Citrus Sinensis ID: 027832

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MQSLKNSPSPLKRPRLTPQPPPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRCFAIKT
ccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEEEcccEEEEEEccEEEEEEEEccccEEEEEcccccHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccEEEcccEEEEcccHHHHccccHHHHHHcccccccccccc
cccccccccccccccccccccccccccccccccccHHHccccccHHHcccHHEEccccEEEEEEccccEEEEEEccEEEEEEEccccEEEEEEccccccHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEccEEEcccccHHHHHHccHHHHHHccccEEcHEEcc
mqslknspsplkrprltpqppptppnpqtlttnkpskwtplnltqselslpltfptgqtfrwkktgplqytgpigphlislkhlqngdvcyhihtspsepaaKSALLDFLNMGISLgelwegfsasdCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGshlgnvegfefhefpslerlslvsevelrnagfgyrCFAIKT
mqslknspsplkrprltpqppptppnpqtlttnkpSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVsevelrnagfgyrcfaikt
MQSLKNSPSplkrprltpqppptppnpqtlttnkpSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPslerlslvsevelrNAGFGYRCFAIKT
**********************************************ELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTS****AAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRCFAI**
***********************************SKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRCFAIKT
*************PRLTPQPPPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRCFAIKT
**********************************PSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRCFAIKT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQSLKNSPSPLKRPRLTPQPPPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRCFAIKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query218 2.2.26 [Sep-21-2011]
Q9FNY7 365 N-glycosylase/DNA lyase O yes no 0.944 0.564 0.625 5e-71
O15527 345 N-glycosylase/DNA lyase O no no 0.830 0.524 0.351 2e-28
O08760 345 N-glycosylase/DNA lyase O yes no 0.899 0.568 0.328 3e-27
O70249 345 N-glycosylase/DNA lyase O yes no 0.830 0.524 0.335 7e-26
P53397 376 N-glycosylase/DNA lyase O yes no 0.825 0.478 0.338 1e-20
Q9V3I8 343 N-glycosylase/DNA lyase O yes no 0.775 0.492 0.306 2e-13
>sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana GN=OGG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  267 bits (682), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 137/219 (62%), Positives = 158/219 (72%), Gaps = 13/219 (5%)

Query: 11  LKRPRLTPQP------------PPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQ 58
           +KRPR T QP            P TP   Q L      KW PL LT +EL+LPLTFPTGQ
Sbjct: 1   MKRPRPTSQPSISSTVKPPLSPPVTPILKQKLHRTGTPKWFPLKLTHTELTLPLTFPTGQ 60

Query: 59  TFRWKKTGPLQYTGPIGPHLISLKHLQNGD-VCYHIHTSPSEPAAKSALLDFLNMGISLG 117
           TFRWKKTG +QY+G IGPHL+SL+     D V Y +H S S  +A+ ALLDFLN  ISL 
Sbjct: 61  TFRWKKTGAIQYSGTIGPHLVSLRQRPGDDAVSYCVHCSTSPKSAELALLDFLNAEISLA 120

Query: 118 ELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGS 177
           ELW  FS  D RF ELA++L GARVLRQDP+ECL+QFLCSSNNNIARITKMVDF++SLG 
Sbjct: 121 ELWSDFSKKDPRFGELARHLRGARVLRQDPLECLIQFLCSSNNNIARITKMVDFVSSLGL 180

