
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             939999799999989999999998

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.18  E-value=0.0014  Score=35.76  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             7999869998767989888419
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~   36 (218)
                      -|++.|+|||||||+.+++...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             9999899999999999999995

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.17  E-value=0.0028  Score=34.08  Aligned_cols=80  Identities=16%  Similarity=0.201  Sum_probs=40.3

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEE-EEEEEEECCCCHHHHHH-HHHHHCCCCEEE
Q ss_conf             4579998699987679898884195788876641169899999989969-99999968980234442-465415996999
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV-VKAQIWDTAGQERYRAI-TSAYYRGAVGAL   90 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i   90 (218)
                      -.-|++-|+-|+|||||++.+...........+.+.... ......... +++.++=..+.++...+ ...++ ..++++
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~-~~Y~~~~~~i~H~DlYRl~~~~El~~lg~~e~~-~~~~i~  110 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV-EEYNIAGKMIYHFDLYRLADPEELEFMGIRDYF-NTDSIC  110 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE-EEEEETTEEEEEEECTTCSCTTHHHHSTHHHHH-SSSCEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEE-EEECCCCCEEEEEEEECCCCHHHHHHCCCHHHH-CCCCEE
T ss_conf             829999668776588999998764223466678753788-763057852899997515881354547755674-669789


Q ss_pred             EEEE
Q ss_conf             9997
Q 027824           91 LVYD   94 (218)
Q Consensus        91 ~v~d   94 (218)
                      ++=.
T Consensus       111 ~IEW  114 (158)
T d1htwa_         111 LIEW  114 (158)
T ss_dssp             EEES
T ss_pred             EEEC
T ss_conf             9999

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.00045  Score=38.50  Aligned_cols=21  Identities=33%  Similarity=0.703  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998767989888419
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~   36 (218)
                      |+++|++|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             999998999999999999970

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.17  E-value=0.0015  Score=35.68  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             57999869998767989888419
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .-|+++|.||+||||+.++|...
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
T ss_conf             89999899999999999999999

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.0024  Score=34.52  Aligned_cols=27  Identities=22%  Similarity=0.204  Sum_probs=22.7

Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             874345799986999876798988841
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus         9 ~~~~~~~I~i~G~~~~GKssli~~l~~   35 (218)
                      ..+...-|+++|.|||||||+..++..
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             799998999989999989999999997

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.06  E-value=0.0018  Score=35.24  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             7999869998767989888419
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~   36 (218)
                      -|++.|+||+||||+.+.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             8999899999989999999998

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.002  Score=34.93  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .|+++|+.|+|||||++.+.+-..
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             999999999989999999973578

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0028  Score=34.11  Aligned_cols=27  Identities=22%  Similarity=0.455  Sum_probs=21.6

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             434579998699987679898884195
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      +..--|+++|+|||||||+...|....
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             997289998999999899999999985

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.99  E-value=0.0018  Score=35.23  Aligned_cols=23  Identities=43%  Similarity=0.554  Sum_probs=19.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             57999869998767989888419
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      -+|+++|.+||||||+...+...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHH
T ss_conf             94899889999889999999998

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.95  E-value=0.0022  Score=34.70  Aligned_cols=23  Identities=39%  Similarity=0.547  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79998699987679898884195
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      .++++|++|+|||||++.+.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999999985999999986216

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.0022  Score=34.71  Aligned_cols=21  Identities=43%  Similarity=0.722  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998767989888419
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~   36 (218)
                      |+|+|++||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             999899999989999999974

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0025  Score=34.43  Aligned_cols=27  Identities=26%  Similarity=0.378  Sum_probs=21.5

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             345799986999876798988841957
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      ..-+++++|+||+|||+++..+.....
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf             668967988898867799999999998

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.92  E-value=0.0022  Score=34.68  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699987679898884195
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~~   37 (218)
                      |.++|.+|||||||+.++....
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHH
T ss_conf             9998099998999999999999

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.91  E-value=0.0025  Score=34.36  Aligned_cols=25  Identities=16%  Similarity=0.314  Sum_probs=21.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5799986999876798988841957
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .+|++.|+.|+||||+++.++....
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf             8889994035662578999865301

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.85  E-value=0.0029  Score=34.08  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=21.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5799986999876798988841957
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      =.++++|+.|+|||||++.+.+-..
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             9999999999979999999999609

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0024  Score=34.45  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             7999869998767989888419
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .|+|+|++|+||||+...|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             4999899999999999999999

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.80  E-value=0.0026  Score=34.28  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998767989888419
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~   36 (218)
                      |+++|++||||+||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             999899999999999999845

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.003  Score=33.93  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .++++|+.|+|||||++.+.+-..
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999999999849999999861437

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0027  Score=34.24  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .|++.|++|+|||||+..+.....
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999988999719999999999999

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.003  Score=33.95  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998767989888419
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~   36 (218)
                      |+++|++||||+||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             999999999999999999863

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0031  Score=33.89  Aligned_cols=23  Identities=43%  Similarity=0.600  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79998699987679898884195
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999899982999999996587

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.003  Score=33.94  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .++++|+.|+|||||++.+.+-..
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999998999829999999957974

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.74  E-value=0.0028  Score=34.13  Aligned_cols=22  Identities=41%  Similarity=0.634  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             7999869998767989888419
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~   36 (218)
                      +|+++|++|+||||+...+...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
T ss_conf             3999899999889999999998

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.74  E-value=0.0035  Score=33.61  Aligned_cols=27  Identities=30%  Similarity=0.476  Sum_probs=21.9

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             434579998699987679898884195
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      ...-.+++.|+||+||||+++.+.+..
T Consensus        33 ~~~~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          33 EPLEHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             SCCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             888738988979987888999999984

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.71  E-value=0.0031  Score=33.89  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79998699987679898884195
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCCCHHHHHCCCCC
T ss_conf             99998899998216557506887

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0037  Score=33.46  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=21.1

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             45799986999876798988841957
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .-+++++|+||+|||+++..+.....
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             88739983587544799999999998

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.62  E-value=0.0035  Score=33.59  Aligned_cols=21  Identities=24%  Similarity=0.301  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             799986999876798988841
Q 027824           15 KLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~   35 (218)
                      -|++.|.+||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899989999898999999999

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.59  E-value=0.0045  Score=33.01  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=20.1

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             457999869998767989888419
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      -+-|.|.|.|||||||+...|...
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             769998899999999999999999

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.59  E-value=0.0038  Score=33.37  Aligned_cols=21  Identities=48%  Similarity=0.757  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998767989888419
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~   36 (218)
                      |+|+|++||||+||..+|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             999999999999999999974

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.57  E-value=0.004  Score=33.28  Aligned_cols=24  Identities=42%  Similarity=0.493  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -+.++|+.|+|||||++.+.+-..
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999829999999975899

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.54  E-value=0.0035  Score=33.56  Aligned_cols=23  Identities=17%  Similarity=0.420  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             57999869998767989888419
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .-|+++|+|||||||+..+|...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
T ss_conf             28999899999879999999998

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.53  E-value=0.0037  Score=33.42  Aligned_cols=23  Identities=35%  Similarity=0.697  Sum_probs=19.8

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             45799986999876798988841
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~   35 (218)
                      .-||+++||+|||||-|.++|-.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHH
T ss_conf             56479989999889999999998

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.52  E-value=0.0029  Score=34.07  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79998699987679898884195
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      .++++|+.|+|||||++.+.+-.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99998899980999999997127

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.52  E-value=0.0042  Score=33.13  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -++++|+.|+|||||++.+.+-..
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999997999809999999973999

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.52  E-value=0.0041  Score=33.24  Aligned_cols=24  Identities=33%  Similarity=0.627  Sum_probs=20.7

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             457999869998767989888419
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .-.|+++||||+|||.|...+...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHC
T ss_conf             866999899998888999998621

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.004  Score=33.28  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=18.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             57999869998767989888419
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .-|+++|++|+||||+...|...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
T ss_conf             18999899998989999999998

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.44  E-value=0.0067  Score=32.04  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=21.3

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             3457999869998767989888419
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      ...-|++.|+||+|||++++.+.+.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf             9807998896999889999998620

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.42  E-value=0.0046  Score=32.92  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998767989888419
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~   36 (218)
                      |++.|++|+||||+.+.+...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             999889999889999999999