Query: 178 HLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRCFAI 216
           HLG+++GFEFH+FPSL+RLS VSE E R AGFGYR   I
Sbjct: 181 HLGDIDGFEFHQFPSLDRLSRVSEEEFRKAGFGYRAKYI 219
Involved in repair of DNA damaged by oxidation by incising DNA at 8-oxoG residues. Excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine (Fapy) from damaged DNA. Has a beta-lyase activity that nicks DNA 3' to the lesion.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 9EC: 9EC: .EC: 1EC: 8
>sp|O15527|OGG1_HUMAN N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2 Back     alignment and function description
>sp|O08760|OGG1_MOUSE N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2 Back     alignment and function description
>sp|O70249|OGG1_RAT N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1 Back     alignment and function description
>sp|P53397|OGG1_YEAST N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OGG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9V3I8|OGG1_DROME N-glycosylase/DNA lyase OS=Drosophila melanogaster GN=Ogg1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
224084932 367 predicted protein [Populus trichocarpa] 0.825 0.490 0.777 3e-80
112982633 378 8-oxoguanine DNA glycosylase [Populus ni 0.825 0.476 0.772 6e-80
225459615 399 PREDICTED: N-glycosylase/DNA lyase [Viti 0.811 0.443 0.768 3e-77
255558622 412 8-oxoguanine DNA glycosylase, putative [ 0.830 0.439 0.758 4e-76
357463557 420 N-glycosylase/DNA lyase [Medicago trunca 0.844 0.438 0.681 7e-71
356518553 395 PREDICTED: N-glycosylase/DNA lyase-like 0.866 0.478 0.671 5e-70
15219068 365 8-oxoguanine-DNA glycosylase 1 [Arabidop 0.944 0.564 0.625 3e-69
5263323 391 Similar to gb|U96710 8-oxoguanine DNA-gl 0.944 0.526 0.625 3e-69
297845148 366 8-oxoguanine-DNA glycosylase 1 [Arabidop 0.944 0.562 0.613 5e-67
449464184 393 PREDICTED: N-glycosylase/DNA lyase-like 0.830 0.460 0.688 2e-64
>gi|224084932|ref|XP_002307451.1| predicted protein [Populus trichocarpa] gi|222856900|gb|EEE94447.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 140/180 (77%), Positives = 158/180 (87%)

Query: 34  KPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHI 93
           KP+ W P+NLTQSELSLPLTFPTGQTFRWK+TGPLQYTG +G HLISLKH QNGDV Y I
Sbjct: 43  KPTNWAPVNLTQSELSLPLTFPTGQTFRWKQTGPLQYTGSLGRHLISLKHHQNGDVYYQI 102

Query: 94  HTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQ 153
           H SPS+ AAKSALL FLN  ISL E+W GF+A+D RFAELA++  GARVLRQDP+ECL+Q
Sbjct: 103 HHSPSQSAAKSALLSFLNTNISLTEMWHGFAAADSRFAELAQHFKGARVLRQDPLECLIQ 162

Query: 154 FLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRC 213
           FLCSSNNNI+RITKMVDF++SLG HLGNVEGFEFH FPSLERL+LV+E +LR AGFGYR 
Sbjct: 163 FLCSSNNNISRITKMVDFVSSLGDHLGNVEGFEFHAFPSLERLALVTEQQLREAGFGYRA 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|112982633|dbj|BAF03495.1| 8-oxoguanine DNA glycosylase [Populus nigra] Back     alignment and taxonomy information
>gi|225459615|ref|XP_002285873.1| PREDICTED: N-glycosylase/DNA lyase [Vitis vinifera] Back     alignment and taxonomy information
>gi|255558622|ref|XP_002520336.1| 8-oxoguanine DNA glycosylase, putative [Ricinus communis] gi|223540555|gb|EEF42122.1| 8-oxoguanine DNA glycosylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357463557|ref|XP_003602060.1| N-glycosylase/DNA lyase [Medicago truncatula] gi|357520327|ref|XP_003630452.1| N-glycosylase/DNA lyase [Medicago truncatula] gi|355491108|gb|AES72311.1| N-glycosylase/DNA lyase [Medicago truncatula] gi|355524474|gb|AET04928.1| N-glycosylase/DNA lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356518553|ref|XP_003527943.1| PREDICTED: N-glycosylase/DNA lyase-like [Glycine max] Back     alignment and taxonomy information
>gi|15219068|ref|NP_173590.1| 8-oxoguanine-DNA glycosylase 1 [Arabidopsis thaliana] gi|11967657|emb|CAC19363.1| 8-oxoguanine DNA glycosylase [Arabidopsis thaliana] gi|16074117|emb|CAC83625.1| 8-oxoguanine-DNA glycosylase [Arabidopsis thaliana] gi|51971190|dbj|BAD44287.1| 8-oxoguanine DNA glycosylase-like protein [Arabidopsis thaliana] gi|94442429|gb|ABF19002.1| At1g21710 [Arabidopsis thaliana] gi|332192024|gb|AEE30145.1| 8-oxoguanine-DNA glycosylase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5263323|gb|AAD41425.1|AC007727_14 Similar to gb|U96710 8-oxoguanine DNA-glycosylase from Homo sapiens [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297845148|ref|XP_002890455.1| 8-oxoguanine-DNA glycosylase 1 [Arabidopsis lyrata subsp. lyrata] gi|297336297|gb|EFH66714.1| 8-oxoguanine-DNA glycosylase 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449464184|ref|XP_004149809.1| PREDICTED: N-glycosylase/DNA lyase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
TAIR|locus:2036957 365 OGG1 "8-oxoguanine-DNA glycosy 0.807 0.482 0.644 2.5e-58
UNIPROTKB|F1P1Z7303 OGG1 "Uncharacterized protein" 0.798 0.574 0.353 6.6e-26
UNIPROTKB|O15527 345 OGG1 "N-glycosylase/DNA lyase" 0.802 0.507 0.329 2.9e-23
MGI|MGI:1097693 345 Ogg1 "8-oxoguanine DNA-glycosy 0.802 0.507 0.335 1.6e-22
UNIPROTKB|F1SQF9 345 OGG1 "Uncharacterized protein" 0.802 0.507 0.329 2.6e-22
UNIPROTKB|F1PYD9 344 OGG1 "Uncharacterized protein" 0.798 0.505 0.322 4.3e-22
UNIPROTKB|H7C0A1168 OGG1 "8-oxoguanine DNA glycosy 0.674 0.875 0.359 5.5e-22
UNIPROTKB|F1MPV2 347 OGG1 "Uncharacterized protein" 0.802 0.504 0.324 1.5e-21
RGD|621168 345 Ogg1 "8-oxoguanine DNA glycosy 0.802 0.507 0.313 3.9e-21
UNIPROTKB|O70249 345 Ogg1 "N-glycosylase/DNA lyase" 0.802 0.507 0.313 3.9e-21
TAIR|locus:2036957 OGG1 "8-oxoguanine-DNA glycosylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 114/177 (64%), Positives = 133/177 (75%)

Query:    37 KWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGD-VCYHIHT 95
             KW PL LT +EL+LPLTFPTGQTFRWKKTG +QY+G IGPHL+SL+     D V Y +H 
Sbjct:    39 KWFPLKLTHTELTLPLTFPTGQTFRWKKTGAIQYSGTIGPHLVSLRQRPGDDAVSYCVHC 98

Query:    96 SPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFL 155
             S S  +A+ ALLDFLN  ISL ELW  FS  D RF ELA++L GARVLRQDP+ECL+QFL
Sbjct:    99 STSPKSAELALLDFLNAEISLAELWSDFSKKDPRFGELARHLRGARVLRQDPLECLIQFL 158

Query:   156 CSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNAGFGYR 212
             CSSNNNIARITKMVDF++SLG HLG+++GFEFH+FP               AGFGYR
Sbjct:   159 CSSNNNIARITKMVDFVSSLGLHLGDIDGFEFHQFPSLDRLSRVSEEEFRKAGFGYR 215
GO:0003677 "DNA binding" evidence=IEA
GO:0003684 "damaged DNA binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA;IDA
GO:0006284 "base-excision repair" evidence=IEA;ISS
GO:0006289 "nucleotide-excision repair" evidence=IEA
GO:0008534 "oxidized purine nucleobase lesion DNA N-glycosylase activity" evidence=IEA;IDA
GO:0006306 "DNA methylation" evidence=RCA
UNIPROTKB|F1P1Z7 OGG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O15527 OGG1 "N-glycosylase/DNA lyase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1097693 Ogg1 "8-oxoguanine DNA-glycosylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQF9 OGG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYD9 OGG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|H7C0A1 OGG1 "8-oxoguanine DNA glycosylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MPV2 OGG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|621168 Ogg1 "8-oxoguanine DNA glycosylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O70249 Ogg1 "N-glycosylase/DNA lyase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
TIGR00588 310 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) 3e-32
pfam07934113 pfam07934, OGG_N, 8-oxoguanine DNA glycosylase, N- 1e-30
COG0122 285 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o 3e-10
>gnl|CDD|211589 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information 
 Score =  118 bits (297), Expect = 3e-32
 Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 7/183 (3%)