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.36  E-value=0.0048  Score=32.85  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             579998699987679898884195
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      -.+++.|+||+|||++.+.+....
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf             748987999973889999998503

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.33  E-value=0.0052  Score=32.62  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -+.++|+.|+|||||++.+.+-..
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999809999999964878

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0046  Score=32.94  Aligned_cols=23  Identities=39%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79998699987679898884195
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99998999898889999875886

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.29  E-value=0.0055  Score=32.51  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .++++|+.|+|||||++.+++-..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999719999999966205

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.28  E-value=0.0054  Score=32.55  Aligned_cols=21  Identities=14%  Similarity=0.493  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             799986999876798988841
Q 027824           15 KLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~   35 (218)
                      .|+++|.+|+||||+...+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
T ss_conf             889988999988999999999

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.27  E-value=0.007  Score=31.91  Aligned_cols=28  Identities=21%  Similarity=0.217  Sum_probs=22.6

Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8743457999869998767989888419
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus         9 ~~~~~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      +....+-|.+-|++|||||||.+.|...
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             6799889997898878999999999998

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.24  E-value=0.0037  Score=33.46  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -++++|+.|+|||||++.+.+-..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999998999829999999964768

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.17  E-value=0.004  Score=33.29  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=19.0

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             345799986999876798988841
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~   35 (218)
                      ..-+++++|+||||||+++..|..
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHH
T ss_conf             899976879999889999999999

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.16  E-value=0.0065  Score=32.11  Aligned_cols=28  Identities=29%  Similarity=0.272  Sum_probs=20.4

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             7434579998699987679898884195
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      .+...-+.+.|+||+|||++++.+....
T Consensus        43 ~~~~~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          43 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             8853489967899989999999999998

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.13  E-value=0.0063  Score=32.17  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79998699987679898884195
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      =|+|.|.+|+||||+.+.|....
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHC
T ss_conf             99998999999899999999972

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.06  E-value=0.0071  Score=31.90  Aligned_cols=23  Identities=39%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79998699987679898884195
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999899982999999997476

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.04  E-value=0.0093  Score=31.23  Aligned_cols=28  Identities=21%  Similarity=0.252  Sum_probs=22.7

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             4345799986999876798988841957
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      ...-.+++.|+||+|||++++.+.....
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             8888168889899989999999999975

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.011  Score=30.83  Aligned_cols=25  Identities=20%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             4579998699987679898884195
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      .-.+++.|+||+|||+++..+.+..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             7449998799998889999999998

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.02  E-value=0.0077  Score=31.69  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             457999869998767989888419
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .++|++-|+|||||||+...|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             659997899987989999999999

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0086  Score=31.43  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             457999869998767989888419
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      ++-|++-|++|||||||.+.|...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             989999899978799999999999

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0041  Score=33.23  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=19.9

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             457999869998767989888419
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      -.-|.|.|.|||||||+.+.|...
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             969998899999999999999999

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.94  E-value=0.0078  Score=31.68  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -+.++|+.|+|||||++.+.+-..
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999999999859999999967888

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.87  E-value=0.0091  Score=31.28  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=20.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5799986999876798988841957
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -.+++.|++|+|||+++..+.....
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             7699978999748799999999987

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.0063  Score=32.17  Aligned_cols=22  Identities=45%  Similarity=0.693  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             7999869998767989888419
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~   36 (218)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999989998099999999488

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.77  E-value=0.0082  Score=31.54  Aligned_cols=22  Identities=36%  Similarity=0.670  Sum_probs=17.8

Q ss_pred             EE-EEECCCCCCHHHHHHHHHCC
Q ss_conf             79-99869998767989888419
Q 027824           15 KL-VLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~I-~i~G~~~~GKssli~~l~~~   36 (218)
                      || ++.|.+||||||+++.|...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
T ss_conf             19999898998989999999999

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.76  E-value=0.0043  Score=33.10  Aligned_cols=24  Identities=21%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .++++|+.|+|||||++.+.+-..
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999998999809999999975868

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.69  E-value=0.012  Score=30.72  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -+.++|+.|+|||||++.+.+-..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999999999999999999966988

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.65  E-value=0.01  Score=31.05  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             57999869998767989888419
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      -.|++.|+||+|||++++.+.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
T ss_conf             64887668988835999999987