Query: 37  KWTPLNLTQSELSLPLTFPTGQTFRWK-KTGPLQYTGPI---GPHLISLKHLQNGDVCY- 91
           +W  + + +SEL L L   +GQ+FRW+ +  P  ++G +      + +L   +   +C  
Sbjct: 4   RWASIPIPRSELRLDLVLRSGQSFRWRWEESPAHWSGLLVIADQPVWTLTQTEEQLLCTV 63

Query: 92  HIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECL 151
           +    P++   ++ L  +  + +SL +L+  + + D  F  +A+   G R+LRQDP ECL
Sbjct: 64  YRGDKPTQDELETKLEKYFQLDVSLAQLYTHWGSVDKHFQYVAQKFQGVRLLRQDPFECL 123

Query: 152 LQFLCSSNNNIARITKMVDFLASL-GSHLGNVEGFEFHEFPSLERL-SLVSEVELRNAGF 209
           + F+CSSNNNIARIT+MV+ L    G  L  ++G  +H FPSL  L    +E  LR  G 
Sbjct: 124 ISFICSSNNNIARITRMVERLCQAFGPRLITLDGVTYHGFPSLHALTGPEAEAHLRKLGL 183

Query: 210 GYR 212
           GYR
Sbjct: 184 GYR 186

All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily [DNA metabolism, DNA replication, recombination, and repair]. Length = 310
>gnl|CDD|219650 pfam07934, OGG_N, 8-oxoguanine DNA glycosylase, N-terminal domain Back     alignment and domain information
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 218
KOG2875 323 consensus 8-oxoguanine DNA glycosylase [Replicatio 100.0
TIGR00588 310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 100.0
PF07934117 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal do 99.98
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 99.92
COG0122 285 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine 99.87
KOG1918 254 consensus 3-methyladenine DNA glycosidase [Replica 99.27
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 99.11
TIGR01083 191 nth endonuclease III. This equivalog model identif 99.02
PRK10702 211 endonuclease III; Provisional 98.98
cd00056158 ENDO3c endonuclease III; includes endonuclease III 98.95
TIGR01084 275 mutY A/G-specific adenine glycosylase. This equiva 98.64
PRK10880 350 adenine DNA glycosylase; Provisional 98.25
PRK13913 218 3-methyladenine DNA glycosylase; Provisional 98.07
PF06029116 AlkA_N: AlkA N-terminal domain; InterPro: IPR01031 97.84
COG0177 211 Nth Predicted EndoIII-related endonuclease [DNA re 97.69
TIGR03252177 uncharacterized HhH-GPD family protein. This model 97.37
PRK01229208 N-glycosylase/DNA lyase; Provisional 95.73
COG1194 342 MutY A/G-specific DNA glycosylase [DNA replication 94.31
smart00478149 ENDO3c endonuclease III. includes endonuclease III 92.52
COG2231 215 Uncharacterized protein related to Endonuclease II 87.93
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-53  Score=368.72  Aligned_cols=183  Identities=40%  Similarity=0.788  Sum_probs=167.4

Q ss_pred             cCCCCceeccCCCCCcCcCccccCCCccceeEeCCCeeEEeeCCeEEEEEEcCCCcEEEEEeCCCC--hHHHHHHHHhhh
Q 027832           33 NKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPS--EPAAKSALLDFL  110 (218)
Q Consensus        33 ~~~~~w~~l~~~~~~~~L~~tL~sGQ~FrW~~~~~~~~~gvi~~~vv~lrq~~~~~l~~~~~~~~~--~~~~~~~l~~yF  110 (218)
                      .+...|.+|+++.++++|+.||.+||+|||++.+.+.|+||+|+.+|.++|+++..+.|.+.++.+  .++..+.|++||
T Consensus         3 ~t~~~w~~i~~~~sEl~L~~tL~sGQsFRWr~~~~~~ysG~lg~~v~~L~Q~ee~~~~y~~~~s~~~p~~del~~i~~yf   82 (323)
T KOG2875|consen    3 STPALWASIPCSRSELDLELTLPSGQSFRWREQSPAHYSGVLGDQVWTLTQTEEQCTVYRGDKSASRPTPDELEAISKYF   82 (323)
T ss_pred             CccccceeccCCHHHcchhhhccCCceeeeecCCcccccceeccEEEEEEecCCceEEEEeecCCCCCChHHHHHHHHHH
Confidence            345579999999999999999999999999999889999999999999999876546677766522  234455899999


Q ss_pred             ccCCChHHHHHHhhccChhHHHHHHhcCCcccCCCChHHHHHHHHHHhcccHHHHHHHHHHHH-hhCCCcccccCceeec
Q 027832          111 NMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHE  189 (218)
Q Consensus       111 ~Ld~dl~~~~~~~~~~Dp~l~~~~~~~~GlRilrqdpfE~LisfI~sQn~nI~~i~~~i~rL~-~~G~~i~~~~g~~~y~  189 (218)
                      +||++|..+|.+|...|++|.++..  .|+|+|||||||||+||||||||||+||++|+++|| .||.+|+.++|.+||.
T Consensus        83 ~ldv~L~~l~~~W~~~D~~F~~la~--qgvRlLrQdP~E~lfSFiCSSNNNIaRIT~Mve~fc~~fG~~i~~~dg~~~h~  160 (323)
T KOG2875|consen   83 QLDVTLAQLYHHWGSVDDHFQELAQ--QGVRLLRQDPIECLFSFICSSNNNIARITGMVERFCQAFGPRIIQLDGVDYHG  160 (323)
T ss_pred             hheeeHHHHHHHhCcCChHHHHHHH--hhhHHHhcCcHHHHHHHHhcCCCcHHHHHHHHHHHHHhhCcceEeecCccccc
Confidence            9999999999999999999999998  799999999999999999999999999999999999 8999999999999999


Q ss_pred             CCCHHHHh-cCCHHHHHHCCCCccccccc
Q 027832          190 FPSLERLS-LVSEVELRNAGFGYRCFAIK  217 (218)
Q Consensus       190 FPtpe~La-~~~~e~LR~~g~GyRA~yI~  217 (218)
                      |||.++|+ ...|++||++|||||||||.
T Consensus       161 FPsl~~L~g~~~Ea~LR~~gfGYRAkYI~  189 (323)
T KOG2875|consen  161 FPSLQALAGPEVEAELRKLGFGYRAKYIS  189 (323)
T ss_pred             CccHHHhcCcHhHHHHHHcCcchhHHHHH
Confidence            99999999 46799999999999999996

>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>PF07934 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal domain; InterPro: IPR012904 The presence of 8-oxoguanine residues in DNA can give rise to G-C to T-A transversion mutations Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair] Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>PF06029 AlkA_N: AlkA N-terminal domain; InterPro: IPR010316 This domain is found at the N terminus of bacterial AlkA 3 Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
2nol_A 325 Structure Of Catalytically Inactive Human 8-Oxoguan 4e-25
2noh_A 325 Structure Of Catalytically Inactive Q315a Human 8- 4e-25
1hu0_A 324 Crystal Structure Of An Hogg1-Dna Borohydride Trapp 4e-25
2noz_A 325 Structure Of Q315f Human 8-Oxoguanine Glycosylase D 4e-25
1fn7_A 317 Coupling Of Damage Recognition And Catalysis By A H 4e-25
1ebm_A 317 Crystal Structure Of The Human 8-Oxoguanine Glycosy 4e-25
1n3c_A 317 Structural And Biochemical Exploration Of A Critica 4e-25
1n3a_A 317 Structural And Biochemical Exploration Of A Critica 4e-25
1n39_A 317 Structural And Biochemical Exploration Of A Critica 4e-25
2xhi_A 360 Separation-Of-Function Mutants Unravel The Dual Rea 5e-25
1ko9_A 345 Native Structure Of The Human 8-Oxoguanine Dna Glyc 5e-25
3ih7_A 316 Crystal Structure Of Catalytically Active Human 8-O 5e-25
2noe_A 325 Structure Of Catalytically Inactive G42a Human 8-Ox 2e-24
2nob_A 325 Structure Of Catalytically Inactive H270a Human 8- 3e-24
3ktu_A 317 Structure Of Human 8-Oxoguanine Glycosylase 1 Bound 4e-24
1yqk_A 319 Human 8-Oxoguanine Glycosylase Crosslinked With Gua 4e-24
1yql_A 319 Catalytically Inactive Hogg1 Crosslinked With 7-Dea 4e-24
2i5w_A 315 Structure Of Hogg1 Crosslinked To Dna Sampling A No 4e-24
2nof_A 325 Structure Of Q315f Human 8-oxoguanine Glycosylase P 4e-24
2noi_A 325 Structure Of G42a Human 8-Oxoguanine Glycosylase Cr 1e-23
3f0z_A 292 Crystal Structure Of Clostridium Acetobutylicum 8-O 9e-10
3i0x_A 291 Crystal Structure Of Clostridium Acetobutylicum 8-O 1e-09
3f10_A 292 Crystal Structure Of Clostridium Acetobutylicum 8-O 1e-09
3i0w_A 290 Crystal Structure Of Clostridium Acetobutylicum 8-O 1e-09
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine Glycosylase Distal Crosslink To Oxog Dna Length = 325 Back     alignment and structure 
Iteration: 1