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.65  E-value=0.0089  Score=31.35  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=19.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             57999869998767989888419
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      -.|++.|++|+|||||+.++...
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
T ss_conf             87999869998299999999997

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.64  E-value=0.013  Score=30.39  Aligned_cols=24  Identities=33%  Similarity=0.410  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -+.++|+.|+|||||++.+.+-..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999999999849999999977976

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.016  Score=29.92  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=23.0

Q ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             8874345799986999876798988841
Q 027824            8 EEYDYLFKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus         8 ~~~~~~~~I~i~G~~~~GKssli~~l~~   35 (218)
                      .....++-|.+.|+++|||||+.+.|..
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf             4789988999968999987689999999

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.014  Score=30.27  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             4579998699987679898884195
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      ...|++.|+||+|||++++.+....
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             8646876699888308999999874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.012  Score=30.63  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             4579998699987679898884195
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      .-.+++.|+||+|||++++.+....
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf             8867866899888228999999982

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.26  E-value=0.013  Score=30.46  Aligned_cols=25  Identities=16%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5799986999876798988841957
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -.+++.|++|+||||+++.+.....
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             7499988999870546999999972

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.015  Score=30.12  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79998699987679898884195
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      -|++.|+|||||+|+...+....
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89977999889899999999996

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.015  Score=30.14  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79998699987679898884195
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      .+++.|++|+|||+++..+....
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             59998999998499999999997

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.00  E-value=0.015  Score=30.06  Aligned_cols=24  Identities=21%  Similarity=0.574  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .+++.|++|+|||+++..+.....
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             599988998775589999999851

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.00  E-value=0.015  Score=30.16  Aligned_cols=25  Identities=20%  Similarity=0.297  Sum_probs=21.4

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             4579998699987679898884195
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      ...|++.|+||+|||+|++.+.+..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             8757887899876304778878771

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=93.98  E-value=0.018  Score=29.59  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=20.6

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             345799986999876798988841
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~   35 (218)
                      +++-|.+.|.+||||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             998999989887789999999998

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.97  E-value=0.02  Score=29.39  Aligned_cols=26  Identities=31%  Similarity=0.583  Sum_probs=21.6

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             43457999869998767989888419
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      ...+-|++-|..||||||+++.|...
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             98619998899998889999999987

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.89  E-value=0.01  Score=31.07  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHHC
Q ss_conf             5799986999876798988841
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~   35 (218)
                      -.|++.|+||+|||+|.+++..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
T ss_conf             7089988998529999999987

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.70  E-value=0.032  Score=28.27  Aligned_cols=27  Identities=19%  Similarity=0.176  Sum_probs=21.6

Q ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             874345799986999876798988841
Q 027824            9 EYDYLFKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus         9 ~~~~~~~I~i~G~~~~GKssli~~l~~   35 (218)
                      ....++=|.+-|.+|||||||...+..
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             899988998379987889999999999

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.62  E-value=0.021  Score=29.22  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=21.2

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             34579998699987679898884195
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      ..+-|.+.|.||+|||||.+.|....
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             98699998999999899999999887

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.53  E-value=0.022  Score=29.12  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             57999869998767989888419
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      --+++.|+||+|||++...+.+.
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
T ss_conf             76999899998889999999998

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.53  E-value=0.16  Score=24.43  Aligned_cols=89  Identities=11%  Similarity=0.041  Sum_probs=51.4

Q ss_pred             EEEEEEECCCCHHHHH-HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCC-EEEEEECCCCCCCCCCCH
Q ss_conf             9999996898023444-246541599699999979995669999999999986169-9980-999984788889864488
Q 027824           62 VKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNII-VMLIGNKTDLRHLVAVST  138 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~-~~~p-~iiv~nK~Dl~~~~~~~~  138 (218)
                      +.+.+.|+++.-.... ........+|.++++.+. +..++.........+..... .+.+ .-++.|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHCCCCEEECCCH-HHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCC----C
T ss_conf             88898646775225489999986215733321340-466777899999999864034520013348766627775----1