 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38  WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
           W  +   +SEL L L  P+GQ+FRW++  P  ++G +   + +L   +    C       
Sbjct: 21  WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98  SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
           S+     P    A+  +  + ++L +L+  + + D  F E+A+   G R+LRQDP+ECL 
Sbjct: 81  SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
            F+CSSNNNIARIT MV+ L  + G  L  ++   +H FP
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 180
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8- Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped Intermediate Complex Length = 324 Back     alignment and structure
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal Crosslink To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human Base-Excision Dna Repair Protein Length = 317 Back     alignment and structure
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase (Hogg1) Bound To A Substrate Oligonucleotide Length = 317 Back     alignment and structure
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-oxoguanine Glycosylase Length = 317 Back     alignment and structure
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-Oxoguanine Glycosylase Length = 317 Back     alignment and structure
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino Acid In Human 8-Oxoguanine Glycosylase Length = 317 Back     alignment and structure
>pdb|2XHI|A Chain A, Separation-Of-Function Mutants Unravel The Dual Reaction Mode Of Human 8-Oxoguanine Dna Glycosylase Length = 360 Back     alignment and structure
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase Hogg1 Length = 345 Back     alignment and structure
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human 8-Oxoguanine Glycosylase Distally Crosslinked To Guanine-Containing Dna Length = 316 Back     alignment and structure
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human 8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2NOB|A Chain A, Structure Of Catalytically Inactive H270a Human 8- Oxoguanine Glycosylase Crosslinked To 8-Oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To Fluorninated Oxog-Containing Dna Length = 317 Back     alignment and structure
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine Containing Dna Length = 319 Back     alignment and structure
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8- Azaguanine Containing Dna Length = 319 Back     alignment and structure
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G Adjacent To An Oxog Length = 315 Back     alignment and structure
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal Crosslink To 8-oxoguanine Dna Length = 325 Back     alignment and structure
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase Crosslinked To Undamaged G-Containing Dna Length = 325 Back     alignment and structure
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form Length = 292 Back     alignment and structure
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING ADENINE Opposite To 8-Oxog Length = 291 Back     alignment and structure
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine Dna Glycosylase In Complex With 8-Oxoguanosine Length = 292 Back     alignment and structure
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING CYTOSINE Opposite To 8-Oxog Length = 290 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
2xhi_A 360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 5e-47
3i0w_A 290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 1e-45
2jhn_A 295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
 Score =  157 bits (398), Expect = 5e-47
 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 6   NSPSPLKRPRLTPQPPPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKT 65
           +S  P   P     P            + P+ W  +   +SEL L L  P+GQ+FRW++ 
Sbjct: 9   HSQDPNSMPARALLPRRMGHRT---LASTPALWASIPCPRSELRLDLVLPSGQSFRWREQ 65

Query: 66  GPLQYTGPIGPHLISLKHLQNGDVCYHIHT-----SPSEPAAKSALLDFLNMGISLGELW 120
            P  ++G +   + +L   +    C          S   P    A+  +  + ++L +L+
Sbjct: 66  SPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLY 125