Q ss_pred             HHHHHHHHHCCCEEEEE
Q ss_conf             99999999769919997
Q 027824          139 EDGKAFAEQESLYFMET  155 (218)
Q Consensus       139 ~~~~~~~~~~~~~~~~~  155 (218)
                      +..+++.+..+.+++.+
T Consensus       191 ~~~~~~~~~~~~~~~~~  207 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIHF  207 (269)
T ss_dssp             HHHHHHHHHHTCCEEEE
T ss_pred             CHHHHHHHHCCCEEEEE
T ss_conf             01135676629727999

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.37  E-value=0.024  Score=28.94  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             345799986999876798988841
Q 027824           12 YLFKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        12 ~~~~I~i~G~~~~GKssli~~l~~   35 (218)
                      ..-+++++|+.|||||-|..+|-.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
T ss_conf             875324418998637899999986

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.36  E-value=0.027  Score=28.67  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             7999869998767989888419
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~   36 (218)
                      -|++-|..||||||++..|...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             8999899878999999999999

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.12  E-value=0.032  Score=28.26  Aligned_cols=29  Identities=21%  Similarity=0.285  Sum_probs=24.3

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             74345799986999876798988841957
Q 027824           10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        10 ~~~~~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      ....++|.+=|..|+||||+++.+.....
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             76616999988877889999999999873

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.96  E-value=0.047  Score=27.35  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=23.3

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             434579998699987679898884195
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      ...++|.+=|..|+||||+++.|....
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~l   30 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASAA   30 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             765899998886678999999999986

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.90  E-value=0.04  Score=27.70  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=21.9

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             4345799986999876798988841
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~   35 (218)
                      +..++|.|=|..|+||||+++.|..
T Consensus         2 p~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           2 PTLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             9742999989867789999999999

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.039  Score=27.77  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998767989888419
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~   36 (218)
                      |++-|..||||||+++.|...
T Consensus         5 IviEG~dGsGKsT~~~~L~~~   25 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVET   25 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             999899888799999999999

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.052  Score=27.08  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=19.7

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             457999869998767989888419
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .+-|.+.|.+||||||+.+.|...
T Consensus         3 k~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf             879997898868899999999987

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.061  Score=26.73  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=19.9

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             457999869998767989888419
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .-.++++|++|+|||.|...+...
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             658999778750069999999863

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=92.23  E-value=0.23  Score=23.56  Aligned_cols=25  Identities=32%  Similarity=0.558  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5799986999876798988841957
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .-|++.|++|+||||+.-.+...-+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             9999980899998999999998599

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=92.01  E-value=0.053  Score=27.07  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=18.9

Q ss_pred             EEEEEE-ECCCCCCHHHHHHHHHCCC
Q ss_conf             457999-8699987679898884195
Q 027824           13 LFKLVL-IGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        13 ~~~I~i-~G~~~~GKssli~~l~~~~   37 (218)
                      .-.+++ .|+||+|||.|...+-+..
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             88638887799850889999999986

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.01  E-value=0.058  Score=26.84  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=19.4

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             45799986999876798988841
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~   35 (218)
                      .+-|.+.|..||||||+.+.|..
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
T ss_conf             68999888887889999999998

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.98  E-value=0.049  Score=27.23  Aligned_cols=25  Identities=36%  Similarity=0.442  Sum_probs=20.7

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             4579998699987679898884195
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      ..-|.+.|..|+|||||...+.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             4089997799788899999999855

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.89  E-value=0.051  Score=27.16  Aligned_cols=24  Identities=25%  Similarity=0.221  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -+++.|+||+|||+|...+..+..
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~~   59 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTCQ   59 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999983899988999999999863

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.048  Score=27.27  Aligned_cols=21  Identities=29%  Similarity=0.398  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998767989888419
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~   36 (218)
                      |++-|..|+||||++..|...
T Consensus         6 I~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             999899888999999999999

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.039  Score=27.78  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=20.3

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             457999869998767989888419
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .-.|++-|+.||||||++..|...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             988999878887799999999999

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.65  E-value=0.028  Score=28.61  Aligned_cols=21  Identities=29%  Similarity=0.542  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             799986999876798988841
Q 027824           15 KLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~   35 (218)
                      -|.+.|++||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999989997809999999999

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.1  Score=25.48  Aligned_cols=25  Identities=12%  Similarity=0.131  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             7999869998767989888419578
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFN   39 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~~   39 (218)
                      -+.+.|+||+|||+|...+..+...
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~~   49 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQL   49 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             9999958999999999999999988

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.61  E-value=0.054  Score=26.99  Aligned_cols=24  Identities=21%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -+++.|+||+|||+|...+..+..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999985898988999999999863

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.30  E-value=0.31  Score=22.79  Aligned_cols=89  Identities=11%  Similarity=0.056  Sum_probs=45.6

Q ss_pred             EEEEEEECCCCHHHHHHHHHH-HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHC-CCCCCE-EEEEECCCCCCCCCCCH
Q ss_conf             999999689802344424654-159969999997999566999999999998616-999809-99984788889864488
Q 027824           62 VKAQIWDTAGQERYRAITSAY-YRGAVGALLVYDVTRHATFQNVGRWLRELREHT-DPNIIV-MLIGNKTDLRHLVAVST  138 (218)
Q Consensus        62 ~~~~i~D~~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~p~-iiv~nK~Dl~~~~~~~~  138 (218)
                      +.+.++|+++........... ...++.++++.. .+..++..+...+..+.... ..+.++ .+|.|+.+....    .
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~----~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRE----D  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH----H
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHCCCEEECCCC-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHCCHHH----H
T ss_conf             8868615588657889999987402440320364-0577888889999877765202443214401000100036----7


Q ss_pred             HHHHHHHHHCCCEEEEE
Q ss_conf             99999999769919997
Q 027824          139 EDGKAFAEQESLYFMET  155 (218)
Q Consensus       139 ~~~~~~~~~~~~~~~~~  155 (218)
                      +...++....+.+++.+
T Consensus       194 ~~~~~~~~~~g~~vl~~  210 (289)
T d2afhe1         194 ELIIALANKLGTQMIHF  210 (289)
T ss_dssp             HHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHCCCEEEEE
T ss_conf             89999999749827999

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=90.85  E-value=0.082  Score=26.00  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=24.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf             57999869998767989888419578887664116989
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFA   51 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~   51 (218)
                      .-|++.|++|+|||++.-.|...-+     ..+..|..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~-----~lvaDD~v   48 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH-----LFVGDDAI   48 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC-----EEEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCC-----CEECCCEE
T ss_conf             9999981899998999999998597-----41658768

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.67  E-value=0.078  Score=26.12  Aligned_cols=25  Identities=36%  Similarity=0.594  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5799986999876798988841957
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      --+++.|+||+|||+|...+..+..
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~~   51 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENAC   51 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             4999991899999999999999998

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.46  E-value=0.1  Score=25.45  Aligned_cols=23  Identities=26%  Similarity=0.327  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79998699987679898884195
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      -|++.|+.|+||||.+..++...
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCHHHHHHHHHH
T ss_conf             48987678777447799986662

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.085  Score=25.91  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             57999869998767989888419
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      --|++=|..||||||+++.|...
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
T ss_conf             19999899888599999999998

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.94  E-value=0.11  Score=25.38  Aligned_cols=25  Identities=16%  Similarity=0.121  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5799986999876798988841957
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      --+++.|+||+|||+|...+.....
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~~   62 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTAQ   62 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             7999988998878899999999997

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=89.89  E-value=0.11  Score=25.37  Aligned_cols=25  Identities=32%  Similarity=0.543  Sum_probs=21.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5799986999876798988841957
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      .-|++.|++|+|||++.-.+...-+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             9999980899999999999998499

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.11  Score=25.40  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79998699987679898884195
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      .+++.|++|+|||+++..+....
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             59888899875899999999984

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.61  E-value=0.1  Score=25.48  Aligned_cols=27  Identities=30%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             434579998699987679898884195
Q 027824           11 DYLFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        11 ~~~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      ...-+++++|.+|+|||+++..++...
T Consensus        48 ~~~~H~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          48 AEPRHLLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             GGGGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             352658999079996899999999999

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.27  E-value=0.12  Score=25.18  Aligned_cols=24  Identities=21%  Similarity=0.212  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      -++|.|+||+|||+|...+..+..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             999991799998999999999998

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.16  E-value=0.11  Score=25.20  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998767989888419
Q 027824           16 LVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~   36 (218)
                      |++-|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             999899888699999999999

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.09  E-value=0.12  Score=25.00  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.3

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             99986999876798988841957
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      +.+.|++|+|||-|++.+.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
T ss_conf             79988899839999999998744

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.85  E-value=0.14  Score=24.76  Aligned_cols=25  Identities=16%  Similarity=0.360  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5799986999876798988841957
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      --+++.|++|+||++++..+.....
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             3798889998759999999998210

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.71  E-value=0.17  Score=24.20  Aligned_cols=22  Identities=18%  Similarity=0.117  Sum_probs=19.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHC
Q ss_conf             5799986999876798988841
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~   35 (218)
                      .-|.+.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
T ss_conf             8999979999889999999998

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=88.53  E-value=0.15  Score=24.57  Aligned_cols=70  Identities=14%  Similarity=0.054  Sum_probs=36.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEE--EECCCCCCC----CC---CCHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             999997999566999999999998616999809999--847888898----64---488999999997699199971699
Q 027824           89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI--GNKTDLRHL----VA---VSTEDGKAFAEQESLYFMETSALD  159 (218)
Q Consensus        89 ~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv--~nK~Dl~~~----~~---~~~~~~~~~~~~~~~~~~~~Sa~~  159 (218)
                      .+++++.......+.+..........  .++.+|+|  .+..+-...    ..   ......++++.+++++++-++-..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~  197 (277)
T d1cr2a_         120 TFHLYDSFAEAETDRLLAKLAYMRSG--LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (277)
T ss_dssp             CEEEECCC-CCCHHHHHHHHHHHHHT--TCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHC--CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             14662143310689999986543213--6762599705421203465443067789999999997650165520310356


Q ss_pred             C
Q ss_conf             9
Q 027824          160 A  160 (218)
Q Consensus       160 ~  160 (218)
                      .
T Consensus       198 r  198 (277)
T d1cr2a_         198 N  198 (277)
T ss_dssp             -
T ss_pred             C
T ss_conf             3

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=88.29  E-value=0.11  Score=25.32  Aligned_cols=23  Identities=30%  Similarity=0.296  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             57999869998767989888419
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~~   36 (218)
                      --+++.|++++|||.|...++.-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
T ss_conf             18999889985689999999998

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=87.40  E-value=0.19  Score=24.00  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             799986999876798988841957
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEF   38 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~   38 (218)
                      |++++|++|+|||+|+..+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             556867999887899999999775

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=87.33  E-value=0.18  Score=24.07  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=18.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHC
Q ss_conf             5799986999876798988841
Q 027824           14 FKLVLIGDSGVGKSNLLSRFTK   35 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~~   35 (218)
                      --+++.|+||+|||+|...+..
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHH
T ss_conf             3999994799999999999999

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.15  E-value=0.26  Score=23.24  Aligned_cols=22  Identities=27%  Similarity=0.662  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             7999869998767989888419
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~   36 (218)
                      .++++|++|+|||.+...+...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHH
T ss_conf             9999788862489999999998

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=87.13  E-value=0.14  Score=24.76  Aligned_cols=15  Identities=20%  Similarity=0.632  Sum_probs=13.0

Q ss_pred             EEEECCCCCCHHHHH
Q ss_conf             999869998767989
Q 027824           16 LVLIGDSGVGKSNLL   30 (218)
Q Consensus        16 I~i~G~~~~GKssli   30 (218)
                      ++|+|.||+|||+.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEEECCCCHHHHH
T ss_conf             899962884389999

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=87.08  E-value=0.15  Score=24.51  Aligned_cols=17  Identities=29%  Similarity=0.720  Sum_probs=13.9

Q ss_pred             EEEEECCCCCCHHHHHH
Q ss_conf             79998699987679898
Q 027824           15 KLVLIGDSGVGKSNLLS   31 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~   31 (218)
                      .++|.|.+|+|||+.+-
T Consensus        26 ~~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             CEEEEECTTSCHHHHHH
T ss_pred             CEEEEECCCCCHHHHHH
T ss_conf             98999529866899999

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.04  E-value=0.2  Score=23.80  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=20.3

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             4579998699987679898884195
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFTKNE   37 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~~~~   37 (218)
                      .-=+.+.|+++.|||+|++.+..-.
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             1799998589887789999999983

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=86.58  E-value=0.24  Score=23.43  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=16.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHH
Q ss_conf             579998699987679898884
Q 027824           14 FKLVLIGDSGVGKSNLLSRFT   34 (218)
Q Consensus        14 ~~I~i~G~~~~GKssli~~l~   34 (218)
                      --.++.|+||+|||+++..+.
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHH
T ss_pred             CEEEEECCCCCCCEEHHHHHH
T ss_conf             859997689887521699999

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=86.52  E-value=0.22  Score=23.68  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             7999869998767989888419
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~   36 (218)
                      -+++.|++|+|||+|+-.+...
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHH
T ss_conf             8999928999899999999999

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.16  E-value=0.27  Score=23.10  Aligned_cols=21  Identities=38%  Similarity=0.710  Sum_probs=17.3

Q ss_pred             EEEEEEECCCCCCHHHHHHHHH
Q ss_conf             4579998699987679898884
Q 027824           13 LFKLVLIGDSGVGKSNLLSRFT   34 (218)
Q Consensus        13 ~~~I~i~G~~~~GKssli~~l~   34 (218)
                      .+ .+++|+-|+|||+++.++.
T Consensus        26 ~l-~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NF-TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SE-EEEECSTTSSHHHHHHHHH
T ss_pred             CE-EEEECCCCCCHHHHHHHHH
T ss_conf             98-9999999998899999999

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.11  E-value=0.29  Score=22.97  Aligned_cols=18  Identities=33%  Similarity=0.730  Sum_probs=16.1

Q ss_pred             EEEECCCCCCHHHHHHHH
Q ss_conf             999869998767989888
Q 027824           16 LVLIGDSGVGKSNLLSRF   33 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l   33 (218)
                      .+++|+=|+|||+++.++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
T ss_conf             999999998489999999

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=82.10  E-value=0.49  Score=21.71  Aligned_cols=83  Identities=12%  Similarity=0.015  Sum_probs=42.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             79998699987679898884195788876641169899999989969999999689802344424654159969999997
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   94 (218)
                      -+.+.|++++|||+|.-.+.......                  +.  .+.++|+.+.-........-+ ..|-+ +++.
T Consensus        56 itei~G~~gsGKTtl~l~~~~~~q~~------------------g~--~~vyidtE~~~~~~~a~~~Gv-d~d~v-~~~~  113 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAAAQRE------------------GK--TCAFIDAEHALDPIYARKLGV-DIDNL-LCSQ  113 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT------------------TC--CEEEEESSCCCCHHHHHHTTC-CGGGC-EEEC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCC------------------CC--EEEEECCCCCCCHHHHHHHCC-CHHHE-EEEC
T ss_conf             89980577747899999999998708------------------98--799986544548999998399-87997-9962


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             999566999999999998616999809999
Q 027824           95 VTRHATFQNVGRWLRELREHTDPNIIVMLI  124 (218)
Q Consensus        95 ~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv  124 (218)
                      .+   +.++...++..+....  +.-+||+
T Consensus       114 ~~---~~E~~~~~i~~l~~~~--~~~liVi  138 (263)
T d1u94a1         114 PD---TGEQALEICDALARSG--AVDVIVV  138 (263)
T ss_dssp             CS---SHHHHHHHHHHHHHHT--CCSEEEE
T ss_pred             CC---CHHHHHHHHHHHHHCC--CCCEEEE
T ss_conf             89---8999999999998549--9989999

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.84  E-value=0.38  Score=22.34  Aligned_cols=22  Identities=41%  Similarity=0.703  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             7999869998767989888419
Q 027824           15 KLVLIGDSGVGKSNLLSRFTKN   36 (218)
Q Consensus        15 ~I~i~G~~~~GKssli~~l~~~   36 (218)
                      |+.++|.+++|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             7776679998989999999998

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.38  E-value=0.48  Score=21.75  Aligned_cols=30  Identities=17%  Similarity=0.206  Sum_probs=22.1

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             999869998767989888419578887664
Q 027824           16 LVLIGDSGVGKSNLLSRFTKNEFNLESKST   45 (218)
Q Consensus        16 I~i~G~~~~GKssli~~l~~~~~~~~~~~t   45 (218)
                      |+++|...+|||.+...+........|..|
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT   31 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAPQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSSEEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCEEEEC
T ss_conf             899789876599999999845898289974