Query: 121 EGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLAS-LGSHL 179
             + + D  F E+A+   G R+LRQDP+ECL  F+CSSNNNIARIT MV+ L    G  L
Sbjct: 126 HHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRL 185

Query: 180 GNVEGFEFHEFPSLERLSLVS-EVELRNAGFGYRCFAIKT 218
             ++   +H FPSL+ L+    E  LR  G GYR   +  
Sbjct: 186 IQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSA 225
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Length = 295 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 218
d2noha2124 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Hum 2e-32
d2noha1 190 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum 1e-10
d1mpga1183 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosyla 3e-06
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: DNA repair glycosylase, N-terminal domain
domain: 8-oxoguanine glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 2e-32
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 35  PSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIH 94
           P+ W  +   +SEL L L  P+GQ+FRW++  P  ++G +   + +L       +   ++
Sbjct: 9   PALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQ-TEEQLHCTVY 67

Query: 95  ------TSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQ 145
                  S   P    A+  +  + ++L +L+  + + D  F E+A+   G R+LRQ
Sbjct: 68  RGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 124
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Length = 183 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
d2noha2124 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 99.94
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 99.77
d2noha1 190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 99.75
d1pu6a_ 217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 98.76
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 98.24
d2abka_ 211 Endonuclease III {Escherichia coli [TaxId: 562]} 97.61
d1keaa_ 217 Thymine-DNA glycosylase {Archaeon Methanobacterium 97.5
d1kg2a_ 224 Catalytic domain of MutY {Escherichia coli [TaxId: 97.35
d1rrqa1 221 Catalytic domain of MutY {Bacillus stearothermophi 97.33
d1orna_ 214 Endonuclease III {Escherichia coli [TaxId: 562]} 97.25
d1mpga299 3-Methyladenine DNA glycosylase II (gene alkA or a 91.69
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: DNA repair glycosylase, N-terminal domain
domain: 8-oxoguanine glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.5e-27  Score=183.36  Aligned_cols=111  Identities=26%  Similarity=0.627  Sum_probs=99.5

Q ss_pred             CCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCEEEEEEECCCCCEEEEEECC------CCHHHHHHHHH
Q ss_conf             999833054799876867102589841206809990698259959999974899489998089------99478999998
Q 027832           34 KPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTS------PSEPAAKSALL  107 (218)
Q Consensus        34 ~~~~w~~l~~~~~~l~L~~tL~sGQ~FrW~~~~~~~y~gv~~~~vi~lrq~~~~~l~~~~~~~------~~~~~~~~~l~  107 (218)
                      .+..|++|++++++|||+.||.|||||||++++++.|.||+++++|.|+|.+ +.+.|.++..      .+.++..+.++
T Consensus         8 ~p~~W~~l~~~~~~l~L~~tL~~GQsFrW~~~~~~~~~gvi~~~vv~L~Q~~-~~i~y~~~~~~~~~~~~~~~~~~~~l~   86 (124)
T d2noha2           8 TPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTE-EQLHCTVYRGDKSQASRPTPDELEAVR   86 (124)
T ss_dssp             CGGGCEEEECCTTTCCHHHHTTSSSCSCCEEEETTEEEEEETTEEEEEEECS-SEEEEEEEC---CCCCCCCHHHHHHHH
T ss_pred             CCCCCEECCCCHHHCCHHHHCCCCCEEEEEECCCCEEEEEECCEEEEEEECC-CCEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             8976667258745406879667776366178699939999899999999859-927999962666666776154899999


Q ss_pred             HHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             65405899688997760069238999986099414799
Q 027832          108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQ  145 (218)
Q Consensus       108 ~yf~Ld~dl~~~~~~~~~~D~~l~~~~~~~~GlRilrq  145 (218)
                      +||+||+||+++++.|.+.|+.|+.+++.+.|+|||||
T Consensus        87 ~Yf~LD~dl~~l~~~w~~~D~~~~~~~~~~~GiRILRQ  124 (124)
T d2noha2          87 KYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ  124 (124)
T ss_dssp             HHTTTTSCHHHHHHHHHHHCHHHHHHHHHCTTCCCCCC
T ss_pred             HHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEECC
T ss_conf             99807888999998751408899999871996177277
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mpga2 d.129.1.2 (A:1-99) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure