Citrus Sinensis ID: 027894

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEccccccHHHHHHHHHccccccccccccEEEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEccccEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHHHHHcHHccccccccccccccEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
maayradedydYLYKVVLIGdsgvgksnllsrftrnefsleskstigvefatrSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRkaldiggdpaalpkgqtinvggkddvsavkkvgccna
Flexible Loop (DISEMBL)
maayradedydYLYKVVLIGDSGVGKSNLLSrftrnefsleskstigvefatrsirvedkivkaqiwdtagqERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKelrghtdsnIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAAlpkgqtinvggkddvsavkkvgccna
Low Complexity Region (SEG)
MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA
Disordered region (IsUnstruct)
*******EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALPKGQTINVG****************
Disordered Region (DISOPRED)
******D****YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY************************************VGCCN*
Disordered Region (DISEMBL)
MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA
Disordered Region (DISPRO)
******DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q9FJH0	217	Ras-related protein RABA1	yes	no	0.995	0.995	0.935	1e-116
Q9LK99	217	Ras-related protein RABA1	no	no	1.0	1.0	0.889	1e-111
Q40521	217	Ras-related protein Rab11	N/A	no	0.990	0.990	0.888	1e-110
Q9S810	218	Ras-related protein RABA1	no	no	1.0	0.995	0.848	1e-106
Q1PEX3	218	Ras-related protein RABA1	no	no	0.990	0.986	0.842	1e-104
O49513	217	Ras-related protein RABA1	no	no	1.0	1.0	0.806	1e-104
Q9SN35	214	Ras-related protein RABA1	no	no	0.976	0.990	0.801	9e-99
Q9FK68	216	Ras-related protein RABA1	no	no	0.986	0.990	0.778	5e-97
P40393	217	Ras-related protein RIC2	no	no	0.986	0.986	0.788	9e-97
P28185	216	Ras-related protein RABA1	no	no	0.986	0.990	0.760	1e-95

>sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1

 Score =  416 bits (1069), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/216 (93%), Positives = 209/216 (96%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MAAYRAD++YDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI V+DK
Sbjct: 1   MAAYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTD+NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IM VGNKADLRHL AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL+QIY VVSR
Sbjct: 121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCN 216
           KALDIG DPAALPKGQTINVG KDDVSAVKKVGCC+
Sbjct: 181 KALDIGDDPAALPKGQTINVGSKDDVSAVKKVGCCS 216

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK99|RAA1G_ARATH Ras-related protein RABA1g OS=Arabidopsis thaliana GN=RABA1G PE=2 SV=1

 Score =  400 bits (1027), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/217 (88%), Positives = 206/217 (94%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MAAYRAD+DYD+LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI V++K
Sbjct: 1   MAAYRADDDYDFLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDEK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HT++NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IMLVGNKADLRHL AVSTEDAKAFAERENTFFMETSALE++NVENAFTEVL+QIY V S+
Sbjct: 121 IMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRVASK 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
           KALDIG D   LPKGQ+INVG KDDVS VKKVGCC++
Sbjct: 181 KALDIGDDHTTLPKGQSINVGSKDDVSEVKKVGCCSS 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1

 Score =  396 bits (1018), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/216 (88%), Positives = 207/216 (95%), Gaps = 1/216 (0%)

Query: 2   AAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI 61
             YRA++DYDYL+K+VLIGDSGVGKSNLLSRF+RNEF+LESKSTIGVEFATRSIRV+DKI
Sbjct: 3   GGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKI 62

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVI 121
           VKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRHVTFENVERWLKELR HTD NIVI
Sbjct: 63  VKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVI 122

Query: 122 MLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           MLVGNKADLRHL AVSTEDAKAFAERENTFFMETSALES+NVENAFTEVLT+IY VV RK
Sbjct: 123 MLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRK 182

Query: 182 ALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
           AL++G DPAALPKGQTINV GKDDVSAVKKVGCC++
Sbjct: 183 ALEVGDDPAALPKGQTINV-GKDDVSAVKKVGCCSS 217

Nicotiana tabacum (taxid: 4097)

>sp|Q9S810|RAA1I_ARATH Ras-related protein RABA1i OS=Arabidopsis thaliana GN=RABA1I PE=2 SV=1

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/218 (84%), Positives = 205/218 (94%), Gaps = 1/218 (0%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           M AYRA++DYDYL+KVVL GDSGVGKSNLLSRFTRN+FS +S++TIGVEFATRSI+ +DK
Sbjct: 1   MGAYRAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTD+NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IMLVGNKADLRHL A+STE+AKAFAERENTFFMETSALE++NV+NAFTEVLTQIY VVS+
Sbjct: 121 IMLVGNKADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSK 180

Query: 181 KALDIGGDP-AALPKGQTINVGGKDDVSAVKKVGCCNA 217
           KAL+ G DP  ALPKGQ INVGG+DD+SAVKK GCC+A
Sbjct: 181 KALEAGDDPTTALPKGQMINVGGRDDISAVKKPGCCSA 218

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PEX3|RAA1H_ARATH Ras-related protein RABA1h OS=Arabidopsis thaliana GN=RABA1H PE=2 SV=1

 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/216 (84%), Positives = 198/216 (91%), Gaps = 1/216 (0%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           M  Y+A++DYDYL+KVVL GDSGVGKSNLLSRFTRN+FS +S+STIGVEFATRSI+V+DK
Sbjct: 1   MGTYKAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRSTIGVEFATRSIQVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTD+N V
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANTV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IMLVGNKADL HL A+STE+ K FAERENTFFMETSALE++NVENAFTEVLTQIY VVS+
Sbjct: 121 IMLVGNKADLNHLRAISTEEVKDFAERENTFFMETSALEAINVENAFTEVLTQIYRVVSK 180

Query: 181 KALDIGGDP-AALPKGQTINVGGKDDVSAVKKVGCC 215
           KALD G DP  ALPKGQ INVG +DDVSAVKK GCC
Sbjct: 181 KALDAGDDPTTALPKGQMINVGSRDDVSAVKKSGCC 216

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|O49513|RAA1E_ARATH Ras-related protein RABA1e OS=Arabidopsis thaliana GN=RABA1E PE=2 SV=1

 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/217 (80%), Positives = 200/217 (92%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           M AYRAD+DYDYL+K+VLIGDSGVGKSNLLSRFTRNEFS+ESKSTIGVEFATRS+ V++K
Sbjct: 1   MGAYRADDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           I+KAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+TRH+TFENVERWLKELR HTD+N+V
Sbjct: 61  IIKAQLWDTAGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IMLVGNKADLRHL AV TE+A++F+EREN FFMETSAL++ NVE AFT VLTQIY V+SR
Sbjct: 121 IMLVGNKADLRHLRAVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYRVMSR 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
           KALD  GDP +LPKGQTI++G KDDV+AVK  GCC+ 
Sbjct: 181 KALDGTGDPMSLPKGQTIDIGNKDDVTAVKSSGCCSG 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN35|RAA1D_ARATH Ras-related protein RABA1d OS=Arabidopsis thaliana GN=RABA1D PE=2 SV=1

 Score =  359 bits (921), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 174/217 (80%), Positives = 194/217 (89%), Gaps = 5/217 (2%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MA YRAD+DYDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS+ V +K
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVERWL+ELR HTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           +MLVGNK+DLRHL AV TEDAK+FAE E+ +FMETSALES NVENAF+EVLTQIYHVVS+
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query: 181 KALDIGGDPAALP-KGQTINVGGKDDVSAVKKVGCCN 216
           KA++ G D   +P KG+ I+V    DVSAVKK GCC+
Sbjct: 181 KAMEAGEDSGNVPSKGEKIDV----DVSAVKKTGCCS 213

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK68|RAA1C_ARATH Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1

 Score =  353 bits (906), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 169/217 (77%), Positives = 194/217 (89%), Gaps = 3/217 (1%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MA YRAD++YDYL+KVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS+ V+DK
Sbjct: 1   MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVE WLKELR HTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           +MLVGNK+DLRHL AV TEDAK+FAE+E+ +FMETSALE+ NVENAF EVLTQI+H+VS+
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query: 181 KALDIGGDPAALP-KGQTINVGGKDDVSAVKKVGCCN 216
           KA++   + A +P KG  I++G   DVSAVKK GCC+
Sbjct: 181 KAMEAASESANVPSKGDKIDIG--KDVSAVKKGGCCS 215

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P40393|RIC2_ORYSJ Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2

 Score =  352 bits (904), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 171/217 (78%), Positives = 194/217 (89%), Gaps = 3/217 (1%)

Query: 2   AAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI 61
           A YRA++DYDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS++V+ K+
Sbjct: 3   AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKV 62

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVI 121
           VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVERWLKELR HTD NIV+
Sbjct: 63  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVV 122

Query: 122 MLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           MLVGNK+DLRHL AV T++ KAFAERE+ +FMETSALES NVENAF EVLTQIY +VS++
Sbjct: 123 MLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKR 182

Query: 182 ALDIGGDPAALP-KGQTINVGGKDDVSAVKKVGCCNA 217
           +++ G D  + P KG+ IN+  KDDVSAVKK GCC+ 
Sbjct: 183 SVEAGDDAGSGPGKGEKINI--KDDVSAVKKGGCCSG 217

Possesses GTPase activity.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P28185|RAA1A_ARATH Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=1 SV=1

 Score =  348 bits (894), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 165/217 (76%), Positives = 196/217 (90%), Gaps = 3/217 (1%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MA YRADE+YDYL+K+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT++ +VE K
Sbjct: 1   MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           +VKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRH TFEN  RWL+ELRGHTD NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           +ML+GNK DLRHL AV TE+AKAFAERE+ +FMETSAL++ NVENAFTEVLTQI+ +VS+
Sbjct: 121 VMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSK 180

Query: 181 KALDIGGDPAALP-KGQTINVGGKDDVSAVKKVGCCN 216
           +++D GG+ A LP KG+TINV  K+D S +K++GCC+
Sbjct: 181 RSVDGGGESADLPGKGETINV--KEDGSVLKRMGCCS 215

Involved in auxin-mediated response. May be involved in vesicle trafficking of components involved in polar auxin transport. Binds GTP and GDP and possesses intrinsic GTPase activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
225443554	217	PREDICTED: ras-related protein RABA1f [V	1.0	1.0	0.944	1e-116
297793649	217	hypothetical protein ARALYDRAFT_919325 [	0.995	0.995	0.939	1e-115
147788245	217	hypothetical protein VITISV_014527 [Viti	1.0	1.0	0.930	1e-114
15239462	217	RAB GTPase homolog A1F [Arabidopsis thal	0.995	0.995	0.935	1e-114
255554684	215	protein with unknown function [Ricinus c	0.990	1.0	0.935	1e-113
356548648	217	PREDICTED: ras-related protein RABA1f-li	1.0	1.0	0.912	1e-113
449456603	217	PREDICTED: ras-related protein RABA1f-li	1.0	1.0	0.921	1e-113
359493623	715	PREDICTED: uncharacterized protein LOC10	1.0	0.303	0.930	1e-113
255568357	216	protein with unknown function [Ricinus c	0.995	1.0	0.926	1e-113
224061286	215	predicted protein [Populus trichocarpa]	0.986	0.995	0.925	1e-112

>gi|225443554|ref|XP_002277579.1| PREDICTED: ras-related protein RABA1f [Vitis vinifera]

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/217 (94%), Positives = 211/217 (97%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MA+YRAD+DYDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV+DK
Sbjct: 1   MASYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTDSNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IMLVGNKADLRHL AVSTEDAKAFAEREN FFMETSALESMNVENAFTEVLTQIY VVSR
Sbjct: 121 IMLVGNKADLRHLRAVSTEDAKAFAERENNFFMETSALESMNVENAFTEVLTQIYRVVSR 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
           KALDIG DPAALPKGQTINVG KDDVSAVKKVGCC+A
Sbjct: 181 KALDIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSA 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793649|ref|XP_002864709.1| hypothetical protein ARALYDRAFT_919325 [Arabidopsis lyrata subsp. lyrata] gi|297310544|gb|EFH40968.1| hypothetical protein ARALYDRAFT_919325 [Arabidopsis lyrata subsp. lyrata]

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/216 (93%), Positives = 209/216 (96%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MAAYRAD+DYDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI V+DK
Sbjct: 1   MAAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN+ERWLKELR HTDSNIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENLERWLKELRDHTDSNIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IM VGNKADLRHL AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL+QIY VVSR
Sbjct: 121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCN 216
           KALDIG DPAALPKGQTINVG KDDVSAVKKVGCC+
Sbjct: 181 KALDIGDDPAALPKGQTINVGSKDDVSAVKKVGCCS 216

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788245|emb|CAN75965.1| hypothetical protein VITISV_014527 [Vitis vinifera]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/217 (93%), Positives = 209/217 (96%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MAAYRAD+DYDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV+DK
Sbjct: 1   MAAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTDS+IV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSHIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IMLVGNK DLRHL AVS +DAKAFAERENTFFMETSALESMNVENAFTEVLTQIY VVSR
Sbjct: 121 IMLVGNKGDLRHLXAVSIDDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYQVVSR 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
           KALDIG DPAALPKGQTINVG KDDVSAVKK GCC++
Sbjct: 181 KALDIGDDPAALPKGQTINVGTKDDVSAVKKAGCCSS 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239462|ref|NP_200894.1| RAB GTPase homolog A1F [Arabidopsis thaliana] gi|75171043|sp|Q9FJH0.1|RAA1F_ARATH RecName: Full=Ras-related protein RABA1f; Short=AtRABA1f gi|10176913|dbj|BAB10106.1| GTP-binding protein, ras-like [Arabidopsis thaliana] gi|26452359|dbj|BAC43265.1| putative GTP-binding protein [Arabidopsis thaliana] gi|28950757|gb|AAO63302.1| At5g60860 [Arabidopsis thaliana] gi|332010004|gb|AED97387.1| RAB GTPase homolog A1F [Arabidopsis thaliana]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/216 (93%), Positives = 209/216 (96%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MAAYRAD++YDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI V+DK
Sbjct: 1   MAAYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTD+NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IM VGNKADLRHL AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL+QIY VVSR
Sbjct: 121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCN 216
           KALDIG DPAALPKGQTINVG KDDVSAVKKVGCC+
Sbjct: 181 KALDIGDDPAALPKGQTINVGSKDDVSAVKKVGCCS 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554684|ref|XP_002518380.1| protein with unknown function [Ricinus communis] gi|223542475|gb|EEF44016.1| protein with unknown function [Ricinus communis]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/217 (93%), Positives = 211/217 (97%), Gaps = 2/217 (0%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MAAYRA++DYDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV+DK
Sbjct: 1   MAAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD+NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDANIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IMLVGNKADLRHL AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY VVSR
Sbjct: 121 IMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
           KAL++G DP ALPKGQTINV  KDDVSAVKKVGCC+A
Sbjct: 181 KALEVGDDPGALPKGQTINV--KDDVSAVKKVGCCSA 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548648|ref|XP_003542712.1| PREDICTED: ras-related protein RABA1f-like [Glycine max]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/217 (91%), Positives = 210/217 (96%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           M AYRAD+DYDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV+DK
Sbjct: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTD+NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           +MLVGNKADLRHL AVSTEDA+ FAERENTFFMETSALES+NVENAFTEVLTQIYHVVS+
Sbjct: 121 VMLVGNKADLRHLRAVSTEDARTFAERENTFFMETSALESLNVENAFTEVLTQIYHVVSK 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
           KAL+IG DPAALPKGQTINVG +DDVSAVKK GCC+A
Sbjct: 181 KALEIGDDPAALPKGQTINVGSRDDVSAVKKSGCCSA 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456603|ref|XP_004146038.1| PREDICTED: ras-related protein RABA1f-like [Cucumis sativus] gi|449510339|ref|XP_004163637.1| PREDICTED: ras-related protein RABA1f-like [Cucumis sativus] gi|307135941|gb|ADN33802.1| GTP-binding protein [Cucumis melo subsp. melo]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/217 (92%), Positives = 210/217 (96%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MAAYR D+DYDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV+DK
Sbjct: 1   MAAYRTDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTDSNIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IMLVGNKADLRHL AVSTEDA+AFAE+ENTFFMETSALES+NVENAFTEVLTQIY VV R
Sbjct: 121 IMLVGNKADLRHLRAVSTEDAQAFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVCR 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
           KAL+IG DPAALPKGQTINVG KDDVSA+KKVGCC++
Sbjct: 181 KALEIGEDPAALPKGQTINVGNKDDVSAMKKVGCCSS 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493623|ref|XP_002282900.2| PREDICTED: uncharacterized protein LOC100265827 [Vitis vinifera]

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/217 (93%), Positives = 209/217 (96%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MAAYRAD+DYDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV+DK
Sbjct: 499 MAAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDK 558

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTDS+IV
Sbjct: 559 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSHIV 618

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IMLVGNK DLRHL AVS +DAKAFAERENTFFMETSALESMNVENAFTEVLTQIY VVSR
Sbjct: 619 IMLVGNKGDLRHLRAVSIDDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYQVVSR 678

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
           KALDIG DPAALPKGQTINVG KDDVSAVKK GCC++
Sbjct: 679 KALDIGDDPAALPKGQTINVGTKDDVSAVKKAGCCSS 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568357|ref|XP_002525153.1| protein with unknown function [Ricinus communis] gi|223535612|gb|EEF37280.1| protein with unknown function [Ricinus communis]

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/217 (92%), Positives = 210/217 (96%), Gaps = 1/217 (0%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           M AYRAD+DYDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI V+DK
Sbjct: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTDSNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IMLVGNKADLRHL AV+TEDAKAFAERE+TFFMETSALES+NVENAFTEVLTQIY VVSR
Sbjct: 121 IMLVGNKADLRHLRAVTTEDAKAFAERESTFFMETSALESLNVENAFTEVLTQIYRVVSR 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
           KALD+G DPAALPKGQTINV GKDDVSAVKKVGCC+A
Sbjct: 181 KALDVGDDPAALPKGQTINV-GKDDVSAVKKVGCCSA 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061286|ref|XP_002300408.1| predicted protein [Populus trichocarpa] gi|118482455|gb|ABK93150.1| unknown [Populus trichocarpa] gi|222847666|gb|EEE85213.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/216 (92%), Positives = 210/216 (97%), Gaps = 2/216 (0%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           M+AYRADEDYDYL+K+VLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSIRV+DK
Sbjct: 1   MSAYRADEDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTD+NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IM VGNKADLRHL AVSTEDAKAFAERENT+FMETSALES+NVENAFTEVLTQIYHVVSR
Sbjct: 121 IMFVGNKADLRHLRAVSTEDAKAFAERENTYFMETSALESLNVENAFTEVLTQIYHVVSR 180

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCN 216
           KALDIG DPAALPKG+TINV  KDDVSAVKKVGCC+
Sbjct: 181 KALDIGDDPAALPKGETINV--KDDVSAVKKVGCCS 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2159285	217	RABA1f "RAB GTPase homolog A1F	0.995	0.995	0.935	1.4e-103
TAIR|locus:2086290	217	RABA1g "RAB GTPase homolog A1G	1.0	1.0	0.889	1.5e-99
TAIR|locus:2018698	218	RABA1i "RAB GTPase homolog A1I	1.0	0.995	0.848	3.7e-96
TAIR|locus:2057624	218	ArRABA1h "RAB GTPase homolog A	0.990	0.986	0.842	7.8e-94
TAIR|locus:2124593	217	RABA1e "RAB GTPase homolog A1E	0.995	0.995	0.810	1.6e-93
TAIR|locus:2124092	214	RABA1d "RAB GTPase homolog A1D	0.976	0.990	0.801	5.9e-89
TAIR|locus:2171943	216	RABA1c "RAB GTPase homolog A1C	0.986	0.990	0.778	1.1e-87
TAIR|locus:2202280	216	ARA-2 [Arabidopsis thaliana (t	0.986	0.990	0.760	7.7e-87
TAIR|locus:2015576	216	RABA1b "RAB GTPase homolog A1B	0.986	0.990	0.741	1.2e-83
TAIR|locus:2024276	217	RAB11c "RAB GTPase 11C" [Arabi	0.981	0.981	0.672	1.4e-73

TAIR|locus:2159285 RABA1f "RAB GTPase homolog A1F" [Arabidopsis thaliana (taxid:3702)]

 Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
 Identities = 202/216 (93%), Positives = 209/216 (96%)

Query:     1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
             MAAYRAD++YDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI V+DK
Sbjct:     1 MAAYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
             IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTD+NIV
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query:   121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
             IM VGNKADLRHL AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL+QIY VVSR
Sbjct:   121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query:   181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCN 216
             KALDIG DPAALPKGQTINVG KDDVSAVKKVGCC+
Sbjct:   181 KALDIGDDPAALPKGQTINVGSKDDVSAVKKVGCCS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2086290 RABA1g "RAB GTPase homolog A1G" [Arabidopsis thaliana (taxid:3702)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 193/217 (88%), Positives = 206/217 (94%)

Query:     1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
             MAAYRAD+DYD+LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI V++K
Sbjct:     1 MAAYRADDDYDFLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDEK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
             IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HT++NIV
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIV 120

Query:   121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
             IMLVGNKADLRHL AVSTEDAKAFAERENTFFMETSALE++NVENAFTEVL+QIY V S+
Sbjct:   121 IMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRVASK 180

Query:   181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
             KALDIG D   LPKGQ+INVG KDDVS VKKVGCC++
Sbjct:   181 KALDIGDDHTTLPKGQSINVGSKDDVSEVKKVGCCSS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2018698 RABA1i "RAB GTPase homolog A1I" [Arabidopsis thaliana (taxid:3702)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 185/218 (84%), Positives = 205/218 (94%)

Query:     1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
             M AYRA++DYDYL+KVVL GDSGVGKSNLLSRFTRN+FS +S++TIGVEFATRSI+ +DK
Sbjct:     1 MGAYRAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
             IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTD+NIV
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query:   121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
             IMLVGNKADLRHL A+STE+AKAFAERENTFFMETSALE++NV+NAFTEVLTQIY VVS+
Sbjct:   121 IMLVGNKADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSK 180

Query:   181 KALDIGGDPA-ALPKGQTINVGGKDDVSAVKKVGCCNA 217
             KAL+ G DP  ALPKGQ INVGG+DD+SAVKK GCC+A
Sbjct:   181 KALEAGDDPTTALPKGQMINVGGRDDISAVKKPGCCSA 218

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2057624 ArRABA1h "RAB GTPase homolog A1H" [Arabidopsis thaliana (taxid:3702)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 182/216 (84%), Positives = 198/216 (91%)

Query:     1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
             M  Y+A++DYDYL+KVVL GDSGVGKSNLLSRFTRN+FS +S+STIGVEFATRSI+V+DK
Sbjct:     1 MGTYKAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRSTIGVEFATRSIQVDDK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
             IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR HTD+N V
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANTV 120

Query:   121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
             IMLVGNKADL HL A+STE+ K FAERENTFFMETSALE++NVENAFTEVLTQIY VVS+
Sbjct:   121 IMLVGNKADLNHLRAISTEEVKDFAERENTFFMETSALEAINVENAFTEVLTQIYRVVSK 180

Query:   181 KALDIGGDPA-ALPKGQTINVGGKDDVSAVKKVGCC 215
             KALD G DP  ALPKGQ INVG +DDVSAVKK GCC
Sbjct:   181 KALDAGDDPTTALPKGQMINVGSRDDVSAVKKSGCC 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2124593 RABA1e "RAB GTPase homolog A1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 175/216 (81%), Positives = 200/216 (92%)

Query:     1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
             M AYRAD+DYDYL+K+VLIGDSGVGKSNLLSRFTRNEFS+ESKSTIGVEFATRS+ V++K
Sbjct:     1 MGAYRADDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
             I+KAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+TRH+TFENVERWLKELR HTD+N+V
Sbjct:    61 IIKAQLWDTAGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVV 120

Query:   121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
             IMLVGNKADLRHL AV TE+A++F+EREN FFMETSAL++ NVE AFT VLTQIY V+SR
Sbjct:   121 IMLVGNKADLRHLRAVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYRVMSR 180

Query:   181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCN 216
             KALD  GDP +LPKGQTI++G KDDV+AVK  GCC+
Sbjct:   181 KALDGTGDPMSLPKGQTIDIGNKDDVTAVKSSGCCS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2124092 RABA1d "RAB GTPase homolog A1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 174/217 (80%), Positives = 194/217 (89%)

Query:     1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
             MA YRAD+DYDYL+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS+ V +K
Sbjct:     1 MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
             ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVERWL+ELR HTD NIV
Sbjct:    61 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query:   121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
             +MLVGNK+DLRHL AV TEDAK+FAE E+ +FMETSALES NVENAF+EVLTQIYHVVS+
Sbjct:   121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query:   181 KALDIGGDPAALP-KGQTINVGGKDDVSAVKKVGCCN 216
             KA++ G D   +P KG+ I+V    DVSAVKK GCC+
Sbjct:   181 KAMEAGEDSGNVPSKGEKIDV----DVSAVKKTGCCS 213

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2171943 RABA1c "RAB GTPase homolog A1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 169/217 (77%), Positives = 194/217 (89%)

Query:     1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
             MA YRAD++YDYL+KVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS+ V+DK
Sbjct:     1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
             ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVE WLKELR HTD NIV
Sbjct:    61 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query:   121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
             +MLVGNK+DLRHL AV TEDAK+FAE+E+ +FMETSALE+ NVENAF EVLTQI+H+VS+
Sbjct:   121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query:   181 KALDIGGDPAALP-KGQTINVGGKDDVSAVKKVGCCN 216
             KA++   + A +P KG  I++G   DVSAVKK GCC+
Sbjct:   181 KAMEAASESANVPSKGDKIDIG--KDVSAVKKGGCCS 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2202280 ARA-2 [Arabidopsis thaliana (taxid:3702)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 165/217 (76%), Positives = 196/217 (90%)

Query:     1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
             MA YRADE+YDYL+K+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT++ +VE K
Sbjct:     1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
             +VKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRH TFEN  RWL+ELRGHTD NIV
Sbjct:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIV 120

Query:   121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
             +ML+GNK DLRHL AV TE+AKAFAERE+ +FMETSAL++ NVENAFTEVLTQI+ +VS+
Sbjct:   121 VMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSK 180

Query:   181 KALDIGGDPAALP-KGQTINVGGKDDVSAVKKVGCCN 216
             +++D GG+ A LP KG+TINV  K+D S +K++GCC+
Sbjct:   181 RSVDGGGESADLPGKGETINV--KEDGSVLKRMGCCS 215

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

GO:0003924 "GTPase activity" evidence=IDA

TAIR|locus:2015576 RABA1b "RAB GTPase homolog A1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 161/217 (74%), Positives = 192/217 (88%)

Query:     1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
             MA YR ++DYDYL+KVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATR+++V+ K
Sbjct:     1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
             +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFENV+RWLKEL+ HTD NIV
Sbjct:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query:   121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
             +MLVGNK+DLRHL AV TED K++AE+E+  FMETSALE+ NVE+AF EVLTQIY + S+
Sbjct:   121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query:   181 KALDIGGDP-AALPKGQTINVGGKDDVSAVKKVGCCN 216
             K ++ G D  A++PKG+ I V  K+DVSA+KK+GCC+
Sbjct:   181 KQVEAGEDGNASVPKGEKIEV--KNDVSALKKLGCCS 215

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=IMP

TAIR|locus:2024276 RAB11c "RAB GTPase 11C" [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 146/217 (67%), Positives = 180/217 (82%)

Query:     3 AYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV 62
             A R DE+YDYL+KVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR+++VE + V
Sbjct:     2 ARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTV 61

Query:    63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM 122
             KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TFENV RWLKELR H DSNIVIM
Sbjct:    62 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 121

Query:   123 LVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKA 182
             L+GNK DL+HL AV+TEDA+++AE+E   F+ETSALE++NVE AF  +L+++Y ++S+K+
Sbjct:   122 LIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKS 181

Query:   183 L--DIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217
             +  D     A + +GQTI+V    + +A K   CC++
Sbjct:   182 ISSDQTTANANIKEGQTIDVAATSESNAKKP--CCSS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40520	RB11C_TOBAC	No assigned EC number	0.5806	0.9677	0.9459	N/A	no
Q5R9M7	RB11A_PONAB	No assigned EC number	0.6794	0.9631	0.9675	yes	no
Q40523	RB11A_TOBAC	No assigned EC number	0.6635	0.9723	0.9768	N/A	no
Q1PEX3	RAA1H_ARATH	No assigned EC number	0.8425	0.9907	0.9862	no	no
Q40521	RB11B_TOBAC	No assigned EC number	0.8888	0.9907	0.9907	N/A	no
Q40195	RB11E_LOTJA	No assigned EC number	0.7123	0.9861	0.9816	N/A	no
Q40194	RB11D_LOTJA	No assigned EC number	0.7397	0.9861	0.9816	N/A	no
Q40193	RB11C_LOTJA	No assigned EC number	0.6728	0.9723	0.9768	N/A	no
Q40191	RB11A_LOTJA	No assigned EC number	0.6036	0.9723	0.9336	N/A	no
Q39222	RAA1B_ARATH	No assigned EC number	0.7419	0.9861	0.9907	no	no
P17610	YPT3_SCHPO	No assigned EC number	0.6492	0.9631	0.9766	yes	no
Q9FJH0	RAA1F_ARATH	No assigned EC number	0.9351	0.9953	0.9953	yes	no
P40393	RIC2_ORYSJ	No assigned EC number	0.7880	0.9861	0.9861	no	no
Q9S810	RAA1I_ARATH	No assigned EC number	0.8486	1.0	0.9954	no	no
P28185	RAA1A_ARATH	No assigned EC number	0.7603	0.9861	0.9907	no	no
P51996	YPT32_YEAST	No assigned EC number	0.5813	0.9493	0.9279	yes	no
Q9FK68	RAA1C_ARATH	No assigned EC number	0.7788	0.9861	0.9907	no	no
P36412	RB11A_DICDI	No assigned EC number	0.6325	0.9861	1.0	yes	no
P62491	RB11A_HUMAN	No assigned EC number	0.6794	0.9631	0.9675	yes	no
Q9LK99	RAA1G_ARATH	No assigned EC number	0.8894	1.0	1.0	no	no
Q01111	YPT3_NICPL	No assigned EC number	0.7409	0.9907	0.9862	N/A	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.6746	0.9631	0.9675	yes	no
P22129	RB11B_DIPOM	No assigned EC number	0.6824	0.9631	0.9587	N/A	no
O49513	RAA1E_ARATH	No assigned EC number	0.8064	1.0	1.0	no	no
Q3MHP2	RB11B_BOVIN	No assigned EC number	0.6869	0.9493	0.9449	yes	no
Q40522	RB11D_TOBAC	No assigned EC number	0.5944	0.9677	0.9459	N/A	no
Q9SN35	RAA1D_ARATH	No assigned EC number	0.8018	0.9769	0.9906	no	no
Q39572	YPTC6_CHLRE	No assigned EC number	0.7116	0.9861	0.9907	N/A	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.6794	0.9631	0.9675	yes	no
Q39434	RB2BV_BETVU	No assigned EC number	0.6790	0.9723	0.9859	N/A	no
P62490	RB11A_CANFA	No assigned EC number	0.6794	0.9631	0.9675	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.6794	0.9631	0.9675	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.6794	0.9631	0.9675	yes	no
P62494	RB11A_RAT	No assigned EC number	0.6794	0.9631	0.9675	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003022001 SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (217 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-126
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-111
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-104
pfam00071	162	pfam00071, Ras, Ras family	6e-88
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-84
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-72
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-69
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	9e-68
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-67
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-66
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-65
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	5e-63
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-62
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-58
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	9e-58
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	9e-58
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-55
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-53
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	9e-51
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-50
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	9e-48
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-45
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	4e-45
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-44
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	6e-44
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-42
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-42
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	5e-42
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	8e-42
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-41
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-40
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	4e-39
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-37
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	9e-37
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-36
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-36
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-34
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-32
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-32
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-30
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	7e-30
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-29
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-29
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-29
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-29
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-29
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	5e-29
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-28
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	4e-28
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-26
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-26
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-26
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	3e-25
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	1e-24
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-24
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	4e-24
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	8e-24
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	9e-24
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	9e-24
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-23
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-23
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-23
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-23
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-22
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-21
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-21
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-20
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-20
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-20
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	4e-19
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	5e-18
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	5e-18
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	9e-18
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-17
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-17
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-16
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-15
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-15
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	4e-15
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-14
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	9e-13
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-11
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	4e-11
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-10
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-10
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	4e-10
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	7e-10
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-09
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-09
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-08
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	2e-08
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	6e-08
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	5e-07
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	5e-07
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	6e-07
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	6e-07
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	6e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-06
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	4e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	6e-06
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	6e-06
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	6e-05
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	4e-04
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	6e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	6e-04
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	8e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.002
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.003
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	0.004

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  353 bits (908), Expect = e-126
 Identities = 130/165 (78%), Positives = 149/165 (90%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           DYL+K+VLIGDSGVGKSNLLSRFTRNEF+L+SKSTIGVEFATR+I+++ K +KAQIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           GQERYRAITSAYYRGAVGALLVYD+T+  TFENVERWLKELR H DSNIVIMLVGNK+DL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           RHL AV TE+AKAFAE+    F+ETSAL+  NVE AF ++LT+IY
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  318 bits (816), Expect = e-111
 Identities = 143/217 (65%), Positives = 173/217 (79%), Gaps = 6/217 (2%)

Query: 3   AYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV 62
           A+R D +YDYL+K+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+++VE K V
Sbjct: 2   AHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTV 61

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM 122
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV+RWL+ELR H DSNIVIM
Sbjct: 62  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIM 121

Query: 123 LVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKA 182
           + GNK+DL HL +V+ ED +A AE+E   F+ETSALE+ NVE AF  +L +IYH++S+KA
Sbjct: 122 MAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKA 181

Query: 183 L---DIGGDPAALPKGQTINVGGKDDVSAVKKVGCCN 216
           L   +   +     +G TINV    D S   K GCC+
Sbjct: 182 LAAQEAAANSGLPGQGTTINVA---DTSGNNKRGCCS 215

Length = 216

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  296 bits (761), Expect = e-104
 Identities = 101/163 (61%), Positives = 125/163 (76%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K++LIGDSGVGKS+LLSRFT  +FS + KSTIGV+F T++I V+ K VK QIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R+ITS+YYRGAVGALLVYD+T   +FEN+E WLKELR +   N+VIMLVGNK+DL   
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
             VS E+A+AFAE     F ETSA  + NVE AF E+  +I  
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  255 bits (655), Expect = 6e-88
 Identities = 90/161 (55%), Positives = 115/161 (71%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+VL+GD GVGKS+LL RFT+N+F  E   TIGV+F T++I V+ K VK QIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           +RA+   YYRGA G LLVYD+T   +FENV++WL+E+  H D N+ I+LVGNK DL    
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
            VSTE+ +A A+     FMETSA  + NVE AF E+  +I 
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  246 bits (630), Expect = 4e-84
 Identities = 90/157 (57%), Positives = 117/157 (74%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VLIGDSGVGK++LL RF  N+FS   KSTIGV+F +++I V+ K VK QIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R+ITS+YYRGA GA+LVYDVT   +FEN+++WL EL+ +   NI I+LVGNK+DL   
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
             VSTE+A+ FA+     F ETSA    NV+ AF  +
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  215 bits (551), Expect = 4e-72
 Identities = 81/162 (50%), Positives = 111/162 (68%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GDS VGKS+++ RF +NEFS   +STIG  F T+++ ++D  VK +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RYR++   YYRGA  A++VYD+T   +FE  + W+KEL+ H   NIVI L GNKADL   
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
             VSTE+A+ +A+     FMETSA    NV   FTE+  ++ 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  209 bits (533), Expect = 2e-69
 Identities = 88/166 (53%), Positives = 112/166 (67%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           Y YL+K ++IGD+GVGKS LL +FT   F      TIGVEF  R I ++ K +K QIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+ IML+GNK D
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           L     VS E+ +AFA      FMETSA  + NVE AF     +IY
Sbjct: 121 LESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 166

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  204 bits (522), Expect = 9e-68
 Identities = 83/163 (50%), Positives = 111/163 (68%)

Query: 12  YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
           YL+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K VK QIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
           QER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               V   +AK FA+     F+ETSA  + NVE AF  +  +I
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  204 bits (522), Expect = 1e-67
 Identities = 80/164 (48%), Positives = 113/164 (68%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           DYL+K++LIGDSGVGKS LL RF+ + F+    STIG++F  R+I ++ K +K QIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           GQER+R IT++YYRGA+G +LVYD+T   +FEN++ W++ +  H   ++  MLVGNK D+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                VS E+ +A A      F+ETSA  ++NVE AF  +   I
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  203 bits (517), Expect = 2e-66
 Identities = 95/208 (45%), Positives = 129/208 (62%), Gaps = 2/208 (0%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           Y YL+K ++IGD+GVGKS LL +FT   F      TIGVEF  R I +++K +K QIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H ++N+ IML+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDP 189
           L H  AVSTE+ + FA+     FME SA  + NVE AF +   +IY  +     D+  + 
Sbjct: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNES 182

Query: 190 AALPKG--QTINVGGKDDVSAVKKVGCC 215
             +  G        G  D ++ +  GCC
Sbjct: 183 YGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  198 bits (506), Expect = 3e-65
 Identities = 85/164 (51%), Positives = 111/164 (67%)

Query: 12  YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
           Y++K ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I V  + +K QIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
           QER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R  T+ N VI L+GNKADL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
               V+ E+AK FA+     F+E SA    NVE+AF E   +IY
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  193 bits (491), Expect = 5e-63
 Identities = 77/165 (46%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           D+L+K++LIGDS VGK+ ++ RF    FS    +TIGV+F  +++ ++ K VK QIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           GQER+R IT +YYR A GA++ YD+TR  +FE+V  W++E+  +  SN+V++L+GNK DL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 131 RHLCAVSTEDAKAFAERENTFF-METSALESMNVENAFTEVLTQI 174
                V  E+A   AE       +ETSA ES NVE AF  + T++
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  190 bits (485), Expect = 3e-62
 Identities = 82/162 (50%), Positives = 114/162 (70%), Gaps = 2/162 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            K++LIGDSGVGKS+LL RFT + F  +  STIGV+F  +++ V+ K VK  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
           R+R +TS+YYRGA G +LVYDVTR  TF+N++ WL EL  ++ + + V MLVGNK D  +
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V+ E+ + FA + N  F+ETSA   + V+ AF E++ +I
Sbjct: 121 R-EVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  181 bits (462), Expect = 5e-58
 Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 6/210 (2%)

Query: 12  YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWDTA 70
           Y +++++IGDS VGKS+LL RFT   F+  S  T+GV+F +R I +E    +K Q+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKAD 129
           GQER+R+IT +YYR +VG LLV+D+T   +FE+V  WL+E R H      V +LVG+K D
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIG--- 186
           L     V+ E+A+  A+     ++ETSA    NVE AF  +  +IY  + R  L      
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGW 180

Query: 187 -GDPAALPKGQTINVGGKDDVSAVKKVGCC 215
            G  +  P G+  ++  +    A  +  CC
Sbjct: 181 DGVKSGFPAGRAFSLEERSPTFASPEKSCC 210

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  179 bits (456), Expect = 9e-58
 Identities = 61/157 (38%), Positives = 109/157 (69%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+V +GD  VGK+++++RF  + F  + ++TIG++F ++++ V+DK V+ Q+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+N ++W+ ++R    ++++I+LVGNK DL   
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
             VSTE+ +  A+  N  F+ETSA    NV+  F ++
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKI 157

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  179 bits (456), Expect = 9e-58
 Identities = 78/156 (50%), Positives = 102/156 (65%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V  K VK QIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R++T +YYRGA GALLVYD+T   +F  +  WL + R     +IVI+LVGNK DL   
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169
             V+  +A  FA+     F+ETSAL   NVE AF +
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLK 156

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  174 bits (442), Expect = 3e-55
 Identities = 83/166 (50%), Positives = 110/166 (66%), Gaps = 1/166 (0%)

Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           DYD+L+K+++IGDSGVGKS+LL RF  N FS    +TIGV+F  R++ +  + VK QIWD
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWD 61

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQER+R ITS YYRG  G ++VYDVT   +F NV+RWL+E+  + D  +  +LVGNK 
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD-VCKVLVGNKN 120

Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           D      V TEDA  FA +      ETSA E++NVE  F  +   +
Sbjct: 121 DDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELV 166

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  168 bits (428), Expect = 2e-53
 Identities = 71/167 (42%), Positives = 116/167 (69%)

Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
           EDYD+L+K+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ ++ + +K QIW
Sbjct: 2   EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
           DTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  + ++ ++ +LVGNK
Sbjct: 62  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNK 121

Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            DL     VS + A+ F++ ++ +++ETSA ES NVE  F ++  ++
Sbjct: 122 IDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  162 bits (411), Expect = 9e-51
 Identities = 66/164 (40%), Positives = 107/164 (65%), Gaps = 5/164 (3%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + V+D++V  QIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKAD 129
           R++++  A+YRGA   +LVYDVT   +FE+++ W  E           N   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 130 LRHLCAVSTEDAKAFAE-RENTFFMETSALESMNVENAFTEVLT 172
           L     VST+ A+ + + + N  + ETSA E++NV+ AF  +  
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  161 bits (409), Expect = 1e-50
 Identities = 62/161 (38%), Positives = 99/161 (61%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +KVVL+G+  VGK++L+ R+  N+F+ + +ST    F  +++ +  K +   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY A+   YYR A GA+LVYD+T   +F+ V++W+KEL+    +NI +++VGNK DL   
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             VS  +A+ +A+       ETSA     +E  F  +  ++
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  155 bits (392), Expect = 9e-48
 Identities = 78/164 (47%), Positives = 106/164 (64%), Gaps = 1/164 (0%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           +KV+L+GDSGVGK+ LL RF    F   S   T+G++F  + + V+   VK QIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132
           ER+R++T AYYR A   LL+YDVT   +F+N+  WL E+  +  S++VIML+GNKAD+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
              V  ED +  A+     FMETSA   +NVE AFT V  ++ H
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKH 164

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  147 bits (374), Expect = 3e-45
 Identities = 60/162 (37%), Positives = 83/162 (51%), Gaps = 4/162 (2%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
            K+V++GD  VGKS LL+R   N+ S  E K      + T  I  + K  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHV--TFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           E Y AI   YYR    +L V+D+   V    E +E+  KE+  H +S + I+LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172
           R    + T  A  FA+      +  SA    N+++AF  V  
Sbjct: 122 RDA-KLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  147 bits (372), Expect = 4e-45
 Identities = 65/162 (40%), Positives = 106/162 (65%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           ++K+++IG+S VGK++ L R+  + F+    ST+G++F  +++   DK +K QIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132
           ERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LVGNK D+  
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              VS E  +  A++    F E SA E++NV+  F  ++  I
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  147 bits (373), Expect = 1e-44
 Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 9/162 (5%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWDTAGQ 72
           +KV++IGD GVGK++++ R+    FS   K+TIGV+FA + I  +   +V+ Q+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RGHTDSNIVIMLVGNKA 128
           ER+  +T  YY+GAVGA++V+DVTR  TFE V +W  +L           I  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 129 DL-RHLCAVSTEDAKAFAERENTF--FMETSALESMNVENAF 167
           DL +   A   E    F  +EN F  + ETSA E++N+E A 
Sbjct: 121 DLKKERLAKDPEQMDQFC-KENGFIGWFETSAKENINIEEAM 161

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  145 bits (368), Expect = 6e-44
 Identities = 89/214 (41%), Positives = 119/214 (55%), Gaps = 20/214 (9%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRVEDKIVKAQIWD 68
           YD  +K++LIGDSGVGKS+LL  F  +  S+E  + TIGV+F  + + V  K +K  IWD
Sbjct: 11  YDLSFKILLIGDSGVGKSSLLVSFISS--SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWD 68

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGH-TDSNIVIMLVGN 126
           TAGQER+R +TS+YYR A G +LVYDVTR  TF N  + W KE+  + T+ + V MLVGN
Sbjct: 69  TAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGN 128

Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIG 186
           K D      VS E+  A A+     F+E SA    NVE  F E+  +I  V         
Sbjct: 129 KVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV--------- 179

Query: 187 GDPAALPKGQTIN----VGGKDDVSAVKKVGCCN 216
             P+ L +G T      +  K +       GCC+
Sbjct: 180 --PSLLEEGSTAVKRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  141 bits (357), Expect = 1e-42
 Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 11/168 (6%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI-------- 61
           YDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +    +         
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 62  --VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-N 118
             V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ H    N
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 119 IVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166
             I+L+GNKADL     VS   A+  A++    + ETSA    NVE A
Sbjct: 121 PDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  140 bits (353), Expect = 3e-42
 Identities = 66/157 (42%), Positives = 98/157 (62%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           ++++LIGDSGVGK+ LL RFT NEF     STIGV+F  ++I V+   V+ QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY+ IT  YYR A G  LVYD++   +++++ +W+ ++  +    +  +L+GNKAD    
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
             V  E     A+     F ETSA  + N++ +FT +
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRL 157

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  139 bits (352), Expect = 5e-42
 Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 2/161 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++G  GVGKS L  RF   EF  E   TI  +   + I V+ +     I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRHL 133
           + A+   Y R   G +LVY +T   +FE ++   ++ LR     ++ I+LVGNK DL + 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             VSTE+ +A AE     F+ETSA  ++N++  F  ++ +I
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  139 bits (351), Expect = 8e-42
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 5/159 (3%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ ++ + +K Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 74  RYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVI-MLVGNKADLR 131
           R+R ++   YYR     + VYDVT   +F ++  W++E   H+  N V  +LVGNK DLR
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 132 HLCAVSTEDAKAFAERENTFFMETSA---LESMNVENAF 167
               V T+ A+ FA+  +    ETSA    E+ +VE  F
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  140 bits (354), Expect = 1e-41
 Identities = 67/193 (34%), Positives = 94/193 (48%), Gaps = 18/193 (9%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           +   +K+V++GD GVGK+ LL+R   +EF      TIG     ++I    + +K Q+WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKA 128
           AGQE YR++   YYRGA G L+VYD T    + E  E WL+ELR     ++ I+LVGNK 
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 129 DLRH------------LCAVSTEDAKAFAERENTF---FMETSA--LESMNVENAFTEVL 171
           DL                 V        A          +ETSA  L   NV   F E+L
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 172 TQIYHVVSRKALD 184
            ++   + +  L 
Sbjct: 182 RKLLEEIEKLVLK 194

Length = 219

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  136 bits (344), Expect = 2e-40
 Identities = 66/172 (38%), Positives = 110/172 (63%), Gaps = 4/172 (2%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +V++IG  GVGK++L+ RFT + F    KST+GV+F  +++ +  K ++ QIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           + +ITSAYYR A G +LVYD+T+  TF+++ +W+K +  +   +  ++LVGNK D     
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 135 AVSTEDAKAFAER-ENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDI 185
            ++ +  + FA++     F E SA ++ NV+  F +++  I   + +  LDI
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI---LKKMPLDI 170

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  132 bits (334), Expect = 4e-39
 Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 15/170 (8%)

Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKST-------IGVEFATRSIRVEDK 60
           + YDYL K +L+GDS VGK  +L+       SL+  ST       +G+++ T +I ++ +
Sbjct: 1   KAYDYLLKFLLVGDSDVGKGEILA-------SLQDGSTESPYGYNMGIDYKTTTILLDGR 53

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
            VK Q+WDT+GQ R+  I  +Y RGA G +LVYD+T   +F+ ++RW+KE+  H    + 
Sbjct: 54  RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVP 112

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
            +LVGN+  L     V+TE A+A+AER    F E S L + N+  +FTE+
Sbjct: 113 KILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  128 bits (323), Expect = 1e-37
 Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 6/167 (3%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L KV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + + V+   V  QIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKA 128
           ER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 129 DLRHLCAVSTEDAKAF-AERENTFFMETSALESMNVENAFTEVLTQI 174
           D+     VSTE+A+A+  +  +  + ETSA ++ NV  AF E + ++
Sbjct: 125 DIPER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  126 bits (317), Expect = 9e-37
 Identities = 61/155 (39%), Positives = 90/155 (58%), Gaps = 3/155 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI--RVEDKIVKAQIWDTAGQ 72
           KV+++G+  VGKS+++ RF +  F+ + K TIGV+F  + I  R  D+ V+  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132
           E + AIT AYYRGA   +LV+  T   +FE +E W KE       +I ++LV  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESW-KEKVEAECGDIPMVLVQTKIDLLD 120

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
              ++ E+A+A A+R       TS  +  NV   F
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  125 bits (317), Expect = 1e-36
 Identities = 62/163 (38%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +  F  E   TI  +   + I ++ ++    I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE--LRGHTDSNIVIMLVGNKADLR 131
            + A+   Y R   G LLVY +T   +FE + +  +E  LR     ++ I+LVGNK DL 
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAK-FREQILRVKDRDDVPIVLVGNKCDLE 120

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           +   VSTE+ K  A +    F+ETSA E +NV+ AF +++ +I
Sbjct: 121 NERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  125 bits (316), Expect = 2e-36
 Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +  F  +   TI  +   + I ++ ++    I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE--LRGHTDSNIVIMLVGNKADLR 131
            + A+   Y R   G LLVY +T   +FE +++  +E  LR     ++ I+LVGNK DL 
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLE 118

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VSTE+ K  A +    F+ETSA E +NV+ AF +++ +I
Sbjct: 119 SERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  118 bits (299), Expect = 5e-34
 Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 5/165 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KV+ +G+SGVGKS ++ R+    F  +   TIG+++  + + V +K V+   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR----GHTDS-NIVIMLVGNKAD 129
           Y  + + +Y+   G LLVYDVT   +FE ++ WLKE++     H +  NIV+++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           L    AVS ++ + +AE +   + ETSA     V   F  + + I
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  114 bits (288), Expect = 2e-32
 Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 4/157 (2%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K++L+GDS VGKS L+ RF  + +  +  ST  +     + + E K +    WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           ++ + ++YY  A   +LV+DVTR +T++N+ +W +ELR +    I  ++V NK DL    
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE-IPCIVVANKIDLD--- 117

Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171
              T+    FAE+ N      SA +  NV   F + +
Sbjct: 118 PSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI 154

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  114 bits (288), Expect = 4e-32
 Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           KVV++G   VGK++L+ R+  + F +   ++TIG  F  + + V +++V   IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--- 130
           RY A++  YYRGA  A++ YD+T   +FE  + W+KEL+ + + +  I L G K+DL   
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ-NLEEHCKIYLCGTKSDLIEQ 120

Query: 131 -RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
            R L  V   D + FA+       ETS+    NV+  F +V
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  109 bits (275), Expect = 2e-30
 Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 2/162 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F ++ F  +   TI   + T+   ++ +  +  I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
            + A+   Y R   G LLV+ VT   +FE V+++  + LR        ++LVGNKADL H
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              VS E+ +  A +    ++ETSA + +NV+ AF +++  I
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  108 bits (272), Expect = 7e-30
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 15/168 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD  VGK+ LL  +T N+F  E   T+  +  + ++ V+ K V   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      LL + V    +FENV+  W  E++ H   N+ I+LVG K DLR  
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIK-HYCPNVPIILVGTKIDLRDD 119

Query: 132 ---------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
                        ++ E+ +  A+      +ME SAL    ++  F E
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDE 167

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  108 bits (272), Expect = 1e-29
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 2/161 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F    F      TI   F ++ I  + +    +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRGHTDSNIVIMLVGNKADLRHL 133
           Y  +   Y  G  G +LVY VT   +FE V+  + K L      ++ I+LVGNK+DL   
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             VS E+ K  AE     F+E+SA E+ NVE AF  ++ +I
Sbjct: 122 RQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  107 bits (269), Expect = 2e-29
 Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 3/159 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KV+++GD  VGK+ L++RF ++ F    K+TIGV+F      V       Q+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH- 132
           ++ I S YYRGA   ++V+D+T   + E+  +WL++ L+ +  S++++ LVG K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 133 -LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
              A+  +DA   A      +   SAL   NV + F  V
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  107 bits (268), Expect = 2e-29
 Identities = 49/139 (35%), Positives = 88/139 (63%)

Query: 36  NEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV 95
           + F    +STIG++F ++++ +++  V+ Q+WDTAGQER+R++  +Y R +  A++VYD+
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 96  TRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMET 155
           T   +FEN  +W++++      +++I LVGNK DL  L  V+ E+    A+  NT F ET
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHET 122

Query: 156 SALESMNVENAFTEVLTQI 174
           SA    N++  F ++  ++
Sbjct: 123 SAKAGHNIKVLFKKIAAKL 141

Length = 176

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  107 bits (268), Expect = 2e-29
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 17/161 (10%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE-----FATRS--IRVEDKIVKAQI 66
           +K+VL+GD G GK+  + R    EF  +  +T+GVE     F T    IR         +
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFN-------V 53

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQE++  +   YY     A++++DVT  VT++NV  W ++L      NI I+L GN
Sbjct: 54  WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGN 112

Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
           K D++            F  ++N  + E SA  + N E  F
Sbjct: 113 KVDIKD--RKVKPKQITFHRKKNLQYYEISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  107 bits (269), Expect = 3e-29
 Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 11/184 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR-SIRVEDKIVKAQIWDTAGQE 73
           K+V++GD GVGK+ L  +   N F      TI  E + R  + V+ +    ++ DTAGQE
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI--EDSYRKQVVVDGQPCMLEVLDTAGQE 58

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR---GHTDSNIVIMLVGNKADL 130
            Y A+   + R   G +LVY +T   TFE VER+ ++++     + +++ IM+VGNK D 
Sbjct: 59  EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK 118

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPA 190
            +   VSTE+  A A R    F+E SA  ++NVE AF  ++  +     R+    G  P 
Sbjct: 119 VYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL-----RQQRQGGQGPK 173

Query: 191 ALPK 194
             P 
Sbjct: 174 GGPT 177

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  106 bits (266), Expect = 5e-29
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75
           +V++GD  VGK+ LL  +T N F  +   T+   ++   + V+ K V+  +WDTAGQE Y
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAGQEDY 59

Query: 76  RAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR--- 131
             +    Y      L+ + V    +FENV E+W  E++ H   N+ I+LVG K DLR   
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVK-HFCPNVPIILVGTKLDLRNDK 118

Query: 132 ---------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
                        V+ E  +A A+R     ++E SAL    V   F E
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEE 166

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  104 bits (260), Expect = 3e-28
 Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 8/166 (4%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++ + V+  I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQLNILDTAGQE 59

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTF----ENVERWLKELRGHTDSNIVIMLVGNKAD 129
            Y AI   Y+R   G LLV+ +T   +F    E  E+ L   R   D N+ ++LVGNK D
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQIL---RVKEDDNVPLLLVGNKCD 116

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           L     VS E+A   AE+    ++ETSA    NV+  F +++ +I 
Sbjct: 117 LEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  104 bits (261), Expect = 4e-28
 Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 7/183 (3%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +N F  E   TI   +  +   ++++     I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
            Y A+   Y R   G L VY +T   +FE +  + ++ LR      + ++LVGNK DL  
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAAL 192
              VST + +  A+     F+ETSA + +NV+ AF E++ +I     RK L         
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI-----RKYLKEDMPSQKQ 179

Query: 193 PKG 195
            K 
Sbjct: 180 KKK 182

Length = 189

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  101 bits (253), Expect = 1e-26
 Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 5/176 (2%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI-VKAQIWDTAGQ 72
            K+V++GD   GK++L+ RF +  F    K TIG++F +R I +   + V  Q+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWL---KELRGHTDSNIVIMLVGNKAD 129
           +    +   Y  GA    LVYD+T   +FEN+E WL   K++   +++   ++LVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV-VSRKALD 184
           L H   V+ E    FA+  +   +  SA     V   F  +  ++  V +S+  L+
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELE 176

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++  + ++++   DS+ V M LVGNK DL  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              VST   +  A+     ++ETSA     VE AF  ++ +I
Sbjct: 121 R-TVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 99.3 bits (248), Expect = 4e-26
 Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 17/174 (9%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWDT 69
           D   K+V++GD G GK+ LL  + +  F  E   T+  E    +++V + KI++  +WDT
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDT 59

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKA 128
           AGQE Y  +    Y      L+ Y V    + +NV ++W  E+  H      I+LVG K 
Sbjct: 60  AGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGLKT 118

Query: 129 DLR------------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
           DLR             L  V+ E  ++ A+      ++E SA    NV+  F  
Sbjct: 119 DLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDA 172

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 97.8 bits (244), Expect = 3e-25
 Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 14/190 (7%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K++L+GD GVGK+  + R    EF  +   T+GVE            +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY     A++++DVT  +T++NV  W +++    + NI I+LVGNK D    
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVD---- 124

Query: 134 CAVSTEDAKA----FAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDP 189
             V     KA    F  ++N  + + SA  + N E  F  +  ++    +   L   G P
Sbjct: 125 --VKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRL---TNDPNLVFVGAP 179

Query: 190 AALPKGQTIN 199
           A  P+   I+
Sbjct: 180 ALAPEEIQID 189

Length = 215

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 94.9 bits (236), Expect = 1e-24
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +  F  +   TI   +  + + V+ +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE--LRGHTDSNIVIMLVGNKADLR 131
           ++ A+   Y +   G +LVY +T   TF +++  L+E  LR     ++ ++LVGNK DL 
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLE 119

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               V  E  +  A +    F+ETSA   +NV   F +++ QI
Sbjct: 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 95.6 bits (238), Expect = 2e-24
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 17/161 (10%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE-----FATRSIRVEDKIVKAQIWD 68
           +K+V++GD G GK+  + R    EF  + + TIGVE     F T   ++     +   WD
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYCWD 68

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK 
Sbjct: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKV 127

Query: 129 DLRHLCAVSTEDAKA--FAERENTFFMETSALESMNVENAF 167
           D+++        AK   F  ++N  + E SA  + N E  F
Sbjct: 128 DVKN----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Length = 219

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 93.4 bits (232), Expect = 4e-24
 Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 4/161 (2%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           Y+VV+ G  GVGKS+L+ RF +  F      TI   +  + I     I   QI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSH 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE---RWLKELRGHTDSNIVIMLVGNKADL 130
           ++ A+           +LVY +T   + E ++     + E++G+    I IMLVGNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171
                VS+ +  A A   N  FMETSA  + NV+  F E+L
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 92.6 bits (230), Expect = 8e-24
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRVED--KIVKAQIWDTA 70
           +  ++GD  VGKS L+  F  +   F      T G +   +++ V D    V+  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKAD 129
           GQE +  +    +       +VYDVT  V+F N  RW+  +R H+   +   +LVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
           L     V    A+A A+     F ETSA E +  E  F   L + +H
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLS-LARAFH 167

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 92.6 bits (230), Expect = 9e-24
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 4/163 (2%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YKVV++G  GVGKS L  +F    F  +   TI  +F  + I V+      +I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE--LRGHTDSNIVIMLVGNKADLR 131
           ++ ++   Y +   G ++VY +    TF+++ + +++  +R      + I+LVGNK DL 
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS+ + +A AE     FMETSA     V   F E++ Q+
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 92.8 bits (231), Expect = 9e-24
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+ L+GD+ +GK++L+ ++   EF  E   T+GV F  ++I +    +   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL---- 130
           +  +     + AV  L ++D+TR  T  +++ W ++ RG   + I I LVG K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYDLFADL 120

Query: 131 -RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
                   T+ A+ +A+      +  S   S+NV+  F  VL +++
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKVF 166

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 92.5 bits (230), Expect = 1e-23
 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 5/164 (3%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +N F      TI   +  + + ++ +    +I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQ-VEIDGRQCDLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE--LRGHTDSNIVIMLVGNKADLR 131
           ++ A+   Y +   G LLVY VT   +   +   L+E  LR     N+ ++LVGNKADL 
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLE 119

Query: 132 HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
               VS ED  + +++     F ETSA +  NV+  F +++ QI
Sbjct: 120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 92.3 bits (230), Expect = 1e-23
 Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 6/162 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+ ++G SGVGKS L  RF    F  E +  +   + +R + ++ + V  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 75  YRA--ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGH--TDSNIVIMLVGNKADL 130
                      R A G +LVY +T   +F+ V + L+ +R     D  I ++LVGNKADL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMN-VENAFTEVL 171
            H   VSTE+ +  A      F E SA E+   V+N F E+ 
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELC 161

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 92.1 bits (229), Expect = 1e-23
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 16/167 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K VL+GD  VGK++L+  +T N +  E   T    F+   + V+ K V+ Q+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           +  +    Y      LL + V    +F+N+ E+W+ E+R H +    I+LVG +ADLR  
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTD 119

Query: 132 -----HLC-----AVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                 L       VS   AKA AE+     ++E SAL   N++  F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 90.7 bits (225), Expect = 5e-23
 Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +  F  +   TI  +   + I V+ +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE--LRGHTDSNIVIMLVGNKADLR 131
           ++ A+   Y +   G  LVY +T   +F +++  L+E  LR     ++ ++LVGNK DL 
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQD-LREQILRVKDTEDVPMILVGNKCDLE 119

Query: 132 HLCAVSTEDAKAFAER-ENTFFMETSALESMNVENAFTEVLTQI 174
               VS E+ +  A +  N  F+ETSA   +NV+  F +++ QI
Sbjct: 120 DERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 88.7 bits (220), Expect = 2e-22
 Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 15/166 (9%)

Query: 17  VLIGDSGVGKSNLLSRFTRNEFSLESK---STIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           V++G  GVGKS+LL+     E    S    +T   +       ++   VK  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 74  RY-----RAITSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRGHTDSNIVIMLVGNK 127
            +       +     RGA   LLV D T   + E+ +   L+ LR      I I+LVGNK
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNK 115

Query: 128 ADLRHLCAVS-TEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172
            DL     V      +  A+       E SA     V+  F +++ 
Sbjct: 116 IDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 87.4 bits (216), Expect = 2e-21
 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 15/186 (8%)

Query: 19  IGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI 78
           +GD G GK+  + R    EF  +  +T+GVE            ++  +WDTAGQE++  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 79  TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--RHLCAV 136
              YY     A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R + A 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKDRKVKAK 119

Query: 137 STEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI-----YHVVSRKAL---DIGGD 188
           S      F  ++N  + + SA  + N E  F  +  ++        V+  AL   ++  D
Sbjct: 120 SI----TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 175

Query: 189 PAALPK 194
           PA   +
Sbjct: 176 PALAAQ 181

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 86.4 bits (214), Expect = 3e-21
 Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 4/172 (2%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS +  +F  + F      TI   + T+  R++++     I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQA 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL--RGHTDSNIVIMLVGNKADLR 131
            + A+   Y R   G ++ Y VT   +F+    + KEL  R     +I ++LVGNK DL 
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEF-KELITRVRLTEDIPLVLVGNKVDLE 120

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183
               V+TE+ +  A   N  F ETSA     +++AF  ++ +I    S  AL
Sbjct: 121 QQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 85.7 bits (212), Expect = 1e-20
 Identities = 60/186 (32%), Positives = 85/186 (45%), Gaps = 38/186 (20%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KVVL+GD  VGK++LL R+    F  ++ ST+G  F  +     +      IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQWGPYN----ISIWDTAGREQ 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           +  + S Y RGA   +L YDV+   + E +E     L    + + +  +VGNK DL    
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 135 A-------------------VSTEDAKAFAERENTFFM--------------ETSALESM 161
           A                   V+ EDAKAF +R N + M              ETSA    
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 162 NVENAF 167
           NV+  F
Sbjct: 177 NVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 82.1 bits (203), Expect = 3e-20
 Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KVV+IGD G GKS+LLS+    EF  E     G   A  ++ V+       IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVER---WLKELRGHTDSNIVIMLVGNK 127
            +     + + A   LLVYD+T   +   V R   WL  LR      I ++LVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 83.8 bits (207), Expect = 3e-20
 Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KVV++GD   GK++LL+ FTR  F    + T+  E     I V+   V+  +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           +  + S  Y      +L + V    + ENVE +WL E+R H    + ++LV  K DLR  
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPG-VKLVLVALKCDLREP 119

Query: 132 ------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
                     +S E+  A A+R N   ++E SA  +  V  AFTE
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTE 164

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 81.7 bits (202), Expect = 4e-19
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 1/162 (0%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           Y+VVL+GDSGVGKS+L + FT   +   +    G +   R++ V+ +     ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKADLRH 132
               +  +  +     ++VY VT   +FE       +LR      +I I+LVGNK+DL  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              VS ++ +A A   +  F+ETSA    NV+  F  ++ Q+
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQV 162

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 78.3 bits (193), Expect = 5e-18
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK++LL  FT  EF  E   T+   + T   RV+ K V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL 133
           Y  +    Y  A   L+ + +    + ENV  +W++E+R +   N+ ++LVG K DLR  
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQE 120

Query: 134 CA----------VSTEDAKAFAERENT-FFMETSALESMNVENAFTEVLTQ 173
                       V  + AK  A       +ME SAL    V++ F E  T+
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF-EAATR 170

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 78.3 bits (193), Expect = 5e-18
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           ++V +G +GVGK+ L+ RF  + F  + + T+  E  ++   V    V   I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRHL 133
           + A+     +      LVY V    +FE V+R  +E L    D  + I++VGNK D    
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 134 CAVSTEDAKAFAERE-NTFFMETSALESMNVENAFTEVLTQ 173
             V   DA +  E + N  F+E SA ++ NV   F E+L Q
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 77.1 bits (190), Expect = 9e-18
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +A AE+   F ++E SA     V   F
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 76.8 bits (189), Expect = 1e-17
 Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 14/165 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ V+   V   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    YRGA   LL + +    ++ENV ++W+ ELR H    + I+LVG K DLR  
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELR-HYAPGVPIVLVGTKLDLRDD 120

Query: 132 ------HLCAVSTEDAKAFAERENT---FFMETSALESMNVENAF 167
                 H  AV    A+    R+      ++E S+    NV+  F
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 75.6 bits (186), Expect = 3e-17
 Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 120

Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 171

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 74.3 bits (182), Expect = 2e-16
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++ ++  V+ + V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  + +  Y      ++ + +    ++ENV  +W  E+  H   N+ I+LVG K DLR+ 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEV-CHHCPNVPILLVGTKKDLRND 122

Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQIYHVVSR 180
                         ++ +   A A++ +   ++E SAL    V+  F E +  + +    
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPI 182

Query: 181 K 181
           K
Sbjct: 183 K 183

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 14/158 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWDTAGQE 73
           K++L+G  GVGK++L  +    +F  +  ST G+      I   + K ++  +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 74  RYRA-----ITS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
            Y A     +TS + Y      LLV+D+        V  WL++++        ++LVG  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFG-GVSPVILVGTH 115

Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165
            D      +  +                S      +  
Sbjct: 116 IDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 70.2 bits (172), Expect = 3e-15
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+VL+GDS  GK+ LL  F ++ F      T+  E  T S  V+ + ++  +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131
           Y  +    Y  +   L+ +D++R  T ++V ++W  E+R     N  ++LVG K+DLR
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLR 118

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 69.7 bits (171), Expect = 4e-15
 Identities = 53/160 (33%), Positives = 72/160 (45%), Gaps = 12/160 (7%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           ++VLIGD GVGKS+L+      EF         +   T    V  + V   I DT+ + +
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRV--LPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-H 132
            RA  +A  R A    LVY V R  T E +  +WL  +R      + I+LVGNK+DLR  
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDG 120

Query: 133 LCAVSTEDA-----KAFAERENTFFMETSALESMNVENAF 167
                 E+        F E E    +E SA   +NV   F
Sbjct: 121 SSQAGLEEEMLPIMNEFREIET--CVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 68.0 bits (166), Expect = 2e-14
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120

Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E  +  A + +   ++E SAL    ++N F E +
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 63.9 bits (155), Expect = 9e-13
 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 23/179 (12%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F ++ F      T+  E  T S  ++ + ++  +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y  +   L+ +D++R  T ++V ++W  E++     N  ++LVG K+DLR  
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 124

Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQIYHVVS 179
                         VS +     A++     ++E SAL+S   EN+  +    I+HV +
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS---ENSVRD----IFHVAT 176

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 60.8 bits (147), Expect = 1e-11
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 16/175 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +  + F  E   T+   +A  S+ V  K     ++DTAGQE 
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQED 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + V    +F+NV E W+ EL+ +   N+  +L+G + DLR  
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLRDD 119

Query: 133 ---LCAVSTEDAKAFAERENT---------FFMETSALESMNVENAFTEVLTQIY 175
              L  ++    K     +            ++E SAL    ++  F E +  I 
Sbjct: 120 PKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 13/165 (7%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           Y++V++G S VGK+ ++SRF    F  +   TI  +F  +   +  ++ +  I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 74  RYRAITS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRG---------HTDSNIVIML 123
            + A+   +   G V  +LV+ +    +FE V R  +++             +  I +++
Sbjct: 60  PFPAMRRLSILTGDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI 118

Query: 124 VGNKADLRHLCAVSTEDAKAF-AERENTFFMETSALESMNVENAF 167
            GNKAD      V  ++ +      EN  + E SA ++ N++  F
Sbjct: 119 CGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 13/129 (10%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV---EDKIVKAQIWDTAGQ 72
           +V++G    GK+ +L R   NEF + +  T G  F T  I+V     K V    WD  GQ
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RGHTDSNIVIMLVGNKA 128
           E+ R +  +Y R   G + V D    V  E +E    EL    +   +  + ++++ NK 
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVD---SVDVERMEEAKTELHKITKFSENQGVPVLVLANKQ 119

Query: 129 DLRHLCAVS 137
           DL +   VS
Sbjct: 120 DLPNALPVS 128

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 9/163 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G  G GK+ +L +    E    +  TIG  F   ++    K VK  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVV-TTIPTIG--FNVETVEY--KNVKFTVWDVGGQDK 55

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHL 133
            R +   YY    G + V D +     E  +  L +L    +     ++++ NK DL   
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGA 115

Query: 134 CAVS--TEDAKAFAERENTFFME-TSALESMNVENAFTEVLTQ 173
              S   E     + +   + ++  SA+    ++     ++ Q
Sbjct: 116 LTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 56.8 bits (137), Expect = 4e-10
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 34/176 (19%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-----EDKIVKAQIWDT 69
           KV+++GDSGVGKS+L+    +N+       T+G     R         E+K    ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 70  AGQ----ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL-------------- 111
            G     E  ++  + +Y    G + V+D+T   + +N+ RW  E               
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 112 -----RGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN 162
                     + + ++++G K D         E  + +      F  E    E +N
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQIP------EAKRNWVLTRTAFLSEDFNAEEIN 171

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV---EFATRSIRVEDKIVKAQIWDTA 70
           YKV+++G    GK+ +L +F   E  + +  TIG    E   ++IR         +WD  
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGE-VVHTSPTIGSNVEEIVYKNIRFL-------MWDIG 67

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKAD 129
           GQE  R+  + YY      +LV D T        +  L ++  H D    V++++ NK D
Sbjct: 68  GQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQD 127

Query: 130 LR 131
           L+
Sbjct: 128 LK 129

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+VL+GD   GK+ +L    ++ +      T+  E  T  +  E++ V+  +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLR 131
           Y  +    Y  +   LL +D++R   F++ +++W  E+  +   +  I+L+G K DLR
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKTDLR 130

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 53.5 bits (128), Expect = 7e-09
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 7/120 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD+  GK+ LL  F ++ +  ES      E  T S  ++   ++  +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYP-ESYVPTVFENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS---NIVIMLVGNKADLR 131
           Y  +    Y  +   L+ +D++R  T ++V   LK+ +G T     N  ++LVG K D+R
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSV---LKKWQGETQEFCPNAKLVLVGCKLDMR 118

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 10/153 (6%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75
           + L+G    GK+ L++     +FS ++  T+G  F  R +   +  +K  +WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 76  RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV-GNKADLRHLC 134
           R++   Y RG    + V D       E  +  L +L        + +LV GNK DL    
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117

Query: 135 AV----STEDAKAFAERENTFFMETSALESMNV 163
           +V       + K+  +RE + +   SA E  N+
Sbjct: 118 SVDELIEQMNLKSITDREVSCYS-ISAKEKTNI 149

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 37/177 (20%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE-----FATRSIRV---EDKIVKAQIW 67
           +V+ G   VGKS+L+++ TR +           E     F T+S+ V   + K ++ Q+ 
Sbjct: 3   LVIAGYPNVGKSSLVNKLTRAK----------PEVAPYPFTTKSLFVGHFDYKYLRWQVI 52

Query: 68  DTAG------QER----YRAITS-AYYRGAVGALLVYDVTRH--VTFENVERWLKELRGH 114
           DT G      +ER     +AIT+ A+ R AV  L   D +     + E      KE++  
Sbjct: 53  DTPGILDRPLEERNTIEMQAITALAHLRAAV--LFFIDPSETCGYSIEEQLSLFKEIKPL 110

Query: 115 TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171
            +  ++++L  NK DL     +S  + +   E+E    ++ S L    V+    +  
Sbjct: 111 FNKPVIVVL--NKIDLLTEEDLS--EIEKELEKEGEEVIKISTLTEEGVDELKNKAC 163

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 25/141 (17%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-----EDKIVKA----- 64
           +V+++GDSGVGKS+L+    +         TIG     + I           +K      
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 65  ---QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL--RGHTDS-- 117
              ++WD +G ERY+   S +Y    G + V+D+++  T  ++++W  E+   G   +  
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPL 142

Query: 118 --------NIVIMLVGNKADL 130
                    +  +++GNKAD+
Sbjct: 143 GSGGPGGLPVPYIVIGNKADI 163

Length = 334

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKS--------TIGVEFATRSIRVEDKIVKAQIW 67
           V+++G    GK+  L + T+ +FS   K         T+G+   T  I V    +    W
Sbjct: 2   VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGT--IEVGKARLM--FW 56

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGN 126
           D  GQE  R++   YY  + G + V D T    F   +   +++  +     + ++++ N
Sbjct: 57  DLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLAN 116

Query: 127 KADLRHLCAVST-----EDAKAFAERENTFFMETSALESMNVENA 166
           K DL    +V+      +D  A   R +      SALE   VE  
Sbjct: 117 KQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 47.6 bits (113), Expect = 5e-07
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E S+ +  TIG    T    V  K +   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGE-SVTTIPTIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
            R +   YY    G + V D   R    E  E   + L      + VI++  NK DL
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 25/138 (18%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD----- 68
            +V ++G  GVGK+ ++ +F   EF  E   T        ++ +  ++    I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 69  ----TAGQE----RYRAI--TSAYYRGAVGALLVYDVTRHVTFENVE---RWLKELRGHT 115
               TAGQE    R+R +  + A+       +LVYD+    +F  V+   + + E R   
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSRAF-------ILVYDICSPDSFHYVKLLRQQILETRPAG 113

Query: 116 DSNIVIMLVGNKADLRHL 133
           +    I++VGNK D +  
Sbjct: 114 NKEPPIVVVGNKRDQQRH 131

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 13/163 (7%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +V+L+G    GKS LL +    E  + +  T+G  F    +++E K +   +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAEL-VTTIPTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRHL 133
            R +   Y     G + V D +     +  ++ LK  L+      + ++L+ NK DL   
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG- 115

Query: 134 CAVSTED------AKAFAERENTFFMETSALESMNVENAFTEV 170
            A++ E+       K +    + +    SA+    +  AF ++
Sbjct: 116 -ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 47.2 bits (113), Expect = 6e-07
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E    +  TIG  F   +  V  K VK  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIV-TTIPTIG--FNVET--VTYKNVKFTVWDVGGQE 69

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLR 131
             R +   Y+      + V D       E  +  L  L    + ++  ++++ NK DL 
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLP 128

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 20/130 (15%)

Query: 15  KVVLIGDSGVGKSNLL------------SRFTRNEFSLESKSTIGVEFATRSIRVEDKIV 62
           K+V+IG  G GK+  +            +  +      +  +T+ ++F   SI +++   
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDED-T 68

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM 122
              ++ T GQER++ +     RGAVGA+++ D +R +TF   E     +   T  N + +
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE----IIDFLTSRNPIPV 124

Query: 123 LVG-NKADLR 131
           +V  NK DL 
Sbjct: 125 VVAINKQDLF 134

Length = 187

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    + S+ +  T+G    T    V  K VK  +WD  GQ++
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 65

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
            R +   YY G  G + V D       +   + L  +    +  + ++++  NK DL
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 8/127 (6%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +VV +G  G GK+ +L +  ++EF ++   TIG    T    VE K +K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF-MQPIPTIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHL 133
            R +   YY      + V D +           L +L    +  + ++++  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG- 114

Query: 134 CAVSTED 140
            A+S E+
Sbjct: 115 -ALSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 45.0 bits (106), Expect = 6e-06
 Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 38/191 (19%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKST--------------IGVEFATRSIRVE 58
             K V++GD+ VGK+ L+     N+   + +                +  E   RS  V 
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 59  DKI-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRGHTD 116
           D + V  ++WDT G +  +    AY R  V  LL + +    +  NV+  W  E+R    
Sbjct: 62  DGVSVSLRLWDTFG-DHDKDRRFAYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIRHFCP 119

Query: 117 SNIVIMLVGNKADLRHLC-------------------AVSTEDAKAFAERENTFFMETSA 157
              VI LVG K DLR+                      +  E  +A A+     + ETS 
Sbjct: 120 RVPVI-LVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSV 178

Query: 158 LESMNVENAFT 168
           +    V++ F 
Sbjct: 179 VTQFGVKDVFD 189

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 18/124 (14%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ--IWDTAG- 71
           +V L+G   VGKS L++  T  + ++ S         TR   +    +  Q  + DT G 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSD----YPGTTRDPILGVLGLGRQIILVDTPGL 56

Query: 72  -----QERYRAITSAY---YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIML 123
                + +     + +    R A   LLV D +  +T E+ E  L+EL       I+++L
Sbjct: 57  IEGASEGKGVEGFNRFLEAIREADLILLVVDASEGLT-EDDEEILEELEKLPKKPIILVL 115

Query: 124 VGNK 127
             NK
Sbjct: 116 --NK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 18/150 (12%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    VE K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRH----VTFENVERWLK--ELRGHTDSNIVIMLVGNKA 128
            R +   Y++   G + V D           E ++R L   ELR     + V+++  NK 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELR-----DAVLLVFANKQ 111

Query: 129 DLRHLCAVS--TEDAKAFAERENTFFMETS 156
           DL +  + +  T+     + R   ++++ +
Sbjct: 112 DLPNAMSAAEVTDKLGLHSLRNRNWYIQAT 141

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 14/123 (11%)

Query: 16  VVLIGDSGVGKSNLLSRF-TRNEFSLESKSTIG--VE-FATRSIRVEDKIVKAQIWDTAG 71
           ++++G    GK+ ++++    N  S     T+G  VE F   +       +    +D +G
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGN-------LSFTAFDMSG 54

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD---SNIVIMLVGNKA 128
           Q +YR +   YY+   G + V D +  +     +  L+ L  H D     I I+   NK 
Sbjct: 55  QGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKM 114

Query: 129 DLR 131
           DL 
Sbjct: 115 DLP 117

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    VE K +K  +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEV-VTTIPTIGFNVET----VEYKNLKFTMWDVGGQDK 73

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
            R +   YY+   G + V D        +    L+ +    +  + V+++  NK DL
Sbjct: 74  LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 40/182 (21%), Positives = 63/182 (34%), Gaps = 39/182 (21%)

Query: 15  KVVL---IGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRVEDKIVKAQIWDTA 70
            V L   +G  G GKS LL  F    FS  + S TI   +A  ++ V             
Sbjct: 3   NVFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVP------------ 50

Query: 71  GQERY---RAITSAYYRGAVG---------ALLVYDVTRHVTFENVERWLKELRGHTDSN 118
           GQE+Y   R +        +          A LVYD +   +F       K  +      
Sbjct: 51  GQEKYLILREVGEDEEAILLNDAELAACDVACLVYDSSDPNSFSYCAEVYK--KYFMLGE 108

Query: 119 IVIMLVGNKADL---RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           I  + V  KADL   +    V  ++   F  +     +      S  + ++  E+ T++ 
Sbjct: 109 IPCLFVAAKADLDEQQQRAEVQPDE---FCRK---LGLPPPLHFSSRLGDSSNELFTKLA 162

Query: 176 HV 177
             
Sbjct: 163 TA 164

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    VE K +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73

Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
            R +   Y++   G + V D   R    E  +   + L      + V+++  NK DL
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130

Length = 181

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 44/170 (25%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFA--TRSIRVEDKI----VKAQIWD 68
           KVV+ G   VGKS+LL+     + ++ S      + A  TR + +E++I    +  ++ D
Sbjct: 5   KVVIAGKPNVGKSSLLNALAGRDRAIVS------DIAGTTRDV-IEEEIDLGGIPVRLID 57

Query: 69  TAG------------QER-YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHT 115
           TAG             ER   AI  A        LLV D +  +  E++E          
Sbjct: 58  TAGLRETEDEIEKIGIERAREAIEEADLV-----LLVVDASEGLDEEDLEILEL------ 106

Query: 116 DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165
            +   +++V NK+DL         DA+  +E      +  SA     ++ 
Sbjct: 107 PAKKPVIVVLNKSDL-------LSDAEGISELNGKPIIAISAKTGEGIDE 149

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 36/178 (20%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLES--KSTIGVEFATRSIRVEDKI----VKAQIWD 68
           KVV+IG   VGKS+LL+     + ++ +    T      TR + +E+ I    +  ++ D
Sbjct: 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT------TRDV-IEEDINLNGIPVRLVD 271

Query: 69  TAGQ-------ERY---RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN 118
           TAG        ER    RA  +     A   L V D ++ +  E+       L       
Sbjct: 272 TAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLDKED-----LALIELLPKK 324

Query: 119 IVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
             I++V NKADL     VS  + ++         +  SA     ++ A  E + Q++ 
Sbjct: 325 KPIIVVLNKADL-----VSKIELESEKLANGDAIISISAKTGEGLD-ALREAIKQLFG 376

Length = 454

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.98
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.98
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
PTZ00099	176	rab6; Provisional	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
PLN00023	334	GTP-binding protein; Provisional	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.91
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.91
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
PRK15494	339	era GTPase Era; Provisional	99.9
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.9
PRK12296	500	obgE GTPase CgtA; Reviewed	99.9
PRK11058	426	GTPase HflX; Provisional	99.89
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.88
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.87
PRK00089	292	era GTPase Era; Reviewed	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.87
COG1159	298	Era GTPase [General function prediction only]	99.87
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.85
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.85
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
COG2229	187	Predicted GTPase [General function prediction only	99.84
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.83
PRK10218	607	GTP-binding protein; Provisional	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.82
PRK12317	425	elongation factor 1-alpha; Reviewed	99.82
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
COG2262	411	HflX GTPases [General function prediction only]	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.81
COG0218	200	Predicted GTPase [General function prediction only	99.81
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.81
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.81
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.8
PRK04004	586	translation initiation factor IF-2; Validated	99.8
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.8
COG0486	454	ThdF Predicted GTPase [General function prediction	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.79
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.79
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.79
PRK12736	394	elongation factor Tu; Reviewed	99.79
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.77
PRK12735	396	elongation factor Tu; Reviewed	99.77
CHL00071	409	tufA elongation factor Tu	99.76
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.76
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.76
COG1084	346	Predicted GTPase [General function prediction only	99.76
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.75
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.75
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.75
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.74
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.74
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.73
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.73
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.72
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.72
PLN03126	478	Elongation factor Tu; Provisional	99.72
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.71
COG0536	369	Obg Predicted GTPase [General function prediction	99.71
COG1163	365	DRG Predicted GTPase [General function prediction	99.71
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.71
PRK00049	396	elongation factor Tu; Reviewed	99.71
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.7
PRK13351	687	elongation factor G; Reviewed	99.7
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.69
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.69
PLN00043	447	elongation factor 1-alpha; Provisional	99.69
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.69
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.69
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.69
PLN03127	447	Elongation factor Tu; Provisional	99.68
COG3596	296	Predicted GTPase [General function prediction only	99.68
PTZ00141	446	elongation factor 1- alpha; Provisional	99.67
KOG1145	683	consensus Mitochondrial translation initiation fac	99.67
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.67
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.66
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.65
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.64
PRK12739	691	elongation factor G; Reviewed	99.64
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.63
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.63
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.62
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.62
PRK09866	741	hypothetical protein; Provisional	99.61
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.61
PRK09602	396	translation-associated GTPase; Reviewed	99.6
PRK00007	693	elongation factor G; Reviewed	99.59
PRK12740	668	elongation factor G; Reviewed	99.58
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.56
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.54
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.53
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.51
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.51
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.5
KOG0090	238	consensus Signal recognition particle receptor, be	99.5
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.5
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.49
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.49
PTZ00258	390	GTP-binding protein; Provisional	99.49
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.47
PRK14845	1049	translation initiation factor IF-2; Provisional	99.47
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.47
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.46
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.46
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.45
PRK13768	253	GTPase; Provisional	99.44
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.44
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.44
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.43
PRK07560	731	elongation factor EF-2; Reviewed	99.42
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.42
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.41
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.4
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.4
PRK09601	364	GTP-binding protein YchF; Reviewed	99.39
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.39
PTZ00416	836	elongation factor 2; Provisional	99.39
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.39
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.37
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.37
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.36
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.36
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.36
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.35
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.35
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.31
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.3
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.29
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.28
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.28
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.28
KOG0410	410	consensus Predicted GTP binding protein [General f	99.26
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.24
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.23
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.22
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.22
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.21
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.21
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.18
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.17
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.16
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.15
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.13
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.13
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.12
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.11
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.1
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.09
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.05
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.04
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.01
PRK12289	352	GTPase RsgA; Reviewed	98.94
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.93
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.92
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.91
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.91
PRK00098	298	GTPase RsgA; Reviewed	98.88
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.87
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.86
PRK12288	347	GTPase RsgA; Reviewed	98.86
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.85
KOG2486	320	consensus Predicted GTPase [General function predi	98.82
KOG0460	449	consensus Mitochondrial translation elongation fac	98.8
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.8
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.75
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.74
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.73
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.72
KOG1143	591	consensus Predicted translation elongation factor	98.72
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.71
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.71
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.7
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.7
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.69
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.69
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.68
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.68
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.68
COG1161	322	Predicted GTPases [General function prediction onl	98.66
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.65
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.63
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.61
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.58
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.58
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.58
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.57
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.57
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.53
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.51
PRK10416	318	signal recognition particle-docking protein FtsY;	98.49
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.48
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.47
cd03112	158	CobW_like The function of this protein family is u	98.47
PRK12288	347	GTPase RsgA; Reviewed	98.44
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.44
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.44
PRK14974	336	cell division protein FtsY; Provisional	98.43
PRK01889	356	GTPase RsgA; Reviewed	98.39
PRK13796	365	GTPase YqeH; Provisional	98.38
PRK12289	352	GTPase RsgA; Reviewed	98.38
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.36
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.36
PRK13796	365	GTPase YqeH; Provisional	98.35
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.35
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.34
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.33
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.32
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.31
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.27
COG1162	301	Predicted GTPases [General function prediction onl	98.26
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.2
PRK13695	174	putative NTPase; Provisional	98.18
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.18
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.17
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.15
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.15
COG3523	1188	IcmF Type VI protein secretion system component Va	98.14
KOG2484	435	consensus GTPase [General function prediction only	98.13
COG1162	301	Predicted GTPases [General function prediction onl	98.11
PRK00098	298	GTPase RsgA; Reviewed	98.1
cd03114	148	ArgK-like The function of this protein family is u	98.09
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.08
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.06
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.99
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.99
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.99
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.98
COG0523	323	Putative GTPases (G3E family) [General function pr	97.98
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.97
PRK10867	433	signal recognition particle protein; Provisional	97.96
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.93
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.9
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.9
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.87
TIGR00959	428	ffh signal recognition particle protein. This mode	97.87
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.86
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.85
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.83
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.81
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.77
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.77
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.76
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.76
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.71
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.71
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.65
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.65
cd03111	106	CpaE_like This protein family consists of proteins	97.62
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.62
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.61
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.6
PF00004	132	AAA: ATPase family associated with various cellula	97.57
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.55
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.54
PRK08118	167	topology modulation protein; Reviewed	97.51
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.51
PRK07261	171	topology modulation protein; Provisional	97.49
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.48
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.47
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.45
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.41
cd03110	179	Fer4_NifH_child This protein family's function is	97.41
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.4
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.4
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.35
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.35
cd02036	179	MinD Bacterial cell division requires the formatio	97.31
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.31
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.31
PRK14738	206	gmk guanylate kinase; Provisional	97.29
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.26
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.26
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.26
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.25
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.23
PRK10646	153	ADP-binding protein; Provisional	97.23
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.22
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.22
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.22
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.21
KOG1533	290	consensus Predicted GTPase [General function predi	97.21
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.2
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.18
PRK06217	183	hypothetical protein; Validated	97.16
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.16
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.15
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.15
PRK01889	356	GTPase RsgA; Reviewed	97.14
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.13
smart00382	148	AAA ATPases associated with a variety of cellular	97.13
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.1
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.1
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.08
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.07
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.06
COG0802	149	Predicted ATPase or kinase [General function predi	97.05
PRK04195	482	replication factor C large subunit; Provisional	97.05
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.05
PRK14530	215	adenylate kinase; Provisional	97.05
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.03
PRK05480	209	uridine/cytidine kinase; Provisional	97.02
PRK03839	180	putative kinase; Provisional	97.02
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.02
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.01
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.01
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.01
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.99
PRK13949	169	shikimate kinase; Provisional	96.99
PRK14737	186	gmk guanylate kinase; Provisional	96.98
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.97
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.94
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.94
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.93
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.93
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	96.92
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.91
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.91
COG3845	501	ABC-type uncharacterized transport systems, ATPase	96.91

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-42  Score=243.37  Aligned_cols=180  Identities=47%  Similarity=0.776  Sum_probs=171.7

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      ..+.+++.+||+++|.+|+|||.|+.||....|...+..|.|.++..+.+.++++.+++++|||+||++|+.+..+|+++
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVE  164 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~  164 (217)
                      ++++|+|||+++..||..+..|+..+.++...++|.++||||+|+.+.+.++.++++.|+..++++ ++++||+++.+++
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            999999999999999999999999999999889999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCC
Q 027894          165 NAFTEVLTQIYHVVSRKALDI  185 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~~~~~~  185 (217)
                      ++|..|...+.+.........
T Consensus       162 ~~F~~la~~lk~~~~~~~~~~  182 (205)
T KOG0084|consen  162 DAFLTLAKELKQRKGLHVKWS  182 (205)
T ss_pred             HHHHHHHHHHHHhcccCCCCC
Confidence            999999999988876654444

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-40  Score=236.03  Aligned_cols=210  Identities=73%  Similarity=1.106  Sum_probs=190.5

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +...++.+||+++|.+++|||-|+.+|..++|...+.+|.+.++....+.++++.++.++|||+||++|+....+|++.+
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA   87 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA   87 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      .++++|||++.+.+|+.+.+|+.+++.+...++++++|+||+||.+.+.+..++++.++++.+..++++||.+..|+++.
T Consensus        88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a  167 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA  167 (222)
T ss_pred             ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence            99999999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCC---CCCCCCceeeecCCC--CccCccccCccC
Q 027894          167 FTEVLTQIYHVVSRKALDIGGDP---AALPKGQTINVGGKD--DVSAVKKVGCCN  216 (217)
Q Consensus       167 ~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~c~~  216 (217)
                      |..++..++....++.......+   ....+|.++++....  ..+..++..||+
T Consensus       168 F~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~  222 (222)
T KOG0087|consen  168 FERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS  222 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence            99999999999998876655442   233456666665333  235566778885

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-40  Score=233.22  Aligned_cols=197  Identities=41%  Similarity=0.706  Sum_probs=173.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|..++|||||+-||..+.|.....+|+|..+....+.+++..+++.+|||+|+++|.++.+.|+++++++|+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            46999999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |||+++.+||..++.|...+.....+++.+.+||||+|+.+.+++..+++..+++..+..|+++||+++.|++++|..|.
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia  163 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA  163 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence            99999999999999999999998877888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccCCCCCCCCCCCCceeeecCCCCccCccccCccC
Q 027894          172 TQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCN  216 (217)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  216 (217)
                      +.+.........    ..+..+  ...++.+.+  ..+.+++||.
T Consensus       164 ~~lp~~~~~~~~----~~~~~~--~g~~l~~~~--~~~~~~~~C~  200 (200)
T KOG0092|consen  164 EKLPCSDPQERQ----GLPNRR--QGVDLNSNQ--EPARPSGCCA  200 (200)
T ss_pred             HhccCccccccc----cccccc--cceecccCC--CCcCcCCcCC
Confidence            999876654432    101111  233344332  3456778884

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2e-40  Score=224.68  Aligned_cols=172  Identities=45%  Similarity=0.731  Sum_probs=162.9

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ++..+..+||+++|.+|+|||||+.+|..+.|.+....|.|.++.++.+.+++..+++.+|||+|+++|+.+...|++.+
T Consensus         5 ss~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRga   84 (209)
T KOG0080|consen    5 SSGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGA   84 (209)
T ss_pred             ccCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccC
Confidence            35677889999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      .++|+|||++.+++|..+..|++++..+.. +++..++|+||+|...++.++.++...|++++++.|+++||++.+++..
T Consensus        85 qGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~  164 (209)
T KOG0080|consen   85 QGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC  164 (209)
T ss_pred             ceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence            999999999999999999999999998875 6777889999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027894          166 AFTEVLTQIYHVV  178 (217)
Q Consensus       166 ~~~~i~~~~~~~~  178 (217)
                      +|+.+++.+++-.
T Consensus       165 ~FeelveKIi~tp  177 (209)
T KOG0080|consen  165 CFEELVEKIIETP  177 (209)
T ss_pred             HHHHHHHHHhcCc
Confidence            9999999998543

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-39  Score=229.43  Aligned_cols=176  Identities=48%  Similarity=0.824  Sum_probs=169.2

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      +.++.+..+||+++|.+|||||+|+.+|..+.+...+..|.|+++....+..++..+.+++|||+||+++..+...|++.
T Consensus         5 ~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg   84 (207)
T KOG0078|consen    5 AKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG   84 (207)
T ss_pred             ccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      |+++++|||+++..||+.+..|+..+..+...++|.++||||+|+...+++..+.++.+|.++|++|+|+||++|.||++
T Consensus        85 A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e  164 (207)
T KOG0078|consen   85 AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE  164 (207)
T ss_pred             cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence            99999999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcc
Q 027894          166 AFTEVLTQIYHVVSRK  181 (217)
Q Consensus       166 ~~~~i~~~~~~~~~~~  181 (217)
                      .|..+...+....++.
T Consensus       165 aF~~La~~i~~k~~~~  180 (207)
T KOG0078|consen  165 AFLSLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHHHHhhcchh
Confidence            9999999999866554

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-39  Score=225.60  Aligned_cols=181  Identities=48%  Similarity=0.816  Sum_probs=171.0

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .+.+.+|++++|..|+|||+|+.+|+...|.+.+..|.|+++....+.++++.+++++|||.|++.+++....|++.+.+
T Consensus         2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G   81 (216)
T KOG0098|consen    2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG   81 (216)
T ss_pred             CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      +|+|||+++++||..+..|+..+..+...+..+++++||+|+...++++.++...|+++++..+.++||++++|+.|.|.
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            99999999999999999999999998878999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCC
Q 027894          169 EVLTQIYHVVSRKALDIGGDP  189 (217)
Q Consensus       169 ~i~~~~~~~~~~~~~~~~~~~  189 (217)
                      .+...+++-...+-.+.--++
T Consensus       162 nta~~Iy~~~q~g~~~~~~~~  182 (216)
T KOG0098|consen  162 NTAKEIYRKIQDGVFDDINES  182 (216)
T ss_pred             HHHHHHHHHHHhccccccccc
Confidence            999999988877755544443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-39  Score=227.16  Aligned_cols=168  Identities=38%  Similarity=0.684  Sum_probs=159.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|..++||||||.+|..+.|...+..|+|+++....+.+.+.++++++|||+||++|+.+.+.|++++.++++
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            34999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCC-CCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      |||+++..||+....|++.+...++. ++.+++||||.||.+.+++..++....++++++.|.++||+.|+||+++|..|
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI  180 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI  180 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence            99999999999999999999988875 58889999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhh
Q 027894          171 LTQIYHVVS  179 (217)
Q Consensus       171 ~~~~~~~~~  179 (217)
                      ...++....
T Consensus       181 aa~l~~~~~  189 (221)
T KOG0094|consen  181 AAALPGMEV  189 (221)
T ss_pred             HHhccCccc
Confidence            777776554

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=4.9e-38  Score=235.04  Aligned_cols=208  Identities=68%  Similarity=1.064  Sum_probs=174.8

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      ...+.++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.
T Consensus         5 ~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   84 (216)
T PLN03110          5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG   84 (216)
T ss_pred             cccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence            34456688999999999999999999999999887788888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      ++++++|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+++
T Consensus        85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~  164 (216)
T PLN03110         85 AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEK  164 (216)
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999999998877666899999999999987777888889999998999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCC---CCCCCceeeecCCCCccCccccCccC
Q 027894          166 AFTEVLTQIYHVVSRKALDIGGDPA---ALPKGQTINVGGKDDVSAVKKVGCCN  216 (217)
Q Consensus       166 ~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~c~~  216 (217)
                      +|++++..+.+.............+   .-++++++.+  .+. ...|+.+||+
T Consensus       165 lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~c~  215 (216)
T PLN03110        165 AFQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINV--ADT-SGNNKRGCCS  215 (216)
T ss_pred             HHHHHHHHHHHHhhccccccccCcccccCcCcCCcccc--cCc-cCCCCCCCcC
Confidence            9999999998876554443322111   1134455555  232 3456668986

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=3.3e-37  Score=225.38  Aligned_cols=169  Identities=37%  Similarity=0.677  Sum_probs=155.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..+||+++|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            55779999999999999999999999988877778888888878888888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++|||++++.||+.+..|+..+.... ++.|++||+||.|+...+.++.++++.++...+++|+++||++|.|++++|++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999997765 68999999999999877788999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027894          170 VLTQIYHVVS  179 (217)
Q Consensus       170 i~~~~~~~~~  179 (217)
                      +.+.+.....
T Consensus       162 l~~~i~~~~~  171 (189)
T cd04121         162 LARIVLMRHG  171 (189)
T ss_pred             HHHHHHHhcC
Confidence            9998876554

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=2.9e-38  Score=218.95  Aligned_cols=172  Identities=40%  Similarity=0.679  Sum_probs=159.5

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....+||+++|.+|+|||||++++.+..|...+..|++.++..+.+.+++..+.+++|||+|+++|.++.-.+++.+|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            45677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCC----CCCcEEEEEeCCCCCC--cccCCHHHHHHHHHHc-CCcEEEeccCCCC
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADLRH--LCAVSTEDAKAFAERE-NTFFMETSALESM  161 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~  161 (217)
                      .++|||+.++.||+.+..|..++.....    ..-|+||+|||+|+..  .+.++...++.|++.. ++|||++||+...
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999999887664    4578999999999965  3789999999999876 4899999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhc
Q 027894          162 NVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       162 ~v~~~~~~i~~~~~~~~~~  180 (217)
                      ||.+.|+.+...+++....
T Consensus       165 NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cHHHHHHHHHHHHHhccch
Confidence            9999999999999877654

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=4.7e-37  Score=227.69  Aligned_cols=195  Identities=37%  Similarity=0.620  Sum_probs=162.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +||+++|.+|||||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888888888877777777 7789999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccC----CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHT----DSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMNVENAF  167 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~  167 (217)
                      ||++++.+|+.+..|+..+....    ..+.|+++|+||+|+...+.+..+++.+++...+ ..++++||+++.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999988876432    2578999999999997666788889999999988 689999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCceeeecCCCCccCccccCcc
Q 027894          168 TEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCC  215 (217)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  215 (217)
                      ++|.+.+.+.........++.       +.-.+...+.+...|..+||
T Consensus       161 ~~l~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         161 RFLVKNILANDKNLQQAETPE-------DGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHhchhhHhhcCCC-------cccccccccceeccccCCCC
Confidence            999999987754443333221       11222333445555666898

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.1e-36  Score=224.58  Aligned_cols=165  Identities=38%  Similarity=0.715  Sum_probs=152.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +.|+++|..|||||||+++|..+.+...+.+|.+.++....+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999998888889888888888889998999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-NTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      |++++.||+.+..|+..+......+.|+++|+||+|+...+++..++..++++.. ++.|+++||++|.|++++|+++.+
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887766578999999999999877888888899998875 789999999999999999999999


Q ss_pred             HHHHHh
Q 027894          173 QIYHVV  178 (217)
Q Consensus       173 ~~~~~~  178 (217)
                      .+....
T Consensus       161 ~~~~~~  166 (202)
T cd04120         161 DILKKM  166 (202)
T ss_pred             HHHHhC
Confidence            887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.9e-36  Score=224.06  Aligned_cols=197  Identities=44%  Similarity=0.682  Sum_probs=165.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..++|+++|++|+|||||+++|.+..+...+.+|.+.++....+.+.+..+.+.+||+||++.+...+..++++++++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            35689999999999999999999999998877888888888878888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++|||++++.+|+.+..|+..+.... ...|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|++
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            99999999999999999999987655 67899999999999876677788888899888999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCceeeecCCCCccCccccCcc
Q 027894          170 VLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCC  215 (217)
Q Consensus       170 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  215 (217)
                      |...+............       +.++++....+ .+.+|+.+||
T Consensus       162 l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~  199 (199)
T cd04110         162 ITELVLRAKKDNLAKQQ-------QQQQNDVVKLP-KNSKRKKRCC  199 (199)
T ss_pred             HHHHHHHhhhccCcccc-------cCCccccCccc-hhccccccCC
Confidence            99999876544322111       12333333333 3335666887

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=6e-38  Score=209.83  Aligned_cols=170  Identities=49%  Similarity=0.774  Sum_probs=162.8

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ...+..++.+++|.+|+|||+|+.+|....|+.+|..|.|.++...++.+++..+++++|||+|++.|+.+...|++..+
T Consensus         3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      ++++|||+++.+||....+|+..+...+ +..|-++|+||.|.++.+.+..++++.|+...++.+|++|++.++|+++.|
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence            9999999999999999999999999888 689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027894          168 TEVLTQIYHVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      .-|.+.+....
T Consensus       162 ~cit~qvl~~k  172 (198)
T KOG0079|consen  162 HCITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99999888777

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-37  Score=206.14  Aligned_cols=175  Identities=39%  Similarity=0.740  Sum_probs=166.5

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      .++.+++.+|++++|...+|||||+.++.+..|.+...+|.|+++..+++.-..+.+++++|||.|++.|+.+...+++.
T Consensus        14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg   93 (193)
T KOG0093|consen   14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG   93 (193)
T ss_pred             ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence            45678889999999999999999999999999999999999999999998778889999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      ++++|++||+++.+||..++.|...+......+.|+|+|+||||+..++.++.+..+.++.+.|+.||++||+.+.|+++
T Consensus        94 amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~  173 (193)
T KOG0093|consen   94 AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQ  173 (193)
T ss_pred             cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence            99999999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 027894          166 AFTEVLTQIYHVVSR  180 (217)
Q Consensus       166 ~~~~i~~~~~~~~~~  180 (217)
                      +|+.++..+-+.+++
T Consensus       174 ~Fe~lv~~Ic~kmse  188 (193)
T KOG0093|consen  174 VFERLVDIICDKMSE  188 (193)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999988876654

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5e-37  Score=206.64  Aligned_cols=190  Identities=45%  Similarity=0.739  Sum_probs=179.9

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ++.+++.+|++++|+.|+|||.|+.+|+...+......|.+.++....+.+.++.+++++|||+|+++|++..+.|++.+
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      .+.++|||++++++|+.+..|+..+.....+++-+++++||.|+.++++++..++..|+.+..+.+.++|+++|+|++|.
T Consensus        83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA  162 (214)
T ss_pred             cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence            99999999999999999999999999888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCc
Q 027894          167 FTEVLTQIYHVVSRKALDIGGDPAALPKGQ  196 (217)
Q Consensus       167 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (217)
                      |-.....++...+-++++++.-.+.+.-|+
T Consensus       163 Fl~c~~tIl~kIE~GElDPer~gsGIQYGd  192 (214)
T KOG0086|consen  163 FLKCARTILNKIESGELDPERMGSGIQYGD  192 (214)
T ss_pred             HHHHHHHHHHHHhhcCCCHHHcccccccch
Confidence            999999999999988888877666666554

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=8.1e-36  Score=218.95  Aligned_cols=168  Identities=48%  Similarity=0.792  Sum_probs=152.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998777788888887777888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.+|+.+..|+..+........|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887665678999999999998777788888888988889999999999999999999999999


Q ss_pred             HHHHhhcc
Q 027894          174 IYHVVSRK  181 (217)
Q Consensus       174 ~~~~~~~~  181 (217)
                      +.......
T Consensus       161 ~~~~~~~~  168 (188)
T cd04125         161 IIKRLEEQ  168 (188)
T ss_pred             HHHHhhcC
Confidence            98765443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.1e-37  Score=204.88  Aligned_cols=206  Identities=37%  Similarity=0.694  Sum_probs=179.9

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      +++.+.+||+++|..|+|||.|+++|..+.|++....|.+.++..+++.+++..+++++|||+|+++|+++...|++.++
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      ++|+|||++...||+-+..|+..+..+...++.-|+|+||+|+.+++++.....++|++.....|+++||++.++++.+|
T Consensus        82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf  161 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF  161 (213)
T ss_pred             eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence            99999999999999999999999999988888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCC---CCCCCCCceeeecCCCCccCccccCccC
Q 027894          168 TEVLTQIYHVVSRKALDIGGD---PAALPKGQTINVGGKDDVSAVKKVGCCN  216 (217)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~c~~  216 (217)
                      ..+.-.+.............+   +..-..|.+|.+.+..   ..+...||.
T Consensus       162 ~~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~a---qt~~~~cc~  210 (213)
T KOG0095|consen  162 LDLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYA---QTQLLTCCN  210 (213)
T ss_pred             HHHHHHHHHHHHhccchhhccccCccccCCCCcccchhHH---HHHHhcccc
Confidence            999888877665443322222   2222456777666442   244457774

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=2.2e-35  Score=221.12  Aligned_cols=176  Identities=24%  Similarity=0.431  Sum_probs=154.8

Q ss_pred             CccccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhH
Q 027894            1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus         1 ~~~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      |+.-+.+.+....+||+++|..|||||||+++|..+.|...+.+|.+..+. ..+.+++..+.+.+|||+|++.|..++.
T Consensus         1 ~~~~~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~   79 (232)
T cd04174           1 MKERRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRP   79 (232)
T ss_pred             CcccccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence            555555666668899999999999999999999999998888888876654 4577888999999999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHH
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAER  147 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~  147 (217)
                      .+++++|++++|||++++.||+.+ ..|+..+.... ++.|+++|+||+|+..            .+.++.+++.++++.
T Consensus        80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~  158 (232)
T cd04174          80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ  158 (232)
T ss_pred             HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence            999999999999999999999984 88999988765 5789999999999964            256889999999999


Q ss_pred             cCC-cEEEeccCCCC-CHHHHHHHHHHHHHHHh
Q 027894          148 ENT-FFMETSALESM-NVENAFTEVLTQIYHVV  178 (217)
Q Consensus       148 ~~~-~~~~~Sa~~~~-~v~~~~~~i~~~~~~~~  178 (217)
                      +++ .|+++||++++ |++++|..+...+.+..
T Consensus       159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~  191 (232)
T cd04174         159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLNKL  191 (232)
T ss_pred             cCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhc
Confidence            998 59999999998 89999999999887643

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=3.9e-35  Score=218.57  Aligned_cols=206  Identities=46%  Similarity=0.772  Sum_probs=171.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||+|++.+...+..+++.+|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            34679999999999999999999999988888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++|||++++.+++.+..|+..+........|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|++
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988877665568999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccc--CCCCCCCCCCCCceeeecCCCCccCccccCcc
Q 027894          170 VLTQIYHVVSRKAL--DIGGDPAALPKGQTINVGGKDDVSAVKKVGCC  215 (217)
Q Consensus       170 i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  215 (217)
                      +++.+++...+...  ..+.+-...|.|+--.....++-...|-||||
T Consensus       163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
T PLN03108        163 TAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC  210 (210)
T ss_pred             HHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence            99999876543333  22222333344433333344455557788998

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=2.4e-35  Score=216.90  Aligned_cols=165  Identities=45%  Similarity=0.748  Sum_probs=147.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +||+++|.+|||||||+++|....+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999998754 4567777777776777888889999999999999998889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      +|++++.+++.+..|+..+......+.|+++|+||+|+..++.+..++...++..++++|+++||+++.|++++|++|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988776568999999999999766677778888999889999999999999999999999999


Q ss_pred             HHHHHh
Q 027894          173 QIYHVV  178 (217)
Q Consensus       173 ~~~~~~  178 (217)
                      .+....
T Consensus       161 ~~~~~~  166 (191)
T cd04112         161 ELKHRK  166 (191)
T ss_pred             HHHHhc
Confidence            987664

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.3e-35  Score=212.39  Aligned_cols=164  Identities=51%  Similarity=0.857  Sum_probs=150.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+++.+|||||++.+...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999888888888888877788888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      ||++++.+|+.+..|+..+.....++.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887766577999999999999877778888999999999999999999999999999999998


Q ss_pred             HHHH
Q 027894          173 QIYH  176 (217)
Q Consensus       173 ~~~~  176 (217)
                      .+++
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            8764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.6e-35  Score=217.61  Aligned_cols=166  Identities=35%  Similarity=0.524  Sum_probs=145.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999988777777776554 3445577888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccCC---CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           95 VTRHVTFENVERWLKELRGHTD---SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      ++++.||+.+..|+..+.....   .+.|+++|+||+|+...+.+...+...++...+++++++||+++.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888866542   5789999999999987777888888888888899999999999999999999999


Q ss_pred             HHHHHHhhcc
Q 027894          172 TQIYHVVSRK  181 (217)
Q Consensus       172 ~~~~~~~~~~  181 (217)
                      +.+..++..+
T Consensus       160 ~~l~~~~~~~  169 (190)
T cd04144         160 RALRQQRQGG  169 (190)
T ss_pred             HHHHHhhccc
Confidence            9888766554

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.5e-36  Score=205.46  Aligned_cols=193  Identities=34%  Similarity=0.605  Sum_probs=176.1

Q ss_pred             CccccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhH
Q 027894            1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus         1 ~~~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      |+..++-....+.+||+++|.-=+|||||+-++..+.|......|....+..+.+.+.+....+.+|||+|+++|..+-+
T Consensus         1 ~~~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP   80 (218)
T KOG0088|consen    1 MMLETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP   80 (218)
T ss_pred             CCccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc
Confidence            44455566678899999999999999999999999999998888888888889999999999999999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      -|++..+++++|||++|.+||+.++.|...+....+..+-++||+||+|+.+++.++.+++..++..-|..|+++||+++
T Consensus        81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N  160 (218)
T KOG0088|consen   81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN  160 (218)
T ss_pred             eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence            99999999999999999999999999999999888888899999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 027894          161 MNVENAFTEVLTQIYHVVSRKALDIGGDPAALP  193 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  193 (217)
                      .|+.++|+.+....+++....+.+-.+.+..-|
T Consensus       161 ~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp  193 (218)
T KOG0088|consen  161 VGISELFESLTAKMIEHSSQRQRTRSPLSTQPP  193 (218)
T ss_pred             cCHHHHHHHHHHHHHHHhhhcccccCCcCCCCC
Confidence            999999999999999998777776655544434

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=2.7e-35  Score=219.52  Aligned_cols=165  Identities=35%  Similarity=0.554  Sum_probs=141.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++|..+.+.. ..++.+..+....+    ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999864 45666655544332    4578999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC-------------------cccCCHHHHHHHHHHcC-----
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH-------------------LCAVSTEDAKAFAEREN-----  149 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  149 (217)
                      |++++.||+.+..|+..+......+.|+++|+||+|+.+                   .+.+..+++..+++..+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888777765556799999999999965                   57788899999998876     


Q ss_pred             ---------CcEEEeccCCCCCHHHHHHHHHHHHHHHhhcccc
Q 027894          150 ---------TFFMETSALESMNVENAFTEVLTQIYHVVSRKAL  183 (217)
Q Consensus       150 ---------~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~  183 (217)
                               ++|+++||++|.|++++|+.+++.+.....+...
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~  198 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA  198 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence                     6899999999999999999999999877755544

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=5.4e-35  Score=218.70  Aligned_cols=165  Identities=32%  Similarity=0.526  Sum_probs=149.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC-eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +||+++|.+|||||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888889998888888887754 578999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCC---CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTD---SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ||++++.+|+.+..|+..+.....   .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|+|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999998876542   35689999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 027894          170 VLTQIYHVV  178 (217)
Q Consensus       170 i~~~~~~~~  178 (217)
                      +...+....
T Consensus       161 l~~~l~~~~  169 (215)
T cd04109         161 LAAELLGVD  169 (215)
T ss_pred             HHHHHHhcc
Confidence            999988653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=7.1e-35  Score=210.04  Aligned_cols=166  Identities=49%  Similarity=0.836  Sum_probs=151.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            45799999999999999999999999998888889888888788888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      +|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887665789999999999998766778888888999899999999999999999999999


Q ss_pred             HHHHHH
Q 027894          171 LTQIYH  176 (217)
Q Consensus       171 ~~~~~~  176 (217)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=6.1e-35  Score=212.38  Aligned_cols=163  Identities=28%  Similarity=0.504  Sum_probs=146.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|..|+|||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|+++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4568999999999999999999999999888888887555 456778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHcCC-cEEEec
Q 027894           91 LVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAERENT-FFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S  156 (217)
                      +|||++++.||+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.++.+++.++++..++ +|+++|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 78999988766 6799999999999864            246889999999999996 899999


Q ss_pred             cCCCCC-HHHHHHHHHHHHH
Q 027894          157 ALESMN-VENAFTEVLTQIY  175 (217)
Q Consensus       157 a~~~~~-v~~~~~~i~~~~~  175 (217)
                      |++++| ++++|+.+++.++
T Consensus       161 Ak~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         161 ALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHHh
Confidence            999998 9999999988643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=7.1e-35  Score=214.02  Aligned_cols=166  Identities=34%  Similarity=0.535  Sum_probs=146.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            358999999999999999999999988777777776555 4556678888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      |||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+.++|+++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999999988876543 578999999999997766777778888888888999999999999999999999


Q ss_pred             HHHHHHHh
Q 027894          171 LTQIYHVV  178 (217)
Q Consensus       171 ~~~~~~~~  178 (217)
                      .+.+....
T Consensus       163 ~~~l~~~~  170 (189)
T PTZ00369        163 VREIRKYL  170 (189)
T ss_pred             HHHHHHHh
Confidence            99887654

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=3e-34  Score=213.76  Aligned_cols=170  Identities=44%  Similarity=0.737  Sum_probs=153.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      .+||+++|.+|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+...+..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999988888888888887777766 4667899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      |||++++.||+.+..|+..+..... ...|+++|+||+|+.+.+.+..++...+++..+++++++||+++.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998876543 457889999999998777788888999999999999999999999999999999


Q ss_pred             HHHHHHHhhccc
Q 027894          171 LTQIYHVVSRKA  182 (217)
Q Consensus       171 ~~~~~~~~~~~~  182 (217)
                      .+.+.+...+++
T Consensus       162 ~~~~~~~~~~~~  173 (211)
T cd04111         162 TQEIYERIKRGE  173 (211)
T ss_pred             HHHHHHHhhcCC
Confidence            999988876665

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3e-35  Score=200.07  Aligned_cols=179  Identities=42%  Similarity=0.725  Sum_probs=163.5

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +-..+.+|.+++|.+-+|||+|++.|+.+.+..-+.||.|.++....+.+ ++..+++++|||+|+++|+++...|+++.
T Consensus         3 pif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrns   82 (213)
T KOG0091|consen    3 PIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNS   82 (213)
T ss_pred             cceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcc
Confidence            44678899999999999999999999999999999999999999887776 67889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCC-C-CCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTD-S-NIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      -++++|||+++..||+.++.|+........ + ++.+.+|++|+|+...++++.++++.+++.+++.|+++|++++.|++
T Consensus        83 vgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVe  162 (213)
T KOG0091|consen   83 VGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVE  162 (213)
T ss_pred             cceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence            999999999999999999999987765543 3 44467799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCC
Q 027894          165 NAFTEVLTQIYHVVSRKALDIG  186 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~~~~~~~  186 (217)
                      +.|..+.+.++....+++..+.
T Consensus       163 EAF~mlaqeIf~~i~qGeik~e  184 (213)
T KOG0091|consen  163 EAFDMLAQEIFQAIQQGEIKLE  184 (213)
T ss_pred             HHHHHHHHHHHHHHhcCceeee
Confidence            9999999999999988766544

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=9.3e-35  Score=210.22  Aligned_cols=160  Identities=31%  Similarity=0.555  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+.+|..+.+...+.+|.+..+ ...+.+++..+++.+|||+|++++..++..+++++|++++||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888888887655 445667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCcc----------cCCHHHHHHHHHHcCC-cEEEeccCCCC
Q 027894           94 DVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHLC----------AVSTEDAKAFAERENT-FFMETSALESM  161 (217)
Q Consensus        94 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  161 (217)
                      |++++.||+.+ ..|+..+.... .+.|+++|+||+|+.+.+          .+..+++..++...++ +|+++||+++.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999987665 579999999999996542          4788999999999998 59999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027894          162 NVENAFTEVLTQIY  175 (217)
Q Consensus       162 ~v~~~~~~i~~~~~  175 (217)
                      |++++|+.+++.+.
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.1e-34  Score=208.40  Aligned_cols=165  Identities=30%  Similarity=0.475  Sum_probs=146.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            37999999999999999999999999877777776444 44566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      ||++++.||+.+..|+..+..... .+.|+++|+||+|+.+.+.++.++...+++..+++|+++||+++.|++++|++++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999999988887776433 6799999999999987777888899999998999999999999999999999999


Q ss_pred             HHHHHHh
Q 027894          172 TQIYHVV  178 (217)
Q Consensus       172 ~~~~~~~  178 (217)
                      +.+....
T Consensus       161 ~~~~~~~  167 (172)
T cd04141         161 REIRRKE  167 (172)
T ss_pred             HHHHHhc
Confidence            9887643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=3.6e-34  Score=205.95  Aligned_cols=162  Identities=41%  Similarity=0.725  Sum_probs=147.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+|||+|++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888887777777767777899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||+++.|++++|+++...
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999877665678999999999998777777788888888889999999999999999999999887


Q ss_pred             HH
Q 027894          174 IY  175 (217)
Q Consensus       174 ~~  175 (217)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            64

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=3.9e-34  Score=205.97  Aligned_cols=163  Identities=49%  Similarity=0.795  Sum_probs=149.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999998888788888888888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      ||++++.++..+..|+..+......+.|+++|+||+|+.....+..++...++...+++++++||+++.|++++|++|.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999987766567999999999999776777888889999999999999999999999999999998


Q ss_pred             HHH
Q 027894          173 QIY  175 (217)
Q Consensus       173 ~~~  175 (217)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=3.6e-34  Score=208.80  Aligned_cols=167  Identities=41%  Similarity=0.700  Sum_probs=149.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC----------CeEEEEEEEeCCCchhhhhhhH
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE----------DKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      ++.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+.          +..+.+.+|||||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            467999999999999999999999999988888888887776666554          3568899999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE  159 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      .+++++|++++|||++++.||..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++...+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999998887653 25789999999999987777888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~~~~  177 (217)
                      +.|++++|++|.+.+++.
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.8e-34  Score=209.51  Aligned_cols=161  Identities=27%  Similarity=0.505  Sum_probs=143.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++++|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            37999999999999999999999999888888876655 35677888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHcCC-cEEEeccC
Q 027894           93 YDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAERENT-FFMETSAL  158 (217)
Q Consensus        93 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  158 (217)
                      ||++++.||+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..+++.++++..++ +|+++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 78999988766 6899999999999954            245888999999999997 79999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 027894          159 ESMN-VENAFTEVLTQIY  175 (217)
Q Consensus       159 ~~~~-v~~~~~~i~~~~~  175 (217)
                      +|++ ++++|..+++..+
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=5.3e-34  Score=205.68  Aligned_cols=166  Identities=52%  Similarity=0.863  Sum_probs=152.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ++.+||+++|.+|+|||||++++.+..+...+.++.+.++....+..++....+.+||+||++.+......+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            56799999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      +|+|++++.+++.+..|+..+.....++.|+++|+||.|+.....+..++...++...+++++++||++++|++++|.++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999877665789999999999998666778888889999899999999999999999999999


Q ss_pred             HHHHHH
Q 027894          171 LTQIYH  176 (217)
Q Consensus       171 ~~~~~~  176 (217)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.8e-34  Score=205.72  Aligned_cols=160  Identities=41%  Similarity=0.712  Sum_probs=147.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      ++|+++|++|+|||||+++|..+.+.+.+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888888888887778888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.||+.+..|+..+......+.|+++|+||.|+...+.+..++...+++..+++|+++||+++.|++++|++|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999998877655679999999999998777788889999999899999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=6e-34  Score=205.08  Aligned_cols=162  Identities=33%  Similarity=0.634  Sum_probs=148.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888899988888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCC-----CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTD-----SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      |++++.+++.+..|+..+.....     .+.|+++|+||+|+.+......++...++...+++++++||+++.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999998877653     4689999999999976567788888888888899999999999999999999


Q ss_pred             HHHHHHH
Q 027894          169 EVLTQIY  175 (217)
Q Consensus       169 ~i~~~~~  175 (217)
                      +|++.++
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=7.6e-34  Score=203.62  Aligned_cols=161  Identities=37%  Similarity=0.695  Sum_probs=153.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|+.|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+..+...+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999998998899999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894           95 VTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      ++++.||+.+..|+..+......+.|+++++||.|+.+.+.+..+++++++..++++|+++||+++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988866799999999999988889999999999999999999999999999999999999987


Q ss_pred             H
Q 027894          175 Y  175 (217)
Q Consensus       175 ~  175 (217)
                      +
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=6.1e-34  Score=209.25  Aligned_cols=162  Identities=30%  Similarity=0.537  Sum_probs=142.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|..|||||||+.+|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++++|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999999888888887554 34456788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcC-CcEEEeccC
Q 027894           93 YDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAEREN-TFFMETSAL  158 (217)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  158 (217)
                      ||++++.||+.+. .|+..+.... .+.|+++|+||.|+.+.            +.+..+++..++...+ ++|+++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999996 5888776654 57999999999999643            2356778899999888 589999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027894          159 ESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~~~~  176 (217)
                      +++|++++|+++.+.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999987753

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=8.2e-34  Score=204.06  Aligned_cols=163  Identities=79%  Similarity=1.184  Sum_probs=149.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            46899999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |||++++.+++.+..|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||+++.|++++|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999998877655799999999999987777788888888888899999999999999999999998


Q ss_pred             HHH
Q 027894          172 TQI  174 (217)
Q Consensus       172 ~~~  174 (217)
                      +.+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            875

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.7e-33  Score=209.96  Aligned_cols=163  Identities=24%  Similarity=0.453  Sum_probs=142.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+|+|.+|||||||+++|..+.++..+.+|.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999998888888876554 56678889999999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894           94 DVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSALE  159 (217)
Q Consensus        94 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      |++++.+|+.+ ..|...+.... ++.|++||+||+|+...            ..++.+++..++++.++ +|+++||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            99999999998 56776665544 68999999999999642            13678899999999995 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHh
Q 027894          160 SMN-VENAFTEVLTQIYHVV  178 (217)
Q Consensus       160 ~~~-v~~~~~~i~~~~~~~~  178 (217)
                      +++ ++++|+.++...+...
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         160 SERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhcc
Confidence            885 9999999999876533

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.2e-33  Score=203.22  Aligned_cols=163  Identities=48%  Similarity=0.797  Sum_probs=147.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ++.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            35699999999999999999999999888877788888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVENAFTE  169 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~  169 (217)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+...++...+++..++...+. .++++||++|.|++++|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999999876557899999999999987777788888888888775 6899999999999999999


Q ss_pred             HHHH
Q 027894          170 VLTQ  173 (217)
Q Consensus       170 i~~~  173 (217)
                      +.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            9875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=1.3e-33  Score=207.05  Aligned_cols=166  Identities=31%  Similarity=0.521  Sum_probs=141.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +||+++|.+|+|||||+++|.++.+...+.++.+..+... +... +..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999998877777766655443 4444 6778999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc----ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHH
Q 027894           93 YDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL----CAVSTEDAKAFAERENT-FFMETSALESMNVENA  166 (217)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~  166 (217)
                      ||++++.||+.+. .|+..+.... .+.|+++|+||+|+...    +.+..++..+++...++ +++++||+++.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999985 5887776544 67999999999998643    24667888899999888 8999999999999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 027894          167 FTEVLTQIYHVVSRK  181 (217)
Q Consensus       167 ~~~i~~~~~~~~~~~  181 (217)
                      |+.+.+.+.....+.
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999998666433

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.1e-33  Score=206.14  Aligned_cols=162  Identities=28%  Similarity=0.536  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|..|+|||||+++|..+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888899988888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC-----cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH-----LCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      |++++.|++.+..|+..+........| ++|+||+|+..     ......++..++++..+++++++||+++.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999988776544566 67899999852     111234567788888899999999999999999999


Q ss_pred             HHHHHHHH
Q 027894          169 EVLTQIYH  176 (217)
Q Consensus       169 ~i~~~~~~  176 (217)
                      ++.+.+++
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99998875

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2e-33  Score=210.43  Aligned_cols=166  Identities=30%  Similarity=0.514  Sum_probs=147.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   89 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence            37789999999999999999999999999888889998888887787788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++|||++++.+|+.+..|+..+.... .+.|+++|+||+|+.. +.+..++. .++...+++|+++||+++.|++++|++
T Consensus        90 ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~  166 (219)
T PLN03071         90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (219)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence            99999999999999999999988765 6799999999999864 33444444 677778899999999999999999999


Q ss_pred             HHHHHHHHh
Q 027894          170 VLTQIYHVV  178 (217)
Q Consensus       170 i~~~~~~~~  178 (217)
                      |.+.+.+..
T Consensus       167 l~~~~~~~~  175 (219)
T PLN03071        167 LARKLAGDP  175 (219)
T ss_pred             HHHHHHcCc
Confidence            999886543

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=4.6e-33  Score=205.15  Aligned_cols=164  Identities=35%  Similarity=0.624  Sum_probs=143.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +||+++|.+|+|||||+++|..+.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998864 5667777777777888899889999999999999998899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc----ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL----CAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      ||++++.+++.+..|+..+.... .+.|+++|+||+|+...    ..+..+++..++...+++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999998887654 57999999999998532    34556677888888889999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027894          169 EVLTQIYHVV  178 (217)
Q Consensus       169 ~i~~~~~~~~  178 (217)
                      ++.+.+.+..
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999987654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2.1e-33  Score=201.45  Aligned_cols=160  Identities=34%  Similarity=0.555  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777667665 344556677888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876543 67999999999999766667777788888888899999999999999999999987


Q ss_pred             HH
Q 027894          173 QI  174 (217)
Q Consensus       173 ~~  174 (217)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=205.38  Aligned_cols=173  Identities=45%  Similarity=0.702  Sum_probs=148.9

Q ss_pred             cCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc
Q 027894            5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus         5 ~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      .++......+||+++|.+|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus         6 ~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   84 (211)
T PLN03118          6 GQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYR   84 (211)
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh
Confidence            34566777899999999999999999999998874 45577777777777778888889999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHH-HHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894           85 GAVGALLVYDVTRHVTFENVER-WLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN  162 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      .+|++++|||++++.+|+.+.. |...+.... ..+.|+++|+||+|+.....+..++...++...+++|+++||+++.|
T Consensus        85 ~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~  164 (211)
T PLN03118         85 NAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTREN  164 (211)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999999999865 655554333 25689999999999987667777888888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027894          163 VENAFTEVLTQIYHVV  178 (217)
Q Consensus       163 v~~~~~~i~~~~~~~~  178 (217)
                      ++++|++|.+.+.+..
T Consensus       165 v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        165 VEQCFEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999997653

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=3.3e-33  Score=200.11  Aligned_cols=160  Identities=51%  Similarity=0.840  Sum_probs=147.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.++..+..|+..+.....++.|+++|+||+|+.....+..++...++...++.++++||+++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998876666789999999999998777788888999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=5.5e-33  Score=199.42  Aligned_cols=163  Identities=62%  Similarity=0.944  Sum_probs=149.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+......+.|+++|+||+|+........+....++...+++++++|++++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998887665789999999999997766777888888998899999999999999999999999998


Q ss_pred             HHH
Q 027894          174 IYH  176 (217)
Q Consensus       174 ~~~  176 (217)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            764

Rab GTPases are implicated in vesicle trafficking.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.3e-33  Score=203.38  Aligned_cols=160  Identities=29%  Similarity=0.475  Sum_probs=139.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|+|||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+...+..+++++|++++|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            479999999999999999999999998788888766554 3456788889999999999999998898999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcC-CcEEEeccC
Q 027894           93 YDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAEREN-TFFMETSAL  158 (217)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  158 (217)
                      ||++++.+|+.+. .|+..+.... .+.|+++|+||+|+...            +.+..+++.+++...+ +.|+++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999996 5888887654 57999999999998543            4567788888988877 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027894          159 ESMNVENAFTEVLTQI  174 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~~  174 (217)
                      +|.|++++|+.++..+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=5e-33  Score=199.79  Aligned_cols=160  Identities=31%  Similarity=0.537  Sum_probs=141.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            7999999999999999999999888777767766544 355667888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      |+++..+++.+..|+..+.... ..+.|+++|+||+|+.+...+..++...+++..+++++++||+++.|++++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988887643 367999999999999876667777788888888999999999999999999999987


Q ss_pred             HH
Q 027894          173 QI  174 (217)
Q Consensus       173 ~~  174 (217)
                      .+
T Consensus       161 ~l  162 (164)
T cd04175         161 QI  162 (164)
T ss_pred             Hh
Confidence            65

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=7.5e-33  Score=198.41  Aligned_cols=159  Identities=36%  Similarity=0.653  Sum_probs=143.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE--DKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      +||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+.  +..+.+.+|||||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998888788888888777767666  777899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |||++++.+++.+..|+..+.... .+.|+++|+||+|+.....+..++...++...+++++++||+++.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999998887655 6799999999999987677788888999999999999999999999999999987


Q ss_pred             HH
Q 027894          172 TQ  173 (217)
Q Consensus       172 ~~  173 (217)
                      +.
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            53

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.3e-32  Score=198.65  Aligned_cols=162  Identities=35%  Similarity=0.619  Sum_probs=143.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|.+|||||||+++|..+.+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988888998888887888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCccc--CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           95 VTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCA--VSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      ++++.+++.+..|+..+.... ....|+++|+||+|+.+...  ...+++..++.+.+++++++||+++.|++++|+.|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999876543 24578999999999864332  345667788888889999999999999999999999


Q ss_pred             HHHHH
Q 027894          172 TQIYH  176 (217)
Q Consensus       172 ~~~~~  176 (217)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=9e-33  Score=197.89  Aligned_cols=160  Identities=34%  Similarity=0.590  Sum_probs=140.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+++|..+.+.+.+.++.+.+.....+.+++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988877777777776767777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+.... .+.|+++|+||+|+...   ...+...+++..+++++++||+++.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999887654 57999999999998431   2344556677778999999999999999999999998


Q ss_pred             HHHH
Q 027894          174 IYHV  177 (217)
Q Consensus       174 ~~~~  177 (217)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            8765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.5e-32  Score=196.68  Aligned_cols=160  Identities=38%  Similarity=0.738  Sum_probs=145.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+++.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.+|+.+..|+..+......+.|+++++||+|+.+......++...++...+++++++||+++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998876655579999999999997666778888888888889999999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.4e-32  Score=197.34  Aligned_cols=163  Identities=39%  Similarity=0.675  Sum_probs=144.6

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34679999999999999999999999998887778888877777788888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccC----CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCCHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHT----DSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMNVE  164 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  164 (217)
                      ++|||++++.+++.+..|+..+....    ..+.|+++|+||+|+. .+.+..+++.+++...+ .+++++||+++.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            99999999999999999988776543    2568999999999986 45677888899988887 479999999999999


Q ss_pred             HHHHHHHHH
Q 027894          165 NAFTEVLTQ  173 (217)
Q Consensus       165 ~~~~~i~~~  173 (217)
                      ++|+++++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.6e-32  Score=197.47  Aligned_cols=160  Identities=33%  Similarity=0.602  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998887778888888877777777888899999999999999888889999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+.... .+.|+++|+||+|+.+ .... .+..+++...+++++++||++++|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVC-GNIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            9999999999999999998776 4899999999999973 2333 33456667778899999999999999999999988


Q ss_pred             HHH
Q 027894          174 IYH  176 (217)
Q Consensus       174 ~~~  176 (217)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.2e-32  Score=197.63  Aligned_cols=160  Identities=33%  Similarity=0.534  Sum_probs=140.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999998877766654 445566777888888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      |++++.+|+++..|+..+..... .+.|+++|+||+|+.....+...+...++...+++++++||+++.|++++|.++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876543 67999999999999766666777778888888899999999999999999999987


Q ss_pred             HH
Q 027894          173 QI  174 (217)
Q Consensus       173 ~~  174 (217)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=3.5e-32  Score=195.10  Aligned_cols=162  Identities=49%  Similarity=0.836  Sum_probs=147.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|+|||||+++|++..+.....++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998877778888778788888888889999999999999998899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      +|++++.+++.+..|+..+........|+++++||+|+........++...++...+++++++||+++.|+.++|+++.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999888766577999999999999866677888888888888999999999999999999999998


Q ss_pred             HH
Q 027894          173 QI  174 (217)
Q Consensus       173 ~~  174 (217)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.8e-32  Score=196.91  Aligned_cols=161  Identities=37%  Similarity=0.591  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|||||||+++|.+..+...+.++.+.. ....+.+++..+.+.+|||||++++...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            589999999999999999999998877776666533 3455667788889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+...+....++...++...+++++++||+++.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999998888766543 57899999999999776667778888888888999999999999999999999998


Q ss_pred             HHH
Q 027894          173 QIY  175 (217)
Q Consensus       173 ~~~  175 (217)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=2.9e-32  Score=196.95  Aligned_cols=162  Identities=38%  Similarity=0.696  Sum_probs=146.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-AITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~ii~   91 (217)
                      .++|+++|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999999887787888888888888888888999999999998886 578888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC---CCCHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE---SMNVENAF  167 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~  167 (217)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++|+++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            9999999999999999988876543 6799999999999987777888888999998999999999999   89999999


Q ss_pred             HHHHHHH
Q 027894          168 TEVLTQI  174 (217)
Q Consensus       168 ~~i~~~~  174 (217)
                      ..+.+.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-32  Score=181.64  Aligned_cols=182  Identities=49%  Similarity=0.828  Sum_probs=172.5

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      -.+.+.+|-+++|.-|+|||.|+..|....|...-+.+.+..+....+.+.+..+++++|||.|+++|+...+.+++.+.
T Consensus         6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa   85 (215)
T KOG0097|consen    6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   85 (215)
T ss_pred             cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +.++|||++.+.++..+..|+........++..+++++||.|+...+.+..++.++|+++.+..++++||++|+++++.|
T Consensus        86 galmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedaf  165 (215)
T KOG0097|consen   86 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF  165 (215)
T ss_pred             ceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence            99999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCC
Q 027894          168 TEVLTQIYHVVSRKALDIGGDP  189 (217)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~~~~~  189 (217)
                      -.....+++...++..+++...
T Consensus       166 le~akkiyqniqdgsldlnaae  187 (215)
T KOG0097|consen  166 LETAKKIYQNIQDGSLDLNAAE  187 (215)
T ss_pred             HHHHHHHHHhhhcCcccccchh
Confidence            9999999999999988876653

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.6e-32  Score=196.31  Aligned_cols=159  Identities=35%  Similarity=0.463  Sum_probs=137.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+++++++.+...+.++.+..+ ...+......+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999998777767665433 444556777789999999999999988888999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccC---CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHT---DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      |++++.+++.+..|+..+....   ..+.|+++|+||+|+...+++..++...++..++++++++||++|+|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999887776543   2579999999999997666777778888888888999999999999999999999


Q ss_pred             HHH
Q 027894          171 LTQ  173 (217)
Q Consensus       171 ~~~  173 (217)
                      ++.
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=2.2e-32  Score=198.11  Aligned_cols=158  Identities=33%  Similarity=0.511  Sum_probs=137.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+.++..+.+...+.++.+. .....+.+++..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            79999999999999999999999988877777653 33445667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894           94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSALE  159 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      |++++.||+.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++++.+. +++++||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 6888776654 57999999999999542            24778889999999884 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQ  173 (217)
Q Consensus       160 ~~~v~~~~~~i~~~  173 (217)
                      |+|++++|+.+.+.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=4.5e-32  Score=194.15  Aligned_cols=160  Identities=32%  Similarity=0.534  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999988777777765444 45566788778899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +.....+...++...+++++++||+++.|++++|+++.
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999988888876543 5789999999999865 45666778888888899999999999999999999998


Q ss_pred             HHH
Q 027894          172 TQI  174 (217)
Q Consensus       172 ~~~  174 (217)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=4.6e-32  Score=194.65  Aligned_cols=161  Identities=35%  Similarity=0.573  Sum_probs=140.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|+|||||++++++..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            48999999999999999999999887666666665433 44556788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.....+..++..++++..+++++++||+++.|++++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999988887643 25789999999999977666777788888888899999999999999999999998


Q ss_pred             HHH
Q 027894          172 TQI  174 (217)
Q Consensus       172 ~~~  174 (217)
                      ..+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.1e-32  Score=199.97  Aligned_cols=156  Identities=30%  Similarity=0.551  Sum_probs=139.9

Q ss_pred             EcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh
Q 027894           19 IGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH   98 (217)
Q Consensus        19 vG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~   98 (217)
                      +|..|||||||+++|+.+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999988877888888888888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894           99 VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus        99 ~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                      .||+.+..|+..+.... .+.|+++|+||+|+.. +.+..+. ..++...++.|+++||++++|++++|++|.+.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998765 6899999999999864 3444443 467778899999999999999999999999988754

Ran is involved in the active transport of proteins through nuclear pores.

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=2.5e-32  Score=200.47  Aligned_cols=161  Identities=35%  Similarity=0.536  Sum_probs=138.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|.+|||||||+++|..+.+...+.++.+..+. ..+..++..+.+.+|||+|++.+..++..+++.+|++++|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            7999999999999999999999998777777765543 455567888999999999999999889899999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc------------cCCHHHHHHHHHHcC-CcEEEeccCCC
Q 027894           95 VTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC------------AVSTEDAKAFAEREN-TFFMETSALES  160 (217)
Q Consensus        95 ~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~  160 (217)
                      ++++.||+.+. .|+..+.... .+.|+++|+||+|+...+            .+..++...++...+ ++|+++||+++
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            99999999986 5888887654 589999999999996533            345667778887776 78999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027894          161 MNVENAFTEVLTQIYHV  177 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~~~  177 (217)
                      .|++++|+++.+.+...
T Consensus       160 ~~v~e~f~~l~~~~~~~  176 (189)
T cd04134         160 RGVNEAFTEAARVALNV  176 (189)
T ss_pred             CCHHHHHHHHHHHHhcc
Confidence            99999999999988743

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=4.9e-32  Score=199.82  Aligned_cols=162  Identities=21%  Similarity=0.287  Sum_probs=136.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhHhhhcC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR--------AITSAYYRG   85 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~   85 (217)
                      +||+++|.+|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+|||||.+.+.        ......++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999999988787887766666667778888999999999965432        123345789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccC---CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-HcCCcEEEeccCCCC
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHT---DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-RENTFFMETSALESM  161 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  161 (217)
                      +|++++|||++++.|++.+..|+..+....   ..++|+++|+||+|+...+.+..++...++. ..+++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999988887654   3679999999999997766667676777654 468999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027894          162 NVENAFTEVLTQIY  175 (217)
Q Consensus       162 ~v~~~~~~i~~~~~  175 (217)
                      |++++|+.++..+.
T Consensus       161 ~v~~lf~~i~~~~~  174 (198)
T cd04142         161 HILLLFKELLISAT  174 (198)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998777

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.8e-31  Score=191.71  Aligned_cols=160  Identities=33%  Similarity=0.586  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC--cCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +||+++|.+|||||||+++|...  .+...+.++.+.++....+.+. +..+.+.+|||||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6777777888877777766664 56789999999999999998999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+..++...+...+....+++++++||+++.|++++|+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999887665 579999999999997766677777777777788999999999999999999999


Q ss_pred             HHHH
Q 027894          171 LTQI  174 (217)
Q Consensus       171 ~~~~  174 (217)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=2.2e-31  Score=190.61  Aligned_cols=161  Identities=39%  Similarity=0.685  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++|.+..+.....++.+.......+...+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887766667666676667777777789999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+......+.|+++|+||+|+.....+..++..+++...+++++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999988887765679999999999998766777788888888889999999999999999999999876


Q ss_pred             H
Q 027894          174 I  174 (217)
Q Consensus       174 ~  174 (217)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=3.3e-31  Score=191.66  Aligned_cols=165  Identities=41%  Similarity=0.707  Sum_probs=145.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|||||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|+++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888788888887777888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCC----CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMNVENAFT  168 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~  168 (217)
                      |++++.+++.+..|...+.....    .+.|+++|+||+|+..+.....++...+....+ ++++++|++++.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999988888776654432    379999999999997656667788888888877 7899999999999999999


Q ss_pred             HHHHHHHHHh
Q 027894          169 EVLTQIYHVV  178 (217)
Q Consensus       169 ~i~~~~~~~~  178 (217)
                      ++.+.+.+..
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=3.9e-31  Score=189.36  Aligned_cols=159  Identities=52%  Similarity=0.839  Sum_probs=142.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+++|.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777788888887777778888889999999999999888899999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+.. .....++...++...+++++++||++|.|++++|+.+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999988876653 6899999999999963 356677888888889999999999999999999999887


Q ss_pred             H
Q 027894          173 Q  173 (217)
Q Consensus       173 ~  173 (217)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=9.3e-31  Score=188.84  Aligned_cols=164  Identities=41%  Similarity=0.774  Sum_probs=145.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||++++..+.+.+.+.++.+.++....+.+.+..+.+.+||+||++.+...+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999988887777787777777777888888889999999999999988899999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....+......+++++||++|.|++++|++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999988877665679999999999997766777777778887778899999999999999999999


Q ss_pred             HHHH
Q 027894          171 LTQI  174 (217)
Q Consensus       171 ~~~~  174 (217)
                      .+.+
T Consensus       165 ~~~~  168 (169)
T cd04114         165 ACRL  168 (169)
T ss_pred             HHHh
Confidence            8765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1.8e-31  Score=196.10  Aligned_cols=158  Identities=25%  Similarity=0.381  Sum_probs=128.8

Q ss_pred             eeEEEEEcCCCCChHHHHH-HHhhCc-----CCCCCCcccce-eEEEEE--------EEECCeEEEEEEEeCCCchhhhh
Q 027894           13 LYKVVLIGDSGVGKSNLLS-RFTRNE-----FSLESKSTIGV-EFATRS--------IRVEDKIVKAQIWDTAGQERYRA   77 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~   77 (217)
                      .+||+++|..|||||||+. ++.+..     +...+.+|.+. +.+...        ..+++..+.+.+|||+|++..  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4799999999999999995 665543     34455566642 222222        246788899999999998753  


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCC-------------------cccCC
Q 027894           78 ITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH-------------------LCAVS  137 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~  137 (217)
                      ....+++++|++++|||++++.||+.+. .|+..+.... .+.|+++|+||+|+.+                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4556889999999999999999999996 5988887655 5789999999999863                   36788


Q ss_pred             HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894          138 TEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      .+++..+++.++++|+++||++++|++++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=5.1e-31  Score=190.09  Aligned_cols=161  Identities=33%  Similarity=0.534  Sum_probs=141.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            7899999999999999999999988777767765443 556667888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |++++.+++.+..|...+.... ..+.|+++++||.|+...+.+..++...++..++ ++++++||+++.|++++|+++.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988887543 2679999999999997767777778888888887 8899999999999999999999


Q ss_pred             HHHH
Q 027894          172 TQIY  175 (217)
Q Consensus       172 ~~~~  175 (217)
                      ..++
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            8765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=2.3e-31  Score=192.89  Aligned_cols=158  Identities=34%  Similarity=0.553  Sum_probs=136.7

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV   95 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   95 (217)
                      |+++|.+|||||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            68999999999999999999998777766665443 44566788888999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEeccCCCC
Q 027894           96 TRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSALESM  161 (217)
Q Consensus        96 ~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  161 (217)
                      +++.||+.+. .|+..+.... ++.|+++|+||+|+...            ..+..+++..+++..++ +++++||+++.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 5888887655 68999999999999642            23677888889999886 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027894          162 NVENAFTEVLTQIY  175 (217)
Q Consensus       162 ~v~~~~~~i~~~~~  175 (217)
                      |++++|+.+++.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=2.8e-31  Score=191.51  Aligned_cols=163  Identities=21%  Similarity=0.206  Sum_probs=140.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ...+||+++|.+|||||||+++|+++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46899999999999999999999999998 77788888777777777888888899999999999988888899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFT  168 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~  168 (217)
                      ++|||++++.+++.+..|+..+...  .+.|+++|+||+|+.+.......+..++++..++. ++++||+++.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            9999999999999998888766432  47999999999999654444444566777777774 79999999999999999


Q ss_pred             HHHHHHH
Q 027894          169 EVLTQIY  175 (217)
Q Consensus       169 ~i~~~~~  175 (217)
                      .+.+.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=4.7e-31  Score=200.28  Aligned_cols=160  Identities=24%  Similarity=0.424  Sum_probs=138.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+++|+++.+...+.+|.+ ++....+.+++..+.+.+|||+|++.+...+..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998877777765 455666778888899999999999999888888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhcc---------CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-cCCcEEEeccCCCCCH
Q 027894           94 DVTRHVTFENVERWLKELRGH---------TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-ENTFFMETSALESMNV  163 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v  163 (217)
                      |+++..||+.+..|+..+...         ...+.|+++|+||+|+...+++..+++.+++.. .++.++++||+++.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888653         225799999999999976667788888877764 4678999999999999


Q ss_pred             HHHHHHHHHHH
Q 027894          164 ENAFTEVLTQI  174 (217)
Q Consensus       164 ~~~~~~i~~~~  174 (217)
                      +++|++|.+.+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=6.3e-31  Score=197.19  Aligned_cols=166  Identities=30%  Similarity=0.391  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc-CCcEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR-GAVGALL   91 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~ii~   91 (217)
                      +||+++|.+|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+|||||++.+  ....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence            58999999999999999999988875 555566554666777778888899999999999832  3344566 8999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      |||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988876542 679999999999997777778888888888889999999999999999999999


Q ss_pred             HHHHHHHhhcc
Q 027894          171 LTQIYHVVSRK  181 (217)
Q Consensus       171 ~~~~~~~~~~~  181 (217)
                      .+.+.......
T Consensus       159 ~~~~~~~~~~~  169 (221)
T cd04148         159 VRQIRLRRDSK  169 (221)
T ss_pred             HHHHHhhhccc
Confidence            99887655443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-33  Score=187.67  Aligned_cols=174  Identities=40%  Similarity=0.682  Sum_probs=156.9

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC---------CeEEEEEEEeCCCchhhhhh
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE---------DKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      -++++.++.+.+|.+|+||||++.++..+.|......|+++++..+.+.+.         +..+.+++|||+|+++|+++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            356788899999999999999999999999999999999999988877663         34578999999999999999


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ..++++.+=+++++||+++..||-++..|+..+..+.- .+..+++++||+|+.+.+.++.+++.+++.++++|||++||
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA  163 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA  163 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence            99999999999999999999999999999998876542 56778999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhcc
Q 027894          158 LESMNVENAFTEVLTQIYHVVSRK  181 (217)
Q Consensus       158 ~~~~~v~~~~~~i~~~~~~~~~~~  181 (217)
                      -++.|+++..+.++..+++..++-
T Consensus       164 ~tg~Nv~kave~LldlvM~Rie~~  187 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVMKRIEQC  187 (219)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888887766543

>cd00154 Rab Rab family

Probab=100.00  E-value=1.1e-30  Score=186.03  Aligned_cols=158  Identities=54%  Similarity=0.890  Sum_probs=144.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998887788888888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |++++.+++.+..|+..+......+.|+++++||+|+........++...++...+++++++|++++.|++++|++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999988877656799999999999975566778889999988899999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=6.2e-31  Score=187.49  Aligned_cols=153  Identities=20%  Similarity=0.331  Sum_probs=129.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|+.|+|||||+.+++.+.+...+.++. -.+ ...+.+++..+.+.+|||+|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            589999999999999999999988876654432 233 45677888888999999999964     24568899999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCC--CcccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLR--HLCAVSTEDAKAFAERE-NTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      |++++.||+.+..|+..+..... .+.|+++|+||.|+.  ..+++..+++.++++.. ++.|++|||+++.|++++|+.
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999887654 678999999999985  35678888888898776 589999999999999999999


Q ss_pred             HHHH
Q 027894          170 VLTQ  173 (217)
Q Consensus       170 i~~~  173 (217)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=9.3e-31  Score=189.61  Aligned_cols=157  Identities=34%  Similarity=0.544  Sum_probs=135.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||++++.++.+...+.++. .+.....+.+++..+.+.+|||||++.+...+..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988877776665 4444556777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894           94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAERENT-FFMETSALE  159 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      |++++.+|+.+. .|+..+.... .+.|+++|+||+|+..            .+.+..+++..+++..+. +++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999884 6888777543 5799999999999853            346778889999998887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLT  172 (217)
Q Consensus       160 ~~~v~~~~~~i~~  172 (217)
                      +.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.98  E-value=4.9e-31  Score=189.63  Aligned_cols=160  Identities=34%  Similarity=0.512  Sum_probs=135.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-hhhhhHhhhcCCcEEEEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-YRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~   93 (217)
                      ||+++|++|+|||||+++++...+...+.++....+ ...+.+++..+.+.+||+||++. .......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999999887666656654333 45566788888999999999875 3445677889999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccC--CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC-CCHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHT--DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES-MNVENAFTEV  170 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v~~~~~~i  170 (217)
                      |++++.||+.+..|+..+....  ..+.|+++|+||+|+...+.+..++...++...+++|+++||+++ .|++++|+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887654  357999999999999766677888888999888999999999999 5999999999


Q ss_pred             HHHHH
Q 027894          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      .+.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            88664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=5.6e-33  Score=183.05  Aligned_cols=162  Identities=43%  Similarity=0.705  Sum_probs=150.1

Q ss_pred             EEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeC
Q 027894           17 VLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV   95 (217)
Q Consensus        17 ~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   95 (217)
                      +++|.+++|||.|+-++..+.|.. ...+|.++++..+.+.++++.+++++|||.||++|++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            478999999999999988877654 4568899999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894           96 TRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus        96 ~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      .++.||+..+.|+..+..+....+.+.+++||+|+..++.+..++.+.+++.+++|+.++||++|.|++..|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999888777888999999999888899999999999999999999999999999999999998887


Q ss_pred             HHh
Q 027894          176 HVV  178 (217)
Q Consensus       176 ~~~  178 (217)
                      +..
T Consensus       161 k~~  163 (192)
T KOG0083|consen  161 KLK  163 (192)
T ss_pred             Hhc
Confidence            544

>cd04135 Tc10 TC10 subfamily

Probab=99.98  E-value=1.9e-30  Score=188.10  Aligned_cols=159  Identities=30%  Similarity=0.481  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999998776666654 333445667888888999999999999988999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894           94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSALE  159 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      |++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+.            +.+..+++..++...++ +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999885 577777655 478999999999998542            25667888888888886 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQI  174 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~  174 (217)
                      +.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=5.7e-30  Score=183.64  Aligned_cols=161  Identities=35%  Similarity=0.547  Sum_probs=139.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++++...+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999988777666654433 445567878899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+.........+...++..++++++++||++++|++++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999998888877643 57999999999999765556777778888888899999999999999999999988


Q ss_pred             HHH
Q 027894          173 QIY  175 (217)
Q Consensus       173 ~~~  175 (217)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=1.1e-29  Score=181.42  Aligned_cols=158  Identities=35%  Similarity=0.561  Sum_probs=139.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|++|||||||++++++..+...+.++.. +.....+...+..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999999887777666665 4555566677777899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894           95 VTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      ++++.+++.+..|+..+..... ...|+++|+||+|+........+++..++...+.+++++|++++.|++++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888877664 589999999999998766778888889999888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.4e-29  Score=184.88  Aligned_cols=167  Identities=20%  Similarity=0.329  Sum_probs=132.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      .+||+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||||++.+...+..+++++|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            48999999999999999999998887644 466665555554443 3456889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH------cCCcEEEeccCCCCCHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER------ENTFFMETSALESMNVE  164 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~  164 (217)
                      |+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+  ....++...+...      .+++++++||++++|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            9999999999988888877665432 5799999999999864  2344444444321      13568999999999999


Q ss_pred             HHHHHHHHHHHHHhhccc
Q 027894          165 NAFTEVLTQIYHVVSRKA  182 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~~~  182 (217)
                      ++|++|.+.+.+.+...+
T Consensus       160 ~l~~~l~~~l~~~~~~~~  177 (183)
T cd04152         160 EGLEKLYEMILKRRKMLR  177 (183)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999987775443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=8.7e-30  Score=183.53  Aligned_cols=154  Identities=19%  Similarity=0.355  Sum_probs=123.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|||||||+++|..+.+.. +.+|.+.++.  .+..  ..+.+.+|||||++.+...+..+++.+|++++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999998877643 4566665543  2333  34789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----cCCcEEEeccCCCCCHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----ENTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~  165 (217)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  .+..+++.+++..     ..+.++++||++|.|+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            999999999998888776665432 25789999999999865  3455666665422     235689999999999999


Q ss_pred             HHHHHHH
Q 027894          166 AFTEVLT  172 (217)
Q Consensus       166 ~~~~i~~  172 (217)
                      +|++|.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=5.3e-29  Score=181.52  Aligned_cols=164  Identities=36%  Similarity=0.498  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      .||+++|.+|+|||||+++|.+..+.....++....+ ...+..++..+.+.+||+||++.+...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999888666666654433 444556777788999999999999988999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      |+++..+++.+..|+..+..... .+.|+++|+||+|+...+....++...++...+++++++||+++.|+.++|.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999988877766432 57899999999999766666777777888888899999999999999999999999


Q ss_pred             HHHHHh
Q 027894          173 QIYHVV  178 (217)
Q Consensus       173 ~~~~~~  178 (217)
                      .+....
T Consensus       161 ~~~~~~  166 (180)
T cd04137         161 EIEKVE  166 (180)
T ss_pred             HHHHhc
Confidence            887554

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=3.1e-29  Score=181.89  Aligned_cols=159  Identities=30%  Similarity=0.503  Sum_probs=133.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      .||+++|++|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            68999999999999999999999988777777655443 35567888889999999999999888888889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894           94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSALE  159 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      |++++.+|+.+. .|+..+.... .+.|+++|+||+|+...            ..+...+..+++...+. +++++||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999885 5777776544 57999999999998532            23445677788877764 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQI  174 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~  174 (217)
                      |.|++++|+++.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=2.1e-29  Score=182.76  Aligned_cols=157  Identities=18%  Similarity=0.342  Sum_probs=122.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|.+|||||||+++|..+.+. .+.+|.+.++.  .+...  .+.+.+||+||++.+...+..+++++|+++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            44699999999999999999999877764 34566665543  33333  478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~  164 (217)
                      +|||++++.+++.+..|+..+.... ..+.|++||+||.|+.+.  ...++......     ...+.++++||++|+|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            9999999999999888877765432 257899999999998652  23333333221     123457789999999999


Q ss_pred             HHHHHHHHHH
Q 027894          165 NAFTEVLTQI  174 (217)
Q Consensus       165 ~~~~~i~~~~  174 (217)
                      ++|++|.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=4.2e-29  Score=181.95  Aligned_cols=158  Identities=17%  Similarity=0.319  Sum_probs=123.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|.+|||||||+++|..+.+.. +.+|.+.+..  .+..  ..+.+.+||+||++.+..+|..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            345899999999999999999999877753 4566665443  3333  3478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-----CCcEEEeccCCCCCHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-----NTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~  164 (217)
                      +|||++++.+++.+..++..+.... ..+.|++|++||+|+.+.  ...++..+.....     .+.++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            9999999999998877776664332 257999999999998753  3334433332211     1246689999999999


Q ss_pred             HHHHHHHHHHH
Q 027894          165 NAFTEVLTQIY  175 (217)
Q Consensus       165 ~~~~~i~~~~~  175 (217)
                      ++|++|.+.+.
T Consensus       168 e~~~~l~~~~~  178 (181)
T PLN00223        168 EGLDWLSNNIA  178 (181)
T ss_pred             HHHHHHHHHHh
Confidence            99999988765

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=3.9e-29  Score=182.79  Aligned_cols=166  Identities=35%  Similarity=0.513  Sum_probs=153.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|+|||+|..+|....|...+.+|.+ +.+...+.+++..+.+.++||+|++.+..+...++++.|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999999999987 5566777788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      ||+++++.||+.+..++..+.+... ...|+++||||+|+...+.+..+++..++..++++|+++||+.+.+++++|..+
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999965544 668999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027894          171 LTQIYHVV  178 (217)
Q Consensus       171 ~~~~~~~~  178 (217)
                      ++.+...+
T Consensus       161 ~r~~~~~~  168 (196)
T KOG0395|consen  161 VREIRLPR  168 (196)
T ss_pred             HHHHHhhh
Confidence            99887744

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=4.4e-29  Score=180.15  Aligned_cols=155  Identities=21%  Similarity=0.390  Sum_probs=125.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|.+|||||||+++|.+..+.. +.+|.+....  .+...  .+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999987654 5566555443  33333  4789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC------CcEEEeccCCCCCHHHHH
Q 027894           95 VTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN------TFFMETSALESMNVENAF  167 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~  167 (217)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+.+  .+..++..+++...+      +.++++||+++.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            9999999999888888875432 5689999999999864  356666666654222      368899999999999999


Q ss_pred             HHHHHHHHH
Q 027894          168 TEVLTQIYH  176 (217)
Q Consensus       168 ~~i~~~~~~  176 (217)
                      ++|.+.+.+
T Consensus       154 ~~l~~~~~~  162 (169)
T cd04158         154 DWLSRQLVA  162 (169)
T ss_pred             HHHHHHHhh
Confidence            999877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=6e-29  Score=182.26  Aligned_cols=163  Identities=34%  Similarity=0.524  Sum_probs=136.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      .||+++|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998888766656554443 335556777788999999999888777777789999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCC----------cccCCHHHHHHHHHHcCC-cEEEeccCCCC
Q 027894           94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH----------LCAVSTEDAKAFAERENT-FFMETSALESM  161 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  161 (217)
                      |+++..+++.+. .|+..+.... ++.|+++|+||+|+.+          .+.+..++...+++..+. +|+++||+++.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999986 5888887655 5799999999999843          344566778888888885 79999999999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 027894          162 NVENAFTEVLTQIYHVV  178 (217)
Q Consensus       162 ~v~~~~~~i~~~~~~~~  178 (217)
                      |++++|+++.+.+...+
T Consensus       160 ~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         160 GVDDVFEAATRAALLVR  176 (187)
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999998886554

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=7e-29  Score=183.47  Aligned_cols=160  Identities=32%  Similarity=0.430  Sum_probs=133.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|.+|+|||||+++|+...+...+.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988776656553 3445566677877899999999999998888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCC-cccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           95 VTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRH-LCAVSTEDAKAFAE-RENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..++..+... ..+++++++||++|.|++++|+++.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888776554 5799999999999865 34455544444443 4567899999999999999999999


Q ss_pred             HHHH
Q 027894          172 TQIY  175 (217)
Q Consensus       172 ~~~~  175 (217)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=4.3e-30  Score=184.45  Aligned_cols=153  Identities=18%  Similarity=0.301  Sum_probs=125.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      .|+++|.+|||||||+++|.+..+...+.+|.+...    ..++...+.+.+||+||++.+...+..+++++|++++|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            379999999999999999999888777777776543    2234455889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH----HHHHHHHHHcCCcEEEeccCC------CCCHH
Q 027894           95 VTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST----EDAKAFAERENTFFMETSALE------SMNVE  164 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~v~  164 (217)
                      .+++.++..+..|+..+.... .++|+++|+||+|+...+.+..    .++..++.+.++.++++||++      ++|++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999988888876544 6899999999999976443321    223455566788899999998      99999


Q ss_pred             HHHHHHHH
Q 027894          165 NAFTEVLT  172 (217)
Q Consensus       165 ~~~~~i~~  172 (217)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=4.2e-29  Score=178.49  Aligned_cols=152  Identities=18%  Similarity=0.354  Sum_probs=118.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||++++..+.+.. +.+|.+....  .+...  .+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            489999999999999999998887753 5566665543  23333  478999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVENAF  167 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      |++++.+++.+..++..+... .....|+++++||+|+.+.  ...++......     ...+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999988877666433 2256899999999998642  22333222221     123457899999999999999


Q ss_pred             HHHHH
Q 027894          168 TEVLT  172 (217)
Q Consensus       168 ~~i~~  172 (217)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=2.5e-28  Score=182.75  Aligned_cols=167  Identities=30%  Similarity=0.529  Sum_probs=145.4

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +.+....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..++..+
T Consensus         3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~   82 (215)
T PTZ00132          3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG   82 (215)
T ss_pred             cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence            45566779999999999999999999999888888889998888888877788889999999999999988889999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      +++++|||+++..++..+..|+..+.... .+.|+++++||+|+.+. ....+ ...++...++.++++|++++.|+++.
T Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~  159 (215)
T PTZ00132         83 QCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKP  159 (215)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999998887655 67899999999998642 33333 34567778899999999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          167 FTEVLTQIYH  176 (217)
Q Consensus       167 ~~~i~~~~~~  176 (217)
                      |.+|.+.+..
T Consensus       160 f~~ia~~l~~  169 (215)
T PTZ00132        160 FLWLARRLTN  169 (215)
T ss_pred             HHHHHHHHhh
Confidence            9999998865

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=2e-28  Score=178.59  Aligned_cols=159  Identities=20%  Similarity=0.355  Sum_probs=122.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|++|||||||++++..+.+.. +.+|.+.++.  .+..  ..+.+.+|||||++.+...+..+++.+|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999998877754 4566665543  3333  34789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  165 (217)
                      |+|++++.+++.+..++..+... ...+.|+++|+||.|+.+  ....++......     ...+.++++||++|.|+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            99999999999887777666433 225689999999999864  223333322221     1223577999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027894          166 AFTEVLTQIYHV  177 (217)
Q Consensus       166 ~~~~i~~~~~~~  177 (217)
                      +|++|.+.+.+-
T Consensus       169 ~~~~l~~~i~~~  180 (182)
T PTZ00133        169 GLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHh
Confidence            999999877653

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=1.5e-28  Score=178.02  Aligned_cols=157  Identities=20%  Similarity=0.339  Sum_probs=124.0

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ..+..++|+++|++|||||||+++|.+..+. ...++.+.  ....+.++  .+.+.+|||||++.+...+..+++.+|+
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            3455689999999999999999999987553 34455553  33444454  3778999999999998899999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCC
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMN  162 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  162 (217)
                      +++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.  ...++...+..     ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            99999999999999888877776543 2367999999999998653  24455555543     2457899999999999


Q ss_pred             HHHHHHHHHH
Q 027894          163 VENAFTEVLT  172 (217)
Q Consensus       163 v~~~~~~i~~  172 (217)
                      ++++|+++.+
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=2.9e-28  Score=176.07  Aligned_cols=157  Identities=34%  Similarity=0.563  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++|++..+...+.++.. ......+...+..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999988666655554 334445566788889999999999988888888889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc-----------cCCHHHHHHHHHHcCC-cEEEeccCCC
Q 027894           94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC-----------AVSTEDAKAFAERENT-FFMETSALES  160 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  160 (217)
                      |++++.++.... .|+..+.... .+.|+++|+||+|+....           .+..++...++...++ +++++||+++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999998764 5777776654 589999999999996533           2356777888888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 027894          161 MNVENAFTEVLT  172 (217)
Q Consensus       161 ~~v~~~~~~i~~  172 (217)
                      .|+.++|++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=2.4e-28  Score=175.81  Aligned_cols=160  Identities=32%  Similarity=0.413  Sum_probs=124.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+++|.++.+...+..+.  ........+.+..+++.+|||||++.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999998866543321  222333445667789999999999888777777889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcccCC--HHHHHHHHHHcC--CcEEEeccCCCCCHHHHHH
Q 027894           94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--TEDAKAFAEREN--TFFMETSALESMNVENAFT  168 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~  168 (217)
                      |++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.....  .++...++....  .+++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 6877777655 579999999999997644321  233334444332  3799999999999999999


Q ss_pred             HHHHHHHH
Q 027894          169 EVLTQIYH  176 (217)
Q Consensus       169 ~i~~~~~~  176 (217)
                      .+.+.+.+
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=3.8e-28  Score=178.82  Aligned_cols=147  Identities=24%  Similarity=0.401  Sum_probs=125.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-----CeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-----DKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +||+++|.+|+|||||+++|.++.+...+.+|.+.++....+.+.     +..+.+.+|||+|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888877777766663     467899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccC-------------------CCCCcEEEEEeCCCCCCcccCCHHH----HHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHT-------------------DSNIVIMLVGNKADLRHLCAVSTED----AKAFA  145 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~iiv~nK~D~~~~~~~~~~~----~~~~~  145 (217)
                      +|+|||++++.||+.+..|+..+....                   ..+.|+++|+||.|+.+++.+..+.    ...++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999986531                   2468999999999997655555442    44667


Q ss_pred             HHcCCcEEEeccCCC
Q 027894          146 ERENTFFMETSALES  160 (217)
Q Consensus       146 ~~~~~~~~~~Sa~~~  160 (217)
                      ++.+++.++.++.+.
T Consensus       161 ~~~~~~~i~~~c~~~  175 (202)
T cd04102         161 EQGNAEEINLNCTNG  175 (202)
T ss_pred             HhcCCceEEEecCCc
Confidence            889999999998865

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=4.6e-28  Score=173.51  Aligned_cols=152  Identities=18%  Similarity=0.325  Sum_probs=117.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC-CCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +|+++|.+|||||||+++|.+..+ ...+.++.+....  .+..  ..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998763 4455566664432  2222  3478899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccC---CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHT---DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVEN  165 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  165 (217)
                      |++++.++..+..|+..+....   ..+.|+++|+||+|+.+..  ..++......     ...++++++||+++.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888877765532   2579999999999986532  2233322221     1234589999999999999


Q ss_pred             HHHHHHH
Q 027894          166 AFTEVLT  172 (217)
Q Consensus       166 ~~~~i~~  172 (217)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=2.2e-27  Score=171.68  Aligned_cols=143  Identities=34%  Similarity=0.655  Sum_probs=128.2

Q ss_pred             CcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccC
Q 027894           36 NEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHT  115 (217)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~  115 (217)
                      +.|...+.+|.+.++....+.+++..+++.+|||+|++.+...+..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            34666778899999988888889999999999999999999999999999999999999999999999999999887665


Q ss_pred             CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          116 DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       116 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      ..+.|+++|+||+|+...+.+..+++..++..+++.|+++||++|+|++++|++|.+.+.+..
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            567899999999999776678888888998888999999999999999999999999887644

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=9.9e-29  Score=176.98  Aligned_cols=166  Identities=34%  Similarity=0.513  Sum_probs=150.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ...+|+.+||...+|||+|+-.+..+.|+..+.+|.- +.+...+.++ ++.+.+.+|||+|++.|+.++...++++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3468999999999999999999999999999999985 7777778885 9999999999999999999888899999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcC-CcEEEe
Q 027894           90 LLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAEREN-TFFMET  155 (217)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  155 (217)
                      ++||++.++.||+++ ..|+.++..++ ++.|+|+||+|.|++++            ..+..+++..++++.| ..|+++
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999997 67999999988 89999999999999742            3677899999999999 569999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHh
Q 027894          156 SALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      ||++..|++++|+..+...+...
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhccc
Confidence            99999999999999999887554

>PLN00023 GTP-binding protein; Provisional

Probab=99.96  E-value=7e-27  Score=180.13  Aligned_cols=191  Identities=21%  Similarity=0.348  Sum_probs=146.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-------------CeEEEEEEEeCCCchhh
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-------------DKIVKAQIWDTAGQERY   75 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~   75 (217)
                      +....+||+++|..|||||||+++|.++.+...+.+|.+.++....+.++             +..+.+.||||+|++.|
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            34567999999999999999999999999988888898888877766664             24688999999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC------------CCCcEEEEEeCCCCCCcc---c---CC
Q 027894           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD------------SNIVIMLVGNKADLRHLC---A---VS  137 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~iiv~nK~D~~~~~---~---~~  137 (217)
                      ..++..++++++++|+|||+++..+++.+..|+..+.....            .++|++||+||+|+...+   .   +.
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999986531            358999999999996542   2   35


Q ss_pred             HHHHHHHHHHcCCc-E---------------EEeccCCCCCHHHHHHHHHHHHHHHhhccccCCCCCC-CCCCCCceee
Q 027894          138 TEDAKAFAERENTF-F---------------METSALESMNVENAFTEVLTQIYHVVSRKALDIGGDP-AALPKGQTIN  199 (217)
Q Consensus       138 ~~~~~~~~~~~~~~-~---------------~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  199 (217)
                      .+++++++++.++. .               +-+.|+.+.-=.|.+....+.++..+--...-.-+.+ +..|+++++-
T Consensus       177 ~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (334)
T PLN00023        177 VDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSDELPAPSPWSLSPQRSSQR  255 (334)
T ss_pred             HHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhhcccCCCCCCcccCCCCcccc
Confidence            78999999988742 1               2233555444456666666666666655444433333 4445555443

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=2.5e-27  Score=171.76  Aligned_cols=153  Identities=23%  Similarity=0.367  Sum_probs=119.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .++|+++|++|+|||||++++..+.+.. ..++.+.++.  .+.++  .+.+.+||+||++.+...+..+++.+|++++|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999887764 4456554443  33334  47899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVENA  166 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      +|++++.++.....++..+.... ..+.|+++++||+|+..  ....++..+..     ...+++++++||++++|++++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence            99999999888877666665433 25799999999999865  22333332222     224467999999999999999


Q ss_pred             HHHHHH
Q 027894          167 FTEVLT  172 (217)
Q Consensus       167 ~~~i~~  172 (217)
                      |++|.+
T Consensus       168 ~~~l~~  173 (174)
T cd04153         168 LDWIAS  173 (174)
T ss_pred             HHHHhc
Confidence            999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=9.5e-28  Score=172.82  Aligned_cols=151  Identities=23%  Similarity=0.366  Sum_probs=119.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      .|+++|.+|||||||+++|.+. +...+.+|.+..  ...+...  .+.+.+||+||++.+...+..+++++|++++|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999977 555666776654  3344444  3788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHH------HHHHHHc--CCcEEEeccCCC-----
Q 027894           95 VTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDA------KAFAERE--NTFFMETSALES-----  160 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~------~~~~~~~--~~~~~~~Sa~~~-----  160 (217)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+.+..  ...+.      ..++.+.  .+.++++||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            9999999999999888876532 579999999999996533  22222      2223222  356888999998     


Q ss_pred             -CCHHHHHHHHHH
Q 027894          161 -MNVENAFTEVLT  172 (217)
Q Consensus       161 -~~v~~~~~~i~~  172 (217)
                       .|+.+.|+||.+
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=2.4e-27  Score=170.65  Aligned_cols=152  Identities=24%  Similarity=0.411  Sum_probs=117.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCC------CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFS------LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +|+++|++|+|||||+++|.+....      ..+.++.+...  ..+.++  ...+.+|||||++.+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999999864321      12234443333  334444  3789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-------cCCcEEEeccCCC
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER-------ENTFFMETSALES  160 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  160 (217)
                      +++|+|++++.++.....++..+..... .+.|+++++||+|+..  ....++...+...       .+++++++||+++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            9999999999999888888777765432 6799999999999865  3444445444432       3467999999999


Q ss_pred             CCHHHHHHHHHH
Q 027894          161 MNVENAFTEVLT  172 (217)
Q Consensus       161 ~~v~~~~~~i~~  172 (217)
                      +|+++++++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=2.4e-27  Score=169.51  Aligned_cols=152  Identities=23%  Similarity=0.427  Sum_probs=117.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      +|+++|.+|||||||+++|.+..+... .++.+...  ..+... ..+.+.+||+||++.+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887543 45555443  333332 34789999999999998889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHH------HHcCCcEEEeccCCCCCHHHHH
Q 027894           95 VTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFA------ERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      .+++.++..+..|+..+..... .+.|+++|+||+|+...  ...++.....      ...+++++++||++|+|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999999988888777655432 57999999999998542  2233332221      1234569999999999999999


Q ss_pred             HHHHH
Q 027894          168 TEVLT  172 (217)
Q Consensus       168 ~~i~~  172 (217)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=2.7e-27  Score=168.95  Aligned_cols=151  Identities=21%  Similarity=0.378  Sum_probs=119.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|.+|||||||++++.+... ....++.+...  ..+.+.  .+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999874 33445555443  334344  3679999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHH
Q 027894           95 VTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      ++++.++.....++..+.... ..+.|+++|+||+|+....  ..++......     ...++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888777765543 3679999999999986532  3333333322     2346799999999999999999


Q ss_pred             HHHH
Q 027894          169 EVLT  172 (217)
Q Consensus       169 ~i~~  172 (217)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=8.9e-27  Score=171.22  Aligned_cols=155  Identities=20%  Similarity=0.329  Sum_probs=124.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|++|||||||++++.+..+. .+.++.+..  ...+.+++  ..+.+||+||+..+...+..+++.+|++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988764 344454433  33444554  678999999999988889999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH----------------cCCcEEE
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER----------------ENTFFME  154 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~  154 (217)
                      |+|+++..+++....++..+..... .+.|+++++||+|+..  .+..++...+...                ..+.+++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM  170 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence            9999999999888777777765432 5799999999999864  4566666666542                2246899


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 027894          155 TSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~  173 (217)
                      +||++++|++++|+++.+.
T Consensus       171 ~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         171 CSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             eEecCCCChHHHHHHHHhh
Confidence            9999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=1.8e-26  Score=164.73  Aligned_cols=151  Identities=21%  Similarity=0.332  Sum_probs=113.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|++++|||||+++|....+.. ..++.+.+..  .+..  ....+.+|||||++.+...+..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998877643 3455544432  3333  34789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhc-cCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHH
Q 027894           95 VTRHVTFENVERWLKELRG-HTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      ++++.++.....++..+.. ....+.|+++|+||+|+.+..  ...+......     ..+.+++++||+++.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9999888776665544432 222579999999999986432  2233322221     1235699999999999999999


Q ss_pred             HHHH
Q 027894          169 EVLT  172 (217)
Q Consensus       169 ~i~~  172 (217)
                      ++.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=2.7e-26  Score=166.25  Aligned_cols=158  Identities=28%  Similarity=0.460  Sum_probs=127.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|..|||||||++++..+.... ..||.+..  ...+.+.+  ..+.+||.+|+..++..|..++.++|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            3678999999999999999999998765433 44555544  44555555  6789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH------cCCcEEEeccCCCCC
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER------ENTFFMETSALESMN  162 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~  162 (217)
                      |||+|.++.+.+.+....+..+..... .+.|+++++||.|+.+  ....++.......      ..+.++.+||.+|+|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            999999999988888777766655432 6899999999999865  4555656554432      345599999999999


Q ss_pred             HHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQI  174 (217)
Q Consensus       163 v~~~~~~i~~~~  174 (217)
                      +.+.|+||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=2.9e-26  Score=167.58  Aligned_cols=156  Identities=17%  Similarity=0.275  Sum_probs=121.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|||||||+++|.+..+.. +.++.+..  ...+.+.+  +++.+||+||++.+...+..++.++|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            445999999999999999999999886643 23443332  23333443  77899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH------------cCCcEEEecc
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAER------------ENTFFMETSA  157 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  157 (217)
                      +|+|++++.++.....++..+.... ..+.|+++|+||+|+..  .++.+++......            ....++++||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            9999999999988887777665432 25789999999999864  4555555544321            1234999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027894          158 LESMNVENAFTEVLTQ  173 (217)
Q Consensus       158 ~~~~~v~~~~~~i~~~  173 (217)
                      ++++|++++++||.++
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=4.2e-28  Score=167.82  Aligned_cols=175  Identities=33%  Similarity=0.567  Sum_probs=163.7

Q ss_pred             cCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc
Q 027894            5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus         5 ~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      ..+.+.+..+|++++|..++||||+|++++.+-|...+..+.+.++....+.+....++..+||++|+++|..+..+|++
T Consensus        12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr   91 (246)
T KOG4252|consen   12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR   91 (246)
T ss_pred             CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            44567788999999999999999999999999999999999999998888888887788999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      .+.+.++||+.+|..||+....|++.+.... .++|.++|-||+|+.++.++...+...++++....+|-+|++...|+-
T Consensus        92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~  170 (246)
T KOG4252|consen   92 GAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM  170 (246)
T ss_pred             cccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence            9999999999999999999999999998877 689999999999999888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 027894          165 NAFTEVLTQIYHVVSR  180 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~  180 (217)
                      .+|..+.+.+.++..+
T Consensus       171 ~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  171 HVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998887765

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=1.3e-25  Score=163.49  Aligned_cols=154  Identities=20%  Similarity=0.251  Sum_probs=113.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc-------CCCCCCc------ccceeEEEEEE--EE---CCeEEEEEEEeCCCchhhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE-------FSLESKS------TIGVEFATRSI--RV---EDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~l~Dt~G~~~~~   76 (217)
                      +|+++|++++|||||+++|++..       +...+.+      +.+.++.....  .+   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       1111111      11233333222  22   5567889999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC---cEE
Q 027894           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT---FFM  153 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  153 (217)
                      ..+..+++.+|++++|+|+++..+++....|.....    .++|+++|+||+|+.+..  ......++++..++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            999999999999999999999877776666654332    468999999999985421  22233455555565   389


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 027894          154 ETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       154 ~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      ++||++|+|++++|+++.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=1.3e-25  Score=159.78  Aligned_cols=151  Identities=23%  Similarity=0.397  Sum_probs=119.8

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV   95 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   95 (217)
                      |+++|++|+|||||+++|.+..+...+.++.+.....  +..+.  +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999999999888887777765543  33333  7899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHH
Q 027894           96 TRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        96 ~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++..++.....++..+.... ..+.|+++|+||+|+.+..  ...+.....     ....++++++|++++.|+++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            99998888777766665432 2578999999999986532  222222121     123467899999999999999999


Q ss_pred             HHH
Q 027894          170 VLT  172 (217)
Q Consensus       170 i~~  172 (217)
                      |.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=9.2e-26  Score=162.55  Aligned_cols=156  Identities=20%  Similarity=0.225  Sum_probs=109.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh---------hhhhHhhhc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY---------RAITSAYYR   84 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~~   84 (217)
                      .+|+++|.+|+|||||+++|.+..+.....+..+.......+..  ..+.+.+|||||+...         .........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            37999999999999999999998764332222222232222222  3478999999997321         011112223


Q ss_pred             CCcEEEEEEeCCChhhH--HHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894           85 GAVGALLVYDVTRHVTF--ENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN  162 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      .+|++++|+|+++..++  +....|+..+.... .+.|+++|+||+|+........  ...+....+++++++||+++.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence            46899999999987653  55566777776543 4799999999999965333222  4455555678899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQI  174 (217)
Q Consensus       163 v~~~~~~i~~~~  174 (217)
                      ++++|+++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=4.3e-25  Score=150.73  Aligned_cols=164  Identities=18%  Similarity=0.328  Sum_probs=130.3

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      +..+..++|+++|..||||||++++|.+.... ...||.+++..  ++.+.+  +++.+||.+|+..++..|..|+...|
T Consensus        11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~gf~Ik--tl~~~~--~~L~iwDvGGq~~lr~~W~nYfestd   85 (185)
T KOG0073|consen   11 KLKEREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLGFQIK--TLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTD   85 (185)
T ss_pred             HhhhheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccceeeE--EEEecc--eEEEEEEcCCcchhHHHHHHhhhccC
Confidence            33455899999999999999999999998743 33466555444  443444  78999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHH------HHHHHHHHcCCcEEEeccCCC
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTE------DAKAFAERENTFFMETSALES  160 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~------~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      ++|+|+|.+|+..+++....+..+.... -.+.|++++.||.|+..  .+..+      ...++++...++++.||+.+|
T Consensus        86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tg  163 (185)
T KOG0073|consen   86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTG  163 (185)
T ss_pred             eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEecccc
Confidence            9999999999999888776666554422 26789999999999973  22222      234555667899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 027894          161 MNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~~~~  178 (217)
                      +++.+-++|+++.+.+..
T Consensus       164 e~l~~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  164 EDLLEGIDWLCDDLMSRL  181 (185)
T ss_pred             ccHHHHHHHHHHHHHHHh
Confidence            999999999999988743

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=3.7e-25  Score=174.27  Aligned_cols=165  Identities=17%  Similarity=0.079  Sum_probs=123.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------YRAITSAYYRG   85 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   85 (217)
                      ...|+++|.||||||||+++|++........+..+.....-.+.+. ....+.+||+||..+       +...+...+..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            4679999999999999999999876443333444455555455442 224689999999532       22222334567


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (217)
                      ++++++|+|+++.+++++++.|...+.....  .++|+++|+||+|+.+......+....++...+.+++++||++++|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999988889999999988877643  47899999999999754444444455555566788999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027894          164 ENAFTEVLTQIYHVV  178 (217)
Q Consensus       164 ~~~~~~i~~~~~~~~  178 (217)
                      ++++++|.+.+.+..
T Consensus       317 ~eL~~~L~~~l~~~~  331 (335)
T PRK12299        317 DELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999877543

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=1.3e-25  Score=162.10  Aligned_cols=157  Identities=19%  Similarity=0.118  Sum_probs=111.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch----hhhhhhHh---hhcCCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE----RYRAITSA---YYRGAV   87 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~---~~~~~d   87 (217)
                      +|+++|.+|||||||+++|.+........+..+.......+.+.+ ...+.+|||||..    ........   .+..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            699999999999999999997654322222222222223333333 2478999999963    11122222   345699


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-cCCcEEEeccCCCCCH
Q 027894           88 GALLVYDVTRH-VTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAER-ENTFFMETSALESMNV  163 (217)
Q Consensus        88 ~ii~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v  163 (217)
                      ++++|+|++++ .+++.+..|+..+.....  .+.|+++|+||+|+.+.... .+....+... .+.+++++||+++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999999 789988888888876542  46899999999998654332 3344455555 3788999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          164 ENAFTEVLTQ  173 (217)
Q Consensus       164 ~~~~~~i~~~  173 (217)
                      +++|+++.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=1.9e-25  Score=165.98  Aligned_cols=158  Identities=22%  Similarity=0.180  Sum_probs=115.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch---------hhhhhhH
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE---------RYRAITS   80 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~   80 (217)
                      .+..++|+++|++|||||||++++++..+.....+..+.......+.+.+. ..+.+|||||..         .+...+ 
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            355689999999999999999999998754433333334444444444442 368999999962         122222 


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      ..+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+....     ...+...+.+++++||+++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCC
Confidence            23678999999999999988888777777776655467899999999998653221     1344456678999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027894          161 MNVENAFTEVLTQI  174 (217)
Q Consensus       161 ~~v~~~~~~i~~~~  174 (217)
                      .|+++++++|.+.+
T Consensus       191 ~gi~~l~~~L~~~~  204 (204)
T cd01878         191 EGLDELLEAIEELL  204 (204)
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=4.6e-25  Score=159.69  Aligned_cols=157  Identities=18%  Similarity=0.291  Sum_probs=116.9

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+++|++|||||||++++.+..+.. ..++.+...  ..+...+  ..+.+||+||+..+...+..+++.+|+
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            34457999999999999999999999876543 335555433  3333444  678999999999888888889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-----CCcEEEeccCCCCC
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-----NTFFMETSALESMN  162 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~  162 (217)
                      +++|+|+++..++.....++..+.... ..++|+++++||+|+....  ..++..+.....     .++++++||++++|
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g  162 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEG  162 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence            999999999988888777666554432 2579999999999985422  222222221111     12478999999999


Q ss_pred             HHHHHHHHHH
Q 027894          163 VENAFTEVLT  172 (217)
Q Consensus       163 v~~~~~~i~~  172 (217)
                      ++++|+||.+
T Consensus       163 i~~~~~~l~~  172 (173)
T cd04155         163 LQEGMNWVCK  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=1.4e-24  Score=154.14  Aligned_cols=157  Identities=38%  Similarity=0.526  Sum_probs=126.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+.+.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999997777777777777777677777668899999999999988888889999999999


Q ss_pred             EeCCCh-hhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           93 YDVTRH-VTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        93 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      +|.... .++.... .|+..+......+.|+++++||+|+.... ........+......+++++||.++.|+.++|++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999877 6666554 56666655543478999999999986533 33333334444456779999999999999999886

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=5.6e-24  Score=159.68  Aligned_cols=170  Identities=39%  Similarity=0.576  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|+.|||||||+++|.+..+...+.++.+..+...........+++.+|||+|++.++..+..++..+++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            38999999999999999999999999988888887777777776665578999999999999999999999999999999


Q ss_pred             EeCCC-hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc------------cCCHHHHHHHHHHc---CCcEEEec
Q 027894           93 YDVTR-HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC------------AVSTEDAKAFAERE---NTFFMETS  156 (217)
Q Consensus        93 ~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~S  156 (217)
                      +|..+ ..+++....|...+........|+++++||+|+....            ..............   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 5555666889988887775679999999999997643            22222222222222   23389999


Q ss_pred             cC--CCCCHHHHHHHHHHHHHHHhhccc
Q 027894          157 AL--ESMNVENAFTEVLTQIYHVVSRKA  182 (217)
Q Consensus       157 a~--~~~~v~~~~~~i~~~~~~~~~~~~  182 (217)
                      ++  .+.++.++|..+...+.+......
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~  192 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEKLV  192 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence            99  999999999999999987665443

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.7e-24  Score=155.18  Aligned_cols=151  Identities=19%  Similarity=0.135  Sum_probs=104.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc---CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      .|+++|.+|+|||||+++|.+..   +.....++.+.+.....+.+.. ...+.+|||||++.+......+++.+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            68999999999999999998643   2222223334444444444442 3578999999999887777778889999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCHHHHHHHHHH---cCCcEEEeccCCCCCH
Q 027894           92 VYDVTR---HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VSTEDAKAFAER---ENTFFMETSALESMNV  163 (217)
Q Consensus        92 v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v  163 (217)
                      |+|+++   ..+.+.+    ..+...  ...|+++++||+|+.....  ...++..+....   .+.+++++||++++|+
T Consensus        81 V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  154 (164)
T cd04171          81 VVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI  154 (164)
T ss_pred             EEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence            999987   3333222    222211  2248999999999865321  112334444444   4678999999999999


Q ss_pred             HHHHHHHHH
Q 027894          164 ENAFTEVLT  172 (217)
Q Consensus       164 ~~~~~~i~~  172 (217)
                      +++|+.+..
T Consensus       155 ~~l~~~l~~  163 (164)
T cd04171         155 EELKEYLDE  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=1.1e-24  Score=152.72  Aligned_cols=134  Identities=23%  Similarity=0.240  Sum_probs=99.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch-----hhhhhhHhhhcCCcEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-----RYRAITSAYYRGAVGA   89 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~i   89 (217)
                      ||+++|.+|+|||||+++|.+..+.  +.++.+.       .+..     .+|||||+.     .+.... ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYND-----GAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            8999999999999999999987652  2222221       1222     689999972     233333 357899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVENAFT  168 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~  168 (217)
                      ++|||++++.++.. ..|...+      ..|+++|+||+|+.+ .....++..++++..+. +++++||+++.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999988754 2343322      248999999999864 33456667777777776 799999999999999998


Q ss_pred             HHH
Q 027894          169 EVL  171 (217)
Q Consensus       169 ~i~  171 (217)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=1.2e-23  Score=151.40  Aligned_cols=157  Identities=18%  Similarity=0.212  Sum_probs=109.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      .|+++|.+|+|||||+++|....+......+.+.+.....+... .....+.+|||||++.+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999988766544444333333334333 13467899999999999888888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC-HHHHHHHHH------HcCCcEEEeccCCCCCHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS-TEDAKAFAE------RENTFFMETSALESMNVENA  166 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      |+++....+.... +..+..   .+.|+++|+||+|+....... ......+..      ...++++++|+++++|+.++
T Consensus        82 d~~~~~~~~~~~~-~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTIEA-IKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHHHH-HHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            9988543222221 222322   468999999999986422111 111111111      12367999999999999999


Q ss_pred             HHHHHHHHH
Q 027894          167 FTEVLTQIY  175 (217)
Q Consensus       167 ~~~i~~~~~  175 (217)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=2.3e-23  Score=146.69  Aligned_cols=153  Identities=49%  Similarity=0.761  Sum_probs=121.2

Q ss_pred             EEcCCCCChHHHHHHHhhCcC-CCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC
Q 027894           18 LIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        18 vvG~~~~GKtsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                      ++|++|+|||||++++.+... .....++. ................+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999887 44444444 6666667766677889999999999888888888999999999999999


Q ss_pred             ChhhHHHHHHHH-HHHhccCCCCCcEEEEEeCCCCCCcccCCHHH-HHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           97 RHVTFENVERWL-KELRGHTDSNIVIMLVGNKADLRHLCAVSTED-AKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        97 ~~~s~~~~~~~~-~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      ++.++..+..|. .........+.|+++++||+|+.......... ..........+++++|+.++.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999988887762 22233334789999999999986543333222 3455556678999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=1.1e-23  Score=167.11  Aligned_cols=155  Identities=23%  Similarity=0.180  Sum_probs=114.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc---------hhhhhhhHh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------ERYRAITSA   81 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~   81 (217)
                      +..++|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|.         +.+...+ .
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            45589999999999999999999998754333344455666666666432 47899999996         2333332 3


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCC
Q 027894           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESM  161 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (217)
                      .+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+....     ..... .....+++++||+++.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~  338 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGE  338 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCC
Confidence            47899999999999999888877766666655444578999999999985421     11111 1223468999999999


Q ss_pred             CHHHHHHHHHHH
Q 027894          162 NVENAFTEVLTQ  173 (217)
Q Consensus       162 ~v~~~~~~i~~~  173 (217)
                      |+++++++|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=1.6e-23  Score=164.84  Aligned_cols=160  Identities=19%  Similarity=0.128  Sum_probs=117.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhhhHh---hhcC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAITSA---YYRG   85 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~   85 (217)
                      ...|+++|.+|||||||+++|++........+..+.....-.+.+++ ...+.+||+||...    ...+...   .+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            46899999999999999999998764333333334444444454443 35689999999632    1122223   3457


Q ss_pred             CcEEEEEEeCCCh---hhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894           86 AVGALLVYDVTRH---VTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus        86 ~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      ++++++|+|+++.   .+++++..|...+.....  .+.|+++|+||+|+.+... ..+..+.+....+.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999987   678888888887766532  4789999999999865422 234445566666788999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027894          161 MNVENAFTEVLTQI  174 (217)
Q Consensus       161 ~~v~~~~~~i~~~~  174 (217)
                      +|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=1.9e-24  Score=160.16  Aligned_cols=153  Identities=22%  Similarity=0.226  Sum_probs=104.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC-----------chhhhhhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG-----------QERYRAIT   79 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~   79 (217)
                      ...++|+++|.+|+|||||+++|.+..+.....++  .+.....+.+.    .+.+|||||           ++.+...+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            45689999999999999999999998765444443  33333333333    489999999           56666666


Q ss_pred             Hhhhc----CCcEEEEEEeCCChhhH-H---------HHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHH
Q 027894           80 SAYYR----GAVGALLVYDVTRHVTF-E---------NVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFA  145 (217)
Q Consensus        80 ~~~~~----~~d~ii~v~d~~~~~s~-~---------~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  145 (217)
                      ..++.    .++++++|+|.+....+ +         ....+...+..   .++|+++|+||+|+.+..   .+...++.
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~~  154 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DEVLDEIA  154 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HHHHHHHH
Confidence            55554    35788888887653221 0         01112222222   478999999999986432   33445555


Q ss_pred             HHcCC---------cEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          146 ERENT---------FFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       146 ~~~~~---------~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      ...++         +++++||+++ |++++|++|.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            55554         5899999999 999999999887643

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=2.1e-23  Score=148.66  Aligned_cols=148  Identities=16%  Similarity=0.140  Sum_probs=110.4

Q ss_pred             EEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh------hhHhhhc--CCcEE
Q 027894           18 LIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA------ITSAYYR--GAVGA   89 (217)
Q Consensus        18 vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~i   89 (217)
                      ++|.+|+|||||++++.+..+.....++.+.+.....+.+++  ..+.+|||||+..+..      ++..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999999875554445555655555666665  5789999999866543      3455554  89999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++|+|+.++.+..   .+...+..   .++|+++|+||+|+.+...... ....+....+++++++||+++.|+++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998865432   33333333   4689999999999975443333 345666777899999999999999999999


Q ss_pred             HHHHH
Q 027894          170 VLTQI  174 (217)
Q Consensus       170 i~~~~  174 (217)
                      +.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            98764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.91  E-value=9.1e-24  Score=141.69  Aligned_cols=155  Identities=24%  Similarity=0.394  Sum_probs=126.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+++.++|-.+||||||++....+.+.....++.|+...    .+....+.+.+||.||+..++..|..|.+.+++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            578999999999999999999999988888888875443    3455568899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc--------CCcEEEeccCCCCCH
Q 027894           93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE--------NTFFMETSALESMNV  163 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v  163 (217)
                      +|+.+++.++.....+..+.... -.++|+++.+||.|++..  ....   .+..+.        .+..|.+|+++..++
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~---~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKI---ALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHH---HHHHHhCccccccceEEEEEEEEcCCccH
Confidence            99999998887766555554433 378999999999999762  2222   223333        355899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          164 ENAFTEVLTQIYH  176 (217)
Q Consensus       164 ~~~~~~i~~~~~~  176 (217)
                      +.+.+|++++--.
T Consensus       171 d~~~~Wli~hsk~  183 (186)
T KOG0075|consen  171 DITLDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999987643

>TIGR00436 era GTP-binding protein Era

Probab=99.91  E-value=2.9e-23  Score=160.30  Aligned_cols=154  Identities=20%  Similarity=0.132  Sum_probs=106.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh--------hhhhHhhhcCC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY--------RAITSAYYRGA   86 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~~~   86 (217)
                      +|+++|.+|||||||+|+|++..+...+....++......+...+ ..++.+|||||....        ......++..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            689999999999999999999876543332222222222332222 256899999996421        12234567899


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVEN  165 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~  165 (217)
                      |++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+.+.. ...+....+....++ +++++||++|.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999999877654  344444433   468999999999985321 122333444444444 799999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          166 AFTEVLTQIY  175 (217)
Q Consensus       166 ~~~~i~~~~~  175 (217)
                      +++++.+.+.
T Consensus       155 L~~~l~~~l~  164 (270)
T TIGR00436       155 LAAFIEVHLP  164 (270)
T ss_pred             HHHHHHHhCC
Confidence            9999988763

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.1e-23  Score=146.03  Aligned_cols=159  Identities=19%  Similarity=0.351  Sum_probs=129.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ....+|+++|--++||||++.+|..++.-.. .||.|.....  +.+.  ++.+.+||..|+++++..|..|+++.+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~--v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET--VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE--EEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            4578999999999999999999998887555 5776655444  4444  588999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----cCCcEEEeccCCCCCHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----ENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~  164 (217)
                      ||+|.+|+.-+..++..+..+..... .+.|+++++||.|++.  ..+..++......     ..+.+..++|.+|+|+.
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            99999999999988777766666554 7899999999999976  3444444433332     34568889999999999


Q ss_pred             HHHHHHHHHHHH
Q 027894          165 NAFTEVLTQIYH  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      +.++|+.+.+..
T Consensus       168 egl~wl~~~~~~  179 (181)
T KOG0070|consen  168 EGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987753

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=1.7e-23  Score=154.18  Aligned_cols=149  Identities=17%  Similarity=0.170  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh--CcCCCCC------------CcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR--NEFSLES------------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAIT   79 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   79 (217)
                      -+|+++|.+++|||||+++|+.  ..+....            ..+.+.+.......+......+.+|||||++.|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3899999999999999999997  4443322            1223444444444455556789999999999999999


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc-CCHHHHHHHHH-------HcCCc
Q 027894           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA-VSTEDAKAFAE-------RENTF  151 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  151 (217)
                      ..+++.+|++++|+|+++.. +.....++..+..   .+.|+++|+||+|+..... ...++..++..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998743 2333334444332   4689999999999864221 12334444442       23678


Q ss_pred             EEEeccCCCCCHHHH
Q 027894          152 FMETSALESMNVENA  166 (217)
Q Consensus       152 ~~~~Sa~~~~~v~~~  166 (217)
                      ++++||++|.|+.+.
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999887543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=1.4e-23  Score=146.92  Aligned_cols=148  Identities=20%  Similarity=0.217  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh------hhhhhHhhh--cC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER------YRAITSAYY--RG   85 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~~~~--~~   85 (217)
                      ++|+++|.||+|||||+|+|++........+..+.+.....+.+.+  ..+.++|+||.-.      .......++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999986665667777777777777777  5689999999311      122333333  68


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      .|++++|+|+++.+   .--.+...+..   .++|+++++||+|......+.. +...+.+..++|++++||++++|+++
T Consensus        79 ~D~ii~VvDa~~l~---r~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHH---HHHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999998743   22233333333   5699999999999865433332 35666777899999999999999999


Q ss_pred             HHHHH
Q 027894          166 AFTEV  170 (217)
Q Consensus       166 ~~~~i  170 (217)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=2.6e-23  Score=150.78  Aligned_cols=155  Identities=23%  Similarity=0.199  Sum_probs=107.2

Q ss_pred             EEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh----hhh---hHhhhcCCcEEE
Q 027894           18 LIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY----RAI---TSAYYRGAVGAL   90 (217)
Q Consensus        18 vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~d~ii   90 (217)
                      ++|++|||||||+++|.+........+..+.......+.+.+ ...+.+|||||....    ...   ....++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999865222222222333333343441 356899999996321    112   234567899999


Q ss_pred             EEEeCCCh------hhHHHHHHHHHHHhccCC-------CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894           91 LVYDVTRH------VTFENVERWLKELRGHTD-------SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus        91 ~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      +|+|+++.      .+++.+..|...+.....       .+.|+++|+||+|+..................+.+++++||
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999988      577777777776654432       36899999999999654333332223444445678999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027894          158 LESMNVENAFTEVLTQ  173 (217)
Q Consensus       158 ~~~~~v~~~~~~i~~~  173 (217)
                      +++.|++++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-22  Score=136.91  Aligned_cols=172  Identities=24%  Similarity=0.341  Sum_probs=142.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCC--CCcccceeEEEEEEEE-CCeEEEEEEEeCCCchhh-hhhhHhhhcCCc
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE--SKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQERY-RAITSAYYRGAV   87 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d   87 (217)
                      ...||+++|..++|||+++..++-++..+.  ..+|....+ ...+.. .+..-.+.++||.|.... ..+..+|+.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            357999999999999999999988765553  335554333 333333 445567899999997655 677889999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      ++++||+..+++||+.++.+...|..... .++|+++.+||+|+.+..++..+.+..|++...+.++++++.+...+-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999998877777777665 77999999999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccC
Q 027894          167 FTEVLTQIYHVVSRKALD  184 (217)
Q Consensus       167 ~~~i~~~~~~~~~~~~~~  184 (217)
                      |..+...+.+.+.+....
T Consensus       167 f~~l~~rl~~pqskS~Fp  184 (198)
T KOG3883|consen  167 FTYLASRLHQPQSKSTFP  184 (198)
T ss_pred             HHHHHHhccCCcccccCc
Confidence            999999988777655443

>cd01889 SelB_euk SelB subfamily

Probab=99.90  E-value=1.2e-22  Score=149.50  Aligned_cols=159  Identities=18%  Similarity=0.114  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC----cCCCCC---CcccceeEEEEEEEEC------------CeEEEEEEEeCCCchh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN----EFSLES---KSTIGVEFATRSIRVE------------DKIVKAQIWDTAGQER   74 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~----~~~~~~---~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~   74 (217)
                      ++|+++|++|+|||||+++|+..    .+....   .+..+.......+.+.            .....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    111111   1122223222222222            2357899999999876


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCHHHHHHHHH------
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VSTEDAKAFAE------  146 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~------  146 (217)
                      +..........+|++++|+|+++.......+.+. ....   .+.|+++++||+|+.....  ...++..+...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            6444445567789999999998865444433322 1111   2579999999999863221  11222222111      


Q ss_pred             -HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          147 -RENTFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       147 -~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                       ..+++++++||++++|++++++++.+.+..
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence             135789999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=3.7e-22  Score=141.89  Aligned_cols=146  Identities=22%  Similarity=0.245  Sum_probs=106.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhHhhhc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA--------ITSAYYR   84 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~   84 (217)
                      ++|+++|++|+|||||++++.+..... ...++.+.......+...+  .++.+|||||...+..        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876422 2223333334344444443  5789999999644321        2234567


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      .+|++++|+|++++.+......+..      ..+.|+++|+||+|+.+....       .....+.+++++||+++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998887766544433      257999999999998653322       334456789999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          165 NAFTEVLTQI  174 (217)
Q Consensus       165 ~~~~~i~~~~  174 (217)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=3.7e-22  Score=162.77  Aligned_cols=155  Identities=19%  Similarity=0.236  Sum_probs=116.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhH
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA--------ITS   80 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~   80 (217)
                      ....++|+++|.+|+|||||+|+|++..... ...++.+.+.....+.+++  ..+.+|||||...+..        ...
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            3456899999999999999999999875422 2234445566666666766  4578999999754322        124


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      .+++.+|++++|+|++++.+++..  |+..+..   .+.|+++|+||+|+...      ....++...+.+++.+||++ 
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-  345 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-  345 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence            577899999999999998887665  6555532   46899999999998542      12344556678899999997 


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 027894          161 MNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~~~~  178 (217)
                      .|++++|+.+.+.+.+..
T Consensus       346 ~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       346 LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            699999999999887765

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=7.1e-22  Score=159.40  Aligned_cols=160  Identities=20%  Similarity=0.178  Sum_probs=117.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhhhHhh---hcCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAITSAY---YRGA   86 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~~   86 (217)
                      ..|+++|.+|||||||+++|++........+..+.....-.+.+.+ ...+.+||+||...    ...+...+   +..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            4899999999999999999998764433334434444444444431 25689999999532    22233333   4569


Q ss_pred             cEEEEEEeCCCh---hhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCC
Q 027894           87 VGALLVYDVTRH---VTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESM  161 (217)
Q Consensus        87 d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (217)
                      +++++|+|+++.   +++++...|...+.....  .++|++||+||+|+..    ..+....+.+..+.+++++||++++
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999865   677788888888776543  4789999999999843    2344556666667889999999999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 027894          162 NVENAFTEVLTQIYHVV  178 (217)
Q Consensus       162 ~v~~~~~~i~~~~~~~~  178 (217)
                      |+++++++|.+.+.+..
T Consensus       314 GI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        314 GLDELLYAVAELLEETP  330 (424)
T ss_pred             CHHHHHHHHHHHHHhCc
Confidence            99999999998887654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=7.8e-23  Score=139.07  Aligned_cols=114  Identities=35%  Similarity=0.599  Sum_probs=88.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCC--CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFS--LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      ||+|+|++|||||||+++|.+....  .......+.+..............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999999876  12233444555555666677766799999999998888888789999999999


Q ss_pred             EeCCChhhHHHHHHH---HHHHhccCCCCCcEEEEEeCCC
Q 027894           93 YDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~iiv~nK~D  129 (217)
                      ||++++.|++.+..+   +..+.... .+.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            999999999987554   55555433 5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=1.9e-22  Score=147.77  Aligned_cols=154  Identities=19%  Similarity=0.202  Sum_probs=110.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCc----------------ccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKS----------------TIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      +|+++|.+|+|||||+++|++.........                ..+.......+...  ...+.+|||||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            589999999999999999999876554311                11222222223233  467899999999988888


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHHHHHHHH---------
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDAKAFAER---------  147 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~---------  147 (217)
                      +..+++.+|++++|+|+.++.+.... .++..+..   .+.|+++++||+|+..+...  ..+...+....         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            88899999999999999887654333 33333332   57999999999998652211  12233333332         


Q ss_pred             -----cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          148 -----ENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       148 -----~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                           ...+++++||+++.|++++|+++.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 356799999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=3.4e-22  Score=165.26  Aligned_cols=162  Identities=22%  Similarity=0.199  Sum_probs=114.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhhhhh-
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYRAIT-   79 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~-   79 (217)
                      ..++|+++|.+|+|||||+++|++.... ....++.+.+.....+.+++.  .+.+|||||.          +.+.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4699999999999999999999998753 233344555555556666664  4679999994          3333322 


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHHHH-HHHHcCCcEEEec
Q 027894           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDAKA-FAERENTFFMETS  156 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~S  156 (217)
                      ..+++.+|++++|+|++++.+++++. ++..+..   .+.|+++|+||+|+.+....  ...+... +.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            34578999999999999998887764 3344432   57899999999999642111  1111211 2222347899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhh
Q 027894          157 ALESMNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       157 a~~~~~v~~~~~~i~~~~~~~~~  179 (217)
                      |++|.|++++|+.+.+.+.....
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~~  386 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWDT  386 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999887765443

>PRK15494 era GTPase Era; Provisional

Probab=99.90  E-value=2.3e-22  Score=159.45  Aligned_cols=156  Identities=24%  Similarity=0.344  Sum_probs=106.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchh-hhh-------hhHh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQER-YRA-------ITSA   81 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~-------~~~~   81 (217)
                      +..++|+++|.+|||||||+++|++..+..... +..+.......+..++  .++.+|||||... +..       ....
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            345799999999999999999999987753221 2222233333444444  4689999999732 211       1223


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC--CcEEEeccC
Q 027894           82 YYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN--TFFMETSAL  158 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  158 (217)
                      .+..+|++++|+|..+  ++.... .|+..+..   .+.|.++|+||+|+.+.   ...+..+++....  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            4679999999999765  344443 34455543   34677889999998642   2344555555443  579999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027894          159 ESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~~~~  176 (217)
                      +|.|++++|++|.+.+.+
T Consensus       200 tg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             CccCHHHHHHHHHHhCCC
Confidence            999999999999887654

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.90  E-value=2.7e-22  Score=142.93  Aligned_cols=142  Identities=15%  Similarity=0.174  Sum_probs=101.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch----hhhhhhHhhhcCCcEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE----RYRAITSAYYRGAVGAL   90 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~ii   90 (217)
                      +|+++|.+|+|||||++++.+... . ...+       ..+.+...    .+|||||..    .+.......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            799999999999999999876531 1 1111       11222222    269999962    22222234478999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC--cEEEeccCCCCCHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT--FFMETSALESMNVENAFT  168 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~~  168 (217)
                      +|+|+++..++.  ..|+..+.    .+.|+++++||+|+.+   ...+...+++...++  +++++||++++|++++|+
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~~----~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDIG----VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCccccc--CHHHHhcc----CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            999999887652  23333321    4678999999999854   345666777777775  899999999999999999


Q ss_pred             HHHHHHHHHh
Q 027894          169 EVLTQIYHVV  178 (217)
Q Consensus       169 ~i~~~~~~~~  178 (217)
                      .+.+.+.+..
T Consensus       141 ~l~~~~~~~~  150 (158)
T PRK15467        141 YLASLTKQEE  150 (158)
T ss_pred             HHHHhchhhh
Confidence            9988776544

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.90  E-value=5.1e-22  Score=167.23  Aligned_cols=159  Identities=18%  Similarity=0.220  Sum_probs=117.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc-------CCCCCCc------ccceeEEEEE--EEE---CCeEEEEEEEeCCCchh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNE-------FSLESKS------TIGVEFATRS--IRV---EDKIVKAQIWDTAGQER   74 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~l~Dt~G~~~   74 (217)
                      .-+|+++|+.++|||||+++|+...       +...+..      ..+.++....  +.+   ++..+.+.+|||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3589999999999999999998752       1111211      1234444333  323   45568899999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC---c
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT---F  151 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  151 (217)
                      |...+..++..+|++++|+|+++..+.+....|...+.    .+.|+++|+||+|+....  ......++....++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99899999999999999999999877777766655443    468999999999986421  12223445555555   3


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894          152 FMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       152 ~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                      ++++||++|.|++++|++|.+.+...
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            89999999999999999998877543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=5.6e-22  Score=161.97  Aligned_cols=165  Identities=15%  Similarity=0.094  Sum_probs=116.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhh---hHhhhcC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAI---TSAYYRG   85 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~---~~~~~~~   85 (217)
                      ...|+|+|.+|||||||+++|++........+..+.....-.+.+.+  ..+.+||+||...    ...+   ....+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            57899999999999999999998765443334444555555555555  5789999999421    1111   1224577


Q ss_pred             CcEEEEEEeCCC----hhhHHHHHHHHHHHhccC-----------CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC
Q 027894           86 AVGALLVYDVTR----HVTFENVERWLKELRGHT-----------DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT  150 (217)
Q Consensus        86 ~d~ii~v~d~~~----~~s~~~~~~~~~~l~~~~-----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  150 (217)
                      +|++++|+|+++    .+.++++..+...+..+.           ..+.|+++|+||+|+.+.... .+.........++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence            999999999985    345555555555554332           146899999999998643322 2223333445678


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894          151 FFMETSALESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       151 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      +++++||++++|+++++++|.+.+...+..
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~  345 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEARAA  345 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence            999999999999999999999998876643

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=3.1e-22  Score=162.34  Aligned_cols=162  Identities=24%  Similarity=0.196  Sum_probs=114.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh--hhh------hHhhhc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY--RAI------TSAYYR   84 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~------~~~~~~   84 (217)
                      .++|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|..+.  ...      +...+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            368999999999999999999997765434444455555555655442 25789999997321  111      223468


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCH
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNV  163 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  163 (217)
                      .+|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.....   ....  ....+.+ ++.+||++|+|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence            899999999999998887776555555444435799999999999854211   1111  1123455 588999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 027894          164 ENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       164 ~~~~~~i~~~~~~~~~~  180 (217)
                      ++++++|.+.+......
T Consensus       351 deL~e~I~~~l~~~~~~  367 (426)
T PRK11058        351 PLLFQALTERLSGEVAQ  367 (426)
T ss_pred             HHHHHHHHHHhhhccEE
Confidence            99999999998655433

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=9.3e-23  Score=138.14  Aligned_cols=167  Identities=28%  Similarity=0.535  Sum_probs=145.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      -.-.++|.++|.+..|||||+-.+.++.+...+..+.|..+..+.+.+.+..+.+.+||..|++++.....-...++-++
T Consensus        17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI   96 (205)
T KOG1673|consen   17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI   96 (205)
T ss_pred             cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence            34579999999999999999999999999888889999999999999999999999999999999988888888899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC-----cccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH-----LCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      +|+||++.+.++..+..|+.+.+.....-+| |+||+|.|.--     ..+.....++.+++-.+++++++|+..+.|+.
T Consensus        97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~  175 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ  175 (205)
T ss_pred             EEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence            9999999999999999999999887755555 66899999731     11222344667788899999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          165 NAFTEVLTQIYHV  177 (217)
Q Consensus       165 ~~~~~i~~~~~~~  177 (217)
                      .+|.-++..++..
T Consensus       176 KIFK~vlAklFnL  188 (205)
T KOG1673|consen  176 KIFKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999888754

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=4e-22  Score=163.35  Aligned_cols=149  Identities=22%  Similarity=0.219  Sum_probs=112.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh--------hHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI--------TSAY   82 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~   82 (217)
                      ..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++  ..+.+|||||.+.+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            4589999999999999999999997653 23334444555556666665  56899999997543221        2346


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894           83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      +..+|++++|+|++++.+++....|..      ..+.|+++|+||+|+.......        ...+.+++++||+++.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999999888776544433      2578999999999986432211        33467799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQIYH  176 (217)
Q Consensus       163 v~~~~~~i~~~~~~  176 (217)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=3.7e-22  Score=141.95  Aligned_cols=146  Identities=21%  Similarity=0.126  Sum_probs=100.3

Q ss_pred             EEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhHhhhcCCc
Q 027894           17 VLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA--------ITSAYYRGAV   87 (217)
Q Consensus        17 ~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d   87 (217)
                      +++|.+|+|||||+++|.+..... ...+..+.+.........+  ..+.+|||||...+..        .+...++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999875321 1222223333333444444  5789999999766432        3345678899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~  166 (217)
                      ++++|+|..++.+.... .+...+..   .+.|+++|+||+|+.+....     .......+. +++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999876554432 22233322   35899999999998653221     223334555 7899999999999999


Q ss_pred             HHHHHHH
Q 027894          167 FTEVLTQ  173 (217)
Q Consensus       167 ~~~i~~~  173 (217)
                      |+++.+.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=6.4e-22  Score=163.67  Aligned_cols=155  Identities=23%  Similarity=0.216  Sum_probs=109.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCch--------hhhhhhHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE--------RYRAITSAY   82 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~   82 (217)
                      ...+|+++|.+|||||||+++|++..... ...++.+.+.....+.+.+  ..+.+|||||.+        .+...+..+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            34799999999999999999999876432 2334444444444555555  458899999965        234445667


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894           83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      ++.+|++++|+|++++.++.. ..+...+..   .+.|+++|+||+|+...   ..+....+....+ .++++||++|.|
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~---~~~~~~~~~~g~~-~~~~iSA~~g~g  186 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERG---EADAAALWSLGLG-EPHPVSALHGRG  186 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCcc---chhhHHHHhcCCC-CeEEEEcCCCCC
Confidence            889999999999998766543 334444432   56999999999998542   1122222222223 357899999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQIYH  176 (217)
Q Consensus       163 v~~~~~~i~~~~~~  176 (217)
                      ++++|++|.+.+.+
T Consensus       187 i~eL~~~i~~~l~~  200 (472)
T PRK03003        187 VGDLLDAVLAALPE  200 (472)
T ss_pred             cHHHHHHHHhhccc
Confidence            99999999988754

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=2.2e-21  Score=162.66  Aligned_cols=153  Identities=19%  Similarity=0.236  Sum_probs=112.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ...+|+++|++++|||||+++|.+..+.....++.+.+.....+.+.+. ..+.+|||||++.|..++...+..+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            4578999999999999999999998776655454555555555555432 268999999999999888888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC---------CcEEEeccCCCCC
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN---------TFFMETSALESMN  162 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~  162 (217)
                      |+|+++...-+..+.+ ....   ..++|+++++||+|+...   ..++....+...+         .+++++||++|+|
T Consensus       165 VVda~dgv~~qT~e~i-~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       165 VVAADDGVMPQTIEAI-SHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEECCCCCCHhHHHHH-HHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            9999875433333222 2222   256899999999998542   2333333332222         4699999999999


Q ss_pred             HHHHHHHHHH
Q 027894          163 VENAFTEVLT  172 (217)
Q Consensus       163 v~~~~~~i~~  172 (217)
                      ++++|+++..
T Consensus       238 I~eLl~~I~~  247 (587)
T TIGR00487       238 IDELLDMILL  247 (587)
T ss_pred             hHHHHHhhhh
Confidence            9999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=1.1e-21  Score=145.32  Aligned_cols=160  Identities=20%  Similarity=0.177  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEEEEEEEEC---------------------------C----
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIRVE---------------------------D----   59 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~---------------------------~----   59 (217)
                      ++|+++|+.|+|||||+..+.+.....   ......+.........+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            479999999999999999997652111   111111111111111110                           1    


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--C
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--S  137 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~  137 (217)
                      ...++.+|||||++.+...+...+..+|++++|+|++++.........+..+...  ...|+++|+||+|+......  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1157899999999998888888888999999999998742111111222222221  22578999999998642211  1


Q ss_pred             HHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          138 TEDAKAFAERE---NTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       138 ~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      .++...++...   +++++++||++++|++++|++|.+.+.
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            13333444332   578999999999999999999886543

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=2.1e-21  Score=159.54  Aligned_cols=161  Identities=22%  Similarity=0.168  Sum_probs=110.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh-----------h
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA-----------I   78 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~   78 (217)
                      ...++|+++|.+|+|||||+++|++..... ...+..+.+.....+..++  ..+.+|||||......           .
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            456899999999999999999999876432 2223333334344444555  3689999999643221           1


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHH-HH----cCCcEE
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFA-ER----ENTFFM  153 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~  153 (217)
                      ...+++.+|++++|+|++++.+.++.. ++..+..   .+.|+++|+||+|+... ....++..... ..    ..++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence            234678999999999999987766653 3333332   46899999999998621 11112222221 11    247899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          154 ETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       154 ~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      ++||++|.|++++|+++.+.+....
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999998776543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=5e-21  Score=153.69  Aligned_cols=162  Identities=20%  Similarity=0.115  Sum_probs=114.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhhhcCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------YRAITSAYYRGA   86 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~   86 (217)
                      ..|+++|.||||||||+|+|++........+..+.....-.+.+.+ ...+.++||||...       ........+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            4899999999999999999998765333334444444444444432 23589999999532       111122346789


Q ss_pred             cEEEEEEeCC---ChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC--CcEEEeccCC
Q 027894           87 VGALLVYDVT---RHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN--TFFMETSALE  159 (217)
Q Consensus        87 d~ii~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  159 (217)
                      |++++|+|++   +...++....|+..+.....  .+.|+++|+||+|+.....+ .+...++....+  .+++++||++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            9999999998   45667777778777766432  46899999999998643222 233444544444  4689999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~~~~  177 (217)
                      +.|++++++.|.+.+.+.
T Consensus       318 g~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        318 GLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CcCHHHHHHHHHHHhhhC
Confidence            999999999999988654

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=5.5e-21  Score=141.02  Aligned_cols=159  Identities=18%  Similarity=0.210  Sum_probs=106.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhhhh
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYRAI   78 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~   78 (217)
                      ..+..++|+++|.+|+|||||+++|++..+.....++.+.+........   ...+.+|||||.          +.+...
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            4456799999999999999999999997644444444444433333322   257899999993          344444


Q ss_pred             hHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHHHHHHHHcCCcEE
Q 027894           79 TSAYYRGA---VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDAKAFAERENTFFM  153 (217)
Q Consensus        79 ~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~  153 (217)
                      ...++..+   +++++++|.+++.+.... .+...+..   .+.|+++++||+|+....+.  ..+++.........+++
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  172 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI  172 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            55555544   678888998876543322 11222221   46889999999998542211  12223344444467899


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 027894          154 ETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       154 ~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      ++||++++|++++++.|.+.+
T Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        173 LFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             EEEcCCCCCHHHHHHHHHHHh
Confidence            999999999999999987665

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=1.1e-20  Score=136.41  Aligned_cols=155  Identities=22%  Similarity=0.195  Sum_probs=103.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchhh----------h-hhhH
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY----------R-AITS   80 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~-~~~~   80 (217)
                      .++|+++|.+|+|||||+++|++....... .+..+.......+..++  ..+.+|||||....          . ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            478999999999999999999987643222 22222333333444454  45789999995322          1 1123


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH-HHHHc----CCcEEEe
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA-FAERE----NTFFMET  155 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~~  155 (217)
                      ..+..+|++++|+|+.++.+..... ++..+..   .+.|+++++||+|+........+.... +....    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3567899999999999987765442 3333322   468999999999986543222222222 22222    3679999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027894          156 SALESMNVENAFTEVLTQ  173 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~  173 (217)
                      ||++++|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999988753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=99.88  E-value=5.1e-21  Score=137.10  Aligned_cols=156  Identities=23%  Similarity=0.182  Sum_probs=103.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh--------hhhhHhhhc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY--------RAITSAYYR   84 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~   84 (217)
                      ..+|+++|.+|+|||||+++|.+...........+........ .......+.+|||||....        .......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999876543332222222212222 2233467899999995422        223345678


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-CCcEEEeccCCCCCH
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-NTFFMETSALESMNV  163 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v  163 (217)
                      .+|++++|+|++++.+.. ...+...+..   .+.|+++|+||+|+........+....+.... ..+++++|++++.|+
T Consensus        82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGEG-DEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCch-HHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            899999999999873211 2223333332   35889999999998643323333344444444 367999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          164 ENAFTEVLTQ  173 (217)
Q Consensus       164 ~~~~~~i~~~  173 (217)
                      +++++.|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=6.1e-21  Score=160.65  Aligned_cols=156  Identities=21%  Similarity=0.177  Sum_probs=116.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc---CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +.|+++|++++|||||+++|++..   ++.....+.+.+.....+...+  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999743   3334445556666666666655  77899999999999988888899999999


Q ss_pred             EEEeCCCh---hhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC--CHHHHHHHHHHc----CCcEEEeccCCC
Q 027894           91 LVYDVTRH---VTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV--STEDAKAFAERE----NTFFMETSALES  160 (217)
Q Consensus        91 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~  160 (217)
                      +|+|++++   .+.+.+    ..+..   .++| +++|+||+|+.+....  ..++...+....    +++++++||+++
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            99999984   333332    22222   3566 9999999999653322  233455555544    578999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 027894          161 MNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~~~~  178 (217)
                      +|++++++.+.+.+....
T Consensus       152 ~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       152 QGIGELKKELKNLLESLD  169 (581)
T ss_pred             CCchhHHHHHHHHHHhCC
Confidence            999999998887765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=4.1e-21  Score=139.80  Aligned_cols=151  Identities=21%  Similarity=0.264  Sum_probs=100.7

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhh
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYR   76 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~   76 (217)
                      +.+.+..++|+++|.+|+|||||+++|.+..+.....++.+.+.....+..+.   .+.+|||||.          +.+.
T Consensus        12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~   88 (179)
T TIGR03598        12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ   88 (179)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence            34557789999999999999999999999864333334444444333333332   5899999994          2344


Q ss_pred             hhhHhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc--cCCHHHHHHHHHHcC--
Q 027894           77 AITSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC--AVSTEDAKAFAEREN--  149 (217)
Q Consensus        77 ~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~--  149 (217)
                      .....+++   .++++++|+|.+++.+..+.. ++..+..   .+.|+++++||+|+....  ....++++......+  
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~  164 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD  164 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence            44445554   357999999998865544442 2333332   468999999999985422  112344445555443  


Q ss_pred             CcEEEeccCCCCCHH
Q 027894          150 TFFMETSALESMNVE  164 (217)
Q Consensus       150 ~~~~~~Sa~~~~~v~  164 (217)
                      +.++++||++++|++
T Consensus       165 ~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       165 PSVQLFSSLKKTGID  179 (179)
T ss_pred             CceEEEECCCCCCCC
Confidence            579999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=8.8e-21  Score=126.43  Aligned_cols=156  Identities=21%  Similarity=0.417  Sum_probs=124.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|-.++||||++..|..+.. ....+|.|+.  +..+++  +++.+.+||.+|++..+..|++|+....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFn--vetVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFN--VETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC-ccccccccee--EEEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            368999999999999999999987664 3344665544  444444  44889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----cCCcEEEeccCCCCCHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----ENTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~  165 (217)
                      |+|..+.+-++++...+..+..... .+.|+++..||.|+++  .....++..+...     ..+.+.++++.++.|+.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            9999999888777665555554443 6789999999999986  4455666655433     345689999999999999


Q ss_pred             HHHHHHHHH
Q 027894          166 AFTEVLTQI  174 (217)
Q Consensus       166 ~~~~i~~~~  174 (217)
                      -|.|+.+.+
T Consensus       169 glswlsnn~  177 (180)
T KOG0071|consen  169 GLSWLSNNL  177 (180)
T ss_pred             HHHHHHhhc
Confidence            999998765

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=5.8e-21  Score=149.27  Aligned_cols=158  Identities=22%  Similarity=0.190  Sum_probs=105.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh--------hhhhHhhhc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY--------RAITSAYYR   84 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~   84 (217)
                      .-.|+++|.+|||||||+|+|++......+....++......+... ...++.+|||||....        .......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4569999999999999999999987654433322222222222222 2367999999995321        233344678


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCCH
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMNV  163 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v  163 (217)
                      .+|++++|+|+++..+- .....+..+.   ..+.|+++|+||+|+.............+....+ .+++++||+++.|+
T Consensus        84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            89999999999883221 1222233333   2468999999999986322223334444444444 56999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027894          164 ENAFTEVLTQIY  175 (217)
Q Consensus       164 ~~~~~~i~~~~~  175 (217)
                      +++++++.+.+.
T Consensus       160 ~~L~~~L~~~l~  171 (292)
T PRK00089        160 DELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHHhCC
Confidence            999999988764

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.87  E-value=8.1e-21  Score=161.64  Aligned_cols=157  Identities=20%  Similarity=0.243  Sum_probs=113.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCccccee--EEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE--FATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....|+++|+.++|||||+++|....+.....++.+.+  .+...+...+....+.+|||||++.|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            355799999999999999999999887755443333322  222333333455789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHH-------HHHcC--CcEEEeccCC
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAF-------AEREN--TFFMETSALE  159 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~  159 (217)
                      +++|+|+++....+..+.+ ..+.   ..++|+|+++||+|+...   ..++....       ...++  ++++++||++
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            9999999885433333332 2222   256899999999998642   12222221       12233  6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQI  174 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~  174 (217)
                      |.|++++|++|....
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999999988764

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.87  E-value=5.9e-21  Score=139.97  Aligned_cols=159  Identities=23%  Similarity=0.251  Sum_probs=108.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCC------------------CcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLES------------------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER   74 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      ..+|+++|+.++|||||+.+|+........                  ....+.......+........+.++||||+..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~   82 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED   82 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence            579999999999999999999865422111                  11222333333333123447899999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc-CCHHHHH-HHHHHc----
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA-VSTEDAK-AFAERE----  148 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~-~~~~~~----  148 (217)
                      |.......+..+|++++|+|+.++......+ .+..+..   .+.|+++|+||+|+...+. ...++.. .+.+..    
T Consensus        83 f~~~~~~~~~~~D~ailvVda~~g~~~~~~~-~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~  158 (188)
T PF00009_consen   83 FIKEMIRGLRQADIAILVVDANDGIQPQTEE-HLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG  158 (188)
T ss_dssp             HHHHHHHHHTTSSEEEEEEETTTBSTHHHHH-HHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             eeecccceecccccceeeeeccccccccccc-ccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence            9888888899999999999999875543332 3333333   5688999999999862110 1112222 333333    


Q ss_pred             --CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          149 --NTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       149 --~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                        .++++++||++|.|++++++.|.+.+.
T Consensus       159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  159 EEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              357999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.87  E-value=5.8e-21  Score=143.83  Aligned_cols=162  Identities=22%  Similarity=0.143  Sum_probs=115.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc--------hhhhhhhHhhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ--------ERYRAITSAYY   83 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~   83 (217)
                      ..--|+++|.||+|||||+|++++......+....++......+...+ ..++.++||||.        +.+.......+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            345789999999999999999999998887776666666666554433 578999999993        22334455667


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCC
Q 027894           84 RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMN  162 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  162 (217)
                      ..+|+++||+|+++...- ..+..++.+..   .+.|+++++||+|..............+..... ..++++||+++.|
T Consensus        84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n  159 (298)
T COG1159          84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN  159 (298)
T ss_pred             ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence            899999999999885432 12233344433   457999999999986544322222333333333 3599999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027894          163 VENAFTEVLTQIYHVV  178 (217)
Q Consensus       163 v~~~~~~i~~~~~~~~  178 (217)
                      ++.+.+.+..++.+.-
T Consensus       160 ~~~L~~~i~~~Lpeg~  175 (298)
T COG1159         160 VDTLLEIIKEYLPEGP  175 (298)
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            9999998888776543

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=7.6e-22  Score=138.08  Aligned_cols=162  Identities=31%  Similarity=0.542  Sum_probs=143.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      -..++++++|..|.||||++++++.+.|...+.+|.+...+...+.-+...+++..|||.|++.+..+...++-+..+++
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            56899999999999999999999999999999999999988887766666799999999999999999999998999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      ++||+....++..+.+|...+.+.+ .++|+++.+||.|..+..  .....-.+..+.++.||++|++.+.|+..-|.|+
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence            9999999999999999999999888 679999999999986532  2333445566678999999999999999999999


Q ss_pred             HHHHH
Q 027894          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      ...+.
T Consensus       165 arKl~  169 (216)
T KOG0096|consen  165 ARKLT  169 (216)
T ss_pred             hhhhc
Confidence            88775

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.86  E-value=2.4e-20  Score=160.13  Aligned_cols=155  Identities=19%  Similarity=0.232  Sum_probs=112.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ......|+++|+.++|||||+++|.+..+........+.+.....+.+.+  ..+.||||||++.|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            34568899999999999999999988776554444444444444455554  5789999999999999998889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH-------HHHHcC--CcEEEeccCCC
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA-------FAEREN--TFFMETSALES  160 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~  160 (217)
                      ++|||+++...-+..+.| ..+.   ..++|+|+++||+|+...   ..+....       +...++  ++++++||++|
T Consensus       365 ILVVdAddGv~~qT~e~i-~~a~---~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAI-NHAK---AAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEEEECCCCCCHhHHHHH-HHHH---hcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            999999885432222222 2222   257899999999998542   1122211       122233  68999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027894          161 MNVENAFTEVLTQ  173 (217)
Q Consensus       161 ~~v~~~~~~i~~~  173 (217)
                      .|++++|++|...
T Consensus       438 ~GI~eLle~I~~~  450 (787)
T PRK05306        438 EGIDELLEAILLQ  450 (787)
T ss_pred             CCchHHHHhhhhh
Confidence            9999999999864

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=3.6e-20  Score=156.28  Aligned_cols=160  Identities=19%  Similarity=0.225  Sum_probs=115.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc--CC-----CCC------CcccceeEEEE--EEEE---CCeEEEEEEEeCCCch
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNE--FS-----LES------KSTIGVEFATR--SIRV---EDKIVKAQIWDTAGQE   73 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~--~~-----~~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~~   73 (217)
                      ..-+|+++|+.++|||||+.+|+...  +.     ...      ....++++...  .+.+   ++..+.+.+|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            34589999999999999999998732  11     000      01122333222  2222   4556889999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc--
Q 027894           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF--  151 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--  151 (217)
                      .|...+..++..+|++++|+|++++...+....|.....    .+.|+++|+||+|+....  ......++....++.  
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  159 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS  159 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence            999889999999999999999998776666666654432    468999999999985422  122233444444554  


Q ss_pred             -EEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894          152 -FMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       152 -~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                       ++++||+++.|+++++++|.+.+...
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhCccc
Confidence             89999999999999999999887654

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=1.6e-20  Score=158.35  Aligned_cols=146  Identities=20%  Similarity=0.174  Sum_probs=108.6

Q ss_pred             cCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh------hHhhh--cCCcEEEE
Q 027894           20 GDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI------TSAYY--RGAVGALL   91 (217)
Q Consensus        20 G~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~ii~   91 (217)
                      |.+|+|||||+|++.+..+.....++.+.+.....+.+++  .++.+|||||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999876555556666666655666655  45799999998765432      33333  47899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |+|.++.+.   ...+...+..   .+.|+++|+||+|+.+.+.+. .+.+.+.+..+++++++||++++|++++++++.
T Consensus        79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            999987532   1222223322   579999999999986544443 346778888899999999999999999999998


Q ss_pred             HHH
Q 027894          172 TQI  174 (217)
Q Consensus       172 ~~~  174 (217)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.9e-21  Score=132.22  Aligned_cols=159  Identities=22%  Similarity=0.365  Sum_probs=123.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc-------CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNE-------FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      .+.|+++|..++|||||+.++...-       -+....+|.+.......+  .  ...+.+||..|++..+++|..|+..
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHHHH
Confidence            4789999999999999998764421       112233555555444444  3  3568999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHH------HcCCcEEEeccC
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAE------RENTFFMETSAL  158 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~  158 (217)
                      ++++|+++|+++++-|+.....+..+..... .+.|+++.+||.|+.+  .....++.....      +...++.++||.
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~--~~~~~El~~~~~~~e~~~~rd~~~~pvSal  170 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN--AMEAAELDGVFGLAELIPRRDNPFQPVSAL  170 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh--hhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence            9999999999999999887766665554433 7899999999999976  334444443333      244779999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027894          159 ESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~~~~~  177 (217)
                      +|+|+++..+|++..+..+
T Consensus       171 ~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  171 TGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hcccHHHHHHHHHHHHhhc
Confidence            9999999999999998876

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.85  E-value=7.4e-20  Score=135.50  Aligned_cols=117  Identities=23%  Similarity=0.352  Sum_probs=87.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC-cEEEEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA-VGALLVY   93 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~ii~v~   93 (217)
                      +|+++|++|||||||+++|....+.....++ ............+....+.+||+||+.+++..+..+++.+ +++++|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999998776554332 2222221221123456789999999999998888889998 9999999


Q ss_pred             eCCCh-hhHHHHHHHHHHHhcc---CCCCCcEEEEEeCCCCCC
Q 027894           94 DVTRH-VTFENVERWLKELRGH---TDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        94 d~~~~-~s~~~~~~~~~~l~~~---~~~~~p~iiv~nK~D~~~  132 (217)
                      |+++. .++..+..|+..+...   ...+.|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99997 6777766655443321   125799999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd00880 Era_like Era (E

Probab=99.85  E-value=2.6e-20  Score=132.34  Aligned_cols=151  Identities=19%  Similarity=0.151  Sum_probs=103.3

Q ss_pred             EEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHhhhcCCcEE
Q 027894           18 LIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-------AITSAYYRGAVGA   89 (217)
Q Consensus        18 vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~i   89 (217)
                      ++|++|+|||||++++.+..... ......+............ ...+.+||+||.....       .....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            58999999999999999876552 2222222233333332221 3578999999965432       3445578899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH---HHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE---DAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      ++|+|..+..+..... +......   .+.|+++|+||+|+.........   .........+.+++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999987766554 3333322   57899999999998653322221   112223335678999999999999999


Q ss_pred             HHHHHHH
Q 027894          167 FTEVLTQ  173 (217)
Q Consensus       167 ~~~i~~~  173 (217)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=7.6e-20  Score=150.29  Aligned_cols=151  Identities=23%  Similarity=0.182  Sum_probs=107.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCc--------hhhhhhhHhhhcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ--------ERYRAITSAYYRG   85 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~   85 (217)
                      +|+++|.+|||||||+|+|++..... ...+..+.+.....+.+.+  ..+.+|||||.        +.+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999876432 2223334444455555555  46899999995        3445556677899


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVE  164 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  164 (217)
                      +|++++|+|..++.+..+. .+...+..   .+.|+++|+||+|+......    ..+ ....++ +++++||.++.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            9999999999876544332 22233332   46899999999998643321    222 234566 69999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027894          165 NAFTEVLTQIYH  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      ++++++.+.+.+
T Consensus       150 ~ll~~i~~~l~~  161 (429)
T TIGR03594       150 DLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHhcCc
Confidence            999999887743

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=8.4e-20  Score=150.26  Aligned_cols=146  Identities=23%  Similarity=0.203  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhHhhhc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--------YRAITSAYYR   84 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~   84 (217)
                      ++|+++|.+|||||||+++|.+..... ...+..+.+.....+.+.+  ..+.+|||||.+.        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999876422 2223334445555555655  6789999999865        2333456778


Q ss_pred             CCcEEEEEEeCCChhhHHH--HHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCC
Q 027894           85 GAVGALLVYDVTRHVTFEN--VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESM  161 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  161 (217)
                      .+|++++|+|+.++.+..+  +..|+..      .+.|+++|+||+|...    ......++ ...++. ++++||+++.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~----~~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPD----EEADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCcc----chhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            9999999999988654432  2333332      3689999999999643    12223333 345654 8999999999


Q ss_pred             CHHHHHHHHHH
Q 027894          162 NVENAFTEVLT  172 (217)
Q Consensus       162 ~v~~~~~~i~~  172 (217)
                      |++++|+.+.+
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999999987

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=5.7e-20  Score=151.22  Aligned_cols=161  Identities=22%  Similarity=0.193  Sum_probs=108.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----------hhh-h
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----------YRA-I   78 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~-~   78 (217)
                      ...++|+++|.+|+|||||+++|++..... ...+..+.+.....+...+  ..+.+|||||...          +.. .
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            357999999999999999999999875322 2233333333334444444  5678999999532          111 1


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH----HcCCcEEE
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE----RENTFFME  154 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~  154 (217)
                      ...+++.+|++++|+|++++.+.++.. +...+..   .+.|+++|+||+|+.+... ..+....+..    ...+++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence            234678899999999999987766553 2333332   4689999999999863211 1111111111    13578999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHHh
Q 027894          155 TSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      +||+++.|++++|+.+.+......
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~~~  347 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYENAN  347 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHc
Confidence            999999999999999988765443

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.85  E-value=6e-23  Score=143.15  Aligned_cols=195  Identities=34%  Similarity=0.567  Sum_probs=158.5

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCe-EEEEEEEeCCCchhhhhhhHhhhc
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK-IVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      .....+..+++.|+|.-|+|||+++.+++...++..+..+++.++......++.. .+++++||..||+++..+...+++
T Consensus        18 ap~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyk   97 (229)
T KOG4423|consen   18 APKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYK   97 (229)
T ss_pred             CCchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEec
Confidence            3344678899999999999999999999999999999999999888887777654 468899999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccC----CCCCcEEEEEeCCCCCCcc-cCCHHHHHHHHHHcCCc-EEEeccC
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHT----DSNIVIMLVGNKADLRHLC-AVSTEDAKAFAERENTF-FMETSAL  158 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~-~~~~Sa~  158 (217)
                      .+++.++|||+++..+|+....|.+.+....    +...|+++..||||....- .........+.+++|+. .+++|++
T Consensus        98 ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~K  177 (229)
T KOG4423|consen   98 EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAK  177 (229)
T ss_pred             CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccc
Confidence            9999999999999999999999999887643    2567889999999985421 22246677888888876 9999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCceeeecCCCCc
Q 027894          159 ESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDV  206 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (217)
                      .+.++.|+-..+++.+...-.      .+-++..+.++.+.+...+..
T Consensus       178 enkni~Ea~r~lVe~~lvnd~------q~~~s~~~~~~~~~l~~~~~s  219 (229)
T KOG4423|consen  178 ENKNIPEAQRELVEKILVNDE------QPIKSSAVDGDKINLRLMQPS  219 (229)
T ss_pred             cccChhHHHHHHHHHHHhhcc------CCcccccccccccCccccCcc
Confidence            999999999888887764321      122334566777777766644

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.84  E-value=3.1e-19  Score=134.73  Aligned_cols=150  Identities=27%  Similarity=0.274  Sum_probs=102.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh-------hhhhHhhhcCCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY-------RAITSAYYRGAV   87 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~d   87 (217)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+.+.+  ..+++||+||....       .......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            799999999999999999998764333323333444444555555  67899999996422       123345789999


Q ss_pred             EEEEEEeCCChh-hHHHHHHHHH--------------------------------------------HH-----------
Q 027894           88 GALLVYDVTRHV-TFENVERWLK--------------------------------------------EL-----------  111 (217)
Q Consensus        88 ~ii~v~d~~~~~-s~~~~~~~~~--------------------------------------------~l-----------  111 (217)
                      ++++|+|++++. ..+.+...+.                                            ..           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998755 2322222221                                            11           


Q ss_pred             -----------hccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          112 -----------RGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       112 -----------~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                                 ... ....|+++|+||+|+.     ..++...++.  ...++++||+++.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~-~~y~p~iiV~NK~Dl~-----~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGN-RVYIPCLYVYNKIDLI-----SIEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCC-ceEeeEEEEEECccCC-----CHHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       100 1347899999999984     3344444544  34589999999999999999988765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=2.5e-19  Score=154.75  Aligned_cols=159  Identities=19%  Similarity=0.200  Sum_probs=111.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCch----------hhhhh-h
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE----------RYRAI-T   79 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~-~   79 (217)
                      ..++|+++|.+|||||||+++|++..... ...++.+.+.....+.+++.  .+.+|||||..          .+... .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            45899999999999999999999987532 22344445555555556664  46799999952          22221 2


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHH-HH----cCCcEEE
Q 027894           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFA-ER----ENTFFME  154 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~~  154 (217)
                      ...++.+|++++|+|++++.+.++...+ ..+..   .+.|+++|+||+|+.+...  .+...... ..    ...++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i~-~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKVM-SMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            3446889999999999998887776533 33332   5689999999999864221  12222111 11    2356799


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHHh
Q 027894          155 TSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      +||++|.|++++|+.+.+.+.+..
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~  624 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWD  624 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999998876543

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=3.9e-19  Score=124.50  Aligned_cols=155  Identities=25%  Similarity=0.428  Sum_probs=119.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC--------CC----cccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE--------SK----STIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      ....+|+|.|+.++||||++++++.......        ..    .|..+++....+  ++ ...+.+++||||++|.-+
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~~-~~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--DE-DTGVHLFGTPGQERFKFM   84 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--cC-cceEEEecCCCcHHHHHH
Confidence            4568999999999999999999988763111        11    222233333222  22 145899999999999999


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc--CCcEEEec
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE--NTFFMETS  156 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S  156 (217)
                      |..+++.+.++++++|.+++..+ .....+..+....  .+|++|++||.|+.+  ....+..+++.+..  ..+.++.+
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~  159 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEID  159 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeee
Confidence            99999999999999999999988 5555566665533  299999999999977  44667777776665  78999999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 027894          157 ALESMNVENAFTEVLTQ  173 (217)
Q Consensus       157 a~~~~~v~~~~~~i~~~  173 (217)
                      |.++++..+.++.+...
T Consensus       160 a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         160 ATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cccchhHHHHHHHHHhh
Confidence            99999999999888776

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.84  E-value=2.7e-19  Score=154.27  Aligned_cols=153  Identities=16%  Similarity=0.127  Sum_probs=111.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh----------hHhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI----------TSAY   82 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~   82 (217)
                      .++|+++|++|+|||||+|+|++........+  +.+.......+.....++.+|||||..++...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            47899999999999999999998765433333  34444443334444567899999997654321          1223


Q ss_pred             h--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894           83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus        83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      +  ..+|++++|+|.++.+..   ..+...+.+   .+.|+++++||+|+.+.+.. ..+.+++.+..+++++++|++++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            2  479999999999875432   223344433   46999999999998654443 34567778889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027894          161 MNVENAFTEVLTQI  174 (217)
Q Consensus       161 ~~v~~~~~~i~~~~  174 (217)
                      +|++++++.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999887764

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=2.5e-19  Score=154.74  Aligned_cols=154  Identities=21%  Similarity=0.176  Sum_probs=105.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCcccceeEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--------YRAITSAY   82 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~   82 (217)
                      ...+|+++|.+|+|||||+|+|++...... ..++.+.+.......+.+  ..+.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            457899999999999999999998764322 223333333333333444  5689999999652        33445567


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCC
Q 027894           83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESM  161 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  161 (217)
                      +..+|++++|+|+++.-+..+ ..|...+..   .+.|+++|+||+|+....    .....+.. .+. ..+++||+++.
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~g~  422 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMHGR  422 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCCCC
Confidence            889999999999987432221 234444443   579999999999985421    12222222 232 36789999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027894          162 NVENAFTEVLTQIYH  176 (217)
Q Consensus       162 ~v~~~~~~i~~~~~~  176 (217)
                      |++++|++|++.+..
T Consensus       423 GI~eLl~~i~~~l~~  437 (712)
T PRK09518        423 GVGDLLDEALDSLKV  437 (712)
T ss_pred             CchHHHHHHHHhccc
Confidence            999999999988754

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.83  E-value=2.3e-19  Score=122.99  Aligned_cols=135  Identities=24%  Similarity=0.247  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC----chhhhhhhHhhhcCCcEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----QERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~ii   90 (217)
                      ||+++|+.|+|||||+++|.+...  .+..|..+       .+.+     .++||||    ...+.+.......++|+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i-------~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAI-------EYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCcccee-------Eecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998665  33333322       1222     4599999    3456666777778999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE  169 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++.|++++.+.-     -..+...  -..|+|-|+||+|+.. .....+.++++.+..|+. +|++|+.+++|++++.++
T Consensus        69 ll~dat~~~~~~-----pP~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVF-----PPGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccC-----Cchhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            999999875411     1111111  3589999999999973 234666777888888875 899999999999999988


Q ss_pred             HH
Q 027894          170 VL  171 (217)
Q Consensus       170 i~  171 (217)
                      |-
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.83  E-value=3.6e-19  Score=149.27  Aligned_cols=156  Identities=19%  Similarity=0.169  Sum_probs=103.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC----------------CeEEEEEEEeCCCchhhhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE----------------DKIVKAQIWDTAGQERYRA   77 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~~~~   77 (217)
                      .-|+++|++++|||||+++|.+..+......+.+.+.....+..+                .....+.+|||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            459999999999999999999887654332222111111111111                0112388999999999999


Q ss_pred             hhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC------------CHHH--
Q 027894           78 ITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV------------STED--  140 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~------------~~~~--  140 (217)
                      ++..+++.+|++++|+|+++   +.+++.+.    .+..   .+.|+++++||+|+......            ....  
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            99989999999999999997   44443332    2222   46899999999998531100            0000  


Q ss_pred             ----------HHHHHH------------H--cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          141 ----------AKAFAE------------R--ENTFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       141 ----------~~~~~~------------~--~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                                ..++..            .  ..++++++||++|+|+++++.++......
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence                      001111            0  13679999999999999999998765544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=1.1e-18  Score=146.90  Aligned_cols=161  Identities=14%  Similarity=0.159  Sum_probs=115.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh--CcCCCCC------------CcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTR--NEFSLES------------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      .-+|+++|+.++|||||+++|+.  +.+....            ..+.++++......+.....++.+|||||+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            46899999999999999999997  3332211            123455555555555556688999999999999999


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc-CCHHHHHHHHH-------HcCC
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA-VSTEDAKAFAE-------RENT  150 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~  150 (217)
                      +..+++.+|++++|+|+.+....+.. .++..+..   .++|.++++||+|+...+. ...+++..+..       ...+
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            99999999999999999886433332 33333332   4688999999999864321 11233333332       2357


Q ss_pred             cEEEeccCCCC----------CHHHHHHHHHHHHHHH
Q 027894          151 FFMETSALESM----------NVENAFTEVLTQIYHV  177 (217)
Q Consensus       151 ~~~~~Sa~~~~----------~v~~~~~~i~~~~~~~  177 (217)
                      +++.+||++|.          ++..+|+.|++.+...
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            89999999998          5888888888877644

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=1.8e-18  Score=127.03  Aligned_cols=148  Identities=20%  Similarity=0.177  Sum_probs=98.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC------C--------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL------E--------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      .++|+++|+.++|||||+++|+......      .        .....+++.......+.....++.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            5899999999999999999998641100      0        0012233444444445455567899999999888777


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC---CHHHHHHHHHHc-----C
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV---STEDAKAFAERE-----N  149 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~-----~  149 (217)
                      ....+..+|++++|+|+.....-+. ...+..+..   .+.| +|+++||+|+....+.   ..+++..+....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            7788899999999999987543222 223333333   3465 7789999998532221   123344554443     3


Q ss_pred             CcEEEeccCCCCCHH
Q 027894          150 TFFMETSALESMNVE  164 (217)
Q Consensus       150 ~~~~~~Sa~~~~~v~  164 (217)
                      ++++++||++|.+..
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            679999999998853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.82  E-value=2.7e-19  Score=133.10  Aligned_cols=147  Identities=26%  Similarity=0.223  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC-------------------------------CcccceeEEEEEEEECCeEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLES-------------------------------KSTIGVEFATRSIRVEDKIVK   63 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   63 (217)
                      ||+++|++|+|||||+++|+...-....                               ....+.+.....  +......
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY--FSTPKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE--EecCCce
Confidence            6899999999999999999764321110                               012222222223  3333457


Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC----CHH
Q 027894           64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV----STE  139 (217)
Q Consensus        64 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~----~~~  139 (217)
                      +.+|||||++.+.......++.+|++++|+|++++..-+. ......+...  ...++|+|+||+|+.+....    ...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            8999999998887667777899999999999987642222 1222222221  22457789999998642111    123


Q ss_pred             HHHHHHHHcC---CcEEEeccCCCCCHHHH
Q 027894          140 DAKAFAEREN---TFFMETSALESMNVENA  166 (217)
Q Consensus       140 ~~~~~~~~~~---~~~~~~Sa~~~~~v~~~  166 (217)
                      +...+....+   .+++++||+++.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            3445555555   35899999999998754

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.82  E-value=2.2e-19  Score=147.11  Aligned_cols=156  Identities=18%  Similarity=0.129  Sum_probs=100.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-----------------------------CcccceeEEEEEEEECCeE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-----------------------------KSTIGVEFATRSIRVEDKI   61 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|++++|||||+++|+...-....                             ....+++.......+....
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            45699999999999999999999853211100                             0012333333333344445


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHhccCCCCCcEEEEEeCCCCCCccc----C
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLRHLCA----V  136 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----~  136 (217)
                      ..+.+|||||++.|.......+..+|++++|+|+++..++.. ....+..+.. . ...|+++++||+|+.+...    .
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~-~~~~iivviNK~Dl~~~~~~~~~~  161 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-L-GINQLIVAINKMDAVNYDEKRYEE  161 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-c-CCCeEEEEEEccccccccHHHHHH
Confidence            789999999998887666666789999999999987322211 1122222222 1 2246899999999864211    1


Q ss_pred             CHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 027894          137 STEDAKAFAEREN-----TFFMETSALESMNVENAFT  168 (217)
Q Consensus       137 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~  168 (217)
                      ..+++..++...+     ++++++||++|+|+++.++
T Consensus       162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            2234555555554     5699999999999988553

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.82  E-value=3.9e-19  Score=145.62  Aligned_cols=155  Identities=17%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC--cCCC-----------------------------CCCcccceeEEEEEEEEC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRN--EFSL-----------------------------ESKSTIGVEFATRSIRVE   58 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~   58 (217)
                      ....++|+++|+.++|||||+.+|+..  ....                             ......+.+....  .+.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~--~~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHW--KFE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEE--EEc
Confidence            345699999999999999999999862  1110                             0112333444333  344


Q ss_pred             CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH--HHHHHHHhccCCCCCcEEEEEeCCCCCCccc-
Q 027894           59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV--ERWLKELRGHTDSNIVIMLVGNKADLRHLCA-  135 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-  135 (217)
                      .....+.+|||||++.|.......+..+|++++|+|++++.+....  ..++. +.... ...|+++++||+|+.+... 
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~~~  159 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYDEE  159 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCccHH
Confidence            4457899999999998877777778899999999999988533111  11111 11111 2357899999999963211 


Q ss_pred             ---CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 027894          136 ---VSTEDAKAFAEREN-----TFFMETSALESMNVENAFT  168 (217)
Q Consensus       136 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~  168 (217)
                         ....++..+++..+     ++++++||+++.|+.+.+.
T Consensus       160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence               12345556666655     5799999999999987543

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.82  E-value=8e-19  Score=125.99  Aligned_cols=150  Identities=21%  Similarity=0.276  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhhhhhHhhhc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYRAITSAYYR   84 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~~   84 (217)
                      .|+++|.+|+|||||++.+.+........++.+.+.....+..+.   .+.+|||||.          +.+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996655554445555544444444443   7899999993          223444444443


Q ss_pred             ---CCcEEEEEEeCCChhhHH--HHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHHHHHHH--HcCCcEEEe
Q 027894           85 ---GAVGALLVYDVTRHVTFE--NVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDAKAFAE--RENTFFMET  155 (217)
Q Consensus        85 ---~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~  155 (217)
                         ..+++++++|.....+..  .+..|+..      .+.|+++++||+|+......  ..........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               457889999988663322  22333332      24889999999998432111  1122222222  344679999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027894          156 SALESMNVENAFTEVLTQ  173 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.++++++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=4.9e-19  Score=149.03  Aligned_cols=159  Identities=15%  Similarity=0.187  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC--cCCCCC------------CcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhH
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN--EFSLES------------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      +|+++|+.++|||||+.+|+..  .+....            ....+++.......+.....++.+|||||+..|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999863  221110            01123334433333333447899999999999998899


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHHHH-------HcCCcE
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAFAE-------RENTFF  152 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~~  152 (217)
                      .+++.+|++++|+|+.+.. ......++..+..   .++|+++|+||+|+.+.+.. ..++...+..       ...+++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv  158 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI  158 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence            9999999999999998753 3334455555544   56889999999998643211 1233333332       235789


Q ss_pred             EEeccCCCC----------CHHHHHHHHHHHHHHH
Q 027894          153 METSALESM----------NVENAFTEVLTQIYHV  177 (217)
Q Consensus       153 ~~~Sa~~~~----------~v~~~~~~i~~~~~~~  177 (217)
                      +++||+++.          |+..+|+.|++.+...
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            999999996          7999999998887644

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.82  E-value=1.2e-18  Score=136.44  Aligned_cols=174  Identities=20%  Similarity=0.158  Sum_probs=131.0

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc---------hhhhh
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------ERYRA   77 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~   77 (217)
                      .........|+++|.+|+|||||+|+|++........-..+.+.....+.+.+ ...+.+-||.|.         +.|.+
T Consensus       186 ~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks  264 (411)
T COG2262         186 KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS  264 (411)
T ss_pred             hhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH
Confidence            34456778999999999999999999998877655556666777777777765 356899999993         34444


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894           78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      .... ...+|++++|+|++++...+.++.....+......+.|+|+|.||+|+.....    .......... ..+.+||
T Consensus       265 TLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA  338 (411)
T COG2262         265 TLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISA  338 (411)
T ss_pred             HHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEe
Confidence            4433 47799999999999998877777777777776657799999999999754222    1112222222 5888999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhccccCCCC
Q 027894          158 LESMNVENAFTEVLTQIYHVVSRKALDIGG  187 (217)
Q Consensus       158 ~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~  187 (217)
                      ++++|++.+.+.|.+.+..........++.
T Consensus       339 ~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~  368 (411)
T COG2262         339 KTGEGLDLLRERIIELLSGLRTEVTLELPY  368 (411)
T ss_pred             ccCcCHHHHHHHHHHHhhhcccceEEEcCc
Confidence            999999999999999998777666555443

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=1.6e-18  Score=137.56  Aligned_cols=151  Identities=23%  Similarity=0.176  Sum_probs=108.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchh---------hhhhhHhhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER---------YRAITSAYY   83 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~   83 (217)
                      ..|+++|.||||||||+|+|++....... .+..+.+.......+.+  ..+.++||+|.+.         ........+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999998876533 35555555555666666  4589999999432         234455667


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCC
Q 027894           84 RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMN  162 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  162 (217)
                      ..||++|||+|....-+-++- .....+..   .++|+++|+||+|-..    ..+...+|.. +|+ .++.+||..|.|
T Consensus        82 ~eADvilfvVD~~~Git~~D~-~ia~~Lr~---~~kpviLvvNK~D~~~----~e~~~~efys-lG~g~~~~ISA~Hg~G  152 (444)
T COG1160          82 EEADVILFVVDGREGITPADE-EIAKILRR---SKKPVILVVNKIDNLK----AEELAYEFYS-LGFGEPVPISAEHGRG  152 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHH-HHHHHHHh---cCCCEEEEEEcccCch----hhhhHHHHHh-cCCCCceEeehhhccC
Confidence            899999999999875443221 12222221   5699999999999642    2233334443 454 589999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQIY  175 (217)
Q Consensus       163 v~~~~~~i~~~~~  175 (217)
                      +.++++.+++.+.
T Consensus       153 i~dLld~v~~~l~  165 (444)
T COG1160         153 IGDLLDAVLELLP  165 (444)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999999884

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=3.7e-18  Score=122.21  Aligned_cols=162  Identities=20%  Similarity=0.241  Sum_probs=115.9

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC----------chhhh
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----------QERYR   76 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~   76 (217)
                      +-+.+....|+++|.+|||||||||+|+++........|+|.+.....+.+++.   +.++|.||          .+.+.
T Consensus        18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~   94 (200)
T COG0218          18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK   94 (200)
T ss_pred             hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence            335567789999999999999999999998755555577777777888877764   78999999          45666


Q ss_pred             hhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH----cC
Q 027894           77 AITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER----EN  149 (217)
Q Consensus        77 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----~~  149 (217)
                      .....|+..   ..++++++|+..+..-.+. .++..+..   .++|+++++||+|.....+.. ......+..    ..
T Consensus        95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~  169 (200)
T COG0218          95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPP  169 (200)
T ss_pred             HHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCC
Confidence            777777753   5678889998776544333 33333333   579999999999986532222 112222222    22


Q ss_pred             Cc--EEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          150 TF--FMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       150 ~~--~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      ..  ++..|+.++.|++++...|.+.+..
T Consensus       170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         170 DDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            22  7888999999999999999887754

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.81  E-value=5.5e-19  Score=118.06  Aligned_cols=153  Identities=24%  Similarity=0.352  Sum_probs=117.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..+||+++|-.++|||||++.|..... ....+|.|  +....+.+++ .+++.+||.+|+...+..|..|+.+.|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence            6679999999999999999999987664 33345555  4455554444 488999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhc-cCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc--------CCcEEEeccCCCC
Q 027894           91 LVYDVTRHVTFENVERWLKELRG-HTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE--------NTFFMETSALESM  161 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~  161 (217)
                      ||+|.+|..-|+++..-+..+.. .....+|+++..||.|+.-     .....+.+.+.        .+-+-++|+.+++
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt-----aa~~eeia~klnl~~lrdRswhIq~csals~e  165 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT-----AAKVEEIALKLNLAGLRDRSWHIQECSALSLE  165 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh-----hcchHHHHHhcchhhhhhceEEeeeCcccccc
Confidence            99999999989988665555543 3337899999999999743     12222233322        2457899999999


Q ss_pred             CHHHHHHHHHH
Q 027894          162 NVENAFTEVLT  172 (217)
Q Consensus       162 ~v~~~~~~i~~  172 (217)
                      |+..-.+|+..
T Consensus       166 g~~dg~~wv~s  176 (185)
T KOG0074|consen  166 GSTDGSDWVQS  176 (185)
T ss_pred             CccCcchhhhc
Confidence            98888877754

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.81  E-value=2.9e-18  Score=145.00  Aligned_cols=157  Identities=20%  Similarity=0.152  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc---CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      -|+++|+.++|||||+++|++..   +........+++.....+...+ ...+.+|||||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            48899999999999999998643   3323333444444333333322 2357999999999998888888899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC--CHHHHHHHHHHcC---CcEEEeccCCCCCHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV--STEDAKAFAEREN---TFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~  165 (217)
                      |+|+++...-++.+. +..+..   .+.| +++|+||+|+.+....  ..++...+....+   .+++++||++|+|+++
T Consensus        81 VVda~eg~~~qT~eh-l~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVMAQTREH-LAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCcHHHHHH-HHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            999987432222211 222222   2345 5789999998642211  1234455555444   6799999999999999


Q ss_pred             HHHHHHHHHHH
Q 027894          166 AFTEVLTQIYH  176 (217)
Q Consensus       166 ~~~~i~~~~~~  176 (217)
                      +++.|.+....
T Consensus       157 L~~~L~~~~~~  167 (614)
T PRK10512        157 LREHLLQLPER  167 (614)
T ss_pred             HHHHHHHhhcc
Confidence            99999875443

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=9.3e-19  Score=142.26  Aligned_cols=163  Identities=21%  Similarity=0.182  Sum_probs=105.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEEE------------------EEEEECC------eEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFAT------------------RSIRVED------KIVK   63 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~~------------------~~~~~~~------~~~~   63 (217)
                      ...++|+++|+.++|||||+++|.+.....   ......+.....                  .....+.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            356899999999999999999997642211   100111111110                  0000011      1357


Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHH
Q 027894           64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDA  141 (217)
Q Consensus        64 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~  141 (217)
                      +.+||+||++.|...+......+|++++|+|++++.........+..+...  ...|+++++||+|+.+....  ..+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            899999999999888888888999999999999753111122222222221  23568999999998642211  12334


Q ss_pred             HHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          142 KAFAERE---NTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       142 ~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      ..+....   +++++++||++++|+++++++|...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            4444432   578999999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=1.9e-18  Score=137.24  Aligned_cols=162  Identities=23%  Similarity=0.202  Sum_probs=114.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhh-hhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYR-AIT   79 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~-~~~   79 (217)
                      ..+||+++|.||+|||||+|+|++.+....+ .+..+.+.....+.+++  -++.++||+|-          +.|. ...
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence            5699999999999999999999998765543 23434444444555555  56899999993          2232 122


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----cCCcEEE
Q 027894           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----ENTFFME  154 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~  154 (217)
                      ...+..+|++++|+|++.+-+-++.. ....+..   .+.++++|+||+|+.+......++.+.-...     ..++.++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            34567899999999999987655442 2333332   5788999999999876543444444333222     2367999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHHhh
Q 027894          155 TSALESMNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~~~~~~~  179 (217)
                      +||+++.++.++|+.+.+.......
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~  355 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATR  355 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhcc
Confidence            9999999999999998876655443

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.80  E-value=1.6e-18  Score=140.77  Aligned_cols=164  Identities=21%  Similarity=0.190  Sum_probs=104.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEEEEEEE------------------EC--C----eE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIR------------------VE--D----KI   61 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~~~~~~------------------~~--~----~~   61 (217)
                      .....++|+++|+.++|||||+.+|.+.....   ......+.........                  ..  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            34556999999999999999999996531111   1111112211110000                  00  0    12


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--ST  138 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~  138 (217)
                      ..+.+|||||++.|..........+|++++|+|++++. ..+.... +..+...  ...|+++|+||+|+.+....  ..
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            57899999999988776666677889999999999653 2222222 2222221  22468999999998653221  12


Q ss_pred             HHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          139 EDAKAFAERE---NTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       139 ~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      ++...++...   +++++++||++++|++++++.|.+.+.
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            3344444332   578999999999999999999987664

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.80  E-value=7e-18  Score=142.02  Aligned_cols=157  Identities=17%  Similarity=0.168  Sum_probs=101.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc----ccceeEEEEEEEE--CCeE-----E-----EEEEEeCCCchhhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS----TIGVEFATRSIRV--EDKI-----V-----KAQIWDTAGQERYR   76 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~-----~-----~~~l~Dt~G~~~~~   76 (217)
                      ...|+++|++++|||||+++|.+.........    +.+.++.......  .+..     .     .+.+|||||++.|.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            45799999999999999999987654332222    1121111111000  0111     1     26899999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--C--------------
Q 027894           77 AITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--S--------------  137 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~--------------  137 (217)
                      .++...+..+|++++|+|+++   +.+++.+.    .+..   .+.|+++++||+|+......  .              
T Consensus        86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v  158 (586)
T PRK04004         86 NLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV  158 (586)
T ss_pred             HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence            888888899999999999997   44544432    2222   46899999999998421100  0              


Q ss_pred             HH-------HHHHHHHH---------------cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          138 TE-------DAKAFAER---------------ENTFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       138 ~~-------~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      .+       +.......               ..++++++||++++|++++++.+...+.+
T Consensus       159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~  219 (586)
T PRK04004        159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR  219 (586)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence            00       01011111               13579999999999999999988765443

>cd04167 Snu114p Snu114p subfamily

Probab=99.80  E-value=2.1e-18  Score=128.87  Aligned_cols=113  Identities=27%  Similarity=0.332  Sum_probs=80.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC-----------------CcccceeEEEE--EEEE---CCeEEEEEEEeCCCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLES-----------------KSTIGVEFATR--SIRV---EDKIVKAQIWDTAGQ   72 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~-----------------~~~~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~   72 (217)
                      +|+++|+.|+|||||+++|+........                 ....+.+....  .+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875433210                 01111222222  2212   345688999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      ..+......++..+|++++|+|+++..+... ..++..+..   .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9888888888999999999999988766543 333333322   458999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.80  E-value=3e-18  Score=136.42  Aligned_cols=156  Identities=20%  Similarity=0.199  Sum_probs=113.1

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhH
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR--------AITS   80 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~   80 (217)
                      -..-++|+++|.||+|||||+|.|++....... .+.++-+.....+.+++  +.+.++||+|.+.-.        ....
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~  291 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAK  291 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHH
Confidence            345789999999999999999999999876643 35555666666777777  678999999943221        1123


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      ..+..+|.+++|+|.+.+.+-++..- +.    ....+.|+++|.||.|+.........     ....+.+++.+|++++
T Consensus       292 ~~i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~  361 (454)
T COG0486         292 KAIEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTG  361 (454)
T ss_pred             HHHHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCc
Confidence            45688999999999998633222211 11    22367999999999999764331111     2223457899999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027894          161 MNVENAFTEVLTQIYHV  177 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~~~  177 (217)
                      +|++.+.+.|.+.+...
T Consensus       362 ~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         362 EGLDALREAIKQLFGKG  378 (454)
T ss_pred             cCHHHHHHHHHHHHhhc
Confidence            99999999998888766

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.79  E-value=7.4e-18  Score=127.41  Aligned_cols=113  Identities=19%  Similarity=0.201  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      +|+++|+.|+|||||+++|+...-....                ....+.+.......+.....++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999864211100                011122233333333344478999999999988888


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      +..+++.+|++++|+|+++.... ....++..+..   .+.|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence            88899999999999999987543 33444455443   468999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.3e-19  Score=121.42  Aligned_cols=160  Identities=19%  Similarity=0.290  Sum_probs=118.9

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+...+|+++|-.|+||||++-++.-++... ..|+.+...  ..+++  +++++++||..|+-+.+..|+-|+.+.|++
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnv--e~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~av   89 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNV--ETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAV   89 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCc--ccccc--ccccceeeEccCcccccHHHHHHhcccceE
Confidence            3467899999999999999998887666533 235544433  33333  668999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHH-HHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHH-----HHHHHcCCcEEEeccCCCCCH
Q 027894           90 LLVYDVTRHVTFENVER-WLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAK-----AFAERENTFFMETSALESMNV  163 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~v  163 (217)
                      |||+|.+|.+....... ++..+.+..-+...++++.||.|....  ....++.     .-.+..-+.+|++||.+++|+
T Consensus        90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gl  167 (182)
T KOG0072|consen   90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGL  167 (182)
T ss_pred             EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCC
Confidence            99999999887665543 444454444467788899999998642  2222221     222233477999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          164 ENAFTEVLTQIYH  176 (217)
Q Consensus       164 ~~~~~~i~~~~~~  176 (217)
                      ++.++|+.+-+.+
T Consensus       168 d~~~DWL~~~l~~  180 (182)
T KOG0072|consen  168 DPAMDWLQRPLKS  180 (182)
T ss_pred             cHHHHHHHHHHhc
Confidence            9999999887653

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.79  E-value=5.1e-18  Score=127.74  Aligned_cols=168  Identities=22%  Similarity=0.190  Sum_probs=113.5

Q ss_pred             cCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc------hh----
Q 027894            5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ------ER----   74 (217)
Q Consensus         5 ~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~----   74 (217)
                      +.+......++|+++|.||+|||||.|.+++....+.+....++......+ +.....++.|+||||.      ..    
T Consensus        64 rde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~  142 (379)
T KOG1423|consen   64 RDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLM  142 (379)
T ss_pred             CCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHH
Confidence            334456778999999999999999999999999999887777666655555 4444578999999992      11    


Q ss_pred             --hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc-------------cCCH-
Q 027894           75 --YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC-------------AVST-  138 (217)
Q Consensus        75 --~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~-------------~~~~-  138 (217)
                        +.......+..+|.+++++|+++....-. ...+..+..+  ..+|-++|+||.|....+             .++. 
T Consensus       143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~  219 (379)
T KOG1423|consen  143 MSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL  219 (379)
T ss_pred             HHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence              11233445678999999999996432111 1223333332  468889999999985322             1111 


Q ss_pred             --HHHHHHHHHc---------CC----cEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          139 --EDAKAFAERE---------NT----FFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       139 --~~~~~~~~~~---------~~----~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                        +-...+....         ++    .+|.+||++|+|++++-++++..+..
T Consensus       220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence              1111121111         12    28999999999999999988876654

>PRK12736 elongation factor Tu; Reviewed

Probab=99.79  E-value=8.3e-18  Score=136.22  Aligned_cols=161  Identities=17%  Similarity=0.130  Sum_probs=105.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC--------------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ....++|+++|+.++|||||+++|++.....              ......+++.......+......+.+|||||++.|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            4457999999999999999999998632100              00012233344444445445567899999999988


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccCC---HHHHHHHHHHcC--
Q 027894           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAVS---TEDAKAFAEREN--  149 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~--  149 (217)
                      .......+..+|++++|+|+.+...-+.. ..+..+..   .++| +|+++||+|+.+..+..   .++...+....+  
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            77777777899999999999875332222 22233332   3577 67889999986422211   234555555544  


Q ss_pred             ---CcEEEeccCCCC--------CHHHHHHHHHHHH
Q 027894          150 ---TFFMETSALESM--------NVENAFTEVLTQI  174 (217)
Q Consensus       150 ---~~~~~~Sa~~~~--------~v~~~~~~i~~~~  174 (217)
                         ++++++||+++.        ++.++++.+.+.+
T Consensus       165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence               579999999983        4566666655544

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=5e-18  Score=127.26  Aligned_cols=147  Identities=18%  Similarity=0.154  Sum_probs=92.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCC--------------------------C---CcccceeEEEEEEEECCeEEEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLE--------------------------S---KSTIGVEFATRSIRVEDKIVKAQ   65 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~~~~   65 (217)
                      +|+++|+.++|||||+.+|+...-...                          .   ....+++.......+.....++.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999864311000                          0   00112223333333333447899


Q ss_pred             EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh-------hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc--ccC
Q 027894           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-------TFENVERWLKELRGHTDSNIVIMLVGNKADLRHL--CAV  136 (217)
Q Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~--~~~  136 (217)
                      +|||||+..+...+...+..+|++++|+|+++..       ..+....+ ..... . ...|+++++||+|+...  ...
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-L-GVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-c-CCCeEEEEEEccccccccccHH
Confidence            9999999888777777788999999999999852       11122222 22221 1 23688999999998631  111


Q ss_pred             ----CHHHHHHHHHHcC-----CcEEEeccCCCCCHH
Q 027894          137 ----STEDAKAFAEREN-----TFFMETSALESMNVE  164 (217)
Q Consensus       137 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~  164 (217)
                          ..+++..+....+     ++++++||++|+|++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                1122233344433     669999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.77  E-value=1.8e-17  Score=134.38  Aligned_cols=148  Identities=17%  Similarity=0.125  Sum_probs=98.2

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCC------------C--CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFS------------L--ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ....++|+++|+.++|||||+++|++....            .  ......+++.....+.+.....++.+|||||++.|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            456799999999999999999999743100            0  00011233333444555555577899999999988


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEE-EEEeCCCCCCcccCC---HHHHHHHHHHcC--
Q 027894           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRHLCAVS---TEDAKAFAEREN--  149 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~~---~~~~~~~~~~~~--  149 (217)
                      .......+..+|++++|+|+.+....+.. ..+..+..   .++|.+ +++||+|+.+..+..   .+++..++..++  
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~  164 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            77777777889999999999875333322 22223322   356655 689999986422211   234566666654  


Q ss_pred             ---CcEEEeccCCCC
Q 027894          150 ---TFFMETSALESM  161 (217)
Q Consensus       150 ---~~~~~~Sa~~~~  161 (217)
                         ++++++||.++.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       165 GDDTPIIRGSALKAL  179 (394)
T ss_pred             ccCccEEECcccccc
Confidence               689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.77  E-value=3.1e-17  Score=132.99  Aligned_cols=161  Identities=17%  Similarity=0.145  Sum_probs=104.6

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcC-------CC-------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEF-------SL-------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ....++|+++|++++|||||+++|++...       ..       ......+++.......+.....++.++||||++.|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            35669999999999999999999986210       00       00012233333344444444567899999999988


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEE-EEEeCCCCCCcccC---CHHHHHHHHHHcC--
Q 027894           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRHLCAV---STEDAKAFAEREN--  149 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~---~~~~~~~~~~~~~--  149 (217)
                      .......+..+|++++|+|+.+....+. ...+..+..   .++|.+ +++||+|+.+..+.   ...++..+...++  
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            7777777889999999999987543222 233333332   457755 57999998642211   1234555555543  


Q ss_pred             ---CcEEEeccCCCC----------CHHHHHHHHHHHH
Q 027894          150 ---TFFMETSALESM----------NVENAFTEVLTQI  174 (217)
Q Consensus       150 ---~~~~~~Sa~~~~----------~v~~~~~~i~~~~  174 (217)
                         ++++++||.++.          ++.++++.|.+.+
T Consensus       165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence               679999999984          4566666665543

>CHL00071 tufA elongation factor Tu

Probab=99.76  E-value=4.6e-17  Score=132.52  Aligned_cols=158  Identities=16%  Similarity=0.122  Sum_probs=103.0

Q ss_pred             CccccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC------C--------CCcccceeEEEEEEEECCeEEEEEE
Q 027894            1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL------E--------SKSTIGVEFATRSIRVEDKIVKAQI   66 (217)
Q Consensus         1 ~~~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l   66 (217)
                      |++..-+ .....++|+++|++++|||||+++|++..-..      .        .....+++.......+.....++.+
T Consensus         1 ~~~~~~~-~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~   79 (409)
T CHL00071          1 MAREKFE-RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAH   79 (409)
T ss_pred             Cchhhcc-CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEE
Confidence            4444433 35566999999999999999999998742110      0        0011233344333444444567899


Q ss_pred             EeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC---CHHHHH
Q 027894           67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV---STEDAK  142 (217)
Q Consensus        67 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~  142 (217)
                      +||||+..|.......+..+|++++|+|+.....-+.. ..+..+..   .++| +|+++||+|+.+..+.   ..+++.
T Consensus        80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~-~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~  155 (409)
T CHL00071         80 VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTK-EHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVR  155 (409)
T ss_pred             EECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHH
Confidence            99999988877777788899999999999875432222 22233332   4577 7789999998642221   123455


Q ss_pred             HHHHHcC-----CcEEEeccCCCCCH
Q 027894          143 AFAEREN-----TFFMETSALESMNV  163 (217)
Q Consensus       143 ~~~~~~~-----~~~~~~Sa~~~~~v  163 (217)
                      .+....+     ++++++||.++.++
T Consensus       156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        156 ELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHhCCCCCcceEEEcchhhcccc
Confidence            5555543     67999999998743

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.76  E-value=2.4e-17  Score=123.08  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=79.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CcccceeEEEEEEEEC--------CeEEEEEEEeCC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KSTIGVEFATRSIRVE--------DKIVKAQIWDTA   70 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~   70 (217)
                      +|+++|+.++|||||+.+|+...-....                ....++......+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6999999999999999999764321100                0111111112222232        336789999999


Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      |+..|......+++.+|++++|+|+.++.+.+....+.. ...   .++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH---cCCCEEEEEECCCcc
Confidence            999999889999999999999999998766554333332 222   457899999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.76  E-value=2.5e-17  Score=124.61  Aligned_cols=157  Identities=18%  Similarity=0.238  Sum_probs=115.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhhhHhh---hcC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAITSAY---YRG   85 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~   85 (217)
                      ...|.+||.||+|||||++.+............+++....-.+.+++. ..+.+-|.||..+    .+.+-..+   +..
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence            456889999999999999999998766655566666666665555443 4489999999422    12222223   457


Q ss_pred             CcEEEEEEeCCCh---hhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCC
Q 027894           86 AVGALLVYDVTRH---VTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALE  159 (217)
Q Consensus        86 ~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~  159 (217)
                      ++.++||+|++.+   ..|+.++.+..++..+..  .+.|.++|+||+|+.+   .....+.++++...-+ ++++||+.
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e---ae~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE---AEKNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh---HHHHHHHHHHHHcCCCcEEEeeecc
Confidence            8999999999998   888888777766665543  6789999999999852   1222246666666544 99999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQ  173 (217)
Q Consensus       160 ~~~v~~~~~~i~~~  173 (217)
                      ++++.++++.|-+.
T Consensus       352 ~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  352 GEGLEELLNGLREL  365 (366)
T ss_pred             ccchHHHHHHHhhc
Confidence            99999999877653

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.76  E-value=4.1e-17  Score=135.18  Aligned_cols=156  Identities=17%  Similarity=0.146  Sum_probs=114.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch-------hhhhhhHhhh-cC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-------RYRAITSAYY-RG   85 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~~~~-~~   85 (217)
                      .+|+++|+||+|||||+|++++........+..+.+...-.+...+.  ++.++|+||--       +-.-..+..+ .+
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            56999999999999999999999887777777777777766666664  48999999932       1122223333 46


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      +|+++-|+|+++-+-  ++.-.++.++    -+.|++++.|++|....+-+. -+.+++.+..|+|+++++|++|+|+++
T Consensus        82 ~D~ivnVvDAtnLeR--nLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~~  154 (653)
T COG0370          82 PDLIVNVVDATNLER--NLYLTLQLLE----LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLEE  154 (653)
T ss_pred             CCEEEEEcccchHHH--HHHHHHHHHH----cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence            799999999988642  1222222222    578999999999986543333 346677788999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027894          166 AFTEVLTQIYHVV  178 (217)
Q Consensus       166 ~~~~i~~~~~~~~  178 (217)
                      +...+.+......
T Consensus       155 l~~~i~~~~~~~~  167 (653)
T COG0370         155 LKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHhccccc
Confidence            9998886554433

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=5.3e-17  Score=123.73  Aligned_cols=158  Identities=22%  Similarity=0.203  Sum_probs=113.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc------hhh---hhhhHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ------ERY---RAITSAY   82 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~---~~~~~~~   82 (217)
                      ....|+|.|+||||||||++.+++......+.+.++-..+.-++..++  .+++++||||.      +..   .....++
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            567899999999999999999999988777777776666666665555  67899999992      111   1112222


Q ss_pred             hcCCcEEEEEEeCCC--hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894           83 YRGAVGALLVYDVTR--HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALE  159 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      -+-.++++|++|++.  .-+++....++..+.....  .|+++|+||+|..+..  ..++........+. ....+++..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e--~~~~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEE--KLEEIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchh--HHHHHHHHHHhhccccccceeeee
Confidence            334678999999986  4567777788888877663  8999999999987532  22333333444443 367788888


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQIY  175 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~~  175 (217)
                      +.+.+.+-..+.....
T Consensus       321 ~~~~d~~~~~v~~~a~  336 (346)
T COG1084         321 GCGLDKLREEVRKTAL  336 (346)
T ss_pred             hhhHHHHHHHHHHHhh
Confidence            8888877777666533

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.75  E-value=7.3e-18  Score=136.48  Aligned_cols=168  Identities=26%  Similarity=0.262  Sum_probs=124.6

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....+||+++|..|+||||||-.++..+|.....+-..  .......+....+...++|++..+.-+.....-++.+|+
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v   82 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV   82 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence            344579999999999999999999999998776543321  222223333334567999998766655556777899999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHH-HHHHHHHcC-Cc-EEEeccCCCCC
Q 027894           89 ALLVYDVTRHVTFENV-ERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTED-AKAFAEREN-TF-FMETSALESMN  162 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~-~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~-~~-~~~~Sa~~~~~  162 (217)
                      +.++|+.+++.+++.+ ..|+..+.+..+  .++|+|+|+||.|.......+.+. ...+..++. +. .++|||++..+
T Consensus        83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            9999999999999998 458888887764  679999999999997544443332 333333222 22 79999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027894          163 VENAFTEVLTQIYHVV  178 (217)
Q Consensus       163 v~~~~~~i~~~~~~~~  178 (217)
                      +.++|......++...
T Consensus       163 ~~e~fYyaqKaVihPt  178 (625)
T KOG1707|consen  163 VSELFYYAQKAVIHPT  178 (625)
T ss_pred             hHhhhhhhhheeeccC
Confidence            9999998887776544

>cd04169 RF3 RF3 subfamily

Probab=99.75  E-value=1.3e-16  Score=122.52  Aligned_cols=115  Identities=18%  Similarity=0.221  Sum_probs=79.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCC--------------------cccceeEEEEEEEECCeEEEEEEEeCCCch
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK--------------------STIGVEFATRSIRVEDKIVKAQIWDTAGQE   73 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (217)
                      -+|+++|++|+|||||+++|+...-.....                    ...+.+.......+.....++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            479999999999999999997532110000                    011233334444445555889999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      .|.......++.+|++++|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            8887777788999999999999875432 22334333332   4689999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.75  E-value=8.6e-17  Score=120.54  Aligned_cols=153  Identities=20%  Similarity=0.197  Sum_probs=96.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCc-----------------------ccceeEEEEEE-------------EEC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKS-----------------------TIGVEFATRSI-------------RVE   58 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~-------------~~~   58 (217)
                      ||+++|+.++|||||+++|..+.+......                       ..+++.....+             .+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999997655432110                       00111000000             011


Q ss_pred             CeEEEEEEEeCCCchhhhhhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894           59 DKIVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV  136 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  136 (217)
                      .....+.++||||++.|.......+.  .+|++++|+|+.....-. ...++..+..   .++|+++|+||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            12356899999999988765554453  789999999988764422 2333343333   45889999999998542211


Q ss_pred             --CHHHHHHHHHH--------------------------cCCcEEEeccCCCCCHHHHHHHHH
Q 027894          137 --STEDAKAFAER--------------------------ENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus       137 --~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                        ..++...+...                          ..+|+|.+||.+|+|+++++..|.
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence              11222222221                          124799999999999999887664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.74  E-value=2.1e-17  Score=123.38  Aligned_cols=166  Identities=17%  Similarity=0.233  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchhhhh-----hhHhhhcCCcE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA-----ITSAYYRGAVG   88 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~   88 (217)
                      ||+++|+.+|||||+.+.+..+..+.... -..+.+.....+.. ...+.+.+||+||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~-~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF-LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC-TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec-CCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            79999999999999998888765433221 11223333334432 2336899999999865433     45778899999


Q ss_pred             EEEEEeCCChhhHHHHHH---HHHHHhccCCCCCcEEEEEeCCCCCCcc--cC----CHHHHHHHHHHcC---CcEEEec
Q 027894           89 ALLVYDVTRHVTFENVER---WLKELRGHTDSNIVIMLVGNKADLRHLC--AV----STEDAKAFAEREN---TFFMETS  156 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~---~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~----~~~~~~~~~~~~~---~~~~~~S  156 (217)
                      +|||+|+...+-.+++..   .+..+.... ++..+.+++.|+|+..+.  ..    ..+.+.+.+...+   +.++.||
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            999999995444444444   444444444 789999999999985311  11    1122333344455   7799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhhcccc
Q 027894          157 ALESMNVENAFTEVLTQIYHVVSRKAL  183 (217)
Q Consensus       157 a~~~~~v~~~~~~i~~~~~~~~~~~~~  183 (217)
                      .++ +.+-+.|..|++.++.+.+.-+.
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~le~  184 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLSTLEN  184 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCCCCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHHHHH
Confidence            998 57999999999999877654433

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01850 CDC_Septin CDC/Septin

Probab=99.74  E-value=1e-16  Score=123.79  Aligned_cols=143  Identities=17%  Similarity=0.219  Sum_probs=94.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhh------
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY------   75 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------   75 (217)
                      ..++|+++|.+|+|||||+|+|++..+...          ...+.+.......+..++..+++.+|||||....      
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999999876543          2334445555556666777789999999993211      


Q ss_pred             ------------hh--------hhHhhhc--CCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           76 ------------RA--------ITSAYYR--GAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        76 ------------~~--------~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                                  ..        .....+.  .+|+++|+++.+... +... ..++..+.    ..+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~----~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence                        00        0001222  467888888876522 1111 23334443    3689999999999854


Q ss_pred             --cccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894          133 --LCAVSTEDAKAFAERENTFFMETSALE  159 (217)
Q Consensus       133 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                        +.........+.+..+++++|......
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence              222334556677778899998777643

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.73  E-value=2.5e-16  Score=116.19  Aligned_cols=159  Identities=13%  Similarity=0.176  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccce---eEEEEEEEECCeEEEEEEEeCCCchhhhh-----hhHhhhcC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV---EFATRSIRVEDKIVKAQIWDTAGQERYRA-----ITSAYYRG   85 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~   85 (217)
                      ++|+++|.+|+|||||+|.|.+.........+.+.   +.....+... ....+.+|||||......     +....+..
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            78999999999999999999986553322222121   1111111111 123689999999643211     11223567


Q ss_pred             CcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCccc-----------CCHHHHHHHH----HHcC
Q 027894           86 AVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHLCA-----------VSTEDAKAFA----EREN  149 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-----------~~~~~~~~~~----~~~~  149 (217)
                      +|+++++.+.  +  +... ..++..+..   .+.|+++|+||+|+....+           ...++..+.+    ...+
T Consensus        81 ~d~~l~v~~~--~--~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISST--R--FSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCC--C--CCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            8988887532  2  2222 344455544   2578999999999842111           0011111111    2222


Q ss_pred             ---CcEEEeccC--CCCCHHHHHHHHHHHHHHHhhc
Q 027894          150 ---TFFMETSAL--ESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       150 ---~~~~~~Sa~--~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                         .++|.+|+.  .+.++..+.+.|+..+.+++..
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence               358999998  5799999999999999887654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=4.6e-16  Score=125.68  Aligned_cols=157  Identities=17%  Similarity=0.219  Sum_probs=116.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC-eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +=|.++|+...|||||+..+-............+-......+..+. ....+.|+||||++.|..+...-..-+|.+++|
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV   85 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV   85 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence            4589999999999999999988887666656555555566665542 234689999999999999998888899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC---------CcEEEeccCCCCCH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN---------TFFMETSALESMNV  163 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~v  163 (217)
                      ++++|.---+..    ..+......+.|+++++||+|..+   ...+....-..+++         ..++++||++|+|+
T Consensus        86 Va~dDGv~pQTi----EAI~hak~a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi  158 (509)
T COG0532          86 VAADDGVMPQTI----EAINHAKAAGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI  158 (509)
T ss_pred             EEccCCcchhHH----HHHHHHHHCCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence            999985322222    222222337899999999999974   23333333333333         45999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027894          164 ENAFTEVLTQIYHV  177 (217)
Q Consensus       164 ~~~~~~i~~~~~~~  177 (217)
                      ++++..++-...-.
T Consensus       159 ~eLL~~ill~aev~  172 (509)
T COG0532         159 DELLELILLLAEVL  172 (509)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999887766555

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.72  E-value=1.3e-16  Score=131.67  Aligned_cols=154  Identities=24%  Similarity=0.207  Sum_probs=98.1

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC---------------------------------CcccceeEEEEEE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES---------------------------------KSTIGVEFATRSI   55 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~   55 (217)
                      +....++|+++|+.++|||||+.+|+...-....                                 ....+++..... 
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~-  101 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY-  101 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE-
Confidence            4566799999999999999999999764321110                                 011223332222 


Q ss_pred             EECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           56 RVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        56 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                       +.....++.+|||||++.|.......+..+|++++|+|+.....-+..+.+. .+...  ...++++++||+|+.+..+
T Consensus       102 -~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l--g~~~iIvvvNKiD~~~~~~  177 (474)
T PRK05124        102 -FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL--GIKHLVVAVNKMDLVDYSE  177 (474)
T ss_pred             -eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh--CCCceEEEEEeeccccchh
Confidence             3333467899999999988766666679999999999998753222222211 11111  1247889999999864222


Q ss_pred             CCHH----HHHHHHHHc----CCcEEEeccCCCCCHHHHH
Q 027894          136 VSTE----DAKAFAERE----NTFFMETSALESMNVENAF  167 (217)
Q Consensus       136 ~~~~----~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~  167 (217)
                      ...+    +...+.+..    ..+++++||++++|+.+.-
T Consensus       178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            1112    222333333    3679999999999998653

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.72  E-value=1.4e-16  Score=122.49  Aligned_cols=112  Identities=20%  Similarity=0.182  Sum_probs=78.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCC------------------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSL------------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   76 (217)
                      +|+++|++|+|||||+++|+...-..                  ......+++.....+.+.  ..++.+|||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence            58999999999999999997421100                  011222233333334343  4788999999998888


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      ..+...++.+|++++|+|+.+...-.. ...+..+..   .++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            888889999999999999987543222 233333332   5689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PLN03126 Elongation factor Tu; Provisional

Probab=99.72  E-value=4.6e-16  Score=128.06  Aligned_cols=150  Identities=15%  Similarity=0.104  Sum_probs=99.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcC------CC--------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEF------SL--------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER   74 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      .....++|+++|+.++|||||+++|+...-      ..        ......+++.......+.....++.+||+||++.
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            345679999999999999999999986211      00        0011223333333333333446789999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC---CHHHHHHHHHHc--
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV---STEDAKAFAERE--  148 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~--  148 (217)
                      |.......+..+|++++|+|+.+...-+..+ ++..+..   .++| +++++||+|+.+..+.   ..+++..+....  
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e-~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            9888888888999999999998765433323 3333332   3567 7789999998642211   122445555543  


Q ss_pred             ---CCcEEEeccCCCCC
Q 027894          149 ---NTFFMETSALESMN  162 (217)
Q Consensus       149 ---~~~~~~~Sa~~~~~  162 (217)
                         +++++++|+.++.+
T Consensus       233 ~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        233 PGDDIPIISGSALLALE  249 (478)
T ss_pred             CcCcceEEEEEcccccc
Confidence               46799999988753

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=6.8e-17  Score=124.80  Aligned_cols=147  Identities=18%  Similarity=0.206  Sum_probs=92.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCC------------------cccceeEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESK------------------STIGVEFATRSIRVEDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   76 (217)
                      +|+++|++|+|||||+++|+...-.....                  ...+.......+.+.+  .++.+|||||+..+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            58999999999999999997532111000                  1112222223333333  678999999998888


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEE--E
Q 027894           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFM--E  154 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~  154 (217)
                      ..+..++..+|++++|+|+++.........| ..+..   .+.|.++++||+|+...  ...+....+....+.+++  .
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~--~~~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA--DFDKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC--CHHHHHHHHHHHhCCCeEEEE
Confidence            8888889999999999999987655433333 23332   46899999999998653  122233344344454433  3


Q ss_pred             eccCCCCCHHHHHHH
Q 027894          155 TSALESMNVENAFTE  169 (217)
Q Consensus       155 ~Sa~~~~~v~~~~~~  169 (217)
                      +...++.++..+.+.
T Consensus       153 ip~~~~~~~~~~vd~  167 (268)
T cd04170         153 LPIGEGDDFKGVVDL  167 (268)
T ss_pred             ecccCCCceeEEEEc
Confidence            345555554444333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.71  E-value=2.9e-16  Score=120.29  Aligned_cols=166  Identities=21%  Similarity=0.108  Sum_probs=115.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh----hhhhHh---hhcC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY----RAITSA---YYRG   85 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~~---~~~~   85 (217)
                      ...|.+||.|++|||||++.++.........+.+++...--.+.+ ...-.+.+-|.||..+-    ..+-..   .+..
T Consensus       159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            456789999999999999999998766655565555555445544 22345899999993211    111122   2456


Q ss_pred             CcEEEEEEeCCChh---hHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCC
Q 027894           86 AVGALLVYDVTRHV---TFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALE  159 (217)
Q Consensus        86 ~d~ii~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~  159 (217)
                      +.++++|+|++..+   ..++......++..+..  .++|.+||+||+|+....+......+.+.+..++. .+++|+.+
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t  317 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT  317 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence            88999999998644   46666666666665543  68999999999997553333334444444444544 22299999


Q ss_pred             CCCHHHHHHHHHHHHHHHhh
Q 027894          160 SMNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~~~~~~  179 (217)
                      ++|++++...+.+.+.+...
T Consensus       318 ~~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         318 REGLDELLRALAELLEETKA  337 (369)
T ss_pred             ccCHHHHHHHHHHHHHHhhh
Confidence            99999999999999888864

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.71  E-value=6.2e-16  Score=117.62  Aligned_cols=158  Identities=22%  Similarity=0.205  Sum_probs=114.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh-------hhhhHhhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY-------RAITSAYY   83 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~   83 (217)
                      ....+|+++|+|++|||||++.|++........+.++.+...-.+.+.+  ..+++.|+||.-.-       ........
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            4567899999999999999999999887776667767777777777777  67899999983211       13345677


Q ss_pred             cCCcEEEEEEeCCChhh-HHHHHHHHHH----------------------------------------------------
Q 027894           84 RGAVGALLVYDVTRHVT-FENVERWLKE----------------------------------------------------  110 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s-~~~~~~~~~~----------------------------------------------------  110 (217)
                      ++||++++|+|+....+ .+.+...+..                                                    
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            99999999999985443 3333322222                                                    


Q ss_pred             --------------HhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          111 --------------LRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       111 --------------l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                                    +.... ..+|.++|.||+|+..     .++...+....  .++.+||..+.|++++.+.|.+.+--
T Consensus       219 ~Ir~dvTlDd~id~l~~nr-vY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         219 LIREDVTLDDLIDALEGNR-VYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             EEecCCcHHHHHHHHhhcc-eeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence                          10000 2589999999999743     34444444444  78999999999999999998887754


Q ss_pred             Hh
Q 027894          177 VV  178 (217)
Q Consensus       177 ~~  178 (217)
                      .+
T Consensus       291 iR  292 (365)
T COG1163         291 IR  292 (365)
T ss_pred             EE
Confidence            44

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.71  E-value=3.6e-16  Score=127.15  Aligned_cols=147  Identities=24%  Similarity=0.214  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCC---------------------------------CCcccceeEEEEEEEECCe
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLE---------------------------------SKSTIGVEFATRSIRVEDK   60 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~   60 (217)
                      +||+++|+.++|||||+.+|+...-...                                 .....+.+.....+  ...
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~--~~~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF--STD   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE--ccC
Confidence            5899999999999999999965321110                                 00112233333333  333


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC---
Q 027894           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS---  137 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~---  137 (217)
                      ..++.+|||||++.|.......+..+|++++|+|+.....-+..+.+. .+...  ...++++++||+|+.+.....   
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL--GIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc--CCCcEEEEEEecccccchHHHHHH
Confidence            467899999999988777777789999999999998754322222222 22211  234688899999986422111   


Q ss_pred             -HHHHHHHHHHcC---CcEEEeccCCCCCHHH
Q 027894          138 -TEDAKAFAEREN---TFFMETSALESMNVEN  165 (217)
Q Consensus       138 -~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~  165 (217)
                       .++...+....+   ++++++||++|+|+++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             122333334444   4699999999999886

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.71  E-value=8.3e-16  Score=124.63  Aligned_cols=147  Identities=17%  Similarity=0.152  Sum_probs=96.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC--------------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   76 (217)
                      ...++|+++|+.++|||||+++|++.....              ......+++.......+.....++.++||||+..|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            467999999999999999999998732100              000122334444444454445678999999998887


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEE-EEEeCCCCCCcccC---CHHHHHHHHHHc----
Q 027894           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRHLCAV---STEDAKAFAERE----  148 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~---~~~~~~~~~~~~----  148 (217)
                      ......+..+|++++|+|+.++..-++ ...+..+..   .+.|.+ +++||+|+.+..+.   ...++..+....    
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  165 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG  165 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence            777777899999999999987543222 233333332   357865 58999998642211   112344444443    


Q ss_pred             -CCcEEEeccCCCC
Q 027894          149 -NTFFMETSALESM  161 (217)
Q Consensus       149 -~~~~~~~Sa~~~~  161 (217)
                       +++++++||+++.
T Consensus       166 ~~~~iv~iSa~~g~  179 (396)
T PRK00049        166 DDTPIIRGSALKAL  179 (396)
T ss_pred             cCCcEEEeeccccc
Confidence             3679999999875

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.70  E-value=1.2e-15  Score=127.03  Aligned_cols=117  Identities=18%  Similarity=0.205  Sum_probs=80.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---------------C-----CcccceeEEEEEEEECCeEEEEEEEeCC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE---------------S-----KSTIGVEFATRSIRVEDKIVKAQIWDTA   70 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   70 (217)
                      ....+|+++|+.++|||||+++|+...-...               .     ....++++......+.....++.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            4567999999999999999999974211000               0     0011233333333333345789999999


Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      |+..|......+++.+|++++|+|+++.... ....++.....   .++|+++++||+|+.
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            9998887777788999999999999875432 22334333332   579999999999974

>PRK13351 elongation factor G; Reviewed

Probab=99.70  E-value=5.3e-16  Score=134.09  Aligned_cols=116  Identities=19%  Similarity=0.207  Sum_probs=83.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC--------C-----C-----CcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL--------E-----S-----KSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~--------~-----~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .+...+|+++|+.|+|||||+++|+...-..        .     .     ....++......+.+  ...++.+|||||
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG   82 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--DNHRINLIDTPG   82 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--CCEEEEEEECCC
Confidence            3456899999999999999999998632100        0     0     011122222223333  347899999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      +..+...+..+++.+|++++|+|+++.........| ..+..   .++|+++++||+|+.
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~  138 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRV  138 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCC
Confidence            998888889999999999999999987766655444 33332   468999999999985

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=4e-16  Score=125.69  Aligned_cols=166  Identities=20%  Similarity=0.225  Sum_probs=123.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC---------------CCCcccceeEEEEEEEE-CCeEEEEEEEeCCCchh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---------------ESKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQER   74 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~   74 (217)
                      +..-++.++-+...|||||..+|+...-..               +.....++.-....+.+ +++.+.+.++||||+-.
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            456789999999999999999997743211               11223333333333333 46678899999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHHHHHcCCcEE
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAFAERENTFFM  153 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~  153 (217)
                      |..-....+.-|+++++|+|++....-+....++..+.    .+..+|.|+||+|++..+.. ...+........+.+.+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            98878888889999999999999877777777777776    57789999999999763322 22334444444556799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894          154 ETSALESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       154 ~~Sa~~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      .+||++|.|+.++|+.|++.+......
T Consensus       214 ~vSAK~G~~v~~lL~AII~rVPpP~~~  240 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRVPPPKGI  240 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhCCCCCCC
Confidence            999999999999999999988765543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.69  E-value=1.8e-15  Score=102.23  Aligned_cols=106  Identities=25%  Similarity=0.273  Sum_probs=70.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh---------hhhhhHhhhc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER---------YRAITSAYYR   84 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~   84 (217)
                      ||+++|.+|+|||||+|+|++..... ...+..+.......+.+.+.  .+.++||||...         ........+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            69999999999999999999864322 22233333333445556664  457999999421         1111233348


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeC
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK  127 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK  127 (217)
                      .+|++++|+|.+++.. +....++..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999877422 33344445552    67999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.69  E-value=7.1e-16  Score=126.38  Aligned_cols=151  Identities=16%  Similarity=0.163  Sum_probs=101.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC--------------------------C---CCcccceeEEEEEEEECCeE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL--------------------------E---SKSTIGVEFATRSIRVEDKI   61 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|+.++|||||+.+|+...-..                          .   .....+++.......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            456899999999999999999886521100                          0   00111333333444445555


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHH-------HHHHHHHHHhccCCCCC-cEEEEEeCCCCCCc
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFE-------NVERWLKELRGHTDSNI-VIMLVGNKADLRHL  133 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~-p~iiv~nK~D~~~~  133 (217)
                      ..+.++|+||++.|.......+..+|++++|+|+.+. .|+       .....+..+..   .++ ++|+++||+|+...
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP  160 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch
Confidence            7899999999999999999999999999999999873 221       22222222222   356 46888999997521


Q ss_pred             c------cCCHHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Q 027894          134 C------AVSTEDAKAFAEREN-----TFFMETSALESMNVEN  165 (217)
Q Consensus       134 ~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  165 (217)
                      .      ....+++..++...+     ++++++||++|+|+.+
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            1      112355666666665     6799999999999854

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.69  E-value=9.8e-16  Score=119.99  Aligned_cols=81  Identities=19%  Similarity=0.258  Sum_probs=55.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV---------------------ED-KIVKAQIWDTAGQ-   72 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~l~Dt~G~-   72 (217)
                      |+++|.+++|||||+++|++........+..+.+...-...+                     ++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            589999999999999999998754322233322322222111                     22 3467999999996 


Q ss_pred             ---hhhhhhhHh---hhcCCcEEEEEEeCC
Q 027894           73 ---ERYRAITSA---YYRGAVGALLVYDVT   96 (217)
Q Consensus        73 ---~~~~~~~~~---~~~~~d~ii~v~d~~   96 (217)
                         ++...+...   .++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               344444333   489999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.6e-16  Score=109.24  Aligned_cols=155  Identities=16%  Similarity=0.274  Sum_probs=116.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .-|++++|-.|+|||||++.|......... ||  .......+.+.+  .+++.+|.+|+..-+..|..++..+|++++.
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PT--lHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PT--LHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccccccC-CC--cCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            358999999999999999999887654332 32  223344444555  7889999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH------cC-----------CcEEE
Q 027894           93 YDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER------EN-----------TFFME  154 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~-----------~~~~~  154 (217)
                      +|+.|.+-|.+....+..+..... ...|+++.+||+|.+.  ..++++.+.....      .+           +.++.
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm  172 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM  172 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence            999999999888776666655443 6899999999999875  3344443322211      11           24788


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 027894          155 TSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      +|...+.+..+.|.|+-+.+
T Consensus       173 csi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  173 CSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEccCccceeeeehhhhc
Confidence            99998888888888876543

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.69  E-value=7.4e-16  Score=131.90  Aligned_cols=154  Identities=22%  Similarity=0.169  Sum_probs=96.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------------Ccc-------------------cceeEEEEEEEE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES------------KST-------------------IGVEFATRSIRV   57 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~------------~~~-------------------~~~~~~~~~~~~   57 (217)
                      .....++|+++|++++|||||+++|+...-....            ..+                   .+++.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            4455689999999999999999999874321110            000                   011122222223


Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC
Q 027894           58 EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS  137 (217)
Q Consensus        58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~  137 (217)
                      .....++.++||||++.|.......+..+|++++|+|+..+..-+..+.+ ..+...  ...++++++||+|+.+.....
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~--~~~~iivvvNK~D~~~~~~~~  176 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL--GIRHVVLAVNKMDLVDYDQEV  176 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh--CCCeEEEEEEecccccchhHH
Confidence            33345788999999988876666678899999999999765432222221 122211  235788899999986411111


Q ss_pred             H----HHHHHHHHHcC---CcEEEeccCCCCCHHH
Q 027894          138 T----EDAKAFAEREN---TFFMETSALESMNVEN  165 (217)
Q Consensus       138 ~----~~~~~~~~~~~---~~~~~~Sa~~~~~v~~  165 (217)
                      .    .+...+....+   ++++++||+++.|+.+
T Consensus       177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1    22333444444   4599999999999875

>PLN03127 Elongation factor Tu; Provisional

Probab=99.68  E-value=2.7e-15  Score=122.89  Aligned_cols=161  Identities=17%  Similarity=0.132  Sum_probs=100.1

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC------cCCCC--------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRN------EFSLE--------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ....++|+++|+.++|||||+++|.+.      .....        .....+++.......+.....++.++||||+..|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            446799999999999999999999732      10000        0011233333444445445567899999999888


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccCC---HHHHHHHHHHc---
Q 027894           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAVS---TEDAKAFAERE---  148 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~---  148 (217)
                      .......+..+|++++|+|+.+...-++ ...+..+..   .++| +|+++||+|+.+..+..   ..+...+....   
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~  213 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP  213 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            7767667778999999999987543222 222233332   4577 57789999986422211   11233333332   


Q ss_pred             --CCcEEEeccC---CCCC-------HHHHHHHHHHHH
Q 027894          149 --NTFFMETSAL---ESMN-------VENAFTEVLTQI  174 (217)
Q Consensus       149 --~~~~~~~Sa~---~~~~-------v~~~~~~i~~~~  174 (217)
                        .++++++|+.   ++.|       +.++++.+.+.+
T Consensus       214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence              3678888876   4444       556666665544

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.68  E-value=4.3e-16  Score=116.20  Aligned_cols=163  Identities=20%  Similarity=0.223  Sum_probs=110.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch-------hhhhhhHhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-------RYRAITSAY   82 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~~~   82 (217)
                      ....++|+++|.+|+|||||||+|..+...+...-..+.+.........+. -.+.+||+||-+       +++.....+
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchhhhHHHHHHHHHH
Confidence            445689999999999999999999977665544333344433333322222 458999999943       377778889


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc-------cCCHHHHHHHHHH--------
Q 027894           83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC-------AVSTEDAKAFAER--------  147 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~-------~~~~~~~~~~~~~--------  147 (217)
                      +...|.++++++..|+.---+ +.+++.+.... -+.++++++|.+|....-       ......++++.++        
T Consensus       115 l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTD-EDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhhccEEEEeccCCCccccCC-HHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999998863222 34444444433 448899999999984320       0111112222211        


Q ss_pred             c--CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          148 E--NTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       148 ~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      .  =-|++..+.+.+.|++++...+++.+.
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            1  145788888999999999999988876

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.67  E-value=3.3e-15  Score=122.54  Aligned_cols=152  Identities=15%  Similarity=0.105  Sum_probs=98.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcC--CC---------------------------CCCcccceeEEEEEEEECCeE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEF--SL---------------------------ESKSTIGVEFATRSIRVEDKI   61 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|+.++|||||+.+|+...-  ..                           ......+.+.......+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            4568999999999999999999876210  00                           000111333333344445555


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHhccCCCCCc-EEEEEeCCCCCC--
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---F---ENVERWLKELRGHTDSNIV-IMLVGNKADLRH--  132 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~--  132 (217)
                      ..+.++||||+..|.......+..+|++++|+|+....-   +   ......+..+..   .++| +|+++||+|...  
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccch
Confidence            789999999999998888888999999999999987530   1   112222222222   3555 678999999532  


Q ss_pred             cc----cCCHHHHHHHHHHc-----CCcEEEeccCCCCCHHH
Q 027894          133 LC----AVSTEDAKAFAERE-----NTFFMETSALESMNVEN  165 (217)
Q Consensus       133 ~~----~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~  165 (217)
                      ..    ....+++..+....     +++++++|+.+|+|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            11    11123344444433     36799999999999864

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=3.5e-15  Score=120.37  Aligned_cols=159  Identities=17%  Similarity=0.155  Sum_probs=117.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ...-|.++|+...|||||+..|-+...........+-......+... ..-.++|.||||+..|..+...-..-.|++++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            34668899999999999999998887766554444444444445454 33678999999999999999888899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC---------CcEEEeccCCCCC
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN---------TFFMETSALESMN  162 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~  162 (217)
                      |+.+.|.--    .+....+......+.|+|+++||+|.++   .+.+...+-...+|         +.++++||++|+|
T Consensus       231 VVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n  303 (683)
T KOG1145|consen  231 VVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN  303 (683)
T ss_pred             EEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence            999998532    2222333333447899999999999764   34444444433333         4589999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027894          163 VENAFTEVLTQIYHVV  178 (217)
Q Consensus       163 v~~~~~~i~~~~~~~~  178 (217)
                      ++.+-+.++-...-+-
T Consensus       304 l~~L~eaill~Ae~md  319 (683)
T KOG1145|consen  304 LDLLEEAILLLAEVMD  319 (683)
T ss_pred             hHHHHHHHHHHHHHhh
Confidence            9999988876655443

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.67  E-value=1.6e-15  Score=124.14  Aligned_cols=163  Identities=18%  Similarity=0.143  Sum_probs=104.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccc--eeEEEE-------------EEEECC------------
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIG--VEFATR-------------SIRVED------------   59 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~--~~~~~~-------------~~~~~~------------   59 (217)
                      .+..++|+++|+...|||||+.+|++.....   +.....+  ..+...             ......            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            4567999999999999999999999743211   1111111  111100             000000            


Q ss_pred             ----eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894           60 ----KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        60 ----~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                          ....+.++|+||++.|.......+..+|++++|+|+.++. ..+..+.+ ..+...  .-.++|+|+||+|+.+..
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l--gi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM--KLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc--CCCcEEEEEecccccCHH
Confidence                0136899999999999888888888999999999998742 22222222 222221  224688999999986422


Q ss_pred             cC--CHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          135 AV--STEDAKAFAER---ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       135 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      ..  ..++..++...   .+.+++++||++++|++++++.|.+.+.
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            11  12333333332   3578999999999999999988886554

>TIGR00503 prfC peptide chain release factor 3

Probab=99.66  E-value=5.5e-15  Score=123.18  Aligned_cols=117  Identities=17%  Similarity=0.229  Sum_probs=80.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------------------CcccceeEEEEEEEECCeEEEEEEEeCC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES--------------------KSTIGVEFATRSIRVEDKIVKAQIWDTA   70 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   70 (217)
                      ....+|+++|++++|||||+++|+...-....                    ....++++......++....++.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            45679999999999999999998642110000                    0111334444444445555889999999


Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      |+..|.......++.+|++++|+|+++... .....++.....   .+.|+++++||+|+.
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            998887767778899999999999987522 122344443332   568999999999973

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.65  E-value=6.5e-15  Score=108.67  Aligned_cols=159  Identities=19%  Similarity=0.158  Sum_probs=94.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCC--cccceeEEEEEEEECCeEEEEEEEeCCCchhh-------h----hhhH
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK--STIGVEFATRSIRVEDKIVKAQIWDTAGQERY-------R----AITS   80 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~----~~~~   80 (217)
                      ++|+++|.+|+|||||+|.+++........  ...+.........+.+  ..+.++||||....       .    ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999986533221  2222333333333444  57899999994221       1    1112


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccC------CHHHHHHHHHHcCCcE
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAV------STEDAKAFAERENTFF  152 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~  152 (217)
                      .....+|++++|+++.+ .+-++ ...+..+....+  .-.++++++|+.|......+      .....+.+.+..+-.|
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            22467899999999877 33222 233344433322  12578889999997542211      1134555555556556


Q ss_pred             EEeccC-----CCCCHHHHHHHHHHHHHH
Q 027894          153 METSAL-----ESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       153 ~~~Sa~-----~~~~v~~~~~~i~~~~~~  176 (217)
                      +..+.+     .+.++.++++.|.+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            555544     456666666666665554

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=8.8e-16  Score=122.47  Aligned_cols=167  Identities=23%  Similarity=0.193  Sum_probs=108.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-h------h--hhhH
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-Y------R--AITS   80 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~------~--~~~~   80 (217)
                      -+..++|+++|.||+|||||+|.|.+......+ +-.|++.......++-..+++.+.||+|..+ -      .  ....
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence            345699999999999999999999999876654 3334444444444444448899999999543 1      0  1123


Q ss_pred             hhhcCCcEEEEEEeCC--ChhhHHHHHHHHHHHhccCC------CCCcEEEEEeCCCCCCc-ccCCHHHHHHHHHHc---
Q 027894           81 AYYRGAVGALLVYDVT--RHVTFENVERWLKELRGHTD------SNIVIMLVGNKADLRHL-CAVSTEDAKAFAERE---  148 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~--~~~s~~~~~~~~~~l~~~~~------~~~p~iiv~nK~D~~~~-~~~~~~~~~~~~~~~---  148 (217)
                      ..+..+|++++|+|+.  +-.+...+...+........      ...+++++.||.|+... .+..... ..+....   
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~  422 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRS  422 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCc
Confidence            3467899999999994  33333333444444433221      34789999999999653 1122111 1111111   


Q ss_pred             CCc-EEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          149 NTF-FMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       149 ~~~-~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      ..+ +.++|+++++|++++.+.+.+.+....
T Consensus       423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  423 VFPIVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             ccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence            133 566999999999999998888777655

>PRK12739 elongation factor G; Reviewed

Probab=99.64  E-value=1.3e-14  Score=125.21  Aligned_cols=116  Identities=16%  Similarity=0.141  Sum_probs=82.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC------------------CCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL------------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .+...+|+++|+.++|||||+++|+...-..                  ......+.+.....+.+.+  .++.++||||
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG   82 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG   82 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence            3456789999999999999999997531100                  0112333444444444444  6789999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      +..+...+...++.+|++++|+|+.+....++. ..+..+..   .++|+++++||+|+.
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~  138 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRI  138 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence            988887888889999999999999886543333 23333332   568999999999985

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.63  E-value=5e-15  Score=97.25  Aligned_cols=136  Identities=21%  Similarity=0.234  Sum_probs=99.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC----chhhhhhhHhhhcCCcEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----QERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~ii   90 (217)
                      ||+++|..|+|||||.+.+.+....  +..|..       +.+.+.    -.+||||    +..+.+........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7999999999999999999886642  222222       223221    3689999    4566666777788999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE  169 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~  169 (217)
                      +|-.+.++.|.     +-..+...  ...|+|-|++|.|+.+  ....+..+++..+.|.. +|++|+.++.|+++++..
T Consensus        70 ~v~~and~~s~-----f~p~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESR-----FPPGFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCcccc-----CCcccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            99999998651     11122222  2355899999999975  34556777888888864 999999999999999987


Q ss_pred             HHH
Q 027894          170 VLT  172 (217)
Q Consensus       170 i~~  172 (217)
                      +..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            754

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=8.5e-15  Score=116.47  Aligned_cols=161  Identities=20%  Similarity=0.218  Sum_probs=118.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcC---------------CCCCCcccceeEEEEEEEE---CCeEEEEEEEeCCCch
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEF---------------SLESKSTIGVEFATRSIRV---EDKIVKAQIWDTAGQE   73 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~   73 (217)
                      ..-+..++.+-..|||||..|++...-               ........++.-....+.+   ++..+.+.++||||+-
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV   87 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   87 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence            344678899999999999999976421               1112233334334444433   4577999999999998


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH-HHHHHHcCCc-
Q 027894           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA-KAFAERENTF-  151 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-~~~~~~~~~~-  151 (217)
                      .|.--....+..|.++++|+|++..-.-+.+.+.+..+.    .+.-++.|+||+|++...   .+.. .+.-.-.|+. 
T Consensus        88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Ad---pervk~eIe~~iGid~  160 (603)
T COG0481          88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAAD---PERVKQEIEDIIGIDA  160 (603)
T ss_pred             ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCC---HHHHHHHHHHHhCCCc
Confidence            776666667788999999999999887778888888887    567799999999997632   2222 2333334544 


Q ss_pred             --EEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 027894          152 --FMETSALESMNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       152 --~~~~Sa~~~~~v~~~~~~i~~~~~~~~~  179 (217)
                        .+-+||++|.|++++++.|++.+.+...
T Consensus       161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g  190 (603)
T COG0481         161 SDAVLVSAKTGIGIEDVLEAIVEKIPPPKG  190 (603)
T ss_pred             chheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence              7889999999999999999999876653

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.62  E-value=1.2e-15  Score=109.20  Aligned_cols=115  Identities=27%  Similarity=0.367  Sum_probs=70.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHh---hhcCCcEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQERYRAITSA---YYRGAVGA   89 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~i   89 (217)
                      -.|+++|+.|+|||+|+..|..+.......+.   .... ...+ ......+.++|+||+++.+.....   +...+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            46899999999999999999998654433222   1111 1111 223346899999999887754433   47889999


Q ss_pred             EEEEeCCC-hhhHHHHHHHH-HHHhcc--CCCCCcEEEEEeCCCCCC
Q 027894           90 LLVYDVTR-HVTFENVERWL-KELRGH--TDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        90 i~v~d~~~-~~s~~~~~~~~-~~l~~~--~~~~~p~iiv~nK~D~~~  132 (217)
                      |||+|.+. ...+.++..++ .-+...  ....+|++|++||.|+..
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            99999974 44455554433 333221  236799999999999854

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.62  E-value=2.7e-15  Score=119.85  Aligned_cols=172  Identities=17%  Similarity=0.172  Sum_probs=123.1

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc-----hhhh----hhhH
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ-----ERYR----AITS   80 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----~~~~----~~~~   80 (217)
                      -+..-.++++|.|++|||||++.++.......+.++++.....-++  +.+..+.+++||||.     +...    ....
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence            3456788999999999999999999988776665555544444444  333467899999992     1110    1112


Q ss_pred             hhhcCCcEEEEEEeCCC--hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH---HHHHHHHHcCCcEEEe
Q 027894           81 AYYRGAVGALLVYDVTR--HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE---DAKAFAERENTFFMET  155 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~  155 (217)
                      .+.+--.+|+|+.|++.  +.|.++...++..+.... .+.|.|+|+||+|+.....+.++   .+..+....+++++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            22333456999999986  456666666777776655 78999999999999654444443   3344444556899999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhhccccC
Q 027894          156 SALESMNVENAFTEVLTQIYHVVSRKALD  184 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~  184 (217)
                      |+.+.+|+-++-...++.+++++......
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa~RVE~Klk  350 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLAARVEQKLK  350 (620)
T ss_pred             cccchhceeeHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998766443

>PRK09866 hypothetical protein; Provisional

Probab=99.61  E-value=8.5e-14  Score=115.57  Aligned_cols=108  Identities=14%  Similarity=0.160  Sum_probs=73.5

Q ss_pred             EEEEEeCCCchh-----hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC
Q 027894           63 KAQIWDTAGQER-----YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS  137 (217)
Q Consensus        63 ~~~l~Dt~G~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~  137 (217)
                      ++.++||||...     +.......+..+|+++||+|.....+..+. .....+.... ...|+++|+||+|+.+.....
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~-K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG-QSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence            578999999532     233344578999999999999875444332 2334444322 236999999999986433333


Q ss_pred             HHHHHHHHH----HcC---CcEEEeccCCCCCHHHHHHHHHH
Q 027894          138 TEDAKAFAE----REN---TFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus       138 ~~~~~~~~~----~~~---~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      .+....+..    ...   ..+|++||+.+.|++++++.|.+
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            455555432    222   24999999999999999998887

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.61  E-value=2.5e-14  Score=123.61  Aligned_cols=117  Identities=16%  Similarity=0.169  Sum_probs=83.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-----CC-------------CcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-----ES-------------KSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .+...+|+++|++++|||||+++|+...-..     ..             ....+.+.....+.+.+  .++.+|||||
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG   84 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG   84 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence            4456699999999999999999997532111     00             12223333344444444  7899999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      +..+...+...++.+|++++|+|+.+....+....| ..+..   .+.|+++++||+|+..
T Consensus        85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence            988877788889999999999999986655443333 33332   4689999999999864

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.60  E-value=9.7e-14  Score=111.96  Aligned_cols=83  Identities=19%  Similarity=0.319  Sum_probs=56.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV---------------------E-DKIVKAQIWDTAG   71 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~Dt~G   71 (217)
                      ++|+++|.+|+|||||+++|++........+..+.+...-...+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999998765433233333333322211                     1 2236789999999


Q ss_pred             c----hhhhhhhHhh---hcCCcEEEEEEeCC
Q 027894           72 Q----ERYRAITSAY---YRGAVGALLVYDVT   96 (217)
Q Consensus        72 ~----~~~~~~~~~~---~~~~d~ii~v~d~~   96 (217)
                      .    .....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    2233333344   78999999999996

>PRK00007 elongation factor G; Reviewed

Probab=99.59  E-value=1.1e-13  Score=119.48  Aligned_cols=116  Identities=17%  Similarity=0.178  Sum_probs=80.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCC--C---C-------------CCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFS--L---E-------------SKSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~--~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .+...+|+++|++++|||||+++|+...-.  .   .             .....+.+.....+.+.+  .++.++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence            445679999999999999999999742110  0   0             112233333344444443  6799999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      +..+.......+..+|++++|+|+...-..++...| ..+..   .+.|+++++||+|+.
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~---~~~p~iv~vNK~D~~  140 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK---YKVPRIAFVNKMDRT  140 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            987776677778899999999999876544443333 33332   468899999999985

>PRK12740 elongation factor G; Reviewed

Probab=99.58  E-value=1.2e-13  Score=119.41  Aligned_cols=107  Identities=20%  Similarity=0.244  Sum_probs=75.6

Q ss_pred             EcCCCCChHHHHHHHhhCcCCCC------------------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhH
Q 027894           19 IGDSGVGKSNLLSRFTRNEFSLE------------------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus        19 vG~~~~GKtsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      +|+.++|||||+++|+...-...                  .....++......+.+.+  ..+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            69999999999999965321100                  012223333333444444  7899999999988877788


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      ..+..+|++++|+|+++.........| ..+..   .+.|+++|+||+|+.
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            889999999999999987665544333 33332   468999999999985

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=8.6e-14  Score=109.39  Aligned_cols=157  Identities=20%  Similarity=0.148  Sum_probs=102.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcC--CC---------------C------------CCcccceeEEEEEEEECCe
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEF--SL---------------E------------SKSTIGVEFATRSIRVEDK   60 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~--~~---------------~------------~~~~~~~~~~~~~~~~~~~   60 (217)
                      ....++++++|+..+|||||+-+|+...-  +.               .            ....-|.+.......+...
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            34679999999999999999999865311  00               0            0011244444444445445


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh---HH--HHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---FE--NVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      .+.++++|+||+..|-......+.+||+.++|+|+.+.+.   |.  ..-+.+..+.+.. .-..+|+++||+|..+-.+
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wde  162 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccCH
Confidence            5789999999999999889889999999999999988641   11  1112222222222 2345788899999975222


Q ss_pred             CCHH----HHHHHHHHcC-----CcEEEeccCCCCCHHHHH
Q 027894          136 VSTE----DAKAFAEREN-----TFFMETSALESMNVENAF  167 (217)
Q Consensus       136 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~  167 (217)
                      ...+    +...+.+..+     ++|+++|+..|+|+.+.-
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence            2222    2233333333     569999999999987644

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.54  E-value=2.9e-13  Score=103.17  Aligned_cols=181  Identities=22%  Similarity=0.359  Sum_probs=126.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhHhhhcCC---
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE--DKIVKAQIWDTAGQERYRAITSAYYRGA---   86 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---   86 (217)
                      ..-+|+|+|..++||||||.+|.+.+   ...+..+..+-...+.-+  +...++.+|-..|...+..+....+...   
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            45689999999999999999998876   333445555555544332  3346788999999776666665554432   


Q ss_pred             -cEEEEEEeCCChhh-HHHHHHHHHHHhcc--------------------------------------------------
Q 027894           87 -VGALLVYDVTRHVT-FENVERWLKELRGH--------------------------------------------------  114 (217)
Q Consensus        87 -d~ii~v~d~~~~~s-~~~~~~~~~~l~~~--------------------------------------------------  114 (217)
                       -.+|++.|++++.+ ++.+..|...+..+                                                  
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence             35788999999854 45566665443321                                                  


Q ss_pred             -----------CCCCCcEEEEEeCCCCC----CcccC-------CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894          115 -----------TDSNIVIMLVGNKADLR----HLCAV-------STEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus       115 -----------~~~~~p~iiv~nK~D~~----~~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                                 .+-++|+++|++|+|..    .+.+.       ....++.||..+|..++++|++...|++-+..+|++
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                       00258999999999983    22222       235567889999999999999999999999999999


Q ss_pred             HHHHHhh-ccccCCCCCCCCCCCC
Q 027894          173 QIYHVVS-RKALDIGGDPAALPKG  195 (217)
Q Consensus       173 ~~~~~~~-~~~~~~~~~~~~~~~~  195 (217)
                      .++-.-- -....++.+..++|-|
T Consensus       288 r~yG~~fttpAlVVEkdaVfIPAG  311 (473)
T KOG3905|consen  288 RSYGFPFTTPALVVEKDAVFIPAG  311 (473)
T ss_pred             HhcCcccCCcceEeecceeEeccC
Confidence            8875432 2244456666666655

>cd00066 G-alpha G protein alpha subunit

Probab=99.53  E-value=6.1e-13  Score=104.87  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=85.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHhccCC-CCCcEEEEEeCCC
Q 027894           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------VTFENVERWLKELRGHTD-SNIVIMLVGNKAD  129 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D  129 (217)
                      .+.+.+||++|+...+..|..++.++++++||+|+++.          ..+.+....+..+..... .+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            36789999999999999999999999999999999974          334444344444443332 6899999999999


Q ss_pred             CCCcc----------------cCCHHHHHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          130 LRHLC----------------AVSTEDAKAFAER----------ENTFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       130 ~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      +..++                ....+.+..+...          ..+..+.++|.+-.+++.+|+.+.+.+....
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            73110                2234444444332          2345678899999999999999998887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.51  E-value=1.1e-13  Score=119.85  Aligned_cols=118  Identities=17%  Similarity=0.163  Sum_probs=81.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC---------------cCCCC---CCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRN---------------EFSLE---SKSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .+...+|+++|+.++|||||+++|+..               .+.+.   ...|.........+...+...++.+|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            345689999999999999999999753               11110   111222222222333566678899999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      +..|.......++.+|++++|+|+.+....+....|. .+..   .+.|+++++||+|..
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~  151 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK---ENVKPVLFINKVDRL  151 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH---cCCCEEEEEEChhcc
Confidence            9888877888899999999999998754333322232 2222   457888999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.51  E-value=3.9e-13  Score=103.53  Aligned_cols=151  Identities=25%  Similarity=0.241  Sum_probs=105.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------C---------------------CcccceeEEEEEEEEC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------S---------------------KSTIGVEFATRSIRVE   58 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------~---------------------~~~~~~~~~~~~~~~~   58 (217)
                      ....+|.+.+|...-||||||-||+.......          +                     ....|++..+.+..+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            44678999999999999999999977432110          0                     1122555555555555


Q ss_pred             CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH--HHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894           59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV--ERWLKELRGHTDSNIVIMLVGNKADLRHLCAV  136 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  136 (217)
                      ....+|++-||||+++|..+...-...||++|+++|+...- ++..  ..++..+.    .-..+++++||+|+.+-.+.
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLL----GIrhvvvAVNKmDLvdy~e~  157 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLL----GIRHVVVAVNKMDLVDYSEE  157 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHh----CCcEEEEEEeeecccccCHH
Confidence            55578999999999999988888888999999999984432 2222  12333333    33568889999999764433


Q ss_pred             CH----HHHHHHHHHcCCc---EEEeccCCCCCHHH
Q 027894          137 ST----EDAKAFAERENTF---FMETSALESMNVEN  165 (217)
Q Consensus       137 ~~----~~~~~~~~~~~~~---~~~~Sa~~~~~v~~  165 (217)
                      ..    .+...|+.+.++.   ++++||+.|+|+-.
T Consensus       158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            32    4455677777754   99999999988754

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.50  E-value=5.6e-13  Score=101.29  Aligned_cols=122  Identities=19%  Similarity=0.207  Sum_probs=73.3

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchhhh-------hh-
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-------AI-   78 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~-   78 (217)
                      +..+..++|+|+|.+|+|||||+|+|++........ ...+..........++  ..+.+|||||.....       .. 
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~  103 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL  103 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence            345678999999999999999999999986543321 1222333333333344  678999999953221       00 


Q ss_pred             --hHhhhc--CCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCC--CCcEEEEEeCCCCCC
Q 027894           79 --TSAYYR--GAVGALLVYDVTRHV-TFENVERWLKELRGHTDS--NIVIMLVGNKADLRH  132 (217)
Q Consensus        79 --~~~~~~--~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~--~~p~iiv~nK~D~~~  132 (217)
                        ...++.  ..|++++|..++... ...+ ..++..+....+.  -.++++|.||+|...
T Consensus       104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence              112332  578888887665432 2221 2333444333221  256899999999853

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=6.3e-13  Score=95.59  Aligned_cols=113  Identities=21%  Similarity=0.299  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc---CCcEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR---GAVGAL   90 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~ii   90 (217)
                      -.|+++|..+||||+|+-+|..+.+.....+   +......+.+...  .+.++|.||+.+.+.-...+++   .+-+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            5789999999999999999988855443311   2222333333332  2799999999988876666666   788999


Q ss_pred             EEEeCCC-hhhHHHHHH-HHHHHhcc--CCCCCcEEEEEeCCCCC
Q 027894           91 LVYDVTR-HVTFENVER-WLKELRGH--TDSNIVIMLVGNKADLR  131 (217)
Q Consensus        91 ~v~d~~~-~~s~~~~~~-~~~~l~~~--~~~~~p~iiv~nK~D~~  131 (217)
                      ||+|... .....++.. ++.-+...  ....+|++++.||.|+.
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            9999764 223444433 44444433  24778999999999984

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.50  E-value=7.4e-13  Score=107.86  Aligned_cols=169  Identities=18%  Similarity=0.200  Sum_probs=126.0

Q ss_pred             cCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc
Q 027894            5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus         5 ~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      +.+......+++.++|+.++|||.|++.|+++.+......+....+....+...+....+.+-|.+-. ....+...- .
T Consensus       417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~  494 (625)
T KOG1707|consen  417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A  494 (625)
T ss_pred             ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence            44556778999999999999999999999999888766667667777777777777777888887754 222222111 6


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCH
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNV  163 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  163 (217)
                      .||+++++||.+++.+|+.+...++.....  ...|+++|++|+|+.+..+...-...+++.+++++ .+.+|.+.... 
T Consensus       495 ~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-  571 (625)
T KOG1707|consen  495 ACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-  571 (625)
T ss_pred             eeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence            799999999999999999887766554433  68999999999999764433333337888888876 55567764333 


Q ss_pred             HHHHHHHHHHHHHHh
Q 027894          164 ENAFTEVLTQIYHVV  178 (217)
Q Consensus       164 ~~~~~~i~~~~~~~~  178 (217)
                      .++|..|...+....
T Consensus       572 ~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  572 NELFIKLATMAQYPH  586 (625)
T ss_pred             chHHHHHHHhhhCCC
Confidence            889988887765443

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.49  E-value=1.1e-12  Score=107.42  Aligned_cols=185  Identities=21%  Similarity=0.379  Sum_probs=125.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhHhhhcCC--
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE--DKIVKAQIWDTAGQERYRAITSAYYRGA--   86 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~--   86 (217)
                      ...-.|+|+|..++||||||.+|.+..   .+.++.+++|....+.-+  +...++.+|-..|...+..+....+...  
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            445689999999999999999997654   233555666655554332  2235789999988666666655544422  


Q ss_pred             --cEEEEEEeCCChhhHH-HHHHHHHHHhcc-------------------------------C-----------------
Q 027894           87 --VGALLVYDVTRHVTFE-NVERWLKELRGH-------------------------------T-----------------  115 (217)
Q Consensus        87 --d~ii~v~d~~~~~s~~-~~~~~~~~l~~~-------------------------------~-----------------  115 (217)
                        -.+++|+|.+.|..+- .+..|+..+..+                               .                 
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence              3688999999986543 444444332210                               0                 


Q ss_pred             --------------CCCCcEEEEEeCCCCCC----cc-------cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894          116 --------------DSNIVIMLVGNKADLRH----LC-------AVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus       116 --------------~~~~p~iiv~nK~D~~~----~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                                    +-++|++||++|+|...    +.       .....-++.+|..+|+.++++|++...+++.++..|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence                          01489999999999732    11       122344678888999999999999999999999999


Q ss_pred             HHHHHHHhhc-cccCCCCCCCCCCCC-cee
Q 027894          171 LTQIYHVVSR-KALDIGGDPAALPKG-QTI  198 (217)
Q Consensus       171 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~  198 (217)
                      .+.++...-. .......+.-++|.| |+.
T Consensus       260 ~h~l~~~~f~~~~~vv~~d~ifIP~GwDs~  289 (472)
T PF05783_consen  260 LHRLYGFPFKTPAQVVERDAIFIPAGWDSW  289 (472)
T ss_pred             HHHhccCCCCCCceeecccccccCCCCCCH
Confidence            9888765533 234456667777777 443

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.49  E-value=1e-12  Score=101.44  Aligned_cols=120  Identities=15%  Similarity=0.092  Sum_probs=70.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchhhhh-------hhHhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA-------ITSAY   82 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~   82 (217)
                      ...++|+++|.+|+||||++|+|++........ ...+...........+  .++.+|||||......       ....+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            567999999999999999999999887533221 1112222222222343  6799999999543211       11111


Q ss_pred             h--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCC
Q 027894           83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRH  132 (217)
Q Consensus        83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~  132 (217)
                      +  ...|+++||.+++.....+.-...+..+....+  --.+.|+++|+.|...
T Consensus       114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence            1  268999999665432211111223333333222  2256899999999754

>PTZ00258 GTP-binding protein; Provisional

Probab=99.49  E-value=1.2e-12  Score=104.71  Aligned_cols=86  Identities=20%  Similarity=0.203  Sum_probs=60.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeE---------------EEEEEEeCCCchh-
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI---------------VKAQIWDTAGQER-   74 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~-   74 (217)
                      ...++|+++|.||+|||||+|+|++........+..+.+.....+.+.+..               .++.++|+||... 
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            456899999999999999999998877655444555555555555554322               3589999999421 


Q ss_pred             ------hhhhhHhhhcCCcEEEEEEeCC
Q 027894           75 ------YRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        75 ------~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                            ........++.+|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                  1112233467899999999973

>smart00275 G_alpha G protein alpha subunit

Probab=99.47  E-value=3.6e-12  Score=101.28  Aligned_cols=117  Identities=17%  Similarity=0.185  Sum_probs=84.6

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCC
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------VTFENVERWLKELRGHTD-SNIVIMLVGNKADL  130 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~  130 (217)
                      ..+.+||.+|+...+..|..++.++++++||+|+++.          ..+.+....+..+..... .+.|+++++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            5689999999999999999999999999999999973          234444444444444322 67999999999998


Q ss_pred             CCcc---------------cCCHHHHHHHHHH-----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          131 RHLC---------------AVSTEDAKAFAER-----------ENTFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       131 ~~~~---------------~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      ..+.               ....+.+..+...           ..+.++.++|.+-.++..+|+.+...+....
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            3110               1233444444322           1244678889999999999999888877654

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.47  E-value=5.4e-12  Score=111.57  Aligned_cols=144  Identities=17%  Similarity=0.168  Sum_probs=96.7

Q ss_pred             hHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeE----------------EEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI----------------VKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        26 Ktsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ||||+.++-+...........+-......++.+...                -.+.+|||||++.|..+....+..+|++
T Consensus       474 KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDiv  553 (1049)
T PRK14845        474 NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLA  553 (1049)
T ss_pred             cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEE
Confidence            999999999988766555555544444445443110                1279999999999988877788889999


Q ss_pred             EEEEeCCC---hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC----------------HHHHH----HH--
Q 027894           90 LLVYDVTR---HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS----------------TEDAK----AF--  144 (217)
Q Consensus        90 i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~----------------~~~~~----~~--  144 (217)
                      ++|+|+++   +.+++.+.    .+..   .++|+++|+||+|+.......                ..+..    .+  
T Consensus       554 lLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~  626 (1049)
T PRK14845        554 VLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG  626 (1049)
T ss_pred             EEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence            99999987   34433332    2222   358999999999985321100                00010    00  


Q ss_pred             -HHH---------------cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          145 -AER---------------ENTFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       145 -~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                       ...               ..++++++||++|+|+++++.+|......
T Consensus       627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~  674 (1049)
T PRK14845        627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK  674 (1049)
T ss_pred             HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence             011               13579999999999999999887655443

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=2.8e-13  Score=103.12  Aligned_cols=166  Identities=20%  Similarity=0.166  Sum_probs=113.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEE------------------EEEEEEC------CeEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFA------------------TRSIRVE------DKIVK   63 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~~------~~~~~   63 (217)
                      +..++|.++|+...|||||.++|.+--...   ......++...                  ...-...      .-..+
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            678999999999999999999997732111   11111111000                  0000000      11246


Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc--cCCHHHH
Q 027894           64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC--AVSTEDA  141 (217)
Q Consensus        64 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~  141 (217)
                      +.|+|.||++-......+-..-.|++++|++++.+........-+..+....  -..+|++=||+|+....  ..+++++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            7899999999888777777777899999999998665444444444443332  35588899999996422  2345677


Q ss_pred             HHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          142 KAFAER---ENTFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       142 ~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      ++|.+.   .+.|++++||..+.|++.+++.|.+++....
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~  205 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence            777765   4678999999999999999998888776443

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2.3e-12  Score=99.09  Aligned_cols=164  Identities=16%  Similarity=0.168  Sum_probs=105.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCc----CCC---CCCcccceeEEEEEEEE-------CCeEEEEEEEeCCCchhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE----FSL---ESKSTIGVEFATRSIRV-------EDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~----~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~   75 (217)
                      .+..+++.++|+..||||||.++|..-.    |..   +.....+.+..-..+.+       .+..+++.++|+||+...
T Consensus         4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL   83 (522)
T KOG0461|consen    4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL   83 (522)
T ss_pred             CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence            3456999999999999999999997632    111   22223333333333322       244578899999999887


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHH-HHHhccCCCCCcEEEEEeCCCCCCcccCC---HHHHHHHHHH----
Q 027894           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWL-KELRGHTDSNIVIMLVGNKADLRHLCAVS---TEDAKAFAER----  147 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~----  147 (217)
                      -........-.|..++|+|+.....-+.++.++ ..+.     -...++|+||+|...+....   ....+...+.    
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            777777777789999999998765444444432 2222     23367788999985432211   1122222221    


Q ss_pred             ---cCCcEEEeccCCC----CCHHHHHHHHHHHHHHHh
Q 027894          148 ---ENTFFMETSALES----MNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       148 ---~~~~~~~~Sa~~~----~~v~~~~~~i~~~~~~~~  178 (217)
                         -+.|++++|+..|    +++.++.+.+..++++..
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~  196 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK  196 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence               1278999999999    677777766666666544

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.46  E-value=1.3e-12  Score=97.50  Aligned_cols=160  Identities=19%  Similarity=0.166  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCC--cccceeEEEEEEEECCeEEEEEEEeCCCch-------hhhh-h---hH
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK--STIGVEFATRSIRVEDKIVKAQIWDTAGQE-------RYRA-I---TS   80 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~-~---~~   80 (217)
                      ++|+++|.+|+||||++|.+++........  ...+.........+.+  ..+.++||||..       .... +   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999987644332  2223334444445666  568999999921       1111 1   12


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCC-------HHHHHHHHHHcCCc
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVS-------TEDAKAFAERENTF  151 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  151 (217)
                      ......+++++|+.+.. -+-.+. ..+..+....+  --..++||.|..|......+.       ...++.+.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~r-~t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGR-FTEEDR-EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCc-chHHHH-HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            23456899999999883 232222 22222222222  124588888888865433211       12345566667777


Q ss_pred             EEEeccC------CCCCHHHHHHHHHHHHHHH
Q 027894          152 FMETSAL------ESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       152 ~~~~Sa~------~~~~v~~~~~~i~~~~~~~  177 (217)
                      |+..+.+      ....+.++++.|-+.+.+.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            8877777      2345666666665555544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.45  E-value=2.3e-12  Score=102.59  Aligned_cols=163  Identities=15%  Similarity=0.176  Sum_probs=112.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC--------------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      .-+|+++.+...|||||+..|+.+.-.-              .....-|++.-.+...+.....++.++||||+..|..-
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            3589999999999999999998863211              11122245544444444455588999999999999888


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC-HHHHHHHH-------HHcCC
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS-TEDAKAFA-------ERENT  150 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~-------~~~~~  150 (217)
                      ....+.=+|++++++|+.+..--+ ....+.....   .+.+.|+|+||+|.+..+... .++...+.       .+.++
T Consensus        85 VERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            888899999999999998854211 1222222222   566778899999997644221 12333333       24678


Q ss_pred             cEEEeccCCC----------CCHHHHHHHHHHHHHHHhh
Q 027894          151 FFMETSALES----------MNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       151 ~~~~~Sa~~~----------~~v~~~~~~i~~~~~~~~~  179 (217)
                      |+++.|++.|          .++.-+|+.|++++.+...
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~  199 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG  199 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence            9999999876          4688899988888876553

>PRK13768 GTPase; Provisional

Probab=99.44  E-value=1.2e-12  Score=100.13  Aligned_cols=110  Identities=17%  Similarity=0.086  Sum_probs=69.7

Q ss_pred             EEEEEeCCCchhh---hhhhHhhhc---C--CcEEEEEEeCCChhhHHHHH--HHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           63 KAQIWDTAGQERY---RAITSAYYR---G--AVGALLVYDVTRHVTFENVE--RWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        63 ~~~l~Dt~G~~~~---~~~~~~~~~---~--~d~ii~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      .+.+||+||+.+.   ...+..+++   .  .+++++++|........+..  .|+....... .+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcC
Confidence            6899999997553   233322322   2  88999999997654433322  2222111111 4789999999999864


Q ss_pred             cccCCHHHHHH----------------------------HHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          133 LCAVSTEDAKA----------------------------FAEREN--TFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       133 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      ..+.  ++...                            .....+  .+++++|+++++|+++++++|.+.+.
T Consensus       177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            3221  11111                            122233  57899999999999999999988764

>TIGR00101 ureG urease accessory protein UreG

Probab=99.44  E-value=4.9e-12  Score=93.19  Aligned_cols=102  Identities=14%  Similarity=0.069  Sum_probs=64.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  141 (217)
                      ....++++.|..-...... .  -+|.++.|+|+.+..+...  .+...+.      .--++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence            4567788888321111111 1  1577999999987765321  1112221      11288999999974322333444


Q ss_pred             HHHHHH--cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          142 KAFAER--ENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       142 ~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      .+..+.  .+.+++++||++|+|++++|++|.+++
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            444443  457899999999999999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=5.5e-13  Score=111.11  Aligned_cols=165  Identities=18%  Similarity=0.196  Sum_probs=113.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC------------C----eEEEEEEEeCCCchhhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE------------D----KIVKAQIWDTAGQERYR   76 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~l~Dt~G~~~~~   76 (217)
                      ..=|+|+|+..+|||-|+..+-+.++......+.+-.+....++..            .    ..--+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            4568999999999999999998877655544444444433333332            0    11136789999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc------cC-------C------
Q 027894           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC------AV-------S------  137 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------~~-------~------  137 (217)
                      .+.......||.+|+|+|+...---+.++. ++.+   +.++.|+||++||+|.....      .+       .      
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqtiES-i~lL---R~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E  630 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTIES-INLL---RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE  630 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchhHH-HHHH---HhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence            999999999999999999986422222222 1222   23789999999999973110      00       0      


Q ss_pred             -----HHHHHHHHHH-cC-------------CcEEEeccCCCCCHHHHHHHHHHHHHHHhhcc
Q 027894          138 -----TEDAKAFAER-EN-------------TFFMETSALESMNVENAFTEVLTQIYHVVSRK  181 (217)
Q Consensus       138 -----~~~~~~~~~~-~~-------------~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~  181 (217)
                           ..-+.+|+.+ ++             +.++++||.+|+|+.+++-+|+++....+..+
T Consensus       631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence                 0111222221 11             34799999999999999999999998887755

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.43  E-value=1.1e-12  Score=89.42  Aligned_cols=114  Identities=32%  Similarity=0.348  Sum_probs=81.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998777754443 3322                           222334456778999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      ++..+..+++.+  |...+......+.|.++++||.|+.++.....++..        .++++|++++.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999998765  666665555567889999999998543333333332        34667889988874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.42  E-value=6.6e-12  Score=109.25  Aligned_cols=117  Identities=21%  Similarity=0.216  Sum_probs=78.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CcccceeEEEEEE--EECCeEEEEEEEeCCCc
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KSTIGVEFATRSI--RVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~~l~Dt~G~   72 (217)
                      +..-+|+++|+.++|||||+.+|+...-....                ....++......+  .+.+....+.++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            44568999999999999999999763211100                0011121122222  23445678999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      ..|.......++.+|++++|+|+......+....|.....    .+.|.|+++||+|..
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~----~~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR----ERVKPVLFINKVDRL  152 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence            8888888888999999999999987644333333333222    346779999999975

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.42  E-value=8.3e-13  Score=100.41  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=78.3

Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc
Q 027894           73 ERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF  151 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  151 (217)
                      +++..+.+.+++++|++++|+|+.++. ++..+..|+..+..   .++|+++|+||+|+.+......+....+ ...+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            567777788999999999999999888 89999999987754   5799999999999965444333444444 457889


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q 027894          152 FMETSALESMNVENAFTEVLT  172 (217)
Q Consensus       152 ~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      ++++||+++.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999988753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.41  E-value=2.4e-12  Score=113.26  Aligned_cols=118  Identities=20%  Similarity=0.189  Sum_probs=82.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCcccceeEEEEEEEEC--------------C
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKSTIGVEFATRSIRVE--------------D   59 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~   59 (217)
                      .+...+|+++|+.++|||||+.+|+...-...                .....++......+.+.              .
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            45567999999999999999999976431100                00111222222222221              2


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      ....+.++||||+..|.......++.+|++++|+|+..+-.......|.....    .++|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH----CCCCEEEEEECCccc
Confidence            35778999999999998888888999999999999988755444444433332    578999999999985

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.40  E-value=1.1e-11  Score=95.81  Aligned_cols=141  Identities=17%  Similarity=0.244  Sum_probs=76.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------CcccceeEEEEEEEECCeEEEEEEEeCCCch--------
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLES----------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQE--------   73 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------   73 (217)
                      ..++|+|+|.+|+|||||||.|++.......          ..+..+......+.-++..+.+.++||||..        
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999987543331          1233344444455557788899999999911        


Q ss_pred             ----------hhhhhh---------HhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894           74 ----------RYRAIT---------SAYYRGAVGALLVYDVTRHVT-FENVERWLKELRGHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        74 ----------~~~~~~---------~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  133 (217)
                                .|....         ...-..+|+++|+++++...- -.++ ..+..+.    ..+++|.|+.|+|.-..
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCH
Confidence                      111100         001134689999999875431 1122 3445554    56889999999996321


Q ss_pred             ccC--CHHHHHHHHHHcCCcEEEecc
Q 027894          134 CAV--STEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       134 ~~~--~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      .+.  ....+.......++.+|....
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~~  183 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFPE  183 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S-----
T ss_pred             HHHHHHHHHHHHHHHHcCceeecccc
Confidence            111  122233444557777665443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01882 BMS1 Bms1

Probab=99.40  E-value=4.2e-11  Score=90.12  Aligned_cols=140  Identities=18%  Similarity=0.128  Sum_probs=83.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ......|+++|.+|+|||||++.+.+..-........+.    ..+ ......++.++||||.-  . ......+.+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--N-AMIDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--H-HHHHHHHhcCEE
Confidence            345578999999999999999999875221111111111    111 11234678999999864  2 223346889999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcE-EEEEeCCCCCCcccCC---HHHHHH-HHHH--cCCcEEEeccCCCC
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVI-MLVGNKADLRHLCAVS---TEDAKA-FAER--ENTFFMETSALESM  161 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~  161 (217)
                      ++++|++....... ..++..+..   .+.|. ++|+||+|+.+.....   ..+++. +...  .+.+++.+||+++-
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            99999986544322 233334432   34664 4599999986322111   112222 2221  34679999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.39  E-value=2.7e-11  Score=95.95  Aligned_cols=83  Identities=20%  Similarity=0.169  Sum_probs=57.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeE---------------EEEEEEeCCCchh----
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI---------------VKAQIWDTAGQER----   74 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~----   74 (217)
                      ++|+++|.||+|||||+|+|++........+..+.+...-.+.+.+..               .++.++|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999987544333444445544444444321               2589999999321    


Q ss_pred             ---hhhhhHhhhcCCcEEEEEEeCC
Q 027894           75 ---YRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        75 ---~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                         ........++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1112223467899999999984

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.39  E-value=1.4e-11  Score=97.77  Aligned_cols=144  Identities=17%  Similarity=0.139  Sum_probs=89.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCcc---cceeEEE-----EEEE-ECCeEEEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKST---IGVEFAT-----RSIR-VEDKIVKAQ   65 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------------~~~~---~~~~~~~-----~~~~-~~~~~~~~~   65 (217)
                      ...+.|+|+|+.++|||||||+|.+..+.|.                +.+.   .+++...     ..+. .++...++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            3568999999999999999999999822221                1111   1122211     1222 245557899


Q ss_pred             EEeCCCch--------hhhh---------------------hhHhhhc-CCcEEEEEE-eCC----ChhhHH-HHHHHHH
Q 027894           66 IWDTAGQE--------RYRA---------------------ITSAYYR-GAVGALLVY-DVT----RHVTFE-NVERWLK  109 (217)
Q Consensus        66 l~Dt~G~~--------~~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~s~~-~~~~~~~  109 (217)
                      ++||+|-.        +...                     -+...+. ++|..++|. |.+    .++.+. .-+.++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999910        0011                     0223344 789888888 664    112233 3355677


Q ss_pred             HHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894          110 ELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE  159 (217)
Q Consensus       110 ~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      .+..   .++|+++++|+.|...  ....+...++..+++++++.+|+..
T Consensus       175 eLk~---~~kPfiivlN~~dp~~--~et~~l~~~l~eky~vpvl~v~c~~  219 (492)
T TIGR02836       175 ELKE---LNKPFIILLNSTHPYH--PETEALRQELEEKYDVPVLAMDVES  219 (492)
T ss_pred             HHHh---cCCCEEEEEECcCCCC--chhHHHHHHHHHHhCCceEEEEHHH
Confidence            7765   6799999999999432  1244445566677888888888764

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PTZ00416 elongation factor 2; Provisional

Probab=99.39  E-value=3.5e-12  Score=112.09  Aligned_cols=118  Identities=20%  Similarity=0.204  Sum_probs=80.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCcccceeEEEEEEEEC--------CeEEEEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKSTIGVEFATRSIRVE--------DKIVKAQ   65 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~   65 (217)
                      .+...+|+++|+.++|||||+++|+...-...                .....++......+.+.        +....+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            34456999999999999999999987321100                00111112112222232        1256789


Q ss_pred             EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      ++||||+..|.......++.+|++++|+|+.+.-..+...-| ..+..   .+.|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence            999999998888888889999999999999886544433333 33332   468999999999985

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.39  E-value=7.3e-12  Score=98.48  Aligned_cols=107  Identities=13%  Similarity=0.081  Sum_probs=68.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STE  139 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~  139 (217)
                      +.+.++||+|...-...   ....+|.++++.+...++.++.+..   .+..     ..-++|+||+|+......  ...
T Consensus       149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHHH
Confidence            67899999996522221   4567999999977555554443322   1211     223899999998642211  112


Q ss_pred             HHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 027894          140 DAKAFAER-------ENTFFMETSALESMNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       140 ~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~  179 (217)
                      +.......       +..+++.+||+++.|++++++.|.+++....+
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~  264 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA  264 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            22222221       22579999999999999999999998764443

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=7.8e-12  Score=94.29  Aligned_cols=168  Identities=15%  Similarity=0.105  Sum_probs=110.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcC----------CC----CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEF----------SL----ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER   74 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      ..-+.++|..+|+...|||||..++..-..          ..    ......+++....++.+......+-.+|+||+..
T Consensus         8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD   87 (394)
T COG0050           8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence            344569999999999999999888754211          00    0113346677777777776667889999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC---CHHHHHHHHHHcCC
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV---STEDAKAFAERENT  150 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~  150 (217)
                      |-.+...-..+.|+.|+|++++|..--+..    ..+.-.+.-+.| +++++||+|+.++.+.   -..+.+++...+++
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGpmPqTr----EHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f  163 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGPMPQTR----EHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCCCCcch----hhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence            998888888999999999999985532222    222222224565 5567899999764332   34667788888875


Q ss_pred             c-----EEEeccCC-CCCHHHHHHHHHHHHHHHhhcc
Q 027894          151 F-----FMETSALE-SMNVENAFTEVLTQIYHVVSRK  181 (217)
Q Consensus       151 ~-----~~~~Sa~~-~~~v~~~~~~i~~~~~~~~~~~  181 (217)
                      +     ++.-||+. .+|-.. +..-+..+.+.....
T Consensus       164 ~gd~~Pii~gSal~ale~~~~-~~~~i~eLm~avd~y  199 (394)
T COG0050         164 PGDDTPIIRGSALKALEGDAK-WEAKIEELMDAVDSY  199 (394)
T ss_pred             CCCCcceeechhhhhhcCCcc-hHHHHHHHHHHHHhc
Confidence            4     77777665 333222 333334444444333

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.37  E-value=6.7e-12  Score=93.34  Aligned_cols=153  Identities=15%  Similarity=0.088  Sum_probs=83.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-----------Cccc---ceeEEEEEEEE------------------
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-----------KSTI---GVEFATRSIRV------------------   57 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-----------~~~~---~~~~~~~~~~~------------------   57 (217)
                      ......|+++|+.|+|||||+++++........           ..+.   ........+..                  
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~   98 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL   98 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence            345788999999999999999998764211000           0000   00000000000                  


Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC
Q 027894           58 EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS  137 (217)
Q Consensus        58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~  137 (217)
                      ......+.+++|.|.-...   ..+....+..+.|+|+.+.+..  .... ...     ...|.++++||+|+.......
T Consensus        99 ~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~  167 (207)
T TIGR00073        99 PLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKY-PGM-----FKEADLIVINKADLAEAVGFD  167 (207)
T ss_pred             ccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhh-HhH-----HhhCCEEEEEHHHccccchhh
Confidence            0012355667776621000   0111123444567776654321  1111 111     235679999999996532222


Q ss_pred             HHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHH
Q 027894          138 TEDAKAFAERE--NTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       138 ~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      ..+..+.....  ..+++++||+++.|++++|+++.++
T Consensus       168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            33444444443  3889999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.36  E-value=9.3e-12  Score=89.50  Aligned_cols=63  Identities=25%  Similarity=0.254  Sum_probs=45.7

Q ss_pred             EEEEEeCCCch----hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCC
Q 027894           63 KAQIWDTAGQE----RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA  128 (217)
Q Consensus        63 ~~~l~Dt~G~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~  128 (217)
                      .+.|+||||..    .....+..+++.+|++++|.++....+-.+...+.......   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            47899999953    23466778889999999999999876655666665555543   34488889984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.36  E-value=9e-12  Score=93.11  Aligned_cols=118  Identities=16%  Similarity=0.113  Sum_probs=69.7

Q ss_pred             EEEEEEeCCCchh-h------hhhhHhhh-cCCcEEEEEEeCCChhhHH-HHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           62 VKAQIWDTAGQER-Y------RAITSAYY-RGAVGALLVYDVTRHVTFE-NVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        62 ~~~~l~Dt~G~~~-~------~~~~~~~~-~~~d~ii~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      ++..++|||||.+ |      .-+...+. ...-++++++|.....+-. .+..++-........+.|+|++.||+|+.+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d  195 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD  195 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence            4688999999742 1      11122222 2345678888876533222 233333333333336799999999999964


Q ss_pred             cc----cCCH-HHHHHHHHH---------------------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 027894          133 LC----AVST-EDAKAFAER---------------------ENTFFMETSALESMNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       133 ~~----~~~~-~~~~~~~~~---------------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~  179 (217)
                      ..    ++.. +..++....                     .++..+-+|+.+|.|++++|..+-+.+.+...
T Consensus       196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~  268 (366)
T KOG1532|consen  196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE  268 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence            21    1111 111111110                     23557999999999999999999887766544

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.36  E-value=1.4e-12  Score=98.52  Aligned_cols=112  Identities=16%  Similarity=0.081  Sum_probs=58.2

Q ss_pred             EEEEEeCCCchhhhhhhHhhh--------cCCcEEEEEEeCCChhh-HHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894           63 KAQIWDTAGQERYRAITSAYY--------RGAVGALLVYDVTRHVT-FENVERWLKELRGHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  133 (217)
                      .+.++|||||.++...+....        ...-++++++|.....+ ...+..++..+.....-+.|.|.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            689999999987755554443        34557888999764332 122233332222222257999999999999652


Q ss_pred             c--c-----CC------------HHHHHHHHH---HcC-C-cEEEeccCCCCCHHHHHHHHHHHH
Q 027894          134 C--A-----VS------------TEDAKAFAE---REN-T-FFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       134 ~--~-----~~------------~~~~~~~~~---~~~-~-~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      .  .     ..            .....+++.   ..+ . .++++|+.+++++.+++..|-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            1  0     00            000111111   122 3 699999999999999998876654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.35  E-value=7.8e-11  Score=92.29  Aligned_cols=131  Identities=16%  Similarity=0.230  Sum_probs=90.2

Q ss_pred             eeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhH-------HHHH---HHHHHHhccCC-
Q 027894           48 VEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTF-------ENVE---RWLKELRGHTD-  116 (217)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-------~~~~---~~~~~l~~~~~-  116 (217)
                      .......+.+.+  ..+.++|++||...+.-|.+++.+++++|||+++++-+..       ..+.   .++..+-.... 
T Consensus       183 ~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F  260 (354)
T KOG0082|consen  183 TGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF  260 (354)
T ss_pred             CCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence            334444444444  7789999999999999999999999999999999864321       1222   23333333333 


Q ss_pred             CCCcEEEEEeCCCCCCcc---------------cCCHHHHHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHH
Q 027894          117 SNIVIMLVGNKADLRHLC---------------AVSTEDAKAFAER----------ENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus       117 ~~~p~iiv~nK~D~~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      .+.++|+++||.|+-.+.               ....+++..+...          ..+.+..+.|.+-.+++.+|..+.
T Consensus       261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~  340 (354)
T KOG0082|consen  261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT  340 (354)
T ss_pred             ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence            679999999999983211               1233444444322          234567788999999999999999


Q ss_pred             HHHHHHhhc
Q 027894          172 TQIYHVVSR  180 (217)
Q Consensus       172 ~~~~~~~~~  180 (217)
                      +.++...-+
T Consensus       341 d~Ii~~nlk  349 (354)
T KOG0082|consen  341 DTIIQNNLK  349 (354)
T ss_pred             HHHHHHHHH
Confidence            988876543

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.35  E-value=5e-11  Score=88.12  Aligned_cols=159  Identities=25%  Similarity=0.213  Sum_probs=110.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh-------hhhhHhhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY-------RAITSAYY   83 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~   83 (217)
                      ....||+++|.|++|||||+..+....-........+.+...-.+.+++  ..+++.|.||.-.-       .....+..
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavA  137 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVA  137 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEe
Confidence            3468999999999999999999988665444445555666666677777  45799999993211       22334566


Q ss_pred             cCCcEEEEEEeCCChhhHH-HHHHHHHHHhcc------------------------------------------------
Q 027894           84 RGAVGALLVYDVTRHVTFE-NVERWLKELRGH------------------------------------------------  114 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~-~~~~~~~~l~~~------------------------------------------------  114 (217)
                      +.+|.+++|.|++..+.-. -++..+..+...                                                
T Consensus       138 rtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naev  217 (364)
T KOG1486|consen  138 RTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEV  217 (364)
T ss_pred             ecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceE
Confidence            8899999999998644322 122222221110                                                


Q ss_pred             -----------------CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894          115 -----------------TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       115 -----------------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                                       ....++++.|-||+|     +++.++..+++.+.+-.  .+|+.-+.|++.+++.|.+.+.-.
T Consensus       218 l~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pnsv--ViSC~m~lnld~lle~iWe~l~L~  290 (364)
T KOG1486|consen  218 LFREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNSV--VISCNMKLNLDRLLERIWEELNLV  290 (364)
T ss_pred             EEecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCcE--EEEeccccCHHHHHHHHHHHhceE
Confidence                             002367888899998     57888888888876654  458888999999999998877544


Q ss_pred             h
Q 027894          178 V  178 (217)
Q Consensus       178 ~  178 (217)
                      +
T Consensus       291 r  291 (364)
T KOG1486|consen  291 R  291 (364)
T ss_pred             E
Confidence            3

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.31  E-value=1.8e-11  Score=97.07  Aligned_cols=162  Identities=12%  Similarity=0.139  Sum_probs=79.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcc--cceeEEEEEEEECCeEEEEEEEeCCCchhhhhhh-----Hhhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKST--IGVEFATRSIRVEDKIVKAQIWDTAGQERYRAIT-----SAYY   83 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----~~~~   83 (217)
                      ..++|+|+|.+|+|||||||+|-+-.... ...++  ..++.....+... ..-.+.+||.||........     ..-+
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            46899999999999999999997632211 11111  1111112222111 11248999999943222112     2235


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC--C-----cccCCH----HHHHHHHH----Hc
Q 027894           84 RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR--H-----LCAVST----EDAKAFAE----RE  148 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~--~-----~~~~~~----~~~~~~~~----~~  148 (217)
                      ...|.+|++.+-  +-+-.++ .+...+..   .++|+.+|-+|+|..  +     .+....    +++++.+.    +.
T Consensus       113 ~~yD~fiii~s~--rf~~ndv-~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  113 YRYDFFIIISSE--RFTENDV-QLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             GG-SEEEEEESS--S--HHHH-HHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             cccCEEEEEeCC--CCchhhH-HHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            668877776653  2221222 22233433   568999999999961  1     112222    22233322    23


Q ss_pred             CC---cEEEeccCC--CCCHHHHHHHHHHHHHHHhhc
Q 027894          149 NT---FFMETSALE--SMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       149 ~~---~~~~~Sa~~--~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      ++   ++|-+|+.+  ..++..+.+.+...+..++..
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence            33   488899887  456888888888877776654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.30  E-value=2.9e-11  Score=86.40  Aligned_cols=54  Identities=19%  Similarity=0.070  Sum_probs=43.8

Q ss_pred             EEEEEeCCCCCCcccCCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          121 IMLVGNKADLRHLCAVSTEDAKAFAERE--NTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       121 ~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      -++|+||.|+.+.-..+.+...+-+++.  +.+++++|+++|+|+++++.|+....
T Consensus       145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            4789999999876666667777666664  58899999999999999999887653

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=4.8e-11  Score=97.51  Aligned_cols=156  Identities=19%  Similarity=0.199  Sum_probs=100.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-----------------------------CCcccceeEEEEEEEECC
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------------------------SKSTIGVEFATRSIRVED   59 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   59 (217)
                      .....+..+++|+..+|||||+.+++...-...                             .....|++..+....++.
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            344689999999999999999999865311110                             011123444444444455


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFE---NVERWLKELRGHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  133 (217)
                      ....++++|+||+..|-.....-...+|+.++|+|++...   .|+   .... +..+.+.. .-..++|++||+|..+=
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L-gi~qlivaiNKmD~V~W  330 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL-GISQLIVAINKMDLVSW  330 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc-CcceEEEEeecccccCc
Confidence            5578999999999889888888889999999999987532   111   1111 22222222 23558889999998641


Q ss_pred             c----cCCHHHHHHHH-HHcC-----CcEEEeccCCCCCHHHH
Q 027894          134 C----AVSTEDAKAFA-EREN-----TFFMETSALESMNVENA  166 (217)
Q Consensus       134 ~----~~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~v~~~  166 (217)
                      .    +.....+..|. +..|     +.|+++|+..|+|+-..
T Consensus       331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            1    12223344555 3334     46999999999986544

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.28  E-value=4.7e-11  Score=93.61  Aligned_cols=104  Identities=17%  Similarity=0.053  Sum_probs=65.2

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH--
Q 027894           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST--  138 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--  138 (217)
                      .+++.|+||+|.....   ......+|.++++...   .+.+++..+...+     .++|.++|+||+|+........  
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            3678999999954221   2345668888877543   3334444444434     3467799999999864321110  


Q ss_pred             H----HHHHHHH---HcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          139 E----DAKAFAE---RENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       139 ~----~~~~~~~---~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      .    ....+..   .+..+++++||+++.|+++++++|.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            0    0011111   12346999999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.28  E-value=9.4e-11  Score=91.26  Aligned_cols=139  Identities=17%  Similarity=0.227  Sum_probs=85.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------CCcccceeEEEEEEEECCeEEEEEEEeCCCchh------
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER------   74 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------   74 (217)
                      -..+.|+++|++|+|||||+|.|++......          ..++..+..+...+.-++..+.+.++||||...      
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            3568999999999999999999998743322          123444445555555577778899999999211      


Q ss_pred             -h-------hhhhHhhh--------------cCCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           75 -Y-------RAITSAYY--------------RGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        75 -~-------~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                       |       ......|+              ..+|+++|++.++... +..+ -..+..+.    ..+.+|.|+.|+|.-
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLS----KRVNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence             0       11111111              2368888888866433 2222 22344444    557799999999974


Q ss_pred             Cccc--CCHHHHHHHHHHcCCcEEE
Q 027894          132 HLCA--VSTEDAKAFAERENTFFME  154 (217)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~~~~~  154 (217)
                      ...+  ...+.+.+....+++++|.
T Consensus       176 T~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         176 TDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCceeC
Confidence            3221  1223344555667888774

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.28  E-value=7.1e-12  Score=91.33  Aligned_cols=146  Identities=21%  Similarity=0.297  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-----hhhHhhhcCCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-----AITSAYYRGAV   87 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~d   87 (217)
                      -||+++|.+|+||||+=..+..+... .....+.++++...++.+-|. +.+.+||++|++.+-     ......+++.+
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            48999999999999975544432211 122244445666655555443 568999999998542     23456789999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHH---HHhccCCCCCcEEEEEeCCCCCCcc--cCC----HHHHHHHHHHcCCcEEEeccC
Q 027894           88 GALLVYDVTRHVTFENVERWLK---ELRGHTDSNIVIMLVGNKADLRHLC--AVS----TEDAKAFAERENTFFMETSAL  158 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~---~l~~~~~~~~p~iiv~nK~D~~~~~--~~~----~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                      ++++|||++..+-..++..+-.   .+.+.. ++..+++...|+|+....  +..    .+....+....++.++++|.+
T Consensus        84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw  162 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW  162 (295)
T ss_pred             eeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence            9999999988765555544433   343333 677788899999996422  111    122233333455678888888


Q ss_pred             CCC
Q 027894          159 ESM  161 (217)
Q Consensus       159 ~~~  161 (217)
                      +..
T Consensus       163 Det  165 (295)
T KOG3886|consen  163 DET  165 (295)
T ss_pred             hHH
Confidence            654

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.26  E-value=1.6e-11  Score=93.76  Aligned_cols=164  Identities=18%  Similarity=0.113  Sum_probs=111.2

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc---------hhhhhh
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------ERYRAI   78 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~   78 (217)
                      .......-|.+||.+|+||||||++|+.....+...-..+.+........... -.+.+.||-|.         ..|...
T Consensus       173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~AT  251 (410)
T KOG0410|consen  173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQAT  251 (410)
T ss_pred             cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHH
Confidence            34556678999999999999999999987776655555555555555544333 24688899993         233333


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc----EEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEE
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV----IMLVGNKADLRHLCAVSTEDAKAFAERENTFFME  154 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p----~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  154 (217)
                      .. -...+|.++.|.|++.|..-+..+..+..+....-+..|    ++=|-||+|........ +       .++  -+.
T Consensus       252 Le-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-E-------~n~--~v~  320 (410)
T KOG0410|consen  252 LE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-E-------KNL--DVG  320 (410)
T ss_pred             HH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-c-------cCC--ccc
Confidence            33 346799999999999998666566666555554433333    34478888875422111 1       122  577


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHHhhcccc
Q 027894          155 TSALESMNVENAFTEVLTQIYHVVSRKAL  183 (217)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~  183 (217)
                      +||++|+|.+++...+-..+.......+.
T Consensus       321 isaltgdgl~el~~a~~~kv~~~t~~~e~  349 (410)
T KOG0410|consen  321 ISALTGDGLEELLKAEETKVASETTVDED  349 (410)
T ss_pred             cccccCccHHHHHHHHHHHhhhhheeeeE
Confidence            89999999999999888887766654433

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.24  E-value=2.9e-10  Score=95.24  Aligned_cols=122  Identities=16%  Similarity=0.132  Sum_probs=74.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchhh----------hh
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQERY----------RA   77 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~   77 (217)
                      +-+..++|+++|.+|+||||++|.|++........ ...+..........++  ..+.++||||....          ..
T Consensus       114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk  191 (763)
T TIGR00993       114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS  191 (763)
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence            34567899999999999999999999986433322 1222222222233344  56899999994321          11


Q ss_pred             hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCC--CcEEEEEeCCCCCC
Q 027894           78 ITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRGHTDSN--IVIMLVGNKADLRH  132 (217)
Q Consensus        78 ~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~iiv~nK~D~~~  132 (217)
                      ....++.  .+|++|+|..++.......-..++..+....+.+  ..+|||+|+.|...
T Consensus       192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            1222333  5899999998764333212224455555444322  45788999999864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=3.2e-10  Score=96.93  Aligned_cols=118  Identities=17%  Similarity=0.198  Sum_probs=87.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CcccceeEEEEEEEECCe-EEEEEEEeCCCc
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KSTIGVEFATRSIRVEDK-IVKAQIWDTAGQ   72 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~   72 (217)
                      ....-+|.++|+..+|||||..+++-..-....                ...-+++........... ..+++++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            556789999999999999999998653211110                011134444444444444 488999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      -.|..-....++-+|++++|+|+...-..+.-..|.+...    .++|.++++||+|..
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~  141 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRL  141 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccc
Confidence            9999888889999999999999988765554555655544    679999999999985

>smart00053 DYNc Dynamin, GTPase

Probab=99.22  E-value=3e-10  Score=85.62  Aligned_cols=118  Identities=17%  Similarity=0.224  Sum_probs=69.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccce-----------eEEEE---------------------------
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV-----------EFATR---------------------------   53 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~-----------~~~~~---------------------------   53 (217)
                      ....|+++|++|+||||+++.+.+..+.+......+.           ..+..                           
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~  104 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT  104 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4568999999999999999999987532211100000           00000                           


Q ss_pred             -----------EEEEC-CeEEEEEEEeCCCch-------------hhhhhhHhhhc-CCcEEEEEEeCCChhhHHHHHHH
Q 027894           54 -----------SIRVE-DKIVKAQIWDTAGQE-------------RYRAITSAYYR-GAVGALLVYDVTRHVTFENVERW  107 (217)
Q Consensus        54 -----------~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~  107 (217)
                                 .+.+. .....+.++||||-.             ....+...|++ ..+.+++|+|+...-.-.+...+
T Consensus       105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i  184 (240)
T smart00053      105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL  184 (240)
T ss_pred             CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence                       01110 111478899999942             12334556677 45688999988653222222233


Q ss_pred             HHHHhccCCCCCcEEEEEeCCCCCC
Q 027894          108 LKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus       108 ~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      ...+..   .+.++++|+||.|..+
T Consensus       185 a~~ld~---~~~rti~ViTK~D~~~  206 (240)
T smart00053      185 AKEVDP---QGERTIGVITKLDLMD  206 (240)
T ss_pred             HHHHHH---cCCcEEEEEECCCCCC
Confidence            333332   5688999999999864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=3.6e-10  Score=88.68  Aligned_cols=144  Identities=19%  Similarity=0.269  Sum_probs=87.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCC---------CCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------h
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE---------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------Y   75 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~   75 (217)
                      ..+.++++|.+|.|||||||.|+...+...         ...+..+......+.-++..++++++||||...       |
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            468999999999999999999988754432         122334444444444467778999999999110       0


Q ss_pred             -------hhhhHhh-----------hc--CCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894           76 -------RAITSAY-----------YR--GAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        76 -------~~~~~~~-----------~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                             .+....|           +.  .+|+++|++.++... +..+ ..++..+.    ..+.+|.|+.|+|.....
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD  174 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence                   1111111           22  578888888876542 2222 22334443    567799999999974322


Q ss_pred             cC--CHHHHHHHHHHcCCcEEEeccCCC
Q 027894          135 AV--STEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus       135 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      +.  ....+.+.+...++++|....-..
T Consensus       175 El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  175 ELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            22  123344455667788776665443

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.21  E-value=1.4e-10  Score=85.16  Aligned_cols=155  Identities=17%  Similarity=0.223  Sum_probs=88.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---------CCcccceeEEEEEEEECCeEEEEEEEeCCCc---------
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE---------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------   72 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------   72 (217)
                      -+.++|+|||.+|.|||||+|.+........         ...|..+......+.-++..++++++||||.         
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            3578999999999999999999877544321         1122233333334444666778899999991         


Q ss_pred             ---------hhhh--------hhhHhhhc--CCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCC-
Q 027894           73 ---------ERYR--------AITSAYYR--GAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-  131 (217)
Q Consensus        73 ---------~~~~--------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~-  131 (217)
                               +.|.        ......+.  .+++++|.+-.+- .++.-+ ..++..+.    .-+.++.|+.|.|-. 
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt----~vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT----EVVNVVPVIAKADTLT  198 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh----hhheeeeeEeeccccc
Confidence                     1111        11111122  2466677666553 233322 12333333    335588899999963 


Q ss_pred             -CcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894          132 -HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus       132 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                       +++..-.+.+++-...+++.+|+-.+.+...-+..++.-
T Consensus       199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~k  238 (336)
T KOG1547|consen  199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDK  238 (336)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHH
Confidence             222222334444455688888877776655444444433

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=3.1e-10  Score=90.30  Aligned_cols=155  Identities=21%  Similarity=0.130  Sum_probs=108.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCC---CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFS---LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      -|+..|+--.|||||++.+.+..-.   .......+++........++.  .+.++|.||++++-+.....+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            4788999999999999999886432   233344455555555555443  78999999999998888888889999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH---HcCCcEEEeccCCCCCHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE---RENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      |++.++.-..+..+.+ ..+...  .....++|+||+|..++.. ..+..++...   ..+.+++.+|+.+++|++++.+
T Consensus        80 vV~~deGl~~qtgEhL-~iLdll--gi~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQTGEHL-LILDLL--GIKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchhhHHHH-HHHHhc--CCCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            9999765444433332 111111  2344689999999875321 1122222222   3457789999999999999999


Q ss_pred             HHHHHHH
Q 027894          169 EVLTQIY  175 (217)
Q Consensus       169 ~i~~~~~  175 (217)
                      .|.+...
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9999884

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.18  E-value=5.9e-10  Score=84.72  Aligned_cols=161  Identities=19%  Similarity=0.108  Sum_probs=97.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc-----------CCCCCCcccc---------------eeEEEEEEEEC-------
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNE-----------FSLESKSTIG---------------VEFATRSIRVE-------   58 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~-----------~~~~~~~~~~---------------~~~~~~~~~~~-------   58 (217)
                      ....|.+.|.||+|||||+..|...-           ..|++..|-|               ...+...+...       
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            35689999999999999999886531           1222211111               11111111111       


Q ss_pred             -----------CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeC
Q 027894           59 -----------DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK  127 (217)
Q Consensus        59 -----------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK  127 (217)
                                 ...+++++++|.|--+-...   ...-+|.+++|.=..-.+.++.++.-+..+.        -++|+||
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINK  198 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINK  198 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEec
Confidence                       12257899999884332222   3445898999888777777666655333332        3889999


Q ss_pred             CCCCCcccCCHHHHH--HHH----H--HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHhhcccc
Q 027894          128 ADLRHLCAVSTEDAK--AFA----E--RENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL  183 (217)
Q Consensus       128 ~D~~~~~~~~~~~~~--~~~----~--~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~  183 (217)
                      .|.........+...  .+.    .  .+..+++.+||..++|++++++.|.++.......+..
T Consensus       199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~  262 (323)
T COG1703         199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLF  262 (323)
T ss_pred             cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcccc
Confidence            996432111111111  111    1  1335699999999999999999999988777665543

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.17  E-value=6.2e-11  Score=88.74  Aligned_cols=157  Identities=18%  Similarity=0.125  Sum_probs=90.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcC-----------CCCCCcc---------------cceeEEEEEEEECC------
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEF-----------SLESKST---------------IGVEFATRSIRVED------   59 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~------   59 (217)
                      ..+.|.+.|+||+|||||+..|...-.           .|++..+               .....+...+..-+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            457999999999999999998855211           1111110               01122233222211      


Q ss_pred             ------------eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeC
Q 027894           60 ------------KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK  127 (217)
Q Consensus        60 ------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK  127 (217)
                                  ..+.+++++|.|--+-..   ....-+|.+++|.-+.-.+..+.++.-+.++.        -++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEeC
Confidence                        125788999987322211   23456999999999988777665554333332        3889999


Q ss_pred             CCCCCcccCCHHHHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894          128 ADLRHLCAVSTEDAKAFAER-------ENTFFMETSALESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       128 ~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      .|...... ...+.......       +..|++.+||.++.|++++++.|.++.......
T Consensus       177 aD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s  235 (266)
T PF03308_consen  177 ADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKES  235 (266)
T ss_dssp             -SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            99643221 11222222221       235799999999999999999998876655543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=9.8e-10  Score=85.59  Aligned_cols=124  Identities=18%  Similarity=0.258  Sum_probs=87.4

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeE-----------------------
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKI-----------------------   61 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------------   61 (217)
                      .+.+++....|+++|+-+.||||||+.|+.+.++.... +..++++....+.-+...                       
T Consensus        51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~  130 (532)
T KOG1954|consen   51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN  130 (532)
T ss_pred             cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence            46678889999999999999999999999999876432 223333333333221100                       


Q ss_pred             ----------------EEEEEEeCCCc---------h--hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhcc
Q 027894           62 ----------------VKAQIWDTAGQ---------E--RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGH  114 (217)
Q Consensus        62 ----------------~~~~l~Dt~G~---------~--~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~  114 (217)
                                      -.+.++||||.         .  .|......+...+|.+|++||+..-+--++.+..+..+.. 
T Consensus       131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-  209 (532)
T KOG1954|consen  131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-  209 (532)
T ss_pred             HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-
Confidence                            16889999992         1  2445567788999999999998876655556666666654 


Q ss_pred             CCCCCcEEEEEeCCCCCC
Q 027894          115 TDSNIVIMLVGNKADLRH  132 (217)
Q Consensus       115 ~~~~~p~iiv~nK~D~~~  132 (217)
                        .+-.+-||+||.|..+
T Consensus       210 --~EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  210 --HEDKIRVVLNKADQVD  225 (532)
T ss_pred             --CcceeEEEeccccccC
Confidence              4455778899999754

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.15  E-value=3.5e-10  Score=91.90  Aligned_cols=167  Identities=19%  Similarity=0.325  Sum_probs=125.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .-+.+|+.|||..++|||+|+.+++.+.+.....+.- - ....++.+++....+.+.|.+|..     ...|...+|++
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~-~-~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav   99 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG-G-RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV   99 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCcC-c-cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence            4467999999999999999999999998876553332 2 334444466666777888888832     33356779999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCC--CcccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLR--HLCAVSTEDAKAFAER-ENTFFMETSALESMNVEN  165 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~  165 (217)
                      ||||.+.+..+|+.+..+...+..... ..+|.++++++.-..  ..+.+...+..+++.+ ..+.||++++.+|.++..
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            999999999999999888777765554 678888888876553  2334455555555544 568899999999999999


Q ss_pred             HHHHHHHHHHHHhhcccc
Q 027894          166 AFTEVLTQIYHVVSRKAL  183 (217)
Q Consensus       166 ~~~~i~~~~~~~~~~~~~  183 (217)
                      +|+.+.+.++..+.....
T Consensus       180 vf~~~~~k~i~~~~~qq~  197 (749)
T KOG0705|consen  180 VFQEVAQKIVQLRKYQQL  197 (749)
T ss_pred             HHHHHHHHHHHHHhhhhc
Confidence            999999999888655533

>cd01900 YchF YchF subfamily

Probab=99.13  E-value=4.8e-10  Score=86.16  Aligned_cols=81  Identities=19%  Similarity=0.155  Sum_probs=56.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeE---------------EEEEEEeCCCchh------
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI---------------VKAQIWDTAGQER------   74 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~------   74 (217)
                      |+++|.||||||||+|+|++........+..+.+.....+.+.+..               ..+.++|+||...      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5899999999999999999988755444555555555555554432               3589999999321      


Q ss_pred             -hhhhhHhhhcCCcEEEEEEeCC
Q 027894           75 -YRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        75 -~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                       ....-...++++|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1111223357899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.13  E-value=1.1e-10  Score=89.59  Aligned_cols=55  Identities=20%  Similarity=0.131  Sum_probs=39.1

Q ss_pred             CcEEEEEeCCCCCCcccCCHHHHHHHHHH--cCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894          119 IVIMLVGNKADLRHLCAVSTEDAKAFAER--ENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       119 ~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      ..-++|+||+|+........+...+..+.  ...+++++|+++++|++++++||.++
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            44589999999964222223333333333  35789999999999999999998763

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1e-09  Score=87.16  Aligned_cols=114  Identities=17%  Similarity=0.228  Sum_probs=80.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCC----------------C----CCcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSL----------------E----SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER   74 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~----------------~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      .-+|+-+|.+|||||-..|+--.-..                +    ....-|+...+..+.++.....+.+.||||++.
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD   93 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED   93 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence            45789999999999999875411000                0    001225666666666666668899999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      |...+-..+..+|.++.|+|+...-.-+.+ .++....   .+++|++-++||.|...
T Consensus        94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcr---lR~iPI~TFiNKlDR~~  147 (528)
T COG4108          94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCR---LRDIPIFTFINKLDREG  147 (528)
T ss_pred             cchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHh---hcCCceEEEeecccccc
Confidence            988888888899999999999865332222 2222222   27899999999999754

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=2.9e-09  Score=83.56  Aligned_cols=84  Identities=20%  Similarity=0.196  Sum_probs=58.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC----------------eEEEEEEEeCCCc----
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED----------------KIVKAQIWDTAGQ----   72 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~Dt~G~----   72 (217)
                      .+++.+||.||+|||||.|+++.........|..|++...-.+.+..                ....+.++|.+|.    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999999886544445555555554443321                2346889999982    


Q ss_pred             ---hhhhhhhHhhhcCCcEEEEEEeCC
Q 027894           73 ---ERYRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        73 ---~~~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                         +.....-..-++.+|+++.|+|..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence               111111223468899999999987

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.2e-09  Score=90.78  Aligned_cols=117  Identities=25%  Similarity=0.293  Sum_probs=83.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCccc---------------ceeEEEEEEE-----ECCeEEEEEEEeC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTI---------------GVEFATRSIR-----VEDKIVKAQIWDT   69 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~---------------~~~~~~~~~~-----~~~~~~~~~l~Dt   69 (217)
                      .+...+|+++|+-++|||+|+.-|..+..+.....+.               +........+     ..++.+-++++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            4557899999999999999999998876533211100               1222222111     1456678899999


Q ss_pred             CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCC
Q 027894           70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~  130 (217)
                      ||+-.|..-....++.+|++++|+|+.+.-.+..-.-....+.    .+.|+++|+||+|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence            9998888888888999999999999988766553332323332    57899999999997

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.09  E-value=4.7e-09  Score=85.41  Aligned_cols=125  Identities=17%  Similarity=0.191  Sum_probs=84.0

Q ss_pred             eeEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHhccCC
Q 027894           48 VEFATRSIRV-EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV----------TFENVERWLKELRGHTD  116 (217)
Q Consensus        48 ~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~l~~~~~  116 (217)
                      .......+.+ .+  ..+.++|++|+...+.-|..++.+++++|||+++++-+          .+.+.-.++..+.....
T Consensus       223 ~Gi~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~  300 (389)
T PF00503_consen  223 TGITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW  300 (389)
T ss_dssp             SSEEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred             CCeeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence            3344444444 44  67899999999999999999999999999999987522          13333334444443322


Q ss_pred             -CCCcEEEEEeCCCCCC------c----------c--cCCHHHHHHHHHH------------cCCcEEEeccCCCCCHHH
Q 027894          117 -SNIVIMLVGNKADLRH------L----------C--AVSTEDAKAFAER------------ENTFFMETSALESMNVEN  165 (217)
Q Consensus       117 -~~~p~iiv~nK~D~~~------~----------~--~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~  165 (217)
                       .+.|+||++||.|+-.      .          -  .-..+.+..+...            ..+.++.++|.+...+..
T Consensus       301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~  380 (389)
T PF00503_consen  301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK  380 (389)
T ss_dssp             GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred             cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence             6899999999999821      0          0  1234555555432            123467899999999999


Q ss_pred             HHHHHHHHH
Q 027894          166 AFTEVLTQI  174 (217)
Q Consensus       166 ~~~~i~~~~  174 (217)
                      +|+.+.+-+
T Consensus       381 v~~~v~~~i  389 (389)
T PF00503_consen  381 VFNAVKDII  389 (389)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhcCcC
Confidence            998887643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.6e-09  Score=79.83  Aligned_cols=167  Identities=16%  Similarity=0.176  Sum_probs=100.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh---hhhHhhhcCCcE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR---AITSAYYRGAVG   88 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~d~   88 (217)
                      ...+|+++|...+||||+-+.......+.....- ..+.....-.+.+..+.+.+||.|||-.+.   -.....++.+.+
T Consensus        26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlfl-ESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA  104 (347)
T KOG3887|consen   26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFL-ESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA  104 (347)
T ss_pred             CCceEEEEeecccCcchhhheeeeccCCCceeEe-eccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence            3477999999999999998877665543322110 000001111123355789999999975432   123557899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccC--CCCCcEEEEEeCCCCCCcc-cCC-H----HHHHHHHHH-----cCCcEEEe
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHT--DSNIVIMLVGNKADLRHLC-AVS-T----EDAKAFAER-----ENTFFMET  155 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~-~~~-~----~~~~~~~~~-----~~~~~~~~  155 (217)
                      +++|+|+.+.- .+.+.++...+.+..  ++++.+-+++.|.|...+. .+. .    ....+-...     ..+.|+-+
T Consensus       105 LifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT  183 (347)
T KOG3887|consen  105 LIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT  183 (347)
T ss_pred             EEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence            99999986642 233344433333322  2788889999999974321 111 0    111111111     22446666


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhhcc
Q 027894          156 SALESMNVENAFTEVLTQIYHVVSRK  181 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~~~~~~~~~  181 (217)
                      |..+ ..+-|.|..+++.++.+.+--
T Consensus       184 SIyD-HSIfEAFSkvVQkLipqLptL  208 (347)
T KOG3887|consen  184 SIYD-HSIFEAFSKVVQKLIPQLPTL  208 (347)
T ss_pred             eecc-hHHHHHHHHHHHHHhhhchhH
Confidence            6654 568999999999999887643

>cd01855 YqeH YqeH

Probab=99.04  E-value=2.6e-09  Score=78.41  Aligned_cols=95  Identities=19%  Similarity=0.091  Sum_probs=66.6

Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHc
Q 027894           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERE  148 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~  148 (217)
                      .+...+..+++.+|++++|+|++++..     .|...+.... .+.|+++|+||+|+... ....+....+.     ...
T Consensus        23 ~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~   95 (190)
T cd01855          23 FILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGL   95 (190)
T ss_pred             HHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhc
Confidence            357788889999999999999988642     1112221112 46899999999998642 23333344333     223


Q ss_pred             CC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          149 NT---FFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       149 ~~---~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      +.   .++++||++++|++++++.|.+.+.
T Consensus        96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          96 GLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            33   5899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=99.01  E-value=2e-09  Score=76.50  Aligned_cols=95  Identities=17%  Similarity=0.075  Sum_probs=65.9

Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEE
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFME  154 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  154 (217)
                      ++.+..+.++++|++++|+|+.++...... .+...+..   .+.|+++|+||+|+.+...  ......+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence            456677888899999999999876533221 22222221   4689999999999853211  11111333445678999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 027894          155 TSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      +||+++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999988765

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.94  E-value=4.9e-09  Score=83.52  Aligned_cols=92  Identities=16%  Similarity=0.134  Sum_probs=68.0

Q ss_pred             hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEe
Q 027894           77 AITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMET  155 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (217)
                      .+....+.++|.+++|+|+.++. +...+..|+..+..   .++|+++|+||+|+....+  ...........+++++.+
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            34455689999999999998876 44466777766643   5789999999999854211  122233344678899999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027894          156 SALESMNVENAFTEVLTQ  173 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~  173 (217)
                      ||+++.|++++++.+...
T Consensus       156 SA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        156 SVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EcCCCCCHHHHhhhhccc
Confidence            999999999999888653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.93  E-value=5.8e-09  Score=81.29  Aligned_cols=88  Identities=15%  Similarity=0.028  Sum_probs=68.2

Q ss_pred             HhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccC
Q 027894           80 SAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSAL  158 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                      ...+.++|.+++|+|+.++. ++..++.|+..+..   .++|+++|+||+|+.+..  .......+....+.+++.+||+
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence            33578999999999999987 88888888887764   468999999999996531  1122233344578899999999


Q ss_pred             CCCCHHHHHHHHHH
Q 027894          159 ESMNVENAFTEVLT  172 (217)
Q Consensus       159 ~~~~v~~~~~~i~~  172 (217)
                      ++.|+++++..+..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999887754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.92  E-value=2.6e-09  Score=76.90  Aligned_cols=57  Identities=25%  Similarity=0.396  Sum_probs=41.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      ...++|+++|.+|+|||||+|+|.+....... ...+++.....+..+.   .+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence            44589999999999999999999987653332 3334444445554443   478999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.91  E-value=3.5e-09  Score=73.92  Aligned_cols=54  Identities=24%  Similarity=0.290  Sum_probs=40.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      +++++|.+|+|||||+|++.+....... ...+.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999999988764332 2334445555555544   4799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.91  E-value=6.8e-09  Score=77.32  Aligned_cols=155  Identities=22%  Similarity=0.180  Sum_probs=94.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------YRAITSAYYRG   85 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   85 (217)
                      ..+|.++|.|++|||||+..+.+..-+.......+.....-.+.+.+  .++++.|.||..+       .........+.
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart  136 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART  136 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence            45899999999999999999988654333322222222222233333  5789999999421       12233455678


Q ss_pred             CcEEEEEEeCCChhhHHHH-----------------------------------------HHHHHHHhc-----------
Q 027894           86 AVGALLVYDVTRHVTFENV-----------------------------------------ERWLKELRG-----------  113 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~-----------------------------------------~~~~~~l~~-----------  113 (217)
                      |+.+++|.|+-.|-+-..+                                         ...+...+.           
T Consensus       137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da  216 (358)
T KOG1487|consen  137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA  216 (358)
T ss_pred             ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence            9999999998653221110                                         111111000           


Q ss_pred             --------cCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894          114 --------HTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       114 --------~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                              ...  ..+|++.++||+|..     +.++..-.   +.++ .+++||..+.|++++++.+.+++--.
T Consensus       217 T~DdLIdvVegnr~yVp~iyvLNkIdsI-----SiEELdii---~~iphavpISA~~~wn~d~lL~~mweyL~Lv  283 (358)
T KOG1487|consen  217 TADDLIDVVEGNRIYVPCIYVLNKIDSI-----SIEELDII---YTIPHAVPISAHTGWNFDKLLEKMWEYLKLV  283 (358)
T ss_pred             chhhhhhhhccCceeeeeeeeeccccee-----eeecccee---eeccceeecccccccchHHHHHHHhhcchhe
Confidence                    011  247889999999953     32322111   2333 68899999999999999998876543

>PRK00098 GTPase RsgA; Reviewed

Probab=98.88  E-value=9.9e-09  Score=80.43  Aligned_cols=86  Identities=19%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             hhcCCcEEEEEEeCCChhhHHH-HHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894           82 YYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      .+.++|++++|+|+.++.+... +..|+..+..   .++|+++|+||+|+.+... ............+++++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4589999999999988876544 4677766653   5689999999999853221 122334455667889999999999


Q ss_pred             CCHHHHHHHHH
Q 027894          161 MNVENAFTEVL  171 (217)
Q Consensus       161 ~~v~~~~~~i~  171 (217)
                      .|++++++.+.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999998763

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.87  E-value=8.1e-08  Score=75.50  Aligned_cols=154  Identities=17%  Similarity=0.132  Sum_probs=95.8

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC----------------cccceeEEEEEEEECCeE----------
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK----------------STIGVEFATRSIRVEDKI----------   61 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~----------   61 (217)
                      +..+..+.|.+.|+...|||||+-.|..+.......                .+..+.+...-+. +++.          
T Consensus       112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~-dgk~~rlknPld~a  190 (527)
T COG5258         112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFD-DGKVVRLKNPLDEA  190 (527)
T ss_pred             cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEec-CCceEeecCcccHH
Confidence            346678999999999999999999887654433211                1112222222221 1111          


Q ss_pred             ----------EEEEEEeCCCchhhhhhh--HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894           62 ----------VKAQIWDTAGQERYRAIT--SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        62 ----------~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  129 (217)
                                --+.++||.|++.|....  ..+-.+.|-.++++.+++..+-..-+.+    .....-+.|+++++||+|
T Consensus       191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHL----gi~~a~~lPviVvvTK~D  266 (527)
T COG5258         191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHL----GIALAMELPVIVVVTKID  266 (527)
T ss_pred             HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhh----hhhhhhcCCEEEEEEecc
Confidence                      246799999999986554  3344689999999999987653222222    111125799999999999


Q ss_pred             CCCcccC--CHHHHHHHHH----------------------HcC---CcEEEeccCCCCCHHHH
Q 027894          130 LRHLCAV--STEDAKAFAE----------------------REN---TFFMETSALESMNVENA  166 (217)
Q Consensus       130 ~~~~~~~--~~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~~v~~~  166 (217)
                      +.++...  ..+++.++.+                      +.+   +|+|.+|+.+++|.+-+
T Consensus       267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL  330 (527)
T COG5258         267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL  330 (527)
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence            9642211  1122222211                      111   57999999999997643

>cd01858 NGP_1 NGP-1

Probab=98.86  E-value=9e-09  Score=73.18  Aligned_cols=56  Identities=20%  Similarity=0.246  Sum_probs=39.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      ..++|+++|.+|+|||||+|+|.+....... +..+.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            3578999999999999999999987653332 3334444444444332   268999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.86  E-value=2e-08  Score=80.04  Aligned_cols=89  Identities=13%  Similarity=0.069  Sum_probs=68.0

Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHHHHHcCCcEEEeccCCC
Q 027894           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      ...++|.+++|+++....++..++.|+..+..   .++|+++|+||+|+....+. ...+........+.+++++||+++
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg  193 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG  193 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            35679999999999888899999999876543   56899999999999643211 112223344567889999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027894          161 MNVENAFTEVLTQ  173 (217)
Q Consensus       161 ~~v~~~~~~i~~~  173 (217)
                      +|++++++.+...
T Consensus       194 ~GideL~~~L~~k  206 (347)
T PRK12288        194 EGLEELEAALTGR  206 (347)
T ss_pred             cCHHHHHHHHhhC
Confidence            9999999888653

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.85  E-value=2.7e-07  Score=75.67  Aligned_cols=167  Identities=16%  Similarity=0.123  Sum_probs=100.5

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCc-------------------------------------------
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKS-------------------------------------------   44 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-~~~-------------------------------------------   44 (217)
                      ..+...||+|||..++||||.+..+.....-+. +..                                           
T Consensus       304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~  383 (980)
T KOG0447|consen  304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI  383 (980)
T ss_pred             ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence            356789999999999999999998765432221 100                                           


Q ss_pred             ----------ccceeEEEEEEEECCeE-EEEEEEeCCCc-------------hhhhhhhHhhhcCCcEEEEEEeCCChhh
Q 027894           45 ----------TIGVEFATRSIRVEDKI-VKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDVTRHVT  100 (217)
Q Consensus        45 ----------~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s  100 (217)
                                .-+....+..+++.+.+ -++.++|.||.             +....+..++..+.+++|+|+--...+.
T Consensus       384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA  463 (980)
T KOG0447|consen  384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA  463 (980)
T ss_pred             HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence                      00222233333343332 36789999992             3345667788999999999984332221


Q ss_pred             HHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-----EEEeccCCCCCHHHHHHHHHHHHH
Q 027894          101 FENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-----FMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       101 ~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-----~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      -.  ...-..+......+...|+|++|.|+.+.+-.+...++.+....-+|     ||-+-.-.|.. ++-.+.|-++=.
T Consensus       464 ER--SnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGns-sdSIdaIR~YEE  540 (980)
T KOG0447|consen  464 ER--SIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNS-SESIEAIREYEE  540 (980)
T ss_pred             hh--hhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCc-chhHHHHHHHHH
Confidence            11  11122233333467889999999999887778888888887764443     55443333322 333444444433


Q ss_pred             HHh
Q 027894          176 HVV  178 (217)
Q Consensus       176 ~~~  178 (217)
                      +.+
T Consensus       541 ~FF  543 (980)
T KOG0447|consen  541 EFF  543 (980)
T ss_pred             HHh
Confidence            333

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.82  E-value=1.6e-08  Score=76.05  Aligned_cols=157  Identities=18%  Similarity=0.154  Sum_probs=95.1

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc-ccceeEEEEEEEECCeEEEEEEEeCCC----------chhhhh
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRVEDKIVKAQIWDTAG----------QERYRA   77 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~   77 (217)
                      ..+..++++++|.+|+|||||++-++.......... ..+.+.....+.+.   ..+.++|.||          ...+..
T Consensus       132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhH
Confidence            456779999999999999999999988654333222 44444445555444   3578999999          234555


Q ss_pred             hhHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc----CCHHHHHH----HH-
Q 027894           78 ITSAYYRGA---VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA----VSTEDAKA----FA-  145 (217)
Q Consensus        78 ~~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----~~~~~~~~----~~-  145 (217)
                      ....|+.+-   --+++++|++-+-.-.+. ..++.+.+   .++|+.+|+||+|......    -....+..    +. 
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~-~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~  284 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPIQPTDN-PEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR  284 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCCCCCCh-HHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence            555555432   235667776643211111 11122222   5799999999999842110    00011111    11 


Q ss_pred             --HHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894          146 --ERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus       146 --~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                        -....|++.+|+.++.|+++++..|.+
T Consensus       285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cceeccCCceeeecccccCceeeeeehhh
Confidence              112356778999999999998876654

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=4.1e-08  Score=75.91  Aligned_cols=145  Identities=20%  Similarity=0.119  Sum_probs=100.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC--------------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   76 (217)
                      -+.++|.-+|+...|||||-.++..-....              .....-+++....++.+.....++--.|+||+..|-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            356899999999999999988775421100              011334677778888887777788899999999998


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc---CCHHHHHHHHHHcC----
Q 027894           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA---VSTEDAKAFAEREN----  149 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~----  149 (217)
                      .+...-..+.|+.|+|+.++|..=-+.-+.++. ..+.  .-..+++++||.|+.++.+   .-+.+++++...++    
T Consensus       132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLL-ArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd  208 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLL-ARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD  208 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCCcchHHHHHH-HHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            888888889999999999999653222222211 1111  1244777899999974332   23456777777766    


Q ss_pred             -CcEEEeccC
Q 027894          150 -TFFMETSAL  158 (217)
Q Consensus       150 -~~~~~~Sa~  158 (217)
                       +|++.-||+
T Consensus       209 ~~PvI~GSAL  218 (449)
T KOG0460|consen  209 NTPVIRGSAL  218 (449)
T ss_pred             CCCeeecchh
Confidence             468777754

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.80  E-value=4e-08  Score=79.02  Aligned_cols=95  Identities=17%  Similarity=0.191  Sum_probs=68.9

Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHH----HHHHH
Q 027894           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAK----AFAER  147 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~  147 (217)
                      .+.|......+.+.++++++|+|+.+...     .|...+.... .+.|+++|+||+|+.+ +....+...    ++++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~-~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV-GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh-CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence            46788888888899999999999977542     2333333332 3678999999999864 233333443    34556


Q ss_pred             cCC---cEEEeccCCCCCHHHHHHHHHHH
Q 027894          148 ENT---FFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       148 ~~~---~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      .++   .++.+||+++.|++++|+.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   38999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01856 YlqF YlqF

Probab=98.75  E-value=3e-08  Score=71.54  Aligned_cols=58  Identities=22%  Similarity=0.315  Sum_probs=41.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      ...++++++|.+|+|||||++++.+..+... ....+.+.....+.++   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            3457999999999999999999999776432 2333344444445443   34789999993

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=2.8e-07  Score=75.89  Aligned_cols=141  Identities=18%  Similarity=0.162  Sum_probs=85.4

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ..+-++.+=++|||++|+||||||+.|...-.........    ...++ +.++..+++++++|..  . +......+-+
T Consensus        63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~----GPiTv-vsgK~RRiTflEcp~D--l-~~miDvaKIa  134 (1077)
T COG5192          63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR----GPITV-VSGKTRRITFLECPSD--L-HQMIDVAKIA  134 (1077)
T ss_pred             cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC----CceEE-eecceeEEEEEeChHH--H-HHHHhHHHhh
Confidence            3345566788999999999999999987753211111111    11222 5677789999999832  2 2344456779


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccCCHHHHH----HHHHH--cCCcEEEeccCC
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAVSTEDAK----AFAER--ENTFFMETSALE  159 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~----~~~~~--~~~~~~~~Sa~~  159 (217)
                      |.+++++|..-.-..+.+ .+++-+..   .+.| ++-|++..|+........+..+    .|+.+  .|+.+|.+|-..
T Consensus       135 DLVlLlIdgnfGfEMETm-EFLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         135 DLVLLLIDGNFGFEMETM-EFLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             heeEEEeccccCceehHH-HHHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            999999998765443333 34444443   3344 5668999999643222222222    22222  467888888654

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=9.1e-09  Score=78.40  Aligned_cols=165  Identities=18%  Similarity=0.177  Sum_probs=102.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCc---CCCCCCcccceeEEEE--EE-EE--------------------------
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATR--SI-RV--------------------------   57 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~~~~~~~~~~--~~-~~--------------------------   57 (217)
                      .+-+++|.-+|+.-.||||+++++.+-.   |........++.....  .+ ..                          
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            4568999999999999999999886631   1111111111110000  00 00                          


Q ss_pred             ---CC--e-EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           58 ---ED--K-IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        58 ---~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                         .+  + ..++.++|+||++-.......-..-.|++++++.............-+..+...  +=..++++-||+|+.
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli  192 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLI  192 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhh
Confidence               00  0 135789999999877766666666678899988877533222222222222111  224578889999996


Q ss_pred             CcccC--CHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          132 HLCAV--STEDAKAFAER---ENTFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       132 ~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      .+.+.  ..+++..|...   .+.|++++||.-+.|++.+.+.|+..+..
T Consensus       193 ~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  193 KESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             hHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence            54322  23455566554   45789999999999999999999887753

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=4.6e-07  Score=75.97  Aligned_cols=144  Identities=15%  Similarity=0.158  Sum_probs=82.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeE---------------------------------------
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEF---------------------------------------   50 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~---------------------------------------   50 (217)
                      +...||++.|..++||||++|+++.....|... +++..-.                                       
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            456899999999999999999998865544321 1110000                                       


Q ss_pred             ---EEEEEEECCeE-----EEEEEEeCCCch---hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCC
Q 027894           51 ---ATRSIRVEDKI-----VKAQIWDTAGQE---RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNI  119 (217)
Q Consensus        51 ---~~~~~~~~~~~-----~~~~l~Dt~G~~---~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~  119 (217)
                         ....+.++...     -.+.++|.||.+   ....-...+...+|++++|.++.+.-+..+.. ++.....   .+.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~---~Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSE---EKP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhc---cCC
Confidence               00001111110     146789999943   34444566678899999999987765443332 3333322   345


Q ss_pred             cEEEEEeCCCCCCcccCCHHHHHHHHHHcCC--------cEEEeccC
Q 027894          120 VIMLVGNKADLRHLCAVSTEDAKAFAERENT--------FFMETSAL  158 (217)
Q Consensus       120 p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~  158 (217)
                      .++|+-||+|.....+.-.+++..-.....+        -+|++|++
T Consensus       263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            5777789999865333333333333333221        27778865

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=1.6e-07  Score=73.60  Aligned_cols=157  Identities=21%  Similarity=0.236  Sum_probs=98.2

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------Cc-------ccceeEEEEEEEEC----
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KS-------TIGVEFATRSIRVE----   58 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~----------------~~-------~~~~~~~~~~~~~~----   58 (217)
                      ++.++-..+|++++|.-.+|||||+-.|..+......                ..       ..+++.....+.+.    
T Consensus       160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t  239 (591)
T KOG1143|consen  160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT  239 (591)
T ss_pred             CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence            3455566899999999999999999988776443321                11       11222222222221    


Q ss_pred             ------CeEEEEEEEeCCCchhhhhhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCC
Q 027894           59 ------DKIVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        59 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~  130 (217)
                            ...-.++++|.+|+.+|.......+.  -.|.+++|+++...-++..-+. +..+..   -++|++++++|+|+
T Consensus       240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~A---L~iPfFvlvtK~Dl  315 (591)
T KOG1143|consen  240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIAA---LNIPFFVLVTKMDL  315 (591)
T ss_pred             HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHHH---hCCCeEEEEEeecc
Confidence                  11135789999999999877655544  3578899999987766543332 222222   57999999999999


Q ss_pred             CCcc------------------------cCCHHHHHHHHHH----cCCcEEEeccCCCCCHHHH
Q 027894          131 RHLC------------------------AVSTEDAKAFAER----ENTFFMETSALESMNVENA  166 (217)
Q Consensus       131 ~~~~------------------------~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~~  166 (217)
                      ....                        ..+.+++-..+.+    .=.|+|.+|+.+|+|++-+
T Consensus       316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence            5421                        0122222222222    2257999999999997654

>cd01855 YqeH YqeH

Probab=98.71  E-value=3.3e-08  Score=72.56  Aligned_cols=55  Identities=22%  Similarity=0.411  Sum_probs=38.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-------CCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .+++++|.+|+|||||||+|.+.....       ......+++.....+.++.   .+.++||||
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            589999999999999999999864311       1122234555555555543   479999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00092 GTP-binding protein YchF

Probab=98.71  E-value=1.7e-07  Score=74.62  Aligned_cols=83  Identities=18%  Similarity=0.040  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcC-CCCCCcccceeEEEEEEEECCe---------------EEEEEEEeCCCchh---
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRVEDK---------------IVKAQIWDTAGQER---   74 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~---   74 (217)
                      ++++++|.|++|||||++.+++... .....+..+.......+.+.+.               ...+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999876 4443344445555555555442               23678999999422   


Q ss_pred             ----hhhhhHhhhcCCcEEEEEEeCC
Q 027894           75 ----YRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        75 ----~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                          ....-...++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                1223344578999999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=8.9e-08  Score=80.92  Aligned_cols=120  Identities=19%  Similarity=0.233  Sum_probs=87.1

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC--------------CCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE--------------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      +......-+|+++.+...|||||+..|+...--.+              ..-+-+++.....+..-.+.+.+.++|+||+
T Consensus         3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh   82 (887)
T KOG0467|consen    3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH   82 (887)
T ss_pred             CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence            44566778899999999999999999876432111              1123344444445555556688999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCC
Q 027894           73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~  130 (217)
                      -.|.+......+-+|++++++|+..+-..+......+.+.    .+..+++|+||+|.
T Consensus        83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkidr  136 (887)
T KOG0467|consen   83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKIDR  136 (887)
T ss_pred             cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence            9999988888999999999999987655444444444443    45567899999994

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.70  E-value=5.6e-08  Score=75.48  Aligned_cols=58  Identities=24%  Similarity=0.411  Sum_probs=42.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      ...++|+++|.+|+|||||+|+|.+....... ...+.+.....+.+..   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence            34689999999999999999999987644332 2334444455555543   4799999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=8.4e-08  Score=72.31  Aligned_cols=116  Identities=23%  Similarity=0.372  Sum_probs=73.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----CcccceeEEEEEEEECCeEEEEEEEeCCCc-------hhhhhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES----KSTIGVEFATRSIRVEDKIVKAQIWDTAGQ-------ERYRAI   78 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~~~~   78 (217)
                      .-+.++|+.||.+|.||||||..|.+-.+....    .++.........+.-.+..++++++||.|-       ++|..+
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i  118 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI  118 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence            346799999999999999999999998775433    244444444444545677788999999981       111100


Q ss_pred             ------------------h--Hhhhc--CCcEEEEEEeCCChhhHHHHHH-HHHHHhccCCCCCcEEEEEeCCCC
Q 027894           79 ------------------T--SAYYR--GAVGALLVYDVTRHVTFENVER-WLKELRGHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        79 ------------------~--~~~~~--~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~  130 (217)
                                        .  ...++  ..++++|.+.++. .++..+.- .+..+.    .++.+|.|+.|.|-
T Consensus       119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDt  188 (406)
T KOG3859|consen  119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADT  188 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhh
Confidence                              0  11122  3567777777654 34554432 334443    45667888889995

>cd01858 NGP_1 NGP-1

Probab=98.69  E-value=1e-07  Score=67.70  Aligned_cols=89  Identities=16%  Similarity=0.119  Sum_probs=57.9

Q ss_pred             hhcCCcEEEEEEeCCChhh--HHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894           82 YYRGAVGALLVYDVTRHVT--FENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE  159 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      .+..+|++++|+|+.++..  ...+..++.   .. ..+.|+++|+||+|+.+... .......+.+.+....+.+||+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccc
Confidence            4678999999999998743  223333332   22 24589999999999854221 11122222222333357899999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQIY  175 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~~  175 (217)
                      +.|++++++.+.+.+.
T Consensus        80 ~~~~~~L~~~l~~~~~   95 (157)
T cd01858          80 PFGKGSLIQLLRQFSK   95 (157)
T ss_pred             cccHHHHHHHHHHHHh
Confidence            9999999999877543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.68  E-value=4.1e-06  Score=58.40  Aligned_cols=145  Identities=17%  Similarity=0.191  Sum_probs=80.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCC-Cc------------------
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA-GQ------------------   72 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~------------------   72 (217)
                      ..+||++.|+||||||||+.++.+......+ .-  -.+....+.-+++..=|.+.|+. |.                  
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCc-ee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            4689999999999999999988764332221 11  22344455556666777777765 30                  


Q ss_pred             ---hhhh----hhhHhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHH
Q 027894           73 ---ERYR----AITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAF  144 (217)
Q Consensus        73 ---~~~~----~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~  144 (217)
                         +.+.    ......++.+|++  ++|---+  .+. ...+...+......+.|++.++.+.+..+       .+.+ 
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P-------~v~~-  148 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP-------LVQR-  148 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEE--EEecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh-------HHHH-
Confidence               1111    2223334556744  4443222  221 13444555555557788888887776422       1222 


Q ss_pred             HHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          145 AERENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       145 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      .+..+..++.   .+.+|-+.++..|+..+
T Consensus       149 ik~~~~v~v~---lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         149 IKKLGGVYVF---LTPENRNRILNEILSVL  175 (179)
T ss_pred             hhhcCCEEEE---EccchhhHHHHHHHHHh
Confidence            3333433333   55566667777777655

>cd01859 MJ1464 MJ1464

Probab=98.68  E-value=7.4e-08  Score=68.36  Aligned_cols=56  Identities=21%  Similarity=0.318  Sum_probs=39.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      ...+++++|.+|+|||||++++.+..... ..++.+.+.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            45788999999999999999999765332 234445444433333333   589999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.68  E-value=8.5e-08  Score=74.86  Aligned_cols=58  Identities=26%  Similarity=0.402  Sum_probs=42.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      ...++|+++|.+|+|||||+|+|.+....... ...+.+.....+..+.   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            35689999999999999999999987653332 3344455555555543   4789999994

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.66  E-value=5.2e-08  Score=77.08  Aligned_cols=57  Identities=26%  Similarity=0.381  Sum_probs=46.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      ..++++++|.||+|||||||+|.+....... ...|.+.....+..+..   +.++||||-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCc
Confidence            3578999999999999999999998763333 44577777888877664   799999994

>cd01856 YlqF YlqF

Probab=98.65  E-value=2e-07  Score=67.24  Aligned_cols=100  Identities=17%  Similarity=0.054  Sum_probs=64.9

Q ss_pred             CCCc-hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH
Q 027894           69 TAGQ-ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER  147 (217)
Q Consensus        69 t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  147 (217)
                      .||+ .+........+.++|++++|+|+.++...... .+...+     .+.|+++|+||+|+.+...  .....++...
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~   73 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFES   73 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence            3554 23334456678899999999999876542211 122222     3578999999999853211  1112233333


Q ss_pred             cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          148 ENTFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      .+..++.+||+++.|++++.+.+.+.+..
T Consensus        74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~~  102 (171)
T cd01856          74 KGEKVLFVNAKSGKGVKKLLKAAKKLLKD  102 (171)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            45568999999999999999999887643

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.63  E-value=1e-07  Score=73.73  Aligned_cols=86  Identities=16%  Similarity=0.148  Sum_probs=62.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC---------------eEEEEEEEeCCCch--
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED---------------KIVKAQIWDTAGQE--   73 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~Dt~G~~--   73 (217)
                      ...++|.+||.|++|||||+|.|++....+.-.|..+++.....+.+..               .+..++++|++|.-  
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            3678999999999999999999999988776667667776666655532               23578999999821  


Q ss_pred             -----hhhhhhHhhhcCCcEEEEEEeCC
Q 027894           74 -----RYRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        74 -----~~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                           .....-..-++.+|+++.|+++.
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence                 11111223457899999999875

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.61  E-value=8.2e-08  Score=70.57  Aligned_cols=119  Identities=17%  Similarity=0.187  Sum_probs=81.6

Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHhccCC-CCCcEEEEEeCC
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV----------TFENVERWLKELRGHTD-SNIVIMLVGNKA  128 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~  128 (217)
                      ..+.+.+.|.+|+..-+.-|.+++.++-.++|++.++..+          -.++...++..+..... .+.++|+++||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            3356789999999988899999999988888887776422          22233344445544443 678999999999


Q ss_pred             CCCCcc----------------cCCHHHHHHHHHHc----C------CcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          129 DLRHLC----------------AVSTEDAKAFAERE----N------TFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       129 D~~~~~----------------~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      |+.+++                ......+++|..+.    +      +.-.++.|.+-+|++-+|..+-..+++..
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            985322                22334455555431    1      12355778889999999998888777654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.58  E-value=3.9e-07  Score=64.60  Aligned_cols=86  Identities=17%  Similarity=0.022  Sum_probs=55.9

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      |++++|+|+.++.+....  ++.. ......+.|+++|+||+|+..... .......+....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~-~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEV-LRKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHH-HHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            689999999887654322  2221 111125689999999999854211 011112233334556899999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          167 FTEVLTQIYH  176 (217)
Q Consensus       167 ~~~i~~~~~~  176 (217)
                      ++.+.+...+
T Consensus        77 ~~~i~~~~~~   86 (155)
T cd01849          77 ESAFTKQTNS   86 (155)
T ss_pred             HHHHHHHhHH
Confidence            9999877543

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=6.7e-08  Score=76.74  Aligned_cols=118  Identities=18%  Similarity=0.223  Sum_probs=90.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC--------cCCCCC--------CcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRN--------EFSLES--------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER   74 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      ...-+|.++.+..+||||.-.+++.-        .+....        ....|++.....+.++.+..++.++||||+-.
T Consensus        35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd  114 (753)
T KOG0464|consen   35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence            34568999999999999999887542        111111        12236777778888888889999999999998


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      |+--...+++-.|+++.|||.+..-.-+.+-.|.+.    ...++|-+.++||+|...
T Consensus       115 f~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhh
Confidence            988888899999999999999876555555556443    236789999999999854

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.58  E-value=7.4e-07  Score=81.70  Aligned_cols=112  Identities=25%  Similarity=0.334  Sum_probs=67.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCC----Cc--ccceeEEEEEEEECCeEEEEEEEeCCCc----h----hhhhhhHh
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEFSLES----KS--TIGVEFATRSIRVEDKIVKAQIWDTAGQ----E----RYRAITSA   81 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----~----~~~~~~~~   81 (217)
                      -+|+|++|+||||+|++- +..++-..    ..  ..+-+..-..+ +.+   +..++||+|.    +    .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-f~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-FTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-ecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            489999999999999876 33332211    01  11111111111 112   3579999992    1    12233444


Q ss_pred             hh---------cCCcEEEEEEeCCChh-----hH----HHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           82 YY---------RGAVGALLVYDVTRHV-----TF----ENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        82 ~~---------~~~d~ii~v~d~~~~~-----s~----~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      ++         +..+++|+++|+.+--     ..    ..+..-+..+....+-..|+.+++||+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            33         3589999999987521     11    2334445556666667899999999999853

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.57  E-value=6e-07  Score=67.25  Aligned_cols=117  Identities=16%  Similarity=0.199  Sum_probs=75.3

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHhccCC-CCCcEEEEEeCCCC
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV----------TFENVERWLKELRGHTD-SNIVIMLVGNKADL  130 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~  130 (217)
                      +++.++|.+|+..-+.-|...+..+-++|||+..+.-+          -+.+.-.++..+...+. ..+-+|+++||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            56899999999999999999999999999999887421          12222222222322222 45668999999998


Q ss_pred             CCcc----------------------------c----C------CHHHHHHHHHH-----cCCcEEEeccCCCCCHHHHH
Q 027894          131 RHLC----------------------------A----V------STEDAKAFAER-----ENTFFMETSALESMNVENAF  167 (217)
Q Consensus       131 ~~~~----------------------------~----~------~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      ..++                            .    +      ..++.......     +-+.+.++.|.+-++++.+|
T Consensus       282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF  361 (379)
T KOG0099|consen  282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  361 (379)
T ss_pred             HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence            3110                            0    0      00111111111     12446778899999999999


Q ss_pred             HHHHHHHHHHh
Q 027894          168 TEVLTQIYHVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      +.....+....
T Consensus       362 nDcrdiIqr~h  372 (379)
T KOG0099|consen  362 NDCRDIIQRMH  372 (379)
T ss_pred             HHHHHHHHHHH
Confidence            99887776554

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.57  E-value=2.5e-06  Score=68.36  Aligned_cols=143  Identities=17%  Similarity=0.199  Sum_probs=84.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC--------------ccccee----------EEEEEEEE-CCeEEEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK--------------STIGVE----------FATRSIRV-EDKIVKAQI   66 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~--------------~~~~~~----------~~~~~~~~-~~~~~~~~l   66 (217)
                      ..+=|.|||+.-+||||||++|....+.|...              +..|.+          .....+.+ ++..+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            45678999999999999999996643222110              111111          11123333 466789999


Q ss_pred             EeCCC-------------chhh------------hhhhHhh----h--cCCcEEEEEEeCC----ChhhHHHH-HHHHHH
Q 027894           67 WDTAG-------------QERY------------RAITSAY----Y--RGAVGALLVYDVT----RHVTFENV-ERWLKE  110 (217)
Q Consensus        67 ~Dt~G-------------~~~~------------~~~~~~~----~--~~~d~ii~v~d~~----~~~s~~~~-~~~~~~  110 (217)
                      +|+.|             .+++            .....--    +  +..-++++.-|-+    .++++..+ ++....
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            99988             0111            1000000    1  1122444444443    13444444 445666


Q ss_pred             HhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894          111 LRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE  159 (217)
Q Consensus       111 l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      |..   -++|+++++|-.+...  +...+...++..+++++++.+++..
T Consensus       176 Lk~---igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~  219 (492)
T PF09547_consen  176 LKE---IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ  219 (492)
T ss_pred             HHH---hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH
Confidence            665   5699999999998543  3455667778888999998888764

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.53  E-value=9.8e-08  Score=67.33  Aligned_cols=58  Identities=26%  Similarity=0.334  Sum_probs=33.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCC------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLE------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      .++++|++|||||||||.|.+......      .....-++.....+.++..   ..++||||...+
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            579999999999999999998742221      1111111222334444332   478999996544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.51  E-value=3e-07  Score=65.22  Aligned_cols=56  Identities=20%  Similarity=0.270  Sum_probs=38.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      ....+|+++|.+|+|||||+|.+.+..... ...+..+..  ...+...   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence            356889999999999999999999876422 222222222  2233333   2479999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.49  E-value=2e-06  Score=67.93  Aligned_cols=143  Identities=17%  Similarity=0.178  Sum_probs=78.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC---------------------cccceeEEEEEEEE-------------C
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESK---------------------STIGVEFATRSIRV-------------E   58 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~   58 (217)
                      .--|+++|++|+||||++..|..........                     ...+..+.......             .
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~  193 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK  193 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999886532111000                     00011111110000             0


Q ss_pred             CeEEEEEEEeCCCchhh--------hhhhHh----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 027894           59 DKIVKAQIWDTAGQERY--------RAITSA----YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN  126 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~--------~~~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~n  126 (217)
                      ...+.+.++||||....        ......    .-...+..++|+|++...  +.+... ..+....   .+.-+|+|
T Consensus       194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giIlT  267 (318)
T PRK10416        194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGIILT  267 (318)
T ss_pred             hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEEEE
Confidence            12357899999995321        111111    112467789999998643  223222 2221111   23467899


Q ss_pred             CCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894          127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus       127 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      |.|...    ..-.+...+...+.|+.+++  +|++++++-
T Consensus       268 KlD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        268 KLDGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            999543    23345555666799988888  677776653

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.48  E-value=1.4e-06  Score=67.70  Aligned_cols=102  Identities=16%  Similarity=0.050  Sum_probs=66.2

Q ss_pred             CCCch-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH
Q 027894           69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER  147 (217)
Q Consensus        69 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  147 (217)
                      .|||- +........+..+|++++|+|+.++.+.... .+...+     .+.|+++|+||+|+.+...  .....+....
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence            35652 2234455667899999999999876543221 111222     3578999999999854211  1111222333


Q ss_pred             cCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          148 ENTFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      .+.+++.+||+++.|++++.+.+.+.+.+..
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~  106 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKLLKEKN  106 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence            4667899999999999999999888775543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.47  E-value=7e-07  Score=62.26  Aligned_cols=77  Identities=21%  Similarity=0.200  Sum_probs=52.2

Q ss_pred             HhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894           80 SAYYRGAVGALLVYDVTRHVTFE--NVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ...+..+|++++|+|+.++.+..  .+..++...   . .+.|+++|+||+|+.++.  ...+..++....+..++++||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~--~~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEE--QRKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHH--HHHHHHHHHHhcCCeEEEEEe
Confidence            34568899999999998876543  334444332   1 468999999999985422  122334455556778999999


Q ss_pred             CCCCC
Q 027894          158 LESMN  162 (217)
Q Consensus       158 ~~~~~  162 (217)
                      .++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            87653

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.47  E-value=1.2e-06  Score=62.33  Aligned_cols=63  Identities=13%  Similarity=0.092  Sum_probs=36.8

Q ss_pred             EEEEEEeCCCchhhhhhhHh--------hhcCCcEEEEEEeCCChhhH-HHHHHHHHHHhccCCCCCcEEEEEeCCCC
Q 027894           62 VKAQIWDTAGQERYRAITSA--------YYRGAVGALLVYDVTRHVTF-ENVERWLKELRGHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~iiv~nK~D~  130 (217)
                      .+..++|++|-.........        ..-..|.+++++|+...... .....+..++....      ++|+||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence            56789999995322222211        22347889999997653321 12233445554322      678999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.44  E-value=4.1e-07  Score=72.58  Aligned_cols=58  Identities=24%  Similarity=0.367  Sum_probs=36.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCC-c-----ccceeEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEFSLESK-S-----TIGVEFATRSIRVEDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   76 (217)
                      ++|+|.+|||||||||+|++........ +     ..-++.....+.+.+.   ..++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            7899999999999999999864322111 1     0012223333444322   2599999976553

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.44  E-value=2.9e-06  Score=63.82  Aligned_cols=86  Identities=17%  Similarity=0.101  Sum_probs=52.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCCCC---cccceeEEEEEEEECCeEEEEEEEeCCCchh------hhhhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRN--EFSLESK---STIGVEFATRSIRVEDKIVKAQIWDTAGQER------YRAIT   79 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~   79 (217)
                      .+..-|+|+|++++|||+|+|.|++.  .+.....   -|.++-.....+.. +....+.++||+|...      .....
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence            35577999999999999999999998  5544332   22222222222111 2346799999999432      12222


Q ss_pred             HhhhcC--CcEEEEEEeCCC
Q 027894           80 SAYYRG--AVGALLVYDVTR   97 (217)
Q Consensus        80 ~~~~~~--~d~ii~v~d~~~   97 (217)
                      ...+..  ++++|+..+...
T Consensus        84 ~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          84 LFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcc
Confidence            233333  788888777654

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.44  E-value=3.8e-07  Score=74.22  Aligned_cols=57  Identities=23%  Similarity=0.231  Sum_probs=44.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      ...+.|++||.|||||||+||.|.+...-..+ .|.|-+.+-.++.+..   .+.+.|+||
T Consensus       312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPG  368 (562)
T KOG1424|consen  312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPG  368 (562)
T ss_pred             CceeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCC
Confidence            34799999999999999999999998764433 5666666666665654   378999999

>PRK14974 cell division protein FtsY; Provisional

Probab=98.43  E-value=2.8e-06  Score=67.40  Aligned_cols=95  Identities=14%  Similarity=0.040  Sum_probs=55.0

Q ss_pred             EEEEEEeCCCchhhh----hhhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERYR----AITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      ..+.++||+|.....    .....+  ..+.|.+++|+|+.....  .+.. ...+....   .+--+|+||.|...   
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~~~-a~~f~~~~---~~~giIlTKlD~~~---  293 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AVEQ-AREFNEAV---GIDGVILTKVDADA---  293 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HHHH-HHHHHhcC---CCCEEEEeeecCCC---
Confidence            468999999954211    111112  235788999999876532  1211 12222111   12466799999743   


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894          136 VSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                       ..-.+..++...+.|+.+++  +|++++++..
T Consensus       294 -~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        294 -KGGAALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             -CccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence             22334455556688888877  6888876653

>PRK01889 GTPase RsgA; Reviewed

Probab=98.39  E-value=1.8e-06  Score=69.41  Aligned_cols=84  Identities=17%  Similarity=0.149  Sum_probs=60.7

Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-HcCCcEEEeccCCC
Q 027894           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-RENTFFMETSALES  160 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  160 (217)
                      ...++|.+++|+++....+...++.++..+..   .+++.++|+||+|+.+..   .+....+.. ..+.+++.+|++++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g  182 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG  182 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence            35789999999999755555567777777665   457778999999996531   111222222 35678999999999


Q ss_pred             CCHHHHHHHHH
Q 027894          161 MNVENAFTEVL  171 (217)
Q Consensus       161 ~~v~~~~~~i~  171 (217)
                      .|++++..++-
T Consensus       183 ~gl~~L~~~L~  193 (356)
T PRK01889        183 EGLDVLAAWLS  193 (356)
T ss_pred             ccHHHHHHHhh
Confidence            99999887763

>PRK13796 GTPase YqeH; Provisional

Probab=98.38  E-value=3.8e-06  Score=67.78  Aligned_cols=93  Identities=19%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             hhhhhhhHhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH----HHHH
Q 027894           73 ERYRAITSAYYRGAV-GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA----FAER  147 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~~  147 (217)
                      +.|....... ...+ .+++|+|+.|...     .|...+.... .+.|+++|+||+|+.+ .....++...    +++.
T Consensus        57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~-~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~  128 (365)
T PRK13796         57 DDFLKLLNGI-GDSDALVVNVVDIFDFNG-----SWIPGLHRFV-GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKE  128 (365)
T ss_pred             HHHHHHHHhh-cccCcEEEEEEECccCCC-----chhHHHHHHh-CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHh
Confidence            3455544443 4444 8999999987442     2333333332 3678999999999964 2333333333    3455


Q ss_pred             cCC---cEEEeccCCCCCHHHHHHHHHHH
Q 027894          148 ENT---FFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       148 ~~~---~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      .++   .++.+||+++.|++++++.|.+.
T Consensus       129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        129 LGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            565   58999999999999999998664

>PRK12289 GTPase RsgA; Reviewed

Probab=98.38  E-value=6.5e-07  Score=71.50  Aligned_cols=56  Identities=27%  Similarity=0.296  Sum_probs=35.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCC-cc-----cceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEFSLESK-ST-----IGVEFATRSIRVEDKIVKAQIWDTAGQER   74 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      ++|+|++|+|||||||.|++........ +.     --++.....+...+.   ..++||||...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence            7999999999999999999764322111 11     002233344444332   27999999643

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.36  E-value=1.1e-05  Score=62.36  Aligned_cols=94  Identities=15%  Similarity=0.045  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCchhhhhhhH-------hhh-----cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894           62 VKAQIWDTAGQERYRAITS-------AYY-----RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~-------~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  129 (217)
                      +.+.++||||.........       ...     ..+|.+++|+|++...  +.+... ..+....   .+.-+|+||.|
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~-~~f~~~~---~~~g~IlTKlD  228 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQA-KVFNEAV---GLTGIILTKLD  228 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHH-HHHHhhC---CCCEEEEEccC
Confidence            6789999999543221111       111     2378899999997542  233222 2222111   13467899999


Q ss_pred             CCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894          130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      ...    ..-....+....+.|+.+++  +|++++++-
T Consensus       229 e~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       229 GTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            743    23445555566788988777  667665543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.36  E-value=2.5e-06  Score=67.21  Aligned_cols=151  Identities=19%  Similarity=0.165  Sum_probs=83.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCcccceeEEEEEEEE------------------
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKSTIGVEFATRSIRV------------------   57 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~------------------   57 (217)
                      ..+||+++|...+|||||+-.|........                +..|........-+..                  
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            468999999999999999987766433221                1111111111111110                  


Q ss_pred             ---CCeEEEEEEEeCCCchhhhhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           58 ---EDKIVKAQIWDTAGQERYRAITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        58 ---~~~~~~~~l~Dt~G~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                         ++..-.++++|.+|+++|......-.  +-.|..++++-+.-.- .-..+.-+..   ...-.+|+++|.+|+|+-.
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgL---ALaL~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGL---ALALHVPVFVVVTKIDMCP  287 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhh---hhhhcCcEEEEEEeeccCc
Confidence               11123478999999999976653322  3456666766654321 1111111111   1124689999999999854


Q ss_pred             cccC--CHHHHHHHHHH--------------------------cCCcEEEeccCCCCCHHHH
Q 027894          133 LCAV--STEDAKAFAER--------------------------ENTFFMETSALESMNVENA  166 (217)
Q Consensus       133 ~~~~--~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~v~~~  166 (217)
                      .+..  ....+..+.+.                          .=||+|.+|..+|+|+.-+
T Consensus       288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL  349 (641)
T KOG0463|consen  288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL  349 (641)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence            2211  11112222221                          1257899999999997644

>PRK13796 GTPase YqeH; Provisional

Probab=98.35  E-value=7.8e-07  Score=71.71  Aligned_cols=56  Identities=25%  Similarity=0.430  Sum_probs=37.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcC----CCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEF----SLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      .+++++|.+|||||||||+|+....    ........+++.....+.+++.   ..++||||.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence            4799999999999999999986431    1111223344444555555432   479999995

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.35  E-value=1.2e-06  Score=70.47  Aligned_cols=56  Identities=23%  Similarity=0.445  Sum_probs=37.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC----CCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFS----LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      .+|+++|.+|+|||||+|+|++....    .......+++.....+..++   .+.++||||-
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~  214 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGI  214 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCC
Confidence            48999999999999999999985421    11122233444444555533   2579999995

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.34  E-value=3.6e-06  Score=65.80  Aligned_cols=101  Identities=16%  Similarity=0.116  Sum_probs=66.1

Q ss_pred             CCCch-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH
Q 027894           69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER  147 (217)
Q Consensus        69 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  147 (217)
                      .|||- +-.......+..+|++++|+|+.++.+...  .++..+.    .+.|+++|+||+|+.+...  .....++...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            46652 223334556789999999999987654322  1122222    2588999999999853210  1122222334


Q ss_pred             cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894          148 ENTFFMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                      .+.+++.+|++++.|++++.+.+.+.+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            467789999999999999999988877554

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.33  E-value=7.8e-06  Score=66.70  Aligned_cols=86  Identities=14%  Similarity=-0.001  Sum_probs=46.4

Q ss_pred             EEEEEEEeCCCchhhhh----hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894           61 IVKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                      .+++.++||+|......    ....+  ..+.+.+++|+|++....-.   .....+...   -.+--+|+||.|...  
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~a--  253 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHA--  253 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCC--
Confidence            36789999999532211    11111  23567899999987653322   122222221   134577899999642  


Q ss_pred             cCCHHHHHHHHHHcCCcEEEec
Q 027894          135 AVSTEDAKAFAERENTFFMETS  156 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~S  156 (217)
                        ..-.+.......+.|+.+++
T Consensus       254 --rgG~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       254 --KGGGALSAVAATKSPIIFIG  273 (429)
T ss_pred             --CccHHhhhHHHHCCCeEEEc
Confidence              22223444445566654444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.32  E-value=1.3e-06  Score=66.58  Aligned_cols=57  Identities=23%  Similarity=0.250  Sum_probs=35.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC------CcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLES------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      .++++|++|+|||||||+|.+.......      ....-++.....+...+    ..++||||...+
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~  184 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF  184 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence            6799999999999999999986432211      11111222333343433    279999996443

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=1.9e-05  Score=59.05  Aligned_cols=180  Identities=21%  Similarity=0.287  Sum_probs=106.6

Q ss_pred             eeEEEEEcCCCC--ChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894           13 LYKVVLIGDSGV--GKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE--DKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        13 ~~~I~vvG~~~~--GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ..-++|+|-+|+  ||.+|+.+|....+.....+...+.++..++...  ...+.+.+.... .+.+.. .........+
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lp-n~~~a~pl~a   81 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLP-NAEIAEPLQA   81 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccC-Ccccccceee
Confidence            356789999998  9999999999888877666655555554444322  112233332211 112211 1122344567


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc---------------------------c-------
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL---------------------------C-------  134 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~---------------------------~-------  134 (217)
                      ++++||.+....+..+..|+..-.... .+ ..+.++||.|....                           .       
T Consensus        82 ~vmvfdlse~s~l~alqdwl~htdins-fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg  159 (418)
T KOG4273|consen   82 FVMVFDLSEKSGLDALQDWLPHTDINS-FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG  159 (418)
T ss_pred             EEEEEeccchhhhHHHHhhcccccccc-ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence            899999999999999999976544322 22 23456899997320                           0       


Q ss_pred             ----------cCCHHHHHHHHHHcCCcEEEeccCCC------------CCHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 027894          135 ----------AVSTEDAKAFAERENTFFMETSALES------------MNVENAFTEVLTQIYHVVSRKALDIGGDPAAL  192 (217)
Q Consensus       135 ----------~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  192 (217)
                                -.......+|+.++++.+++.++...            .|+..+|..+..++-.-..-+.-+ ....|+.
T Consensus       160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmilk~gd-rinepvl  238 (418)
T KOG4273|consen  160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMILKNGD-RINEPVL  238 (418)
T ss_pred             ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccceecccc-ccCCccC
Confidence                      01224456788889999999998532            466666665554433322211111 1124577


Q ss_pred             CCCce
Q 027894          193 PKGQT  197 (217)
Q Consensus       193 ~~~~~  197 (217)
                      |||..
T Consensus       239 pqgee  243 (418)
T KOG4273|consen  239 PQGEE  243 (418)
T ss_pred             CCcce
Confidence            88844

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=3e-06  Score=70.40  Aligned_cols=117  Identities=19%  Similarity=0.188  Sum_probs=80.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCC-----C-----------CcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-----S-----------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ..-+|.+.-+-.+||||+-++.+...--..     .           ....+++.........+...++.++||||+-.|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            456789999999999999988654211000     0           011133333333333444688999999999888


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      .--....++-.|++++|++....-.-+....|.+.-.    .++|.|.++||+|.-.
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDRMG  170 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence            7777778899999999999877654455555655433    5799999999999743

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.26  E-value=1.8e-06  Score=66.54  Aligned_cols=58  Identities=26%  Similarity=0.242  Sum_probs=36.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC------CCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF------SLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      -.+++|++|+|||||+|+|.....      +......--++.+...+.+.+.   -.++||||..++
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~  229 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSL  229 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCcc
Confidence            358999999999999999987422      1112111113334445555322   278999996554

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.20  E-value=1.4e-05  Score=64.13  Aligned_cols=140  Identities=16%  Similarity=0.128  Sum_probs=71.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEE------------------EEEEEE---------CCeEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFA------------------TRSIRV---------EDKIVK   63 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~---------~~~~~~   63 (217)
                      -.++++|++|+||||++..|.......   ......+.+.+                  ......         ......
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            468899999999999999987642111   00000001110                  000000         012247


Q ss_pred             EEEEeCCCchhhhhh---hHhhh---cCCcEEEEEEeCCChh-hHHHHHHHHHHHhccC-CC-CCcEEEEEeCCCCCCcc
Q 027894           64 AQIWDTAGQERYRAI---TSAYY---RGAVGALLVYDVTRHV-TFENVERWLKELRGHT-DS-NIVIMLVGNKADLRHLC  134 (217)
Q Consensus        64 ~~l~Dt~G~~~~~~~---~~~~~---~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~-~~-~~p~iiv~nK~D~~~~~  134 (217)
                      +.++||+|.......   ....+   ....-.++|++++... ...++..-+....... .. ..+-=+|+||.|-..  
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~--  295 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS--  295 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence            899999995432211   11112   2234568899987643 3333322222221110 00 012356789999633  


Q ss_pred             cCCHHHHHHHHHHcCCcEEEecc
Q 027894          135 AVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                        ..-.+..+....+.|+.+++.
T Consensus       296 --~~G~~l~~~~~~~lPi~yvt~  316 (374)
T PRK14722        296 --NLGGVLDTVIRYKLPVHYVST  316 (374)
T ss_pred             --CccHHHHHHHHHCcCeEEEec
Confidence              445566777777887665553

>PRK13695 putative NTPase; Provisional

Probab=98.18  E-value=8.9e-05  Score=53.55  Aligned_cols=48  Identities=13%  Similarity=0.116  Sum_probs=31.4

Q ss_pred             CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          117 SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       117 ~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      .+.|++++.+|...       ......+....+..++++   +.+|-+++.+.+++.+
T Consensus       125 ~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~  172 (174)
T PRK13695        125 SEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL  172 (174)
T ss_pred             CCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence            56899999987532       123444555566777777   4567778888877754

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.18  E-value=2.6e-05  Score=56.25  Aligned_cols=83  Identities=17%  Similarity=0.026  Sum_probs=46.1

Q ss_pred             EEEEEEeCCCchhh----hhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERY----RAITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      ..+.++|++|...+    ......+.  ...+.+++|+|......  .+ .+...+....  + ..-+|.||.|...   
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~--~-~~~viltk~D~~~---  153 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL--G-ITGVILTKLDGDA---  153 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC--C-CCEEEEECCcCCC---
Confidence            46788999996322    11111222  34899999999865432  22 2333333222  2 3566789999743   


Q ss_pred             CCHHHHHHHHHHcCCcEEE
Q 027894          136 VSTEDAKAFAERENTFFME  154 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~  154 (217)
                       ........+...++|+..
T Consensus       154 -~~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         154 -RGGAALSIRAVTGKPIKF  171 (173)
T ss_pred             -CcchhhhhHHHHCcCeEe
Confidence             223334466666776543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.17  E-value=3.4e-05  Score=56.81  Aligned_cols=86  Identities=15%  Similarity=0.028  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCchhhhh----hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERYRA----ITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      .++.++||+|......    ....++  ...+-+++|++++....  .+..........   + +-=+++||.|...   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~~~~~~~---~-~~~lIlTKlDet~---  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQALAFYEAF---G-IDGLILTKLDETA---  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHHHHHHHS---S-TCEEEEESTTSSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHHHHhhcc---c-CceEEEEeecCCC---
Confidence            4689999999432211    111111  25678999999876542  333222222211   1 1245699999633   


Q ss_pred             CCHHHHHHHHHHcCCcEEEecc
Q 027894          136 VSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                       ..-.+..++...+.|+-.++.
T Consensus       155 -~~G~~l~~~~~~~~Pi~~it~  175 (196)
T PF00448_consen  155 -RLGALLSLAYESGLPISYITT  175 (196)
T ss_dssp             -TTHHHHHHHHHHTSEEEEEES
T ss_pred             -CcccceeHHHHhCCCeEEEEC
Confidence             345567777778888666553

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.15  E-value=4.5e-05  Score=63.62  Aligned_cols=135  Identities=16%  Similarity=0.164  Sum_probs=71.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC---C---CCcc-----------------cceeEEEEEEE------E-CCeEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL---E---SKST-----------------IGVEFATRSIR------V-EDKIV   62 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~---~---~~~~-----------------~~~~~~~~~~~------~-~~~~~   62 (217)
                      .-.|+|+|++|+||||++..|...-...   .   ...+                 .+..+....-.      + .....
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            4578999999999999998886531100   0   0000                 01111100000      0 01236


Q ss_pred             EEEEEeCCCchhhhhhhH---hhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC
Q 027894           63 KAQIWDTAGQERYRAITS---AYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS  137 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~~---~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~  137 (217)
                      ++.|+||+|.........   ..+  ......++|++...  +..++...+..+..    ..+.-+|+||.|...    .
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~----~  499 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG----R  499 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc----c
Confidence            789999999532221110   001  11234577777654  34444444444432    245678999999632    4


Q ss_pred             HHHHHHHHHHcCCcEEEecc
Q 027894          138 TEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ...+..+....+.++.+++.
T Consensus       500 lG~aLsv~~~~~LPI~yvt~  519 (559)
T PRK12727        500 FGSALSVVVDHQMPITWVTD  519 (559)
T ss_pred             hhHHHHHHHHhCCCEEEEeC
Confidence            45666777777888666654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.15  E-value=4.7e-06  Score=65.11  Aligned_cols=59  Identities=22%  Similarity=0.269  Sum_probs=37.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCC------cccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK------STIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      -.++++|++|+|||||||.|++........      ....++.....+...+.   ..++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            468999999999999999999865432211      11112233334444322   368999997654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=1.6e-05  Score=71.88  Aligned_cols=114  Identities=30%  Similarity=0.331  Sum_probs=63.3

Q ss_pred             EEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEE-EEEEEECCeEEEEEEEeCCCc--------hhhhhhhHhh----
Q 027894           17 VLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFA-TRSIRVEDKIVKAQIWDTAGQ--------ERYRAITSAY----   82 (217)
Q Consensus        17 ~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~----   82 (217)
                      +|+|++|+||||++..- +..|+... ..-.+..-. +..... .-.-.-.++||.|.        +.....|..+    
T Consensus       129 ~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL  206 (1188)
T COG3523         129 MVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL  206 (1188)
T ss_pred             EEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCc-ccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence            79999999999998643 22221111 000000000 111111 01123588999982        1233445444    


Q ss_pred             -----hcCCcEEEEEEeCCChhhH---------HHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           83 -----YRGAVGALLVYDVTRHVTF---------ENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        83 -----~~~~d~ii~v~d~~~~~s~---------~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                           .+..++||+.+|+++--+.         ..+..=+.++.....-..|+.+++||.|+..
T Consensus       207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                 2568999999999762211         1222234455555557899999999999864

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.13  E-value=2.9e-06  Score=67.17  Aligned_cols=66  Identities=21%  Similarity=0.383  Sum_probs=49.8

Q ss_pred             cccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894            3 AYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus         3 ~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      +|.+...-...+++.|+|.|++||||+||+|......+.. .+.|++.....+..+.   .+.|.|.||.
T Consensus       242 ny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  242 NYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence            4444445567899999999999999999999998875543 4455666666665554   4799999993

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.11  E-value=2.6e-05  Score=60.26  Aligned_cols=94  Identities=15%  Similarity=0.045  Sum_probs=69.2

Q ss_pred             hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEe
Q 027894           77 AITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMET  155 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (217)
                      .+.+.-+.+.|-+++|+.+.+|+ +...+.+++.....   .++..+|++||+|+.++.+....+........+.+++.+
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            33444455678888888888876 56667777776665   557778889999997644333345666777789999999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 027894          156 SALESMNVENAFTEVLTQ  173 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.++.++...+...
T Consensus       148 s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         148 SAKNGDGLEELAELLAGK  165 (301)
T ss_pred             cCcCcccHHHHHHHhcCC
Confidence            999999999988766443

>PRK00098 GTPase RsgA; Reviewed

Probab=98.10  E-value=6.9e-06  Score=64.50  Aligned_cols=57  Identities=25%  Similarity=0.247  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcc------cceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKST------IGVEFATRSIRVEDKIVKAQIWDTAGQER   74 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      .++++|++|+|||||+|.|.+........-.      .-++.....+...+.   ..++||||...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            5899999999999999999886543211100      001222333333332   37899999643

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.09  E-value=2e-05  Score=55.37  Aligned_cols=58  Identities=19%  Similarity=0.111  Sum_probs=36.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  129 (217)
                      .+.+.++||+|....   ...++..+|.++++..++-.+.+.-++.  ..+.      .--++++||+|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~------~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIME------IADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh------hcCEEEEeCCC
Confidence            367899999996422   2347788999999998874443322221  1111      12378899997

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.08  E-value=1.2e-05  Score=58.60  Aligned_cols=113  Identities=13%  Similarity=0.091  Sum_probs=60.5

Q ss_pred             EEEEEeCCCchhhh-------hhhHhhhc-CC-cEEEEEEeCCC-hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           63 KAQIWDTAGQERYR-------AITSAYYR-GA-VGALLVYDVTR-HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~-------~~~~~~~~-~~-d~ii~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      .+.++|+|||.+..       .+.++.-+ +. -++++++|..= .++...+...+..+.+...-++|.|=|++|+|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            57899999975431       11122111 11 23555555431 22223333333333332235789999999999853


Q ss_pred             cccCCHHHH-------------------------------HHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894          133 LCAVSTEDA-------------------------------KAFAEREN-TFFMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       133 ~~~~~~~~~-------------------------------~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                      ..  +.+++                               ..+...++ +.+++..+.+.+.++.++..|-..++-.
T Consensus       179 ~~--~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~  253 (273)
T KOG1534|consen  179 DK--NKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYG  253 (273)
T ss_pred             hh--hHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhc
Confidence            21  11111                               11112233 3488888888888888888776665533

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.06  E-value=0.00012  Score=58.97  Aligned_cols=134  Identities=16%  Similarity=0.147  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCC-----------C----------CcccceeEEEEEEE------E---C-CeEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------S----------KSTIGVEFATRSIR------V---E-DKIV   62 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~-----------~----------~~~~~~~~~~~~~~------~---~-~~~~   62 (217)
                      ..|+++|++|+||||++..|...-....           .          ....+..+....-.      +   . ....
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~  321 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  321 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence            5799999999999999998864211000           0          00011111110000      0   0 0125


Q ss_pred             EEEEEeCCCchhhh----hhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894           63 KAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV  136 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  136 (217)
                      .+.|+||+|.....    .-...++  ...+.+++|+|++-..  .++......+...    .+-=+|+||.|-..    
T Consensus       322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~----  391 (436)
T PRK11889        322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA----  391 (436)
T ss_pred             CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCC----
Confidence            78999999953221    1122222  2356788999875432  2333344444321    22356799999643    


Q ss_pred             CHHHHHHHHHHcCCcEEEecc
Q 027894          137 STEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ..-.+..++...+.|+.+++.
T Consensus       392 k~G~iLni~~~~~lPIsyit~  412 (436)
T PRK11889        392 SSGELLKIPAVSSAPIVLMTD  412 (436)
T ss_pred             CccHHHHHHHHHCcCEEEEeC
Confidence            344566667777888665553

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.99  E-value=0.00018  Score=57.87  Aligned_cols=134  Identities=19%  Similarity=0.210  Sum_probs=71.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc---ccceeEEEE-----------------EEEE----------CCeEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS---TIGVEFATR-----------------SIRV----------EDKIV   62 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~---~~~~~~~~~-----------------~~~~----------~~~~~   62 (217)
                      .=-|++||++||||||-+..|...-.......   ..+++.+..                 .+..          .-...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            44689999999999999888765433010001   111111100                 0000          01224


Q ss_pred             EEEEEeCCCchhhhhh----hHhhhcC--CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894           63 KAQIWDTAGQERYRAI----TSAYYRG--AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV  136 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~----~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  136 (217)
                      +++|+||.|...+...    ...++..  ..-+.+|++++..  .+++...+..+....   .. =+++||.|-.    -
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~---i~-~~I~TKlDET----~  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP---ID-GLIFTKLDET----T  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC---cc-eeEEEccccc----C
Confidence            7899999996443322    2333332  2345677777655  355666555554322   22 3468999953    3


Q ss_pred             CHHHHHHHHHHcCCcEEEec
Q 027894          137 STEDAKAFAERENTFFMETS  156 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~S  156 (217)
                      +.-..-.+..+.+.|+.+++
T Consensus       353 s~G~~~s~~~e~~~PV~YvT  372 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVT  372 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEe
Confidence            44555566666666654444

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.99  E-value=0.00022  Score=58.31  Aligned_cols=139  Identities=18%  Similarity=0.145  Sum_probs=73.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCc--------------------ccceeEEEEEEE-------ECCeEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKS--------------------TIGVEFATRSIR-------VEDKIV   62 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~--------------------~~~~~~~~~~~~-------~~~~~~   62 (217)
                      .-.|+++|++|+||||++..|.+.....   ....                    ..+.......-.       ..-...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            4589999999999999999886532100   0000                    001110000000       001123


Q ss_pred             EEEEEeCCCchhh----hhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894           63 KAQIWDTAGQERY----RAITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV  136 (217)
Q Consensus        63 ~~~l~Dt~G~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  136 (217)
                      .+.++||+|....    ......+.  ....-.++|+|++...  +.+..+...+...    -+-=+|+||.|-..    
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~~----~~~~~I~TKlDEt~----  340 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQGH----GIHGCIITKVDEAA----  340 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeeeCCC----
Confidence            6789999994332    11122221  2244578899987432  2333333333321    22356799999633    


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894          137 STEDAKAFAERENTFFMETSALESMNV  163 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (217)
                      ..-.+..++...+.|+.+++.  |.++
T Consensus       341 ~~G~~l~~~~~~~lPi~yvt~--Gq~V  365 (420)
T PRK14721        341 SLGIALDAVIRRKLVLHYVTN--GQKV  365 (420)
T ss_pred             CccHHHHHHHHhCCCEEEEEC--CCCc
Confidence            445567777778888766654  4444

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.99  E-value=2.9e-05  Score=56.32  Aligned_cols=79  Identities=18%  Similarity=0.103  Sum_probs=42.1

Q ss_pred             EEEEEEeCCCchhhhhh-----hHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERYRAI-----TSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~-----~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      ....++++.|.......     .....-..+.++.|+|+.+......+.. +..++....      ++++||+|+.+.. 
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~-  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE-  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh-
Confidence            56778888884333222     1111234688999999977544444433 334443322      7889999986533 


Q ss_pred             CCHHHHHHHHHH
Q 027894          136 VSTEDAKAFAER  147 (217)
Q Consensus       136 ~~~~~~~~~~~~  147 (217)
                      ...+...+..++
T Consensus       158 ~~i~~~~~~ir~  169 (178)
T PF02492_consen  158 QKIERVREMIRE  169 (178)
T ss_dssp             --HHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            122444444444

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.98  E-value=1.5e-05  Score=65.44  Aligned_cols=85  Identities=16%  Similarity=-0.008  Sum_probs=48.0

Q ss_pred             EEEEEeCCCchhhhhhh------HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894           63 KAQIWDTAGQERYRAIT------SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV  136 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  136 (217)
                      .+.++||+|........      ...+..+|.+++|+|++...  +.+ .....+....   ...-+|+||.|...    
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av-~~a~~F~~~l---~i~gvIlTKlD~~a----  246 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAK-NQAKAFHEAV---GIGGIIITKLDGTA----  246 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHH-HHHHHHHhcC---CCCEEEEecccCCC----
Confidence            78999999954322111      11234578899999987653  222 2222332111   12356789999632    


Q ss_pred             CHHHHHHHHHHcCCcEEEecc
Q 027894          137 STEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ..-.+..+....+.|+.+++.
T Consensus       247 ~~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        247 KGGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             cccHHHHHHHHHCcCEEEEec
Confidence            234455666666777655554

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.98  E-value=0.00017  Score=57.10  Aligned_cols=88  Identities=19%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhhh--------cCCcEEEEEEeCCChhhHHH-H-HHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           62 VKAQIWDTAGQERYRAITSAYY--------RGAVGALLVYDVTRHVTFEN-V-ERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~-~-~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      +...++++.|...-......+.        -..|+++-|+|+..-..... + +.+..++....      +|++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD------~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD------VIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc------EEEEecccCC
Confidence            4567888888433222222221        23578999999876544222 2 33344444322      8899999997


Q ss_pred             CcccCCHHHHHHHHHHc--CCcEEEecc
Q 027894          132 HLCAVSTEDAKAFAERE--NTFFMETSA  157 (217)
Q Consensus       132 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa  157 (217)
                      +...  .+..+....+.  .++++.++.
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence            6432  34445555544  366887776

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.97  E-value=3e-05  Score=55.62  Aligned_cols=134  Identities=20%  Similarity=0.251  Sum_probs=64.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeC-CCc---------------------
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT-AGQ---------------------   72 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~---------------------   72 (217)
                      ||++.|++|+|||||+++++........ +.  ..+....+.-++...-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~-~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGL-PV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCG-GE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCC-cc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            6899999999999999998765421111 11  1223333333444444555555 220                     


Q ss_pred             -hhhhhh----hHhhhcCCcEEEEEEeCCChhhHH-HHHHHHHHHhccCCCCCcEEEEEeCC-CCCCcccCCHHHHHHHH
Q 027894           73 -ERYRAI----TSAYYRGAVGALLVYDVTRHVTFE-NVERWLKELRGHTDSNIVIMLVGNKA-DLRHLCAVSTEDAKAFA  145 (217)
Q Consensus        73 -~~~~~~----~~~~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~-D~~~~~~~~~~~~~~~~  145 (217)
                       +.+...    ....+..+|  ++|+|=--+  ++ ....|...+......+.|++.++-+. +.        ....++.
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~  145 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK  145 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence             111111    111124555  667763211  11 01233334443333678888887766 32        1255556


Q ss_pred             HHcCCcEEEeccCCCCCH
Q 027894          146 ERENTFFMETSALESMNV  163 (217)
Q Consensus       146 ~~~~~~~~~~Sa~~~~~v  163 (217)
                      ...++.+++++..+...+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            667788888877654443

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.96  E-value=9.5e-05  Score=60.75  Aligned_cols=86  Identities=16%  Similarity=0.012  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCchhh----hhhhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERY----RAITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      +.+.++||+|....    ......+  .-..+.+++|+|.....   ++......+....  + ..-+|+||.|...   
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~---  254 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDA---  254 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence            57899999994321    1111111  12567789999986542   2222233333211  1 2356789999632   


Q ss_pred             CCHHHHHHHHHHcCCcEEEecc
Q 027894          136 VSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                       ..-.+.......+.|+.+++.
T Consensus       255 -rgG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        255 -RGGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             -cccHHHHHHHHHCcCEEEEeC
Confidence             223366666677888666554

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.93  E-value=0.00022  Score=57.28  Aligned_cols=135  Identities=18%  Similarity=0.158  Sum_probs=71.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC-----------CCC----------cccceeEEEEEEE--E-------C-CeE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL-----------ESK----------STIGVEFATRSIR--V-------E-DKI   61 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~-----------~~~----------~~~~~~~~~~~~~--~-------~-~~~   61 (217)
                      .--|+++|++|+||||++..+.......           ...          ...+..+....-.  +       . ...
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~  285 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC  285 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence            4568999999999999999876421100           000          0011111110000  0       0 013


Q ss_pred             EEEEEEeCCCchhhh----hhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERYR----AITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~----~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      ..+.++||+|.....    .....+..  ..+.+++|.++..  ...++...+..+..    -.+--+|+||.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~----l~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE----IPIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence            578999999963221    11222222  3466677776532  23334343333321    123356799999642   


Q ss_pred             CCHHHHHHHHHHcCCcEEEecc
Q 027894          136 VSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                       ..-.+..++...+.|+.+++.
T Consensus       357 -~~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEec
Confidence             445566777778888766664

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=2.4e-05  Score=62.28  Aligned_cols=155  Identities=20%  Similarity=0.162  Sum_probs=93.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc-------------------CCC------------CCCcccceeEEEEEEEECC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNE-------------------FSL------------ESKSTIGVEFATRSIRVED   59 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~-------------------~~~------------~~~~~~~~~~~~~~~~~~~   59 (217)
                      -..+++.++|+..+||||+-..++...                   ...            .....-+.......+..+.
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            346899999999999999876653310                   000            0011112223333333333


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHHH--HHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFENVE--RWLKELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~--~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                        .++++.|+||+..|-.....-..++|..++|+++...+   .|+.--  +-...+.... .-...|+++||+|-+..+
T Consensus       157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTVN  233 (501)
T ss_pred             --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCccC
Confidence              57899999999999888877888899999999875422   122111  1112222111 345678889999975322


Q ss_pred             cC--C----HHHHHHHHHHcC------CcEEEeccCCCCCHHHHHH
Q 027894          135 AV--S----TEDAKAFAEREN------TFFMETSALESMNVENAFT  168 (217)
Q Consensus       135 ~~--~----~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~  168 (217)
                      +.  .    .+....|....+      ..++++|..+|.++++...
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            11  1    123334444322      4599999999999888664

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.90  E-value=9.2e-05  Score=42.38  Aligned_cols=47  Identities=23%  Similarity=0.228  Sum_probs=31.5

Q ss_pred             hhcCCcEEEEEEeCCC--hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894           82 YYRGAVGALLVYDVTR--HVTFENVERWLKELRGHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  129 (217)
                      ..+-.++++|++|++.  +.++++-..++..+.... .+.|+++|.||+|
T Consensus        10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            3345788999999996  446666677778887766 6899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.87  E-value=0.00049  Score=54.54  Aligned_cols=95  Identities=9%  Similarity=0.066  Sum_probs=50.5

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhc--------CCcEEEEEEeCCChhhHH-HHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           62 VKAQIWDTAGQERYRAITSAYYR--------GAVGALLVYDVTRHVTFE-NVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      ....++++.|..........++.        ..+.++.|+|+.+..... .......++....      +|++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD------~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC------EEEEeccccCC
Confidence            45678899996544333333321        247899999987533211 1112223343222      78899999865


Q ss_pred             cccCCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHH
Q 027894          133 LCAVSTEDAKAFAERE--NTFFMETSALESMNVENAF  167 (217)
Q Consensus       133 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +    .+...+..+..  .++++.++ ........+|
T Consensus       165 ~----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        165 E----AEKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             H----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            3    23455555443  35566544 2233444444

>TIGR00959 ffh signal recognition particle protein

Probab=97.87  E-value=0.00017  Score=59.26  Aligned_cols=86  Identities=17%  Similarity=0.010  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCchhhh----hhhHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERYR----AITSA--YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~----~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      +.+.++||+|.....    .....  ..-..+.+++|+|+....   +.......+....   ...-+|+||.|...   
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~---  253 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDA---  253 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcc---
Confidence            568999999943221    11111  123578889999987543   3333333333211   12356799999632   


Q ss_pred             CCHHHHHHHHHHcCCcEEEecc
Q 027894          136 VSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                       ..-.+..++...++|+.+++.
T Consensus       254 -~~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 -RGGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             -cccHHHHHHHHHCcCEEEEeC
Confidence             223366667777888666654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.86  E-value=0.00048  Score=56.75  Aligned_cols=86  Identities=16%  Similarity=0.127  Sum_probs=49.5

Q ss_pred             EEEEEEeCCCchhhh----hhhHhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894           62 VKAQIWDTAGQERYR----AITSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                      ..+.++||+|.....    .....++.   ...-+++|++.+-.  ..++......+...   + +--+++||.|-..  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence            578999999953221    12222333   23466788887543  23344443444321   1 2357799999643  


Q ss_pred             cCCHHHHHHHHHHcCCcEEEecc
Q 027894          135 AVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                        ....+..+....+.|+.+++.
T Consensus       372 --~~G~i~~~~~~~~lPv~yit~  392 (424)
T PRK05703        372 --SLGSILSLLIESGLPISYLTN  392 (424)
T ss_pred             --cccHHHHHHHHHCCCEEEEeC
Confidence              334577777778888766654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.85  E-value=0.00053  Score=57.06  Aligned_cols=138  Identities=20%  Similarity=0.180  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCC-C--Cccc--------------------ceeEEEEEEE-------ECCeEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLE-S--KSTI--------------------GVEFATRSIR-------VEDKIVK   63 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~-~--~~~~--------------------~~~~~~~~~~-------~~~~~~~   63 (217)
                      --++++|++|+||||++..|........ .  ....                    +.......-.       ..-....
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            3589999999999999998875321110 0  0000                    0000000000       0001235


Q ss_pred             EEEEeCCCchhhhh---hhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC
Q 027894           64 AQIWDTAGQERYRA---ITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS  137 (217)
Q Consensus        64 ~~l~Dt~G~~~~~~---~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~  137 (217)
                      +.++||+|......   .....+..   ..-.++|+|.+...  ..+......+..    ....-+|+||.|-.    ..
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet----~~  406 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEA----AS  406 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCc----cc
Confidence            78999999432211   11112221   22367888886442  223333333322    22345678999953    24


Q ss_pred             HHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894          138 TEDAKAFAERENTFFMETSALESMNV  163 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (217)
                      .-.+..+....+.|+.+++.  |++|
T Consensus       407 ~G~~l~i~~~~~lPI~yvt~--GQ~V  430 (484)
T PRK06995        407 LGGALDVVIRYKLPLHYVSN--GQRV  430 (484)
T ss_pred             chHHHHHHHHHCCCeEEEec--CCCC
Confidence            45667777778888766654  4455

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.83  E-value=8.1e-05  Score=51.71  Aligned_cols=107  Identities=17%  Similarity=0.183  Sum_probs=61.3

Q ss_pred             EEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC
Q 027894           17 VLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        17 ~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                      ..-|..|+|||++--.+...-..... .+.-.+..   .......+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~-~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGK-RVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCC-cEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            34578899999996655432111000 00000000   0001111678999999853  233456788899999999875


Q ss_pred             ChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           97 RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        97 ~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                       ..++..+...+..+.... ...++.+|+|+.+..
T Consensus        78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence             444555555555554333 345678899999853

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.81  E-value=2.4e-05  Score=60.30  Aligned_cols=62  Identities=24%  Similarity=0.387  Sum_probs=40.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----CCcccceeEEEEE-EEECCeEEEEEEEeCCCc
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----SKSTIGVEFATRS-IRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~   72 (217)
                      ....++++|+|.||+|||||||++........    .....|.+..+.. +.+... -.+.++||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence            34679999999999999999998766433221    1223334443433 334333 23789999993

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=0.00049  Score=60.09  Aligned_cols=140  Identities=17%  Similarity=0.140  Sum_probs=72.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCC---CCc--------------------ccceeEEEEEEE-------ECCeEEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLE---SKS--------------------TIGVEFATRSIR-------VEDKIVKA   64 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~---~~~--------------------~~~~~~~~~~~~-------~~~~~~~~   64 (217)
                      -|+++|++|+||||++..|........   ...                    ..+..+....-.       -......+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            579999999999999998876431100   000                    001111000000       00112468


Q ss_pred             EEEeCCCchhh----hhhhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH
Q 027894           65 QIWDTAGQERY----RAITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST  138 (217)
Q Consensus        65 ~l~Dt~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~  138 (217)
                      .|+||+|....    ......+  ....+-+++|+|.+..  .+.+......+......+ +-=+|+||.|-..    ..
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~-i~glIlTKLDEt~----~~  339 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGED-VDGCIITKLDEAT----HL  339 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCC-CCEEEEeccCCCC----Cc
Confidence            99999993221    1111111  1234567899998753  223333333332211011 2356799999643    34


Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCCH
Q 027894          139 EDAKAFAERENTFFMETSALESMNV  163 (217)
Q Consensus       139 ~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (217)
                      -.+..+....+.|+.+++.  |++|
T Consensus       340 G~iL~i~~~~~lPI~yit~--GQ~V  362 (767)
T PRK14723        340 GPALDTVIRHRLPVHYVST--GQKV  362 (767)
T ss_pred             cHHHHHHHHHCCCeEEEec--CCCC
Confidence            5566677777888766654  4555

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=0.00093  Score=54.27  Aligned_cols=139  Identities=13%  Similarity=0.090  Sum_probs=74.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC-----CC--------------------CcccceeEEEEEEE-------ECCe
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL-----ES--------------------KSTIGVEFATRSIR-------VEDK   60 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~-----~~--------------------~~~~~~~~~~~~~~-------~~~~   60 (217)
                      .-.|+++|++|+||||.+..|...-...     ..                    ....+..+......       -...
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            3578999999999999998876421100     00                    00011111111000       0012


Q ss_pred             EEEEEEEeCCCchhhh----hhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894           61 IVKAQIWDTAGQERYR----AITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~----~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  133 (217)
                      ...+.++||+|.....    .-...++..   ..-.++|+|++...  .++...+..+...    .+-=+++||.|-.. 
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~-  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT-  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence            3578999999953221    111222222   22578999998763  3344444444321    13356799999633 


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894          134 CAVSTEDAKAFAERENTFFMETSALESMNV  163 (217)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (217)
                         ..-.+..++...+.|+..++.  |.++
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit~--Gq~v  351 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVTD--GQIV  351 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEeC--CCCC
Confidence               445566667777888665553  4444

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.76  E-value=0.00028  Score=57.49  Aligned_cols=134  Identities=19%  Similarity=0.220  Sum_probs=70.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc-CCCCC---------------------CcccceeEEEEE-E-----EECCeEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE-FSLES---------------------KSTIGVEFATRS-I-----RVEDKIVKAQ   65 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~-~~~~~---------------------~~~~~~~~~~~~-~-----~~~~~~~~~~   65 (217)
                      .-|+++|++||||||++..|.... .....                     ....+....... .     .......++.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999886522 10000                     001111111100 0     0011235789


Q ss_pred             EEeCCCchhh----hhhhHhhhc-----CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894           66 IWDTAGQERY----RAITSAYYR-----GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV  136 (217)
Q Consensus        66 l~Dt~G~~~~----~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  136 (217)
                      ++||+|....    ...+..++.     ...-.++|+|++...  +++......+...    -+-=+|+||.|-..    
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~----  373 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEAD----  373 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCC----
Confidence            9999995321    111222222     234578899987654  2233333333221    22356799999632    


Q ss_pred             CHHHHHHHHHHcCCcEEEecc
Q 027894          137 STEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ..-.+..++...+.|+.+++.
T Consensus       374 ~~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        374 FLGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             CccHHHHHHHHHCCCEEEEec
Confidence            334466667777888665554

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.76  E-value=0.00027  Score=46.34  Aligned_cols=82  Identities=17%  Similarity=0.165  Sum_probs=49.9

Q ss_pred             EEEEc-CCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           16 VVLIG-DSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        16 I~vvG-~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      |++.| ..|+||||+...+...-... ..+       ...+..+.. +.+.++|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~-~~~-------vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARR-GKR-------VLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhC-CCc-------EEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56777 56899999987765433211 101       111212211 668999999864332  2356777999999987


Q ss_pred             CCChhhHHHHHHHHH
Q 027894           95 VTRHVTFENVERWLK  109 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~  109 (217)
                      . +..++..+..+++
T Consensus        71 ~-~~~s~~~~~~~~~   84 (104)
T cd02042          71 P-SPLDLDGLEKLLE   84 (104)
T ss_pred             C-CHHHHHHHHHHHH
Confidence            6 4555666666554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.71  E-value=0.00054  Score=52.91  Aligned_cols=134  Identities=17%  Similarity=0.143  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCC---------------------CCcccceeEEEEEEE---------E-CCeEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLE---------------------SKSTIGVEFATRSIR---------V-EDKIV   62 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~---------~-~~~~~   62 (217)
                      -+|+++|++|+||||++..+........                     +....++.+....-.         . ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            5899999999999999987755311000                     000111111110000         0 01136


Q ss_pred             EEEEEeCCCchhhh----hhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894           63 KAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV  136 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~  136 (217)
                      .+.++||+|.....    ..+..++  ...+-+++|+|++...  +++..+...+..    -.+--+++||.|-..    
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~----  225 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA----  225 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC----
Confidence            78999999954211    1111222  2456789999986432  223334344432    122356799999643    


Q ss_pred             CHHHHHHHHHHcCCcEEEecc
Q 027894          137 STEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ..-.+..++...+.|+..++.
T Consensus       226 ~~G~~l~~~~~~~~Pi~~it~  246 (270)
T PRK06731        226 SSGELLKIPAVSSAPIVLMTD  246 (270)
T ss_pred             CccHHHHHHHHHCcCEEEEeC
Confidence            334556666677887665553

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.71  E-value=0.0004  Score=44.48  Aligned_cols=70  Identities=16%  Similarity=0.150  Sum_probs=45.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh-hHhhhcCCcEEEEEEe
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYD   94 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d   94 (217)
                      |++.|..|+||||+...+...-..... .       .  ..++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~-~-------v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK-R-------V--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC-e-------E--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999887665422111 1       1  1112    5899999986432221 2445667898999988


Q ss_pred             CCChh
Q 027894           95 VTRHV   99 (217)
Q Consensus        95 ~~~~~   99 (217)
                      .....
T Consensus        68 ~~~~~   72 (99)
T cd01983          68 PEALA   72 (99)
T ss_pred             Cchhh
Confidence            76543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.65  E-value=0.00058  Score=47.08  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=22.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      .-.+++.|++|+|||+|++.+.....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            34689999999999999999987654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.65  E-value=0.0047  Score=43.95  Aligned_cols=146  Identities=10%  Similarity=0.079  Sum_probs=100.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +..+...|++||..+.++..|..++......        ....+....  .       .-.|..  ...    .=...|.
T Consensus        11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~l~Vh~a~--s-------LPLp~e--~~~----lRprIDl   67 (176)
T PF11111_consen   11 PELNTATILLVGTEEALLQQLAEAMLEEDKE--------FKLKVHLAK--S-------LPLPSE--NNN----LRPRIDL   67 (176)
T ss_pred             CCcceeEEEEecccHHHHHHHHHHHHhhccc--------eeEEEEEec--c-------CCCccc--ccC----CCceeEE
Confidence            4556889999999999999999999863321        111111110  0       001111  111    1245899


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      |+|++|.....|++.++.-+..+....-.++-++ +.+-....+...+...+..+++..+++|++.+.-...++...+-+
T Consensus        68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCf-l~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq  146 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCF-LATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ  146 (176)
T ss_pred             EEEEEecCCcccHHHHHHHHhhCChhhhccceEE-EEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence            9999999999999999888887765553444444 455555555567889999999999999999999988888777777


Q ss_pred             HHHHHHHHHh
Q 027894          169 EVLTQIYHVV  178 (217)
Q Consensus       169 ~i~~~~~~~~  178 (217)
                      .+++.+...-
T Consensus       147 RLL~~lqi~a  156 (176)
T PF11111_consen  147 RLLRMLQICA  156 (176)
T ss_pred             HHHHHHHHHc
Confidence            7777666443

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.62  E-value=0.00036  Score=46.04  Aligned_cols=99  Identities=20%  Similarity=0.151  Sum_probs=57.5

Q ss_pred             cCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh
Q 027894           20 GDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV   99 (217)
Q Consensus        20 G~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~   99 (217)
                      +..|+||||+...|...-.......+.-.+     ...... -.+.++|+|+....  .....+..+|.++++++. +..
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d-----~d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~-~~~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVD-----LDLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ-DLP   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEE-----CCCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC-ChH
Confidence            456799999877664432211010111010     000000 16899999986433  234467889999988875 455


Q ss_pred             hHHHHHHHHHHHhccCCC-CCcEEEEEeC
Q 027894          100 TFENVERWLKELRGHTDS-NIVIMLVGNK  127 (217)
Q Consensus       100 s~~~~~~~~~~l~~~~~~-~~p~iiv~nK  127 (217)
                      ++..+..++..+...... ...+.+|+|+
T Consensus        78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            567777777777665433 4566777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.62  E-value=0.0008  Score=48.72  Aligned_cols=86  Identities=20%  Similarity=0.157  Sum_probs=46.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEE--EEEeCC-CchhhhhhhHhhhcCCcEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA--QIWDTA-GQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~Dt~-G~~~~~~~~~~~~~~~d~ii   90 (217)
                      =.++++|++|+|||||++.+.+-..+..     |.      +.+++..+-+  +-.+.+ |+.+...+...++.+.++++
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll   94 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPNG-----DN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL   94 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCC-----cE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            3689999999999999999887543211     11      1112211111  111133 34444566677777776444


Q ss_pred             EEEeCC----ChhhHHHHHHHHHHHh
Q 027894           91 LVYDVT----RHVTFENVERWLKELR  112 (217)
Q Consensus        91 ~v~d~~----~~~s~~~~~~~~~~l~  112 (217)
                      +  |-.    |+.+.+.+..++..+.
T Consensus        95 L--DEPts~LD~~~~~~l~~~l~~~~  118 (177)
T cd03222          95 F--DEPSAYLDIEQRLNAARAIRRLS  118 (177)
T ss_pred             E--ECCcccCCHHHHHHHHHHHHHHH
Confidence            3  432    4444455555555543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.0003  Score=57.80  Aligned_cols=131  Identities=21%  Similarity=0.240  Sum_probs=81.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc------------CCCCCC--cccceeEEEEEEEE----------------CCe
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNE------------FSLESK--STIGVEFATRSIRV----------------EDK   60 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~------------~~~~~~--~~~~~~~~~~~~~~----------------~~~   60 (217)
                      .+.-++.++.+...|||||-..|....            |.....  ..-+++.....+..                ++.
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            345578899999999999999886531            111000  00112222222211                234


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC-CcccCCHH
Q 027894           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR-HLCAVSTE  139 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~-~~~~~~~~  139 (217)
                      .+.+.++|.||+-.|.+-..+.++-.|+++.|+|..+.--.+.--.+.+.+..    .+.-++++||.|.. -+.+...+
T Consensus        97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~E  172 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQE  172 (842)
T ss_pred             ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHH
Confidence            57889999999999998888899999999999998775433332233344432    23346789999974 23455555


Q ss_pred             HHHHHH
Q 027894          140 DAKAFA  145 (217)
Q Consensus       140 ~~~~~~  145 (217)
                      ++-+..
T Consensus       173 eLyqtf  178 (842)
T KOG0469|consen  173 ELYQTF  178 (842)
T ss_pred             HHHHHH
Confidence            544433

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.60  E-value=0.00017  Score=54.70  Aligned_cols=22  Identities=41%  Similarity=0.534  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -++++|+.|+|||||++.+++-
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLGl   53 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILGL   53 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999884

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.57  E-value=0.00058  Score=46.53  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=19.8

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      |++.|++|+|||++++.+....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998754

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.55  E-value=0.0021  Score=51.53  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .++.|.-|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578899999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.54  E-value=7.7e-05  Score=50.33  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999774

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.51  E-value=8.6e-05  Score=53.27  Aligned_cols=23  Identities=39%  Similarity=0.673  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ||+|+|++|||||||.+.|....
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999987653

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.00039  Score=55.34  Aligned_cols=92  Identities=15%  Similarity=0.143  Sum_probs=51.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC---------------------cccceeEEEEEEEE-------------C
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESK---------------------STIGVEFATRSIRV-------------E   58 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~   58 (217)
                      .--|+++|-.|+||||.+-.|........+.                     .-.++.++......             .
T Consensus       101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK  180 (483)
T KOG0780|consen  101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK  180 (483)
T ss_pred             CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence            3457999999999999988764421111100                     00112222211111             1


Q ss_pred             CeEEEEEEEeCCCchhhh-hhh-----HhhhcCCcEEEEEEeCCChhhHHHH
Q 027894           59 DKIVKAQIWDTAGQERYR-AIT-----SAYYRGAVGALLVYDVTRHVTFENV  104 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~-~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~  104 (217)
                      ...+.++++||+|..... ++-     ..-.-..|-+|+|.|++-..+-+..
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q  232 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ  232 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence            234689999999942211 111     1112357899999999987654443

>PRK07261 topology modulation protein; Provisional

Probab=97.49  E-value=9.5e-05  Score=53.28  Aligned_cols=22  Identities=41%  Similarity=0.739  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +|+|+|++|||||||.+.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998654

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.48  E-value=0.00092  Score=51.95  Aligned_cols=107  Identities=17%  Similarity=0.233  Sum_probs=62.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------------
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------------   72 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------   72 (217)
                      .......++++|++|.|||+++++|....... .... .            ..+.+..+.+|..                
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            34445679999999999999999999866322 2111 0            1123445555431                


Q ss_pred             --------hhhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCC
Q 027894           73 --------ERYRAITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRGHTD-SNIVIMLVGNKAD  129 (217)
Q Consensus        73 --------~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D  129 (217)
                              ..........++...+=++++|--.   ..+......+++.+....+ -++|+|.||+.--
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A  191 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA  191 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence                    1112223455677777788888532   2233334445555554443 5799999987643

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.47  E-value=9.6e-05  Score=55.76  Aligned_cols=35  Identities=23%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             ccccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894            2 AAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus         2 ~~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +++...+--...+|++|+|++|||||+|+..++..
T Consensus         2 ~~F~~~~l~~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen    2 KRFDRNSLLKDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCChhHhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            44555555667799999999999999999998764

This is thought to be an ATPase involved in viral DNA packaging [].

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.45  E-value=0.00018  Score=42.19  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      ..+|.|+.|+|||||+.++.---+
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHc
Confidence            389999999999999998765443

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.41  E-value=0.00012  Score=50.91  Aligned_cols=21  Identities=38%  Similarity=0.741  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+++|++|||||||++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999753

...

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.41  E-value=0.0021  Score=46.54  Aligned_cols=85  Identities=26%  Similarity=0.232  Sum_probs=59.8

Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE  139 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~  139 (217)
                      ..+.+.++|||+....  .....+..+|.+++++..+. .+...+..++..+...   +.|+.+|+|+.|...   ....
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence            3468899999975322  23445688999999999874 4566676766666543   467889999999643   2345


Q ss_pred             HHHHHHHHcCCcEE
Q 027894          140 DAKAFAERENTFFM  153 (217)
Q Consensus       140 ~~~~~~~~~~~~~~  153 (217)
                      +..++++..+++++
T Consensus       162 ~~~~~~~~~~~~vl  175 (179)
T cd03110         162 EIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHcCCCeE
Confidence            67777888888765

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.40  E-value=0.00014  Score=52.57  Aligned_cols=23  Identities=26%  Similarity=0.728  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .||+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999887

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.40  E-value=0.00094  Score=45.80  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -|++.|+.|+|||||++.+....
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.35  E-value=0.00021  Score=43.19  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      |++.|++|+||||+.+.|...-
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987753

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.35  E-value=0.0023  Score=53.32  Aligned_cols=85  Identities=9%  Similarity=0.049  Sum_probs=41.8

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      .+|+|=|+-+..-.++.+.+...+..+.. ...|+|++++-+-..........-..++....++..+....-...-+...
T Consensus       196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~  275 (634)
T KOG1970|consen  196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKF  275 (634)
T ss_pred             eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHH
Confidence            35778787664444333333333332222 56888888877665322212222233333445555555555444444444


Q ss_pred             HHHHHH
Q 027894          167 FTEVLT  172 (217)
Q Consensus       167 ~~~i~~  172 (217)
                      +..|+.
T Consensus       276 L~ric~  281 (634)
T KOG1970|consen  276 LKRICR  281 (634)
T ss_pred             HHHHHH
Confidence            444443

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.31  E-value=0.0082  Score=43.21  Aligned_cols=84  Identities=13%  Similarity=0.014  Sum_probs=51.6

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHH
Q 027894           63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAK  142 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  142 (217)
                      .+.++|+|+....  .....+..+|.++++++.+. .++..+..++..+...  ......+|+|+.+....  ...+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence            6899999985433  23345678999999998764 3455566666666542  22346788999986431  1222234


Q ss_pred             HHHHHcCCcEE
Q 027894          143 AFAERENTFFM  153 (217)
Q Consensus       143 ~~~~~~~~~~~  153 (217)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44455666654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.31  E-value=0.00014  Score=51.93  Aligned_cols=22  Identities=23%  Similarity=0.597  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.31  E-value=0.0034  Score=43.83  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            56899999999999999998864

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.29  E-value=0.00047  Score=51.23  Aligned_cols=28  Identities=36%  Similarity=0.488  Sum_probs=22.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .....-|+|+|++|||||||++.|....
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            3345668899999999999999997643

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.00029  Score=52.95  Aligned_cols=23  Identities=43%  Similarity=0.577  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      |+++|++|||||||++-+.+-..
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999998877543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.26  E-value=0.0003  Score=52.50  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      -|+++|++|||||||++-+-+-..
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            379999999999999998866443

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.26  E-value=0.00025  Score=48.88  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57999999999999999888754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.25  E-value=0.00033  Score=51.59  Aligned_cols=24  Identities=50%  Similarity=0.582  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      .++++|++|||||||++.+.+-+.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            579999999999999998876543

>smart00072 GuKc Guanylate kinase homologues

Probab=97.23  E-value=0.0023  Score=46.60  Aligned_cols=23  Identities=43%  Similarity=0.689  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      =|+++|++||||+||++.|....
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            37999999999999999998874

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK10646 ADP-binding protein; Provisional

Probab=97.23  E-value=0.0031  Score=44.28  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -|++-|.-|+|||||++.+...-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            38899999999999999997754

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.22  E-value=0.0003  Score=48.89  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .|+|+|+.|+|||||++.|++.-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998764

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.22  E-value=0.0033  Score=47.04  Aligned_cols=102  Identities=11%  Similarity=0.055  Sum_probs=64.0

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN--VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE  139 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~  139 (217)
                      +.+.|+|+.|.....  ....+..+|.+|+=.-.+.-+.-+.  .-.|+..+.....+++|.-|+.|+..... ......
T Consensus        84 ~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~  160 (231)
T PF07015_consen   84 FDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQR  160 (231)
T ss_pred             CCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHH
Confidence            578999999864433  3335567998888666664332222  23344444444457899999999987431 111112


Q ss_pred             HHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894          140 DAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus       140 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      ...++..  ++|++.+.......+.++|.
T Consensus       161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  161 IISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHh--cCCccccccccHHHHHHHHH
Confidence            2233333  58999999988888777776

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.22  E-value=0.0013  Score=47.30  Aligned_cols=81  Identities=20%  Similarity=0.170  Sum_probs=44.6

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC-----CcccCCHHHHHHHHHHcCCcEE--EeccCCC
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR-----HLCAVSTEDAKAFAERENTFFM--ETSALES  160 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~--~~Sa~~~  160 (217)
                      +-+-|.-.+..+..+..+.++..+-.           ..|.|.-     ...+....-++.++.+..+.+|  ++||.+.
T Consensus       117 aPvhVLg~~k~ea~e~Ae~~L~kVGi-----------~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDP  185 (256)
T COG4598         117 APVHVLGVSKAEAIERAEKYLAKVGI-----------AEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP  185 (256)
T ss_pred             cchHhhcCCHHHHHHHHHHHHHHhCc-----------hhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCH
Confidence            34445555555555555555555432           3344421     1111122233344444444444  5899999


Q ss_pred             CCHHHHHHHHHHHHHHHhh
Q 027894          161 MNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~~~~~  179 (217)
                      +-+.|++.-|.+...+-+.
T Consensus       186 ElVgEVLkv~~~LAeEgrT  204 (256)
T COG4598         186 ELVGEVLKVMQDLAEEGRT  204 (256)
T ss_pred             HHHHHHHHHHHHHHHhCCe
Confidence            9999999888877765543

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.21  E-value=0.00011  Score=58.43  Aligned_cols=55  Identities=20%  Similarity=0.275  Sum_probs=0.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .+-|.++|.|++||||+||.|-...+.... +..|-+..-..+..-.   ++.++|+||
T Consensus       307 qISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmk---rIfLIDcPG  361 (572)
T KOG2423|consen  307 QISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMK---RIFLIDCPG  361 (572)
T ss_pred             ceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHh---ceeEecCCC

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.21  E-value=0.00073  Score=50.31  Aligned_cols=68  Identities=18%  Similarity=0.098  Sum_probs=35.8

Q ss_pred             EEEEEEeCCCchhhh----hh--hHhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894           62 VKAQIWDTAGQERYR----AI--TSAYYRGAVGALLVYDVT------RHVTFENVERWLKELRGHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~----~~--~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  129 (217)
                      -.+.++|+|||-++.    .+  ....+..-+.-+.++.+.      +|..|-.  .++..+.....-+.|-|=|+.|+|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D  174 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD  174 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence            467899999964321    11  122233355444444443      4555433  222222222224677788899999


Q ss_pred             CC
Q 027894          130 LR  131 (217)
Q Consensus       130 ~~  131 (217)
                      +.
T Consensus       175 l~  176 (290)
T KOG1533|consen  175 LL  176 (290)
T ss_pred             HH
Confidence            84

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.20  E-value=0.0025  Score=53.85  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      =+++.||+|+||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999988765

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.18  E-value=0.0002  Score=51.38  Aligned_cols=24  Identities=42%  Similarity=0.674  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .-+++.|++|+|||||++.|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999998876

>PRK06217 hypothetical protein; Validated

Probab=97.16  E-value=0.00038  Score=50.73  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .+|+|+|.+|||||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.16  E-value=0.00034  Score=47.46  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      |+|.|.+||||||+.+.|....
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999987753

...

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.15  E-value=0.00038  Score=48.21  Aligned_cols=21  Identities=57%  Similarity=0.858  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+++|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.15  E-value=0.0026  Score=46.92  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      |+|+|++||||||+++.++...
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887754

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.14  E-value=0.00056  Score=55.13  Aligned_cols=25  Identities=44%  Similarity=0.674  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      -+++++|.+|+|||||++.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4789999999999999999987543

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.13  E-value=0.0011  Score=44.80  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -|++-|+-|+|||||++.+...-
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999987754

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.13  E-value=0.00046  Score=47.19  Aligned_cols=27  Identities=22%  Similarity=0.377  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL   40 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~   40 (217)
                      -.++++|++|+||||+++.+.......
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            468999999999999999998876544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.10  E-value=0.013  Score=43.80  Aligned_cols=62  Identities=26%  Similarity=0.209  Sum_probs=37.0

Q ss_pred             EEEEEeC-CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCC
Q 027894           63 KAQIWDT-AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        63 ~~~l~Dt-~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~  130 (217)
                      .+.++|| +|.+   ++-+...+.+|.++.|+|.+-. |+...++........  .-.++.+|+||.|-
T Consensus       135 e~VivDtEAGiE---HfgRg~~~~vD~vivVvDpS~~-sl~taeri~~L~~el--g~k~i~~V~NKv~e  197 (255)
T COG3640         135 EVVIVDTEAGIE---HFGRGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL--GIKRIFVVLNKVDE  197 (255)
T ss_pred             cEEEEecccchh---hhccccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh--CCceEEEEEeeccc
Confidence            3455555 2333   2334456789999999998654 354444433322221  13779999999994

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.10  E-value=0.00047  Score=50.36  Aligned_cols=23  Identities=39%  Similarity=0.660  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .|+|+|++|||||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999996653

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.08  E-value=0.00032  Score=60.62  Aligned_cols=122  Identities=15%  Similarity=0.179  Sum_probs=73.1

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccce---------------------------------------
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV---------------------------------------   48 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~---------------------------------------   48 (217)
                      ...-....|+++|..++||||.++.+.+..+.+....-.+-                                       
T Consensus        24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI  103 (657)
T KOG0446|consen   24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI  103 (657)
T ss_pred             CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence            34456789999999999999999999996654432111000                                       


Q ss_pred             --------------eEEEEEEEE-CCeEEEEEEEeCCC-------------chhhhhhhHhhhcCCcEEEEEEeCCChhh
Q 027894           49 --------------EFATRSIRV-EDKIVKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYDVTRHVT  100 (217)
Q Consensus        49 --------------~~~~~~~~~-~~~~~~~~l~Dt~G-------------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s  100 (217)
                                    ......+.+ ......++++|+||             ......+...|+.....+|+.+...+.+ 
T Consensus       104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d-  182 (657)
T KOG0446|consen  104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD-  182 (657)
T ss_pred             HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh-
Confidence                          000001111 11124678899999             1345667778888888888888776522 


Q ss_pred             HHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894          101 FENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus       101 ~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      +. ...++....+....+...+.|++|.|+.
T Consensus       183 ~a-ts~alkiarevDp~g~RTigvitK~Dlm  212 (657)
T KOG0446|consen  183 IA-TSPALVVAREVDPGGSRTLEVITKFDFM  212 (657)
T ss_pred             hh-cCHHHHHHHhhCCCccchhHHhhhHHhh
Confidence            11 1233444444444556667777777763

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.07  E-value=0.00051  Score=45.16  Aligned_cols=20  Identities=40%  Similarity=0.737  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 027894           15 KVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~   34 (217)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            47999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.06  E-value=0.00051  Score=49.76  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .|+|+|++|||||||++.|....
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47999999999999999987753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.05  E-value=0.0036  Score=43.45  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      -|++-|+-|+|||||.+.+...--
T Consensus        27 Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          27 VVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             EEEEEcCCcCChHHHHHHHHHHcC
Confidence            478999999999999999877654

>PRK04195 replication factor C large subunit; Provisional

Probab=97.05  E-value=0.019  Score=48.42  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .-.+++.|++|+||||+++.+.+..
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3568999999999999999997753

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.05  E-value=0.011  Score=46.28  Aligned_cols=20  Identities=40%  Similarity=0.514  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 027894           15 KVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~   34 (217)
                      .|++.|.+||||||+++.|-
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            68999999999999999984

>PRK14530 adenylate kinase; Provisional

Probab=97.05  E-value=0.00055  Score=51.21  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .+|+|+|++||||||+.+.|...
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999988653

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.03  E-value=0.00061  Score=49.28  Aligned_cols=21  Identities=43%  Similarity=0.468  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~   34 (217)
                      -.++++|++|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            468999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.02  E-value=0.00082  Score=50.02  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ....|+|.|++|||||||.+.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999998775

>PRK03839 putative kinase; Provisional

Probab=97.02  E-value=0.00062  Score=49.38  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +|+++|.+||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998775

>TIGR00235 udk uridine kinase

Probab=97.02  E-value=0.00086  Score=49.86  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ...-|+++|++|||||||++.+.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999874

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.01  E-value=0.0025  Score=51.72  Aligned_cols=63  Identities=22%  Similarity=0.088  Sum_probs=36.4

Q ss_pred             EEEEEEeCCCchhhhhhh------HhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           62 VKAQIWDTAGQERYRAIT------SAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      +.+.++||+|.-......      ..-.-+.|=+++|+|+.-...-... +.+...+.      + .=+|+||.|-.
T Consensus       183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~------i-tGvIlTKlDGd  252 (451)
T COG0541         183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG------I-TGVILTKLDGD  252 (451)
T ss_pred             CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC------C-ceEEEEcccCC
Confidence            478999999943222111      1123467889999999876543322 33333321      1 23568888863

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.01  E-value=0.00065  Score=49.64  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -.++++|++|||||||++.+++..
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999988743

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.01  E-value=0.00059  Score=49.44  Aligned_cols=23  Identities=39%  Similarity=0.667  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -|+++|++|||||||++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47999999999999999998853

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.00  E-value=0.0006  Score=50.28  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      |++.|++|||||||++.|.+.-
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987753

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.99  E-value=0.0006  Score=52.00  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ++++|+.|||||||++.+.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            589999999999999999774

>PRK13949 shikimate kinase; Provisional

Probab=96.99  E-value=0.00072  Score=48.61  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +|+++|++||||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988764

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.98  E-value=0.00089  Score=48.90  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .=|+|+|++|||||||+++|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            348999999999999999998753

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.97  E-value=0.00092  Score=48.04  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ..-+.|+|.+|||||||+++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHH
Confidence            3468999999999999999998754

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.94  E-value=0.0008  Score=48.36  Aligned_cols=25  Identities=40%  Similarity=0.497  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      =.++++|++|+|||||+|-+.+=..
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccC
Confidence            3689999999999999998876443

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.94  E-value=0.00071  Score=50.49  Aligned_cols=21  Identities=48%  Similarity=0.719  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            489999999999999999877

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.93  E-value=0.00073  Score=49.21  Aligned_cols=22  Identities=18%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .-|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.93  E-value=0.00071  Score=50.80  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      |++.|++|||||||++.|.+.-
T Consensus         2 igI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHH
Confidence            6899999999999999887643

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.0042  Score=51.85  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      =||+++|.+||||||+++.|+.
T Consensus       379 ekVaIvG~nGsGKSTilr~Llr  400 (591)
T KOG0057|consen  379 EKVAIVGSNGSGKSTILRLLLR  400 (591)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998865

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.91  E-value=0.00083  Score=50.29  Aligned_cols=23  Identities=39%  Similarity=0.557  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57999999999999999998854

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.91  E-value=0.00085  Score=46.43  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .|+++|++|+|||+|++.+....
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999887654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=96.91  E-value=0.0076  Score=49.68  Aligned_cols=62  Identities=24%  Similarity=0.330  Sum_probs=37.5

Q ss_pred             EEeCC-CchhhhhhhHhhhcCCcEEEEEEeC-CChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894           66 IWDTA-GQERYRAITSAYYRGAVGALLVYDV-TRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        66 l~Dt~-G~~~~~~~~~~~~~~~d~ii~v~d~-~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  129 (217)
                      +.|.+ |..+.-.....++++++.+|  +|- +..=+..+++.++..+......+.-+|++-.|.+
T Consensus       138 V~dLsVG~qQRVEIlKaLyr~a~iLI--LDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~  201 (501)
T COG3845         138 VADLSVGEQQRVEILKALYRGARLLI--LDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK  201 (501)
T ss_pred             eecCCcchhHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            44433 33444566777788888444  342 2223455666777666666657788888877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-78
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-76
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		6e-76
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-75
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		4e-75
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-74
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		6e-74
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-69
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-67
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-64
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-62
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-61
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-46
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-45
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-45
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		5e-45
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		4e-44
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		4e-44
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-42
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-42
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-42
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		5e-42
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		9e-42
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-41
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-41
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-41
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-41
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-41
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		7e-41
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		7e-41
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-40
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-40
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-40
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-40
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-39
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-39
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		4e-39
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		8e-39
2efc_B	181	Ara7-GdpATVPS9A Length = 181		9e-39
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-38
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-38
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		8e-38
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-37
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-37
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-37
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-37
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-37
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-37
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		4e-37
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-37
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		6e-37
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-36
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-36
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		5e-36
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		6e-36
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-35
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-35
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-35
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-35
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-35
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-35
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-35
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-35
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		5e-35
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		8e-35
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-34
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		8e-34
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		5e-33
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		9e-33
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-32
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		6e-32
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		9e-32
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-31
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-31
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-31
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-31
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-31
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		4e-31
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-31
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		5e-31
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		6e-31
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-30
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-30
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-30
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-30
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		7e-30
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		7e-30
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		8e-30
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-29
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-29
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-29
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-29
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		3e-29
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		5e-29
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		6e-29
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-28
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		6e-28
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-27
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-27
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-26
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		6e-23
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		9e-21
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-20
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-20
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-20
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-20
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-20
1byu_A	216	Canine Gdp-Ran Length = 216		3e-20
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-20
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-20
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		3e-20
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		4e-20
2bku_A	177	Kap95p:rangtp Complex Length = 177		4e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		4e-20
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		5e-20
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-19
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-19
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-19
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		3e-19
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-19
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		3e-19
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		5e-19
3icq_B	171	Karyopherin Nuclear State Length = 171		5e-19
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		8e-18
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		8e-18
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-16
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-16
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-16
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-16
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-16
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		4e-16
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		4e-16
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		5e-16
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-16
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		6e-16
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		8e-16
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-15
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-15
1mh1_A	186	Small G-Protein Length = 186		1e-15
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-15
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-15
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-15
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-15
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		2e-15
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-15
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-15
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-15
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-15
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		4e-15
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-15
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		4e-15
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		4e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		5e-15
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		5e-15
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		6e-15
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		6e-15
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		6e-15
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		6e-15
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		6e-15
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-15
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		7e-15
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		8e-15
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		9e-15
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-14
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-14
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-14
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-14
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-14
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-14
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-14
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-14
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-14
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-14
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-14
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-14
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-14
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		3e-14
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-14
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-14
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-14
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-14
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		4e-14
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		5e-14
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		5e-14
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		7e-14
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		7e-14
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-13
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-13
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-13
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-13
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-13
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-13
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-13
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-13
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-13
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-13
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		5e-13
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		5e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		7e-13
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-12
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-12
4q21_A	189	Molecular Switch For Signal Transduction: Structura		4e-12
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-12
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-12
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		6e-12
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		6e-12
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		6e-12
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		6e-12
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		6e-12
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		6e-12
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		6e-12
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		6e-12
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		6e-12
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		7e-12
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		7e-12
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		7e-12
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		7e-12
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		7e-12
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		7e-12
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		8e-12
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		8e-12
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		8e-12
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		8e-12
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-11
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-11
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-11
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-11
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		1e-11
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		1e-11
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		1e-11
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-11
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-11
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-11
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-11
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-11
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-11
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-11
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-11
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-11
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-11
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-11
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-11
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-11
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-11
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-11
2kb0_A	178	Cdc42(T35a) Length = 178		3e-11
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-11
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		3e-11
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		3e-11
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-11
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		4e-11
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		4e-11
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		4e-11
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-11
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		4e-11
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		5e-11
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		5e-11
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		5e-11
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-11
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		5e-11
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-11
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		8e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		8e-11
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		9e-11
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-10
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-10
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-10
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-10
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-10
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-10
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-10
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-10
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-10
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-10
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		4e-10
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-09
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-09
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-09
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-09
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-08
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		1e-07
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		3e-07
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		6e-06
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-05
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		2e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		3e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		3e-05
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		3e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		3e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		5e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		5e-05
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		7e-05
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		8e-05
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		8e-05
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		9e-05
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		9e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-04
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		2e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		2e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		3e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		3e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		3e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-04
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		4e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		4e-04
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		6e-04
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		7e-04
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		7e-04

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  287 bits (735), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 136/174 (78%), Positives = 157/174 (90%)
Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQERYR ITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGNK+D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183
           LRHL AV T++A+AFAE+ N  F+ETSAL+S NVE AF  +LT+IY +VS+K +
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  281 bits (720), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/169 (79%), Positives = 154/169 (91%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           D++YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQI
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGN
Sbjct: 83  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           K+DLRHL AV T++A+AFAE+    F+ETSAL+S NVE AF  +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  280 bits (715), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 133/168 (79%), Positives = 152/168 (90%)
Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQIWDT
Sbjct: 17  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGNK+D
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV 177
           LRHL AV T++A+AFAE+    F+ETSAL+S NVE AF  +LT+IY +
Sbjct: 137 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  278 bits (712), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 153/169 (90%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           D++YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQI
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGN
Sbjct: 83  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           K+DLRHL AV T++A+AFAE+    F+ETSAL+S NVE AF  +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  276 bits (707), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 132/170 (77%), Positives = 153/170 (90%)
Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
           ++YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQIW
Sbjct: 3   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
           DTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGNK
Sbjct: 63  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV 177
           +DLRHL AV T++A+AFAE+    F+ETSAL+S NVE AF  +LT+IY +
Sbjct: 123 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  275 bits (703), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 132/169 (78%), Positives = 152/169 (89%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           D++YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQI
Sbjct: 5   DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVI LVGN
Sbjct: 65  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           K+DLRHL AV T++A+AFAE+    F+ETSAL+S NVE AF  +LT+IY
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  273 bits (697), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 150/167 (89%)
Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           +YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQIWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVI LVGNK+
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           DLRHL AV T++A+AFAE+    F+ETSAL+S NVE AF  +LT+IY
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  258 bits (659), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 122/173 (70%), Positives = 153/173 (88%), Gaps = 1/173 (0%)
Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWD 68
           YDYL+K+VLIGDSGVGKSNLLSRFTR+EF+LESKSTIGVEFAT+SI++++ KI+KAQIWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQERYRAITSAYYRGAVGALLVYD+T+  +FEN+E+WLKELR + DSNIVI+LVGNK+
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           DL+HL  ++  DA  +A++E   F+ETSALE+ NVE AF ++L +IY+V  +K
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKK 176

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  251 bits (641), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 152/199 (76%), Gaps = 7/199 (3%)
Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           DYD L+K+VLIGDSGVGKSNLLSRFT+NEF+++SKSTIGVEFATR++ +E K +KAQIWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQERYRAITSAYYRGAVGAL+VYD+++  ++EN   WL ELR + D N+ + L+GNK+
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIG-- 186
           DL HL AV TE++K FA+     F ETSAL S NV+ AF E++  IY  VS+  +D+G  
Sbjct: 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDS 188
Query: 187 -----GDPAALPKGQTINV 200
                 + A+ P G TI++
Sbjct: 189 SANGNANGASAPNGPTISL 207

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 143/179 (79%)
Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           DYDYL+K+VLIGDSGVGKSNLLSRFT +EF++ESKSTIGVEFATR+I VE+K +KAQIWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAG ERYRAITSAYYRGAVGAL+VYD+++  ++EN   WL ELR + D N+ + L+GNK+
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGG 187
           DL HL AV T++AK FA      F ETSAL S NV+ AF E++  I+ +VS+  +D+ G
Sbjct: 126 DLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSG 184

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/177 (63%), Positives = 142/177 (80%)
Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
           R  EDY++++KVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ +    VKA
Sbjct: 17  RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76
Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV 124
           QIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL  H ++ IV+MLV
Sbjct: 77  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136
Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           GNK+DL     V TE+A+ FAE     F+ETSAL+S NVE AF  VL +I+  VS++
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  231 bits (589), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 141/174 (81%)
Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
           EDY++++KVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ +    VKAQIW
Sbjct: 5   EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
           DTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL  H ++ IV+MLVGNK
Sbjct: 65  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 124
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           +DL     V TE+A+ FAE     F+ETSAL+S NVE AF  VL +I+  VS++
Sbjct: 125 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 115/171 (67%)
Query: 6   ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ 65
           A  +Y Y++K ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I V  + +K Q
Sbjct: 8   APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVG 125
           IWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R  T+ N VI+L+G
Sbjct: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 126 NKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
           NKADL     V+ E+AK FAE     F+E SA    NVE+AF E   +IY 
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/166 (53%), Positives = 113/166 (68%)
Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           Y YL+K ++IGD+GVGKS LL +FT   F      TIGVEF  R I ++ K +K QIWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+D
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           L     V  E+ +AFA      FMETSA  + NVE AF     +IY
Sbjct: 127 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 114/171 (66%)
Query: 6   ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ 65
           A  +Y Y++K ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I V  + +K Q
Sbjct: 23  APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVG 125
           IWDTAGQ R+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R  T+ N VI+L+G
Sbjct: 83  IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 126 NKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
           NKADL     V+ E+AK FAE     F+E SA    NVE+AF E   +IY 
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 113/169 (66%)
Query: 12  YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
           YL+K ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++ K +K QIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
           QE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H+ SN+VIML+GNK+DL 
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
               V  E+ +AFA      FMETSA  + NVE AF     +IY  + +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/209 (44%), Positives = 137/209 (65%), Gaps = 5/209 (2%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           + +YDYL+K++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++ ++ K VK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIG 186
           K DL+    V  + AK FA+     F+ETSAL+S NVE+AF  +  QI   +S++ L+  
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 187 GDPAALPKGQTINVGGKDDVSAVKKVGCC 215
                  KG  +N+ G+   S     GCC
Sbjct: 182 TQKKE-DKGN-VNLKGQ---SLTNTGGCC 205

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/215 (43%), Positives = 137/215 (63%), Gaps = 16/215 (7%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           + +YDYL+K++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++ ++ K VK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIG 186
           K DL+    V  + AK FA+     F+ETSAL+S NVE+AF  +  QI   +S++ L+  
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 187 GDPAALP-----KGQTI-NVGGKDDVSAVKKVGCC 215
                       KGQ++ N GG          GCC
Sbjct: 182 TQKKEDKGNVNLKGQSLTNTGG----------GCC 206

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 119/166 (71%)
Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           +YDYL+K++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++ ++ K VK QIWD
Sbjct: 17  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGNK 
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL+    V  + AK FA+     F+ETSAL+S NVE+AF  +  QI
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 114/170 (67%)
Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
           R   +YDYL+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K 
Sbjct: 17  RGSPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 76
Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV 124
           QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LV
Sbjct: 77  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 136
Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           GNK DL     V    AK FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 114/168 (67%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           + +YDYL+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K QI
Sbjct: 10  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGN
Sbjct: 70  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           K DL     V    AK FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 118/170 (69%), Gaps = 1/170 (0%)
Query: 6   ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ 65
            DE YD+L+K+VL+GD+ VGK+ ++ RF    FS    STIGV+F  +++ ++ K VK Q
Sbjct: 22  PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVG 125
           IWDTAGQER+R IT +YYR A GA+L YD+T+  +F +V  W++++R +  SNIV +L+G
Sbjct: 82  IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141
Query: 126 NKADLRHLCAVSTEDAKAFAERENTFF-METSALESMNVENAFTEVLTQI 174
           NK+DL  L  VS  +A++ AE  +    +ETSA +S NVE AF  V T++
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  166 bits (420), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 114/166 (68%)
Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           +YDYL+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K QIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +LVGNK+
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL     V    AK FA+     F+ETSA  + NVE AF  +  +I
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 114/166 (68%)
Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           +YDYL+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K QIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +LVGNK+
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL     V    AK FA+     F+ETSA  + NVE AF  +  +I
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 113/166 (68%)
Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           +YDYL+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K QIWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK 
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL     V    AK FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 118/168 (70%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           + +YDYL+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I +E+K VK QI
Sbjct: 3   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F+NV++W++E+  +   N+  +LVGN
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           K DL     V++++ +  A+     F+ETSA  + NVE AF  +  +I
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 113/168 (67%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           + +YDYL+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K QI
Sbjct: 27  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGN
Sbjct: 87  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           K DL     V    AK FA+     F+ETSA  + NVE +F     +I
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 114/168 (67%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           + +YDYL+K++LIGDSGVGK+ LL RF  + ++    STIGV+F  R+I ++ K +K QI
Sbjct: 10  NPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGN
Sbjct: 70  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           K DL     V    AK FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  163 bits (413), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 77/158 (48%), Positives = 111/158 (70%)
Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           YDYL+K++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I ++ K +K QIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ +  H  +++  M++GNK D
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
           +     VS E  +  A      FMETSA  ++NVENAF
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  163 bits (412), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/177 (47%), Positives = 112/177 (63%)
Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
           E YD+L+K ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I V  K VK QIW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
           DTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GNK
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALD 184
            DL     V+  +A  FA+     F+ETSAL   NVE AF +   +I + +    LD
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 113/168 (67%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           + +YDYL+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K QI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVG 
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           K DL     V    AK FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 110/174 (63%)
Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           D+L+K ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V  K VK QIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           GQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R     NIV++L GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALD 184
                V+  +A  FA+     F+ETSAL   NVE AF +    I + +    LD
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 112/166 (67%)
Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           +YD L+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K QIWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK 
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL     V    AK FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 115/171 (67%)
Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           DYL+K++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I ++ K +K QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           GQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ +  H  +++  M++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
                VS E  +  A      FMETSA  ++NVENAF  +   I   + +K
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 109/169 (64%)
Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
           E YD+L+K ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I V  K VK QIW
Sbjct: 6   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
           DTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GNK
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 125
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
            DL     V+  +A  FA+     F+ETSAL   +VE AF +   +I +
Sbjct: 126 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           DYD+L+K+++IGDSGVGKS+LL RF  N FS    +TIGV+F  R++ +  + VK QIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQER+R ITS YYRG  G ++VYDVT   +F NV+RWL E+  + D ++  +LVGNK 
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKN 123
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
           D      V TEDA  FA +      ETSA E++NVE  F
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 114/167 (68%)
Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
           EDYD+L+K+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ +  + VK QIW
Sbjct: 21  EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
           DTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +  + ++ +LVGNK
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            DL     VS + A+ F+E ++ +++ETSA ES NVE  F ++  ++
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  156 bits (395), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 81/189 (42%), Positives = 117/189 (61%), Gaps = 18/189 (9%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+S+ ++D  VK +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   TF   + W+KEL+     +IVI L GNKADL + 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALP 193
             V  E+A+A+A+  +  FMETSA  +MNV + F          +++K          LP
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFL--------AIAKK----------LP 170
Query: 194 KGQTINVGG 202
           K +  N+GG
Sbjct: 171 KSEPQNLGG 179

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 109/163 (66%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+VL+GD G GKS+L+ RF +++F    +STIG  F ++++ V D  VK +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           Y ++   YYRGA  A++V+DVT   +FE  ++W++EL+   + N+V+ L GNK+DL    
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV 177
            V+ EDA+ +A+    FFMETSA  + NV+  F E+  ++  V
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 108/169 (63%)
Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
           E YD+L+K ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I V  K VK QIW
Sbjct: 3   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
           DTAG ER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GNK
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
            DL     V+  +A  FA+     F+ETSAL   +VE AF +   +I +
Sbjct: 123 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/160 (49%), Positives = 107/160 (66%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K QIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           +R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL    
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            V    AK FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 105/157 (66%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   TF   + W+KEL+     NIVI L GNKADL   
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
            AV  ++A+A+A+  +  FMETSA  +MNV   F  +
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            AV  ++A+++A+  +  FMETSA  SMNV   F  +  ++
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            AV  ++A+++A+  +  FMETSA  SMNV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            AV  ++A+++A+  +  FMETSA  SMNV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            AV  ++A+++A+  +  FMETSA  SMNV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            AV  ++A+++A+  +  FMETSA  SMNV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            AV  ++A+++A+  +  FMETSA  SMNV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            AV  ++A+++A+  +  FMETSA  SMNV   F  +  ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 104/157 (66%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STI   F T+++ ++D  VK +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   TF   + W+KEL+     NIVI L GNKADL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
            AV  ++A+A+A+  +  FMETSA  +MNV   F  +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 106/161 (65%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   TF   + W+KEL+     NIVI L GNKADL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            AV  ++A+A+A+  +  FMETSA  +MNV   F  +  ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 107/161 (66%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            AV  ++A+++A+  +  FMETSA  SMNV   F  +  ++
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           YD + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++ +  K VK Q+WDT
Sbjct: 17  YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQER+R IT+AYYRGA+G +LVYDVT   TF N+++W K +  H +    ++LVGNK+D
Sbjct: 77  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
           +     V+ +  +A A+     F+E+SA    NV   F
Sbjct: 137 METRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 173

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 106/161 (65%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            AV  ++A+++A+  +  F ETSA  S NV   F  +  ++
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 105/160 (65%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KV L+GD+GVGKS+++ RF  + F      TIG  F T++++ ++++ K  IWDTAGQER
Sbjct: 7   KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           +RA+   YYRG+  A++VYD+T+  TF  ++ W++ELR H   +IV+ + GNK DL  + 
Sbjct: 67  FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 126
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            V   DAK +A+  +  F+ETSA  ++N+   F E+  +I
Sbjct: 127 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++ +  K VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           GQER+R IT+AYYRGA+G +LVYD+T   TF N+++W K +  H +    ++LVGNK+D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
                V+ +  +A A+     F+E+SA    NV   F
Sbjct: 121 ETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWD 68
           YD  +KV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + + V+   VK Q+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQER+R++T AYYR A   LL+YDVT   +F+N++ WL E+  +   ++ +ML+GNK 
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           D  H   V  ED +  A+     FMETSA   +NV+ AFT +  ++
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 103/160 (64%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KV L+GD+GVGKS+++ RF ++ F      TIG  F T+++   +++ K  IWDTAGQER
Sbjct: 25  KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           + ++   YYRG+  A++VYD+T+  +F  +++W+KEL+ H   NIV+ + GNK DL  + 
Sbjct: 85  FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 144
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            V  +DAK +AE      +ETSA  ++N+E  F  +  QI
Sbjct: 145 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 106/164 (64%)
Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           DY++K++LIG+S VGK++ L R+  + F+    ST+G++F  +++   DK +K QIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           GQERYR IT+AYYRGA+G LL+YD+    +F  V+ W  +++ ++  N  ++LVGNK DL
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                V  ED +  A+     F E SA E++NV+  F  ++  I
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 110/166 (66%)
Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           ++DY++K+++IG+S VGK++ L R+  + F+    ST+G++F  +++   +K VK QIWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LVGNK 
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           D+     V TE  +  AE+    F E SA E+++V  AF  ++  I
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 110/166 (66%)
Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           ++DY++K+++IG+S VGK++ L R+  + F+    ST+G++F  ++I   DK +K QIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LVGNK 
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           D+     VS+E  +  A+     F E SA +++NV+  F  ++  I
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 104/160 (65%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KV L+GD+GVGKS+++ RF  + F      TIG  F T++++ ++++ K  IWDTAG ER
Sbjct: 8   KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           +RA+   YYRG+  A++VYD+T+  TF  ++ W++ELR H   +IV+ + GNK DL  + 
Sbjct: 68  FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            V   DAK +A+  +  F+ETSA  ++N+   F E+  +I
Sbjct: 128 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++ +  K VK Q+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132
           ER+R IT+AYYRGA+G +LVYDVT   TF N+++W K +  H +    ++LVGNK+D+  
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
              V+ +  +A A+     F+E+SA    NV   F
Sbjct: 127 RV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 160

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++ +  K VK QIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           GQER+R IT+AYYRGA G +LVYD+T   TF N+++W K +  H +    ++LVGNK+D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
                V+ +  +A A+     F+E+SA    NV   F
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++ +  K VK Q+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           GQER+R IT+AYYRGA G +LVYDVT   TF N+++W K +  H +    ++LVGNK+D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
                V+ +  +A A+     F+E+SA    NV   F
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 107/171 (62%), Gaps = 2/171 (1%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           DED     K+++IG+SGVGKS+LL RFT + F  E  +TIGV+F  ++I V+    K  I
Sbjct: 9   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGH-TDSNIVIMLVG 125
           WDTAGQER+R +T +YYRGA G +LVYDVTR  TF  ++ WL EL  + T ++IV  LVG
Sbjct: 69  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 126 NKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
           NK D  +   V   +   FA + +  F+E SA     V+ AF E++ +I  
Sbjct: 129 NKIDKENR-EVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  139 bits (351), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 112/181 (61%), Gaps = 2/181 (1%)
Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           +DY +K+++IG+S VGK++ L R+  + F+    ST+G++F  ++I   DK +K QIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AG ERYR IT+AYYRGA G +L YD+T   +F  V+ W  +++ ++  N  ++LVGNK D
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDP 189
                 VS+E  +  A+     F E SA +++NV+  F  ++  I    S ++LD   DP
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXS-ESLDT-ADP 182
Query: 190 A 190
           A
Sbjct: 183 A 183

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 107/165 (64%), Gaps = 1/165 (0%)
Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           D+  +V++IG  GVGK++L+ RFT + F    KST+GV+F  +++ +  K ++ QIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           GQER+ +ITSAYYR A G +LVYD+T+  TF+++ +W+K +  +   +  ++LVGNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 131 RHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
                ++ +  + FA++     F E SA ++ NV+  F +++  I
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 104/157 (66%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+V +G+  VGK++L++RF  + F    ++TIG++F ++++ +ED+ V+ Q+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F    +W+ ++R    S+++IMLVGNK DL   
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
             VSTE+ +  A+  N  F+ETSA    NV+  F  V
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 104/157 (66%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+V +G+  VGK++L++RF  + F    ++TIG++F ++++ +ED+ ++ Q+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
             VS E+ +  A+  N  F+ETSA    NV+  F  V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 104/157 (66%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+V +G+  VGK++L++RF  + F    ++TIG++F ++++ +ED+ V+ Q+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
             VS E+ +  A+  N  F+ETSA    NV+  F  V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  133 bits (334), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 115/192 (59%), Gaps = 3/192 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+V +G+  VGK++L++RF  + F    ++TIG++F ++++ +ED+ ++ Q+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV---LTQIYHVVSRKALDIGGDPA 190
             VS E+ +  A+  N  F+ETSA    NV+  F  V   L  +     R   D+     
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193
Query: 191 ALPKGQTINVGG 202
             P+ Q ++ GG
Sbjct: 194 EKPQEQPVSEGG 205

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 108/163 (66%), Gaps = 6/163 (3%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + V+D++V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RGHTDSNIVIMLVGNKA 128
           ER++++  A+YRGA   +LV+DVT   TF+ ++ W  E           N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEV 170
           DL +   V+T+ A+A+   + N  + ETSA E++NVE AF  +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 115/192 (59%), Gaps = 3/192 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+V +G+  VGK++L++RF  + F    ++TIG++F ++++ +ED+ V+ Q+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV---LTQIYHVVSRKALDIGGDPA 190
             VS E+ +  A+  N  F+ETSA    NV+  F  V   L  +     R   D+     
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 196
Query: 191 ALPKGQTINVGG 202
             P+ Q ++ GG
Sbjct: 197 EKPQEQPVSEGG 208

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 85/115 (73%)
Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75
           ++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K QIWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76  RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 108/163 (66%), Gaps = 6/163 (3%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + V+D++V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RGHTDSNIVIMLVGNKA 128
           ER++++  A+YRGA   +LV+DVT   TF+ ++ W  E           N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEV 170
           DL +   V+T+ A+A+   + N  + ETSA E++NVE AF  +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + V+D++V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RGHTDSNIVIMLVGNKA 128
           ER++++  A+YRGA   +LV+DVT   TF+ ++ W  E           N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEV 170
           D  +   V+T+ A+A+   + N  + ETSA E++NVE AF  +
Sbjct: 128 DFENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 105/161 (65%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V +G+  VGK+++++RF  + F    +STIG++F ++++ +++  V+ Q+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +FEN  +W++++      +++I LVGNK DL  L
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             V+ E+    A+  NT F ETSA    N++  F +  +++
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 104/157 (66%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+V +G+  VGK++L++RF  + F    ++TIG++F ++++ +ED+ V+ Q+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
             ++ E+ +  A+  +  F+ETSA    NV+  F  V
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 103/157 (65%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+V +G+  VGK++L++RF  + F    ++TIG++F ++++ +ED+ V+ Q+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
             VS E+ +  A+  N  F+ETSA    NV+  F  V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 108/181 (59%), Gaps = 11/181 (6%)
Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK---- 60
           R   DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +    +    
Sbjct: 17  RGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 76
Query: 61  ------IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGH 114
                  V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +
Sbjct: 77  SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136
Query: 115 TD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
               N  I+L+GNKADL     V+   A+  A++    + ETSA    NVE A   +L  
Sbjct: 137 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196
Query: 174 I 174
           I
Sbjct: 197 I 197

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + V+D++V  QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RGHTDSNIVIMLVGNKA 128
           ER++++  A+YRGA   +LV+DVT   TF+ ++ W  E           N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEV 170
           DL +   V+T+ A+A+   + N  + ETSA E++NVE AF  +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 6/167 (3%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+K++L+GD GVGKS+L++R+  N+F  +   TIGVEF  + + V+   V  QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKA 128
           ER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 129 DLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
           D++    VSTE+A+A+ +    + + ETSA +S NV  AF E + +I
Sbjct: 131 DIKER-QVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 14/219 (6%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK------ 60
           D DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  + +      
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61  ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHT- 115
                V  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +  
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 116 DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
             N  I+L+GNKADL     V+   A+  AE+    + ETSA    NVE +  E L  + 
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS-VETLLDLI 183
Query: 176 HVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGC 214
                K ++    P  +  G +  + G+    A KK  C
Sbjct: 184 MKRMEKCVEKTQVPDTVNGGNSGKLDGEK--PAEKKCAC 220

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 108/179 (60%), Gaps = 11/179 (6%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK------ 60
           D DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  + +      
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61  ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD 116
                V  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +  
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             N  I+L+GNKADL     V+   A+  AE+    + ETSA    NVE +   +L  I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 113/188 (60%), Gaps = 15/188 (7%)
Query: 6   ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-------- 57
           +D DYDYL K + +GDSGVGK+++L ++T  +F+ +  +T+G++F  R  RV        
Sbjct: 4   SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDF--REKRVVYRANGPD 61
Query: 58  ----EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRG 113
                 + +  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121
Query: 114 HTDS-NIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172
           H  S N  I+L GNK+DL    AV  E+A+  AE+    + ETSA    N+ +A   +L 
Sbjct: 122 HAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
Query: 173 QIYHVVSR 180
            I   + R
Sbjct: 182 LIMKRMER 189

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 102/163 (62%)
Query: 12  YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
           Y +KVVL+G+  VGK++L+ R+  N+F+ +  +T+G  F T+ + +  K V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
           QER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS ++A+++AE        TSA ++  +E  F ++  ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  126 bits (317), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+VL+G++ VGKS+++ RF  N+F+   + TIG  F T+ + + +  VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           + ++   YYR A  AL+VYDVT+  +F     W+KEL      +I+I LVGNK D     
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 135 A---VSTEDAKAFAERENTFFMETSALESMNVENAF 167
               V+ E+ +  AE +   F ETSA    NV + F
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 6/167 (3%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+KV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + + V+   V  QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKA 128
           ER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 129 DLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
           D+     VSTE+A+A+      + + ETSA ++ NV  AF E + ++
Sbjct: 129 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 6/167 (3%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+KV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + + V+   V  QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKA 128
           ER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 129 DLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
           D+     VSTE+A+A+      + + ETSA ++ NV  AF E + ++
Sbjct: 127 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 105/170 (61%), Gaps = 6/170 (3%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L KV+L+GD GVGKS+L++R+  N+F  ++  TIGVEF  R + V+ + V  QIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKA 128
           ER++++ + +YRGA   LL + V    +FEN+  W KE   + D     +   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 129 DLRHLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVLTQIYHV 177
           D +    V+TE+A+ +  E  +  ++ETSA +  NV  AF E + Q+  V
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 105/179 (58%), Gaps = 11/179 (6%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK------ 60
           D DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  + +      
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61  ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD 116
                V  Q+WDTAG ER+R++T+A++R A G LL +D+T   +F NV  W  +L+ +  
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             N  I+L+GNKADL     V+   A+  AE+    + ETSA    NVE +   +L  I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 105/179 (58%), Gaps = 11/179 (6%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK------ 60
           D DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  + +      
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61  ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD 116
                V  Q+WDTAG ER+R++T+A++R A G LL +D+T   +F NV  W  +L+ +  
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             N  I+L+GNKADL     V+   A+  AE+    + ETSA    NVE +   +L  I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 101/163 (61%)
Query: 12  YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
           Y +KVVL+G+  VGK++L+ R+  N+F+ +  +T+   F T+ + +  K V   IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
           QER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK DL 
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS ++A+++AE        TSA ++  +E  F ++  ++
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 101/163 (61%)
Query: 12  YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
           Y +KVVL+G+  VGK++L+ R+  N+F+ +  +T+   F T+ + +  K V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
           QER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS ++A+++AE        TSA ++  +E  F ++  ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 10/169 (5%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+VL GD+ VGKS+ L R  +NEF     +T+GV+F  +++ V+ +    Q+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R+I  +Y+R A G LL+YDVT   +F N+  W+  +       + IMLVGNKAD+R  
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 134 CAVSTEDAKA----FAER----ENTFFMETSALESMNVENAFTEVLTQI 174
            A  TE  K     F E+        F ETSA +  N+  A   +  ++
Sbjct: 149 AA--TEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 106/166 (63%), Gaps = 9/166 (5%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAG 71
           + KV+++GDSGVGK++L+ R+  +++S + K+TIG +F T+ + V+ DK+   Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN----IVIMLVGNK 127
           QER++++  A+YRGA   +LVYDVT   +FEN++ W  E   H + N       +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 128 ADLRHLCA-VSTEDAKAFAER--ENTFFMETSALESMNVENAFTEV 170
            D       VS + A+  A+   +   F+ TSA  ++NV+ AF E+
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEI 172

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           ++K+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ ++ + +K Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 73  ERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN-IVIMLVGNKADL 130
           ER+R ++   YYR     + VYD T   +F ++  W++E + H  +N I  +LVGNK DL
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSA 157
           R    V T+ A+ FA+  +    ETSA
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSA 175

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 93/147 (63%), Gaps = 2/147 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           ++K+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ ++ + +K Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 73  ERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN-IVIMLVGNKADL 130
           ER+R ++   YYR     + VYD+T   +F ++  W++E + H  +N I  +LVGNK DL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSA 157
           R    V T+ A+ FA+  +    ETSA
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSA 166

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 1/153 (0%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++G+  VGKS+++ R+ +  F+ + K TIGV+F  R I+V D+ V+  +WDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           + AIT AYYRGA   +LV+  T   +FE +  W +++      +I   LV NK DL    
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDS 125
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            +  E+A+  A+R    F  TS  E +NV   F
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 40/199 (20%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI------------ 61
           YK VL+G+S VGKS+++ R T++ F   + +TIG  F T  + + D              
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 62  -------------------------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96
                                    +K  IWDTAGQERY +I   YYRGA  A++V+D++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 97  RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETS 156
              T +  + W+ +L+    SN +I+LV NK D ++   V   + + +A+  N  F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 157 ALESMNVENAFTEVLTQIY 175
           A    N++N F  +  +IY
Sbjct: 185 AKTGTNIKNIFYMLAEEIY 203

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           +Y  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++ + V+  I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS E+AK  AE+ N  ++ETSA    NV+  F +++ +I
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+KV+++G  GVGKS L  +F  +EF +E       +   + + ++ + V+  I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS E+AK  AE+ N  ++ETSA    NV+  F +++ +I
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+KV+++G  GVGKS L  +F  +EF +E       +   + + ++ + V+  I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS E+AK  AE+ N  ++ETSA    NV+  F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 135 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 166

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +   T+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 5/141 (3%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI-VKAQIWDTAGQE 73
           K+V++GD   GK++L + F +  F  + K TIG++F  R I +   + V  QIWD  GQ 
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADL 130
               +   Y  GA G LLVYD+T + +FEN+E W   +K++   +++  ++ LVGNK DL
Sbjct: 68  IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127
Query: 131 RHLCAVSTEDAKAFAERENTF 151
            H+  +  E    F + EN F
Sbjct: 128 EHMRTIKPEKHLRFCQ-ENGF 147

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 122
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 123 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 154

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 10/183 (5%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++ +DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAA 191
            + A S      F  ++N  + + SA  + N E  F  +  ++   +    L+    PA 
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL---IGDPNLEFVAXPAL 182
Query: 192 LPK 194
            P 
Sbjct: 183 APP 185

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +   T+GVE            +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++ + V+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS E+AK  A++ N  ++ETSA    NV+  F +++ +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG-VEFATRSIRVEDKIVKAQIWDTAGQ 72
           YK+ LIGD GVGK+  ++R     F     +T+G V      +  +  ++K  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132
           E+   +   YY GA GA+L +DVT  +T +N+ RW+KE +    +   I++  NK D+++
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
              +S +      + +N  + E SA  + N    F
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++ + V+  I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS E+AK  AE+ N  ++ETSA    NV+  F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 6/181 (3%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +TIGVE    S       +K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  +T++NV  W ++L      NI I+L GNK D++  
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKER 131
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALP 193
              +      F  ++N  + + SA  + N E  F  +  ++        L+    PA  P
Sbjct: 132 KVKAK--TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL---AGNPQLEFVASPALAP 186
Query: 194 K 194
Sbjct: 187 P 187

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 131
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 132 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 163

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    E   +  +T+GVE            +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 135 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 166

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D+  R
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 125
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
            + A S      F  ++N  + + SA  + N E  F
Sbjct: 126 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 157

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +TIGVE    S       +K  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  +T++NV  W ++L      NI I+L GNK D++  
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKER 124
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
              +      F  ++N  + + SA  + N E  F
Sbjct: 125 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 156

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +TIGVE    S       +K  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  +T++NV  W ++L      NI I+L GNK D++  
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKER 123
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
              +      F  ++N  + + SA  + N E  F
Sbjct: 124 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 155

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++ + V+  I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSN-IVIMLVGNKADL 130
           E Y AI   Y+R   G LLV+ +T H +F     + ++ LR   + + I +++VGNK+DL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                V  E+A++ AE     ++ETSA    NV+  F +++ +I
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++ + V+  I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSN-IVIMLVGNKADL 130
           E Y AI   Y+R   G LLV+ +T H +F     + ++ LR   + + I +++VGNK+DL
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                V  E+A++ AE     ++ETSA    NV+  F +++ +I
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V T+ A+  A      F+ETSA     V++AF  ++ +I
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK+DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V T+ A+  A      F+ETSA     V++AF  ++ +I
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KVV++G   VGK++L  +F   EFS     T+   ++      +D+     + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEF-HLHLVDTAGQDE 84
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKADLRHL 133
           Y  +  ++  G  G +LVY VT   +F+ +E   ++L  GH  + + ++LVGNKADL   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             V   + K  AE     FME+SA E+   +  FT+V+ +I
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ V+ +IV   +WDTAGQE 
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQED 69
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    YRGA   +L + +    ++ENV ++W+ ELR     N+ I+LVG K DLR  
Sbjct: 70  YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDD 128
Query: 132 ------HLCAV-STEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
                 H   + ST+  +   +     ++E S+    NV+  F   +  +     RK
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           Y++V++G  GVGKS L  +F ++ F  +   TI   +  + + ++D+  +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQE 64
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
            + A+   Y R   G LLV+ VT   +FE + ++ ++ LR        ++L+GNKADL H
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171
              V+ E+ +  A +    +ME SA   MNV+ AF E++
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +  F  E   TI   +  + + V+ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   ++ LR     ++ ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 133 LCAVSTEDAKAFAERE-NTFFMETSALESMNVENAFTEVLTQI 174
              V  E  +  A +  N  F+E+SA   +NV   F +++ QI
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +  F  +   TI   +  + + V+ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   ++ LR     ++ ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 133 LCAVSTEDAKAFAER-ENTFFMETSALESMNVENAFTEVLTQI 174
              V  E  +  A +  N  F+E+SA   +NV   F +++ QI
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +  F  +   TI   +  + + V+ +    +I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   ++ LR     ++ ++LVGNK DL  
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 133 LCAVSTEDAKAFAER-ENTFFMETSALESMNVENAFTEVLTQI 174
              V  E  +  A +  N  F+E+SA   +NV   F +++ QI
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 14/165 (8%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ V+   V   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    YRGA   LL + +    ++EN+ ++WL EL+ H    I I+LVG K DLR  
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRDD 125
Query: 132 ------HLCAVSTEDAKAFAERE---NTFFMETSALESMNVENAF 167
                 H  A S   A+    R+      ++E S+    NV+  F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y     +L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KVVL+GD G GK++LL  F    F  ES +    E    +++V+ K V   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131
           Y  +   +Y  A   LL +DVT   +F+N+  RW  E+  H    + I++VG K DLR
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLR 151

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ V+   V   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131
           Y  +    YRGA   +L + +    ++ENV ++W+ ELR H    + I+LVG K DLR
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y     +L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 126
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 127 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 177

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y     +L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    ++ENV  +W  E+R H  S  +I LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                      L  ++     A A E ++  ++E SAL    ++  F E +
Sbjct: 123 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 173

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y     +L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +  F  +   TI   +  + + V+ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   ++ LR     ++ ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 133 LCAVSTEDAKAFAERE-NTFFMETSALESMNVENAFTEVLTQI 174
              V  E  +  A +  N  F+E+SA   +NV   F +++ QI
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 11  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQED 69
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    ++ENV  +W  E+R H  S  +I LVG K DLR  
Sbjct: 70  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 128
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                      L  ++     A A E ++  ++E SAL    ++  F E +
Sbjct: 129 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 179

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 12  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQED 70
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    ++ENV  +W  E+R H  S  +I LVG K DLR  
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 129
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                      L  ++     A A E ++  ++E SAL    ++  F E +
Sbjct: 130 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 180

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N FS E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 73
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 132
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 10/172 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+ + G +GVGKS L+ RF    F  E   T+   +  ++  ++D++V  +I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV---ERWLKELRGHTDSNIVIMLVGNKADLR 131
                  + R   G +LVYD+T   +FE V   +  L E++     N+ ++LVGNKADL 
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLD 145
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183
           H   VSTE+ +  A      F E SA      E   TE+  ++   V R+ +
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTG---EGNITEIFYELCREVRRRRM 194

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K VL+GD  VGK++L+  +T N +  E   T    F+   + V+ + V+ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDE 80
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           +  +    Y      LL + V    +F+NV E+W+ E+R H      I+LVG ++DLR  
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 133 --------LC---AVSTEDAKAFAER-ENTFFMETSALESMNVENAF 167
                    C    V  E AK  AE  +   ++E SAL   N++  F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V    V   +WDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQED 68
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131
           Y  +    YRGA   +L + +    ++ENV ++W+ EL+ H    + I+LVG K DLR
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLR 125

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F   +F   +  TI   F T+ I V  +    Q+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADLR 131
           Y      Y     G +LVY VT   +FE ++     L ++ G     I IMLVGNK DL 
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLH 122
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
               +S E+ KA AE  N  F+E+SA E+    + F  ++ +
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 90
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 70
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 129
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 130 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 24  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 82
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 141
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F   +F      TI   F T+ I V  +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADLR 131
           Y      Y     G +LVY VT   +FE ++     L ++ G     I IMLVGNK DL 
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLH 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
               +S E+ KA AE  N  F+E+SA E+    + F  ++ +
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F   +F      TI   F T+ I V  +    Q+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADLR 131
           Y      Y     G +LVY VT   +FE ++     L ++ G     I IMLVGNK DL 
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLH 119
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
               +S E+ KA AE  N  F+E+SA E+    + F  ++ +
Sbjct: 120 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 64
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   +  I+LVG K DLR  
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 123
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                      L  ++     A A E  +  ++E SAL    ++  F E +
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 64
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   +  I+LVG K DLR  
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 123
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                      L  ++     A A E  +  ++E SAL    ++  F E +
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F   +F      TI   F T+ I V  +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADLR 131
           Y      Y     G +LVY VT   +FE ++     L ++ G     I IMLVGNK DL 
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLH 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
               +S E+ KA AE  N  F+E+SA E+    + F  ++ +
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   +  I+LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                      L  ++     A A E  +  ++E SAL    ++  F E +
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 173

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F+++EF      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    + EN+ E+W+ E++ H   N+ I+LV NK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 132 -HLC---------AVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
            H+           V T+D +A A R   + ++E SA     V   F
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V +E+ +  A R + F ++E SA     V   F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N    E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 90
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAG E 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 125
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V +E+ +  A R + F ++E SA     V   F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 7/162 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK-IVKAQIWDTAGQ 72
           Y+V + G  GVGKS+L+ RF +  F      T  VE   R +   DK I   QI DT G 
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPT--VEDTYRQVISCDKSICTLQITDTTGS 61
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVE---RWLKELRGHTDSNIVIMLVGNKAD 129
            ++ A+           +LVY +T   + E ++     + E++G  +S I IMLVGNK D
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES-IPIMLVGNKCD 120
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171
                 V + +A+A A      FMETSA  + NV+  F E+L
Sbjct: 121 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAG E 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED 90
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++GD GVGKS L  +F +  F  E   TI   +  +   ++++     + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQE 77
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
            + A+   Y R   G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL H
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LCAVSTEDAKAFAERENTFFMETSALE-SMNVENAFTEVL 171
           L  V+ +  K  A + N  ++ETSA +  +NV+  F +++
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 35/190 (18%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 65
Query: 75  YRAITSAYYRGAVGA-------------------LLVYDVTRHVTFENVE-RWLKELRGH 114
           Y  +    Y   VG                    L+ + +    +FENV  +W  E+R H
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 115 TDSNIVIMLVGNKADLR------------HLCAVSTEDAKAFAERENTF-FMETSALESM 161
              N  I+LVG K DLR             L  ++     A A+      ++E SAL   
Sbjct: 126 C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 184
Query: 162 NVENAFTEVL 171
            ++  F E +
Sbjct: 185 GLKTVFDEAI 194

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y       Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 ------LCAVSTEDAKA-----FAERENTF-FMETSALESMNVENAF 167
                 L  +  E  K       A R   F +ME SA     V   F
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++GD GVGKS L  +F +  F  E   TI   +  +   ++++     + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQWAILDVLDTAGQE 77
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
            + A+   Y R   G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL H
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LCAVSTEDAKAFAERENTFFMETSALE-SMNVENAFTEVL 171
           L  V+ +  K  A + N  ++ETSA +  +NV+  F +++
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 13/173 (7%)
Query: 15  KVVLIGDSGVGKSNLLSRFTR--NEFSLESKSTIGVEFATRSIRVEDKIVKAQIW--DTA 70
           KV ++G++ VGKS L+S FT   ++F  +   T GVE     + + D  V  +++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNK 127
           G + Y+   S Y+ G   A+LV+DV+   +FE+ + W   LK  R   +  +  +LV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 128 ADL---RHLCAVSTEDAKAFAERENTFFMETSA-LESMNVENAFTEVLTQIYH 176
            DL   RH   V  + A+ +A      F + SA     + +  F  + T  Y 
Sbjct: 142 TDLPPQRH--QVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++GD GVGKS L  +F +  F  +   TI   +  +   ++++     + DTAGQE
Sbjct: 14  YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQE 72
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
            + A+   Y R   G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL H
Sbjct: 73  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 133 LCAVSTEDAKAFAERENTFFMETSALE-SMNVENAFTEVL 171
           L  V+ +  K  A + N  ++ETSA +  +NV+  F +++
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 172

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++GD GVGKS L  +F +  F  +   TI   +  +   ++++     + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQE 77
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
            + A+   Y R   G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL H
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LCAVSTEDAKAFAERENTFFMETSALE-SMNVENAFTEVL 171
           L  V+ +  K  A + N  ++ETSA +  +NV+  F +++
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           DE    L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVG 125
           WDTAG E Y  +    Y      L+ + +    +F +V  +W  E+R H   N  I+LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKADLR------------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
            K DLR             L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           DE    L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVG 125
           WDTAG E Y  +    Y      L+ + +    +F +V  +W  E+R H   N  I+LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKADLR------------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
            K DLR             L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           DE    L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ V+ K V   +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVG 125
           WDTAG E Y  +    Y      L+ + +    +F +V  +W  E+R H   N  I+LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKADLR------------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
            K DLR             L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I V+ K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V +E+ +  A R + F ++E SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I V+ K V+  +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
                         V  E+ +  A R   F +ME SA     V   F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +I    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
              V +  A+  A      ++ETSA     VE+AF  ++ +I     RK
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK+DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V T+ A+  A      F+ETSA     V++AF  ++ +I
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK+DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V T+ A+  A      F+ETSA     V++AF  ++ +I
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 132
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFT-RNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
           LY+VVL+GD GVGK++L S F  + E  L  +  +G +   R++ V+ +     + DT  
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 72  QERYRAITS--AYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKA 128
            E+     S  +  +G    ++VY +    +FE+      +LR  H   ++ I+LVGNKA
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
           DL     VS E+ +A A   +  F+ETSA    NV   F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 126
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 123
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRVEDK---IVKAQIWDT 69
           Y+VVLIG+ GVGKS L + F     S++S    +G +   R++ V+ +   I+   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIML 123
            G+  +       +  AY       L+VY +T   +FE       +LR      +I I+L
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           VGNK+DL     VS  + +A A   +  F+ETSA    NV+  F  ++ Q+
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 12  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 129
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK+DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 129
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 128 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 128 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           + K V++GD  VGK+ LL  +  + F  E   T+   +A  S+ V  K     ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131
           E Y  +    Y      L+ + V    +F+NV E W+ EL+ +   N+  +L+G + DLR
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 132 HLC------------AVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVLTQI 174
                           +  E  +  A E     ++E SAL    ++  F E +  I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRVEDK---IVKAQIWDT 69
           Y+VVLIG+ GVGKS L + F     S++S    +G +   R++ V+ +   I+   +W+ 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 70  AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIML 123
            G+  +       +  AY       L+VY +T   +FE       +LR      +I I+L
Sbjct: 98  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           VGNK+DL     VS  + +A A   +  F+ETSA    NV+  F  ++ Q+
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 69
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 129
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 130 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI  E   + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F ++ F  +   TI   + T+   V+    +  I DTAGQE + A+   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 86  AVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAF 144
             G LLV+ +    +F  V +   + LR     +  ++LVGNKADL     V   +A AF
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 145 AERENTFFMETSALESMNVENAFTEVL 171
               +  + E SA   +NV+ AF +++
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLV 167

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
              V +  A+  A      ++ETSA     VE+AF  ++ +I     RK
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
              V +  A+  A      ++ETSA     VE+AF  ++ +I     RK
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           D + +   K+V++GDS  GK+ LL  F ++ F      T+  E  T S  ++ + ++  +
Sbjct: 22  DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSL 80
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVG 125
           WDT+G   Y  +    Y  +   L+ +D++R  T ++V ++W  E++     N  ++LVG
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 139
Query: 126 NKADLR 131
            K+DLR
Sbjct: 140 CKSDLR 145

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDK---IVKAQIWDT 69
           Y+VVLIG+ GVGKS L + F     S++S    +G +   R++ V+ +   I+   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIML 123
            G+  +       +  AY       L+VY +T   +FE       +LR      +I I+L
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           VGNK+DL     VS  + +A A   +  F+ETSA    NV+  F  ++ Q+
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           D + +   K+V++GDS  GK+ LL  F ++ F      T+  E  T S  ++ + ++  +
Sbjct: 17  DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSL 75
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVG 125
           WDT+G   Y  +    Y  +   L+ +D++R  T ++V ++W  E++     N  ++LVG
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 134
Query: 126 NKADLR 131
            K+DLR
Sbjct: 135 CKSDLR 140

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDK---IVKAQIWDT 69
           Y+VVLIG+ GVGKS L + F     S++S    +G +   R++ V+ +   I+   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKA 128
            G+  +  +     +     L+VY +T   +FE       +LR      +I I+LVGNK+
Sbjct: 67  KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL     VS  + +A A   +  F+ETSA    NV+  F  ++ Q+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +F ++  + ++++   DS+ V M LVGNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V T+ A   A+     F+ETSA     VE+AF  ++ +I
Sbjct: 141 R-TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F ++ F      T+  E  T S  ++ + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131
           Y  +    Y  +   L+ +D++R  T ++V ++W  E++     N  ++LVG K+DLR
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR 124

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     + DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E    +   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   +I   +  + + ++ +     I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQE 68
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 128
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 129 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V T+ A+  A      F+ETSA     V++AF  ++ +I
Sbjct: 141 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
              V +  A+  A      ++ETSA     VE+AF
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGN+ DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   +I   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+   E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGK+ L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  +   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  +   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAG E 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
                         ++ E A+  A + +   ++E SAL    ++N F E +
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD  VGK+ LL  F++ E       T+   F +  ++ +++     +WDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR 131
           Y  +    Y  +   LL + V    +F+N+  +W  E++ + D+   + LVG K DLR
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 140

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F    F  +   TI  +F  + I V+      +I DTAG E++ ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKEL-RGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAF 144
             G +LVY +    +F++++    ++ R      + ++LVGNK DL     VS+ + +A 
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           AE     FMETSA     V+  F E++ Q+
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 128 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD  VGK+ LL  F++ E       T+   F +  ++ +++     +WDTAGQE 
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 82
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR 131
           Y  +    Y  +   LL + V    +F+N+  +W  E++ + D+   + LVG K DLR
Sbjct: 83  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 139

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
              A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           +YKV+L+G  GVGKS L   F   E   E+++  G  +  RSI V+ +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKADLR 131
           +  R +           ++VY VT   +FE       +LR      ++ I+LVGNK+DL 
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS ++ +A A   +  F+ETSA    NV+  F  V+ QI
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           +YKV+L+G  GVGKS L   F   E   E+++  G  +  RSI V+ +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 59
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKADLR 131
           +  R +           ++VY VT   +FE       +LR      ++ I+LVGNK+DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS ++ +A A   +  F+ETSA    NV+  F  V+ QI
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           +YKV+L+G  GVGKS L   F   E   E+++  G  +  RSI V+ +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKADLR 131
           +  R +           ++VY VT   +FE       +LR      ++ I+LVGNK+DL 
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS ++ +A A   +  F+ETSA    NV+  F  V+ QI
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++ +F      T+  E     + V+ + V+  +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH 132
           Y  +    Y  +   L+ + +    + ENV E+W+ E+  H    + I+LVG K DLR+
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRN 128

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+VL+GD   GK+ +L    ++ +  E+      E  T  +  E++ V+  +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLR 131
           Y  +    Y  +   LL +D++R  T ++ +++W  E+  +  S  V +L+G K DLR
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLR 128

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+VL+GD   GK+ +L    ++ +  E+      E  T  +  E++ V+  +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLR 131
           Y  +    Y  +   LL +D++R  T ++ +++W  E+  +  S  V +L+G K DLR
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLR 127

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+VL+GD   GK+ +L    ++ +  E+      E  T  +  E++ V+  +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLR 131
           Y  +    Y  +   LL +D++R  T ++ +++W  E+  +  S  V +L+G K DLR
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLR 144

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS+L+ RF +  F      TI   +  + I  +  +   QI DT G  ++ A+       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 86  AVGALLVYDVTRHVTFEN---VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAK 142
               +LV+ VT   + E    + + + +++G  + +I +MLVGNK D      V T +A+
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCDETQR-EVDTREAQ 137
Query: 143 AFAERENTFFMETSALESMNVENAFTEVLT 172
           A A+     FMETSA  + NV+  F E+LT
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK---IVKAQIW 67
           D ++KV+L+G+SGVGKS L   F   +     +     +   R I V+ +   +V   IW
Sbjct: 21  DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 68  ---DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIML 123
              D  G  R   + +         L+V+ VT   +F  V   L  LR G    ++ ++L
Sbjct: 81  EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           VGNK+DL     VS E+ +  A   +   +ETSA    N    F   + QI
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 24/177 (13%)
Query: 11  DYLYKVVLIGDSGVGKSNLLSRFT----RNEFSLESKSTIGVEFATRSIRVEDK---IVK 63
           D ++KV+L+G+SGVGKS L   F      N   +E+      +   R I V+ +   ++ 
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSE----DTYERRIMVDKEEVTLIV 65
Query: 64  AQIW---DTAG--QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDS 117
             IW   D  G  Q+       A+       L+V+ VT   +F  V   L  LR G    
Sbjct: 66  YDIWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHH 118
Query: 118 NIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           ++ ++LVGNK+DL     VS E+ +  A   +   +ETSA    N    F   + QI
Sbjct: 119 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 16/171 (9%)
Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK---IVKAQIW-- 67
           ++KV+L+G+SGVGKS L   F   +     +     +   R I V+ +   ++   IW  
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 68  -DTAG--QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIML 123
            D  G  Q+       A+       L+V+ VT   +F  V   L  LR G    ++ ++L
Sbjct: 62  GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114
Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           VGNK+DL     VS E+ +  A   +   +ETSA    N    F   + QI
Sbjct: 115 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G  G GK+ +L +    E  + +  TIG    T    V+ K +   +WD  GQ+R
Sbjct: 19  RILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQDR 73
Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
            R++   YYR   G + V D   R    E  E   + L      N V ++  NK DL   
Sbjct: 74  IRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEA 133
Query: 134 CAVS--TEDAKAFAERENTFFMETSALES 160
            + +  TE     + R   +F++++   S
Sbjct: 134 MSAAEITEKLGLHSIRNRPWFIQSTCATS 162

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+++L +    E  + +  TIG    T    VE K +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
            R +   YY+     + V D   R    E  E  +K L      N ++++  NK DL   
Sbjct: 74  IRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQA 133
Query: 134 CAVS--TEDAKAFAERENTFFMETSA 157
            ++S  TE       +   ++ +TS 
Sbjct: 134 MSISEVTEKLGLQTIKNRKWYCQTSC 159

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    VE K +   +WD  GQ+R
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQDR 73
Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
            R +   Y++   G + V D   R    E  +   K L      + V++L  NK DL + 
Sbjct: 74  IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNA 133
Query: 134 CAVS--TEDAKAFAERENTFFMETSA 157
            A+S  T+     + R  T++++ + 
Sbjct: 134 MAISEMTDKLGLQSLRNRTWYVQATC 159

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFS-LESKS-TIGVEFATRSIRVEDKIVK---AQIWDT 69
           K+ ++G++G GK+ LL +  + + S L  +S T+G++     I++ DK  +     +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTR-HVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           AG+E + +    +       L VYD+++     +  + WL  ++    S+ VI LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 129 DL 130
           D+
Sbjct: 121 DV 122

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G  G GK+ +L +    E  + +  TIG    T    V+ K +   +WD  GQ+R
Sbjct: 2   RILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQDR 56
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTF----ENVERWLK--ELRGHTDSNIVIMLVGNKA 128
            R++   YYR   G + V D           E ++R L   ELR     N   ++  NK 
Sbjct: 57  IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR-----NAAWLVFANKQ 111
Query: 129 DLRHLCAVS--TEDAKAFAERENTFFMETSALES 160
           DL    + +  TE     + R   +F++ +   S
Sbjct: 112 DLPEAMSAAEITEKLGLHSIRNRPWFIQATCATS 145

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFS-LESKS-TIGVEFATRSIRVEDKIVK---AQIWDT 69
           K+ ++G++G GK+ LL +  + + S L  +S T+G++     I++ DK  +     +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTR-HVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           AG+E + +    +       L VYD+++     +  + WL  ++    S+ VI LVG   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 122
Query: 129 DL 130
           D+
Sbjct: 123 DV 124

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75
           + ++G  G GKS L  +F    F  E    +   +++    V+ + V  ++ DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 76  RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGH---TDSNIVIMLVGNKADLRH 132
           R     Y   A   L+VY V    +F++   +L+ L  H   T  +I  +L+GNK D+  
Sbjct: 83  RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 133 LCAVSTEDAKAFAERENTFFMETSA-LESMNVENAFTEVLTQ 173
              V+  +  A A R    F E SA L+  +V++ F E + +
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 8/149 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G  G GK+ +L +    E  + +  TIG    T    V+ K +   +WD  GQ+R
Sbjct: 19  RILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQDR 73
Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
            R++   YYR   G + V D   R    E  E   + L      N   ++  NK DL   
Sbjct: 74  IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEA 133
Query: 134 CAVS--TEDAKAFAERENTFFMETSALES 160
            + +  TE     + R   +F++ +   S
Sbjct: 134 MSAAEITEKLGLHSIRNRPWFIQATCATS 162

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    + S+ +  T+G    T    V  K VK  +WD  GQ++
Sbjct: 324 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 378
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWL------KELRGHTDSNIVIMLVGNKA 128
            R +   YY G  G + V D       +   + L      +E+R     + +I++  NK 
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMR-----DAIILIFANKQ 433
Query: 129 DL 130
           DL
Sbjct: 434 DL 435

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ---IWDTA 70
           +KV+++G    GK+ +L +F  NE  + +  TIG         VE+ +VK     +WD  
Sbjct: 17  HKVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGS-------NVEEIVVKNTHFLMWDIG 68
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKAD 129
           GQE  R+  + YY      +LV D          +  L  +  H D     +++  NK D
Sbjct: 69  GQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQD 128
Query: 130 LRHLCAVSTEDAK 142
           ++  C  + E +K
Sbjct: 129 MKG-CMTAAEISK 140

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           ++ L+G    GK+  ++     +FS +   T+G  F  R  +V    V  +IWD  GQ R
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMR--KVTKGNVTIKIWDIGGQPR 79
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADL 130
           +R++   Y RG    + + D       E +E    EL    D      I ++++GNK DL
Sbjct: 80  FRSMWERYCRGVNAIVYMIDAADR---EKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136
Query: 131 RHLCAVSTEDAKAFAEREN 149
            +       D K   E+ N
Sbjct: 137 PN-----ALDEKQLIEKMN 150

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    + S+ +  T+G    T    V  K VK  +WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
            R +   YY G  G + V D       +   + L  +    +  + +I++  NK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    + S+ +  T+G    T    V  K VK  +WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
            R +   YY G  G + V D       +   + L  +    +  + +I++  NK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    + S+ +  T+G    T    V  K VK  +WD  GQ++
Sbjct: 15  RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 69
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
            R +   YY G  G + V D       +   + L  +    +  + +I++  NK DL
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    VE K +   +WD  GQ++
Sbjct: 31  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQDK 85
Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
            R +   Y++   G + V D   R    E+ +   K L+     + V+++  NK D+ + 
Sbjct: 86  IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145
Query: 134 CAVS 137
             VS
Sbjct: 146 MPVS 149

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    + S+ +  T+G    T    V  K VK  +WD  GQ++
Sbjct: 14  RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 68
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
            R +   YY G  G + V D       +   + L  +    +  + +I++  NK DL
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           ++ L+G    GK+  ++     +F+ +   T+G  F  R I   +  +K  +WD  GQ R
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 79
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADL 130
           +R++   Y RG    + + D       E +E    EL    D      I ++++GNK DL
Sbjct: 80  FRSMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           ++ L+G    GK+  ++     +F+ +   T+G  F  R I   +  +K  +WD  GQ R
Sbjct: 33  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 88
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADL 130
           +R++   Y RG    + + D       E +E    EL    D      I ++++GNK DL
Sbjct: 89  FRSMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    VE K +   +WD  GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 221
Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
            R +   Y++   G + V D   R    E  E  ++ L      + V+++  NK DL
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++ +G    GK+ +L +    + S+ +  T+G    T    V  K VK  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADL 130
            R +   YY G  G + V D       +   + L  +    +  + +I++  NK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    VE K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56
Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
            R +   Y++   G + V D   R    E  E  ++ L      + V+++  NK DL
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    VE K +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
            R +   Y++   G + V D   R    E  E  ++ L      + V+++  NK DL
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    VE + +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHL 133
            R +   YY    G + V D       ++    L  +    +  + +I++  NK DL + 
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNA 133
Query: 134 CAVS--TEDAKAFAERENTFFMETSA 157
            + +  TE       RE  +F++++ 
Sbjct: 134 MSAAEVTEKLHLNTIRERNWFIQSTC 159

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV---KAQIWDTA 70
           +KV+++G    GK+ +L +F+ NE  + +  TIG         VE+ ++   +  +WD  
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS-------NVEEIVINNTRFLMWDIG 73
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV-GNKAD 129
           GQE  R+  + YY      ++V D T           L ++  H D     +L+  NK D
Sbjct: 74  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 133
Query: 130 LRHLCAVS 137
           ++    V+
Sbjct: 134 VKECMTVA 141

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T    VE K +   +WD  GQ++
Sbjct: 18  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 72
Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
            R +   Y++   G + V D   R    E  E  ++ L      + V+++  NK DL
Sbjct: 73  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 129

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV---KAQIWDTA 70
           +KV+++G    GK+ +L +F+ NE  + +  TIG         VE+ ++   +  +WD  
Sbjct: 23  HKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS-------NVEEIVINNTRFLMWDIG 74
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV-GNKAD 129
           GQE  R+  + YY      ++V D T           L ++  H D     +L+  NK D
Sbjct: 75  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 134
Query: 130 LRHLCAVS 137
           ++    V+
Sbjct: 135 VKECMTVA 142

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV---KAQIWDTA 70
           +KV+++G    GK+ +L +F+ NE  + +  TIG         VE+ ++   +  +WD  
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS-------NVEEIVINNTRFLMWDIG 68
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKAD 129
           GQE  R+  + YY      ++V D T           L ++  H D     +++  NK D
Sbjct: 69  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 128
Query: 130 LRHLCAVS 137
           ++    V+
Sbjct: 129 VKECMTVA 136

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV---KAQIWDTA 70
           +KV+++G    GK+ +L +F+ NE  + +  TIG         VE+ ++   +  +WD  
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-------VEEIVINNTRFLMWDIG 68
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKAD 129
           GQE  R+  + YY      ++V D T           L ++  H D     +++  NK D
Sbjct: 69  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 128
Query: 130 LRHLCAVS 137
           ++    V+
Sbjct: 129 VKECMTVA 136

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    + S+ +  T+G    T    V  K VK  +WD  G ++
Sbjct: 5   RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLDK 59
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
            R +   YY G  G + V D       +   + L  +    +  + +I++  NK DL
Sbjct: 60  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 116

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    + S+ +  T+G    T    V  K VK  +WD  G ++
Sbjct: 4   RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLDK 58
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
            R +   YY G  G + V D       +   + L  +    +  + +I++  NK DL
Sbjct: 59  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 115

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    + S+ +  T+G    T    V  K VK  +WD  G ++
Sbjct: 15  RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLDK 69
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
            R +   YY G  G + V D       +   + L  +    +  + +I++  NK DL
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-122
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-117
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-116
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-116
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-116
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-115
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-115
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-115
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-114
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-113
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-113
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-113
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-112
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-111
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-110
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-110
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-110
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-109
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-109
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-109
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-109
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-109
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-109
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-109
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-108
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-108
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-108
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-107
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-107
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-107
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-107
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-106
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-106
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-106
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-105
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-105
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-105
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-104
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-104
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-102
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-101
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-98
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-91
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-86
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-84
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	4e-82
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-79
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-79
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	6e-79
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-77
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-77
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-74
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-74
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-74
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	6e-74
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	6e-74
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-69
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-67
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-66
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	5e-66
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	8e-66
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-65
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-64
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	9e-64
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-63
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-62
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-62
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	6e-61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	9e-57
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-55
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	9e-49
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-44
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-43
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	5e-43
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	5e-42
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	7e-42
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-40
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-40
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-39
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	7e-39
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-38
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-37
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-36
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-29
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	7e-25
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	9e-22
3llu_A	196	RAS-related GTP-binding protein C; structural geno	5e-14
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	5e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-11
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-11
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-11
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-11
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	5e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-10
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-10
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-10
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-10
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-08
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-08
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-08
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-08
2ged_A	193	SR-beta, signal recognition particle receptor beta	8e-08
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-07
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	7e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	2e-04

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  345 bits (886), Expect = e-122
 Identities = 121/223 (54%), Positives = 158/223 (70%), Gaps = 8/223 (3%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           M++     DYD L+K+VLIGDSGVGKSNLLSRFT+NEF+++SKSTIGVEFATR++ +E K
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
            +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++  ++EN   WL ELR + D N+ 
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA 120

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           + L+GNK+DL HL AV TE++K FA+     F ETSAL S NV+ AF E++  IY  VS+
Sbjct: 121 VGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSK 180

Query: 181 KALDIGGD-------PAALPKGQTINV-GGKDDVSAVKKVGCC 215
             +D+G          A+ P G TI++    ++        CC
Sbjct: 181 HQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  331 bits (850), Expect = e-117
 Identities = 137/194 (70%), Positives = 161/194 (82%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQERYR ITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGNK+D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDP 189
           LRHL AV T++A+AFAE+ N  F+ETSAL+S NVE AF  +LT+IY +VS+K +      
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181

Query: 190 AALPKGQTINVGGK 203
              P    +++   
Sbjct: 182 DESPGNNVVDISVP 195

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  329 bits (845), Expect = e-116
 Identities = 91/209 (43%), Positives = 132/209 (63%), Gaps = 4/209 (1%)

Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           + +YDYL+K++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++ ++ K VK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121

Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIG 186
           K DL+    V  + AK FA+     F+ETSAL+S NVE+AF  +  QI   +S++ L   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL--- 178

Query: 187 GDPAALPKGQTINVGGKDDVSAVKKVGCC 215
            +     K    NV  K          CC
Sbjct: 179 -NETTQKKEDKGNVNLKGQSLTNTGGCCC 206

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  327 bits (840), Expect = e-116
 Identities = 88/176 (50%), Positives = 117/176 (66%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           + +  A  +Y Y++K ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I V  +
Sbjct: 3   LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
            +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R  T+ N V
Sbjct: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV 122

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
           I+L+GNKADL     V+ E+AK FAE     F+E SA    NVE+AF E   +IY 
Sbjct: 123 IILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  327 bits (840), Expect = e-116
 Identities = 83/180 (46%), Positives = 111/180 (61%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
           R     D+L+K ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V  K VK 
Sbjct: 17  RGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKL 76

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV 124
           QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R     NIV++L 
Sbjct: 77  QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILC 136

Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALD 184
           GNK DL     V+  +A  FA+     F+ETSAL   NVE AF +    I + +    LD
Sbjct: 137 GNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  326 bits (838), Expect = e-115
 Identities = 84/178 (47%), Positives = 112/178 (62%)

Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
            E YD+L+K ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I V  K VK QI
Sbjct: 4   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 63

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GN
Sbjct: 64  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123

Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALD 184
           K DL     V+  +A  FA+     F+ETSAL   NVE AF +   +I + +    LD
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  325 bits (836), Expect = e-115
 Identities = 113/177 (63%), Positives = 142/177 (80%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
           R  EDY++++KVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ +    VKA
Sbjct: 17  RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV 124
           QIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL  H ++ IV+MLV
Sbjct: 77  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136

Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           GNK+DL     V TE+A+ FAE     F+ETSAL+S NVE AF  VL +I+  VS++
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  325 bits (835), Expect = e-115
 Identities = 68/197 (34%), Positives = 113/197 (57%)

Query: 6   ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ 65
               +DY++K+++IG+S VGK++ L R+  + F+    ST+G++F  ++I   DK +K Q
Sbjct: 1   GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQ 60

Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVG 125
           IWDTAG ERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LVG
Sbjct: 61  IWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120

Query: 126 NKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDI 185
           NK D+     VS+E  +  A+     F E SA +++NV+  F  ++  I   +S      
Sbjct: 121 NKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTA 180

Query: 186 GGDPAALPKGQTINVGG 202
                   +G  +    
Sbjct: 181 DPAVTGAKQGPQLTDQQ 197

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  323 bits (831), Expect = e-114
 Identities = 133/171 (77%), Positives = 153/171 (89%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
             D++YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KA
Sbjct: 21  TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 80

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV 124
           QIWDTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLV
Sbjct: 81  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 140

Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           GNK+DLRHL AV T++A+AFAE+    F+ETSAL+S NVE AF  +LT+IY
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  321 bits (824), Expect = e-113
 Identities = 74/184 (40%), Positives = 118/184 (64%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           +    + EDYD+L+K+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ +  +
Sbjct: 14  LVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE 73

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
            VK QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +  + ++
Sbjct: 74  KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI 133

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
            +LVGNK DL     VS + A+ F+E ++ +++ETSA ES NVE  F ++  ++     +
Sbjct: 134 TVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQ 193

Query: 181 KALD 184
             L 
Sbjct: 194 NTLV 197

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  319 bits (821), Expect = e-113
 Identities = 85/186 (45%), Positives = 119/186 (63%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
             + +YDYL+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K 
Sbjct: 8   SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV 124
           QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LV
Sbjct: 68  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 127

Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALD 184
           GNK DL     V    AK FA+     F+ETSA  + NVE +F  +  +I   +   A  
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 187

Query: 185 IGGDPA 190
            G + +
Sbjct: 188 GGAEKS 193

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  319 bits (819), Expect = e-113
 Identities = 73/180 (40%), Positives = 113/180 (62%)

Query: 2   AAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI 61
            +  A  +     K+VL+GD G GKS+L+ RF +++F    +STIG  F ++++ V D  
Sbjct: 1   GSMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT 60

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVI 121
           VK +IWDTAGQERY ++   YYRGA  A++V+DVT   +FE  ++W++EL+   + N+V+
Sbjct: 61  VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVM 120

Query: 122 MLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
            L GNK+DL     V+ EDA+ +A+    FFMETSA  + NV+  F E+  ++  V   +
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  319 bits (819), Expect = e-112
 Identities = 86/178 (48%), Positives = 113/178 (63%)

Query: 6   ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ 65
                 YL+K ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++ K +K Q
Sbjct: 14  LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQ 73

Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVG 125
           IWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H+ SN+VIML+G
Sbjct: 74  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 133

Query: 126 NKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183
           NK+DL     V  E+ +AFA      FMETSA  + NVE AF     +IY  + +   
Sbjct: 134 NKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  315 bits (810), Expect = e-111
 Identities = 65/215 (30%), Positives = 117/215 (54%), Gaps = 9/215 (4%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           M+      +    +K+V +G+  VGK++L++RF  + F    ++TIG++F ++++ +ED+
Sbjct: 4   MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 63

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
            V+ Q+WDTAG ER+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++
Sbjct: 64  TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 123

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           IMLVGNK DL     VS E+ +  A+  N  F+ETSA    NV+  F  V   +  + S 
Sbjct: 124 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 183

Query: 181 KALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCC 215
           +            +   I++  +         G C
Sbjct: 184 Q---------DRSREDMIDIKLEKPQEQPVSEGGC 209

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  313 bits (805), Expect = e-110
 Identities = 69/178 (38%), Positives = 110/178 (61%)

Query: 2   AAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI 61
           ++       DY++K++LIG+S VGK++ L R+  + F+    ST+G++F  +++   DK 
Sbjct: 11  SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR 70

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVI 121
           +K QIWDTAGQERYR IT+AYYRGA+G LL+YD+    +F  V+ W  +++ ++  N  +
Sbjct: 71  IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQV 130

Query: 122 MLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVS 179
           +LVGNK DL     V  ED +  A+     F E SA E++NV+  F  ++  I   ++
Sbjct: 131 ILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  313 bits (804), Expect = e-110
 Identities = 78/181 (43%), Positives = 116/181 (64%)

Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
            + YDYL+K++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I ++ K +K QI
Sbjct: 2   AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ +  H  +++  M++GN
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121

Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIG 186
           K D+     VS E  +  A      FMETSA  ++NVENAF  +   I   + +      
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATA 181

Query: 187 G 187
            
Sbjct: 182 A 182

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  312 bits (802), Expect = e-110
 Identities = 79/205 (38%), Positives = 119/205 (58%), Gaps = 3/205 (1%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
            A+    + YD + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++ +  K
Sbjct: 8   SASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK 67

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
            VK Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+++W K +  H +    
Sbjct: 68  KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ 127

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           ++LVGNK+D+     V+ +  +A A+     F+E+SA    NV   F  +   I   +  
Sbjct: 128 LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 186

Query: 181 KALDIGGDPAALPKGQTINVGGKDD 205
             L   G+        +IN G  + 
Sbjct: 187 NKLVGVGNGK--EGNISINSGSGNS 209

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  311 bits (798), Expect = e-109
 Identities = 73/177 (41%), Positives = 108/177 (61%), Gaps = 1/177 (0%)

Query: 6   ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKA 64
             + YD  +KV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + + V+   VK 
Sbjct: 3   GVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKL 62

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV 124
           Q+WDTAGQER+R++T AYYR A   LL+YDVT   +F+N++ WL E+  +   ++ +ML+
Sbjct: 63  QMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLL 122

Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           GNK D  H   V  ED +  A+     FMETSA   +NV+ AFT +  ++     + 
Sbjct: 123 GNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  311 bits (799), Expect = e-109
 Identities = 83/172 (48%), Positives = 114/172 (66%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
             + +YDYL+K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I ++ K +K 
Sbjct: 25  SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 84

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV 124
           QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LV
Sbjct: 85  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 144

Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
           GNK DL     V    AK FA+     F+ETSA  + NVE +F  +  +I  
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  311 bits (798), Expect = e-109
 Identities = 66/180 (36%), Positives = 106/180 (58%)

Query: 2   AAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI 61
           +            KV L+GD+GVGKS+++ RF ++ F      TIG  F T+++   +++
Sbjct: 12  SGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNEL 71

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVI 121
            K  IWDTAGQER+ ++   YYRG+  A++VYD+T+  +F  +++W+KEL+ H   NIV+
Sbjct: 72  HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVM 131

Query: 122 MLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
            + GNK DL  +  V  +DAK +AE      +ETSA  ++N+E  F  +  QI  +   +
Sbjct: 132 AIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  311 bits (798), Expect = e-109
 Identities = 81/175 (46%), Positives = 119/175 (68%), Gaps = 1/175 (0%)

Query: 2   AAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI 61
            +   DE YD+L+K+VL+GD+ VGK+ ++ RF    FS    STIGV+F  +++ ++ K 
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVI 121
           VK QIWDTAGQER+R IT +YYR A GA+L YD+T+  +F +V  W++++R +  SNIV 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137

Query: 122 MLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVENAFTEVLTQIY 175
           +L+GNK+DL  L  VS  +A++ AE  +    +ETSA +S NVE AF  V T++ 
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  309 bits (794), Expect = e-109
 Identities = 63/167 (37%), Positives = 102/167 (61%)

Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
              Y +KVVL+G+  VGK++L+ R+  N+F+ +  +T+G  F T+ + +  K V   IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK 
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121

Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           DL     VS ++A+++AE        TSA ++  +E  F ++  ++ 
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  309 bits (794), Expect = e-109
 Identities = 64/176 (36%), Positives = 109/176 (61%), Gaps = 1/176 (0%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           +    +    D+  +V++IG  GVGK++L+ RFT + F    KST+GV+F  +++ +  K
Sbjct: 14  LVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK 73

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
            ++ QIWDTAGQER+ +ITSAYYR A G +LVYD+T+  TF+++ +W+K +  +   +  
Sbjct: 74  KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE 133

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVENAFTEVLTQIY 175
           ++LVGNK D      ++ +  + FA++     F E SA ++ NV+  F +++  I 
Sbjct: 134 LLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  309 bits (793), Expect = e-109
 Identities = 69/175 (39%), Positives = 112/175 (64%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
               ++DY++K+++IG+S VGK++ L R+  + F+    ST+G++F  +++   +K VK 
Sbjct: 15  YFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKL 74

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV 124
           QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LV
Sbjct: 75  QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILV 134

Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVS 179
           GNK D+     V TE  +  AE+    F E SA E+++V  AF  ++  I   +S
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  308 bits (792), Expect = e-108
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 4/177 (2%)

Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI-VKAQIW 67
            +    K+V++GD   GK++L + F +  F  + K TIG++F  R I +   + V  QIW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWL---KELRGHTDSNIVIMLV 124
           D  GQ     +   Y  GA G LLVYD+T + +FEN+E W    K++   +++  ++ LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           GNK DL H+  +  E    F +         SA    +V   F +V  +I  +   K
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  308 bits (790), Expect = e-108
 Identities = 68/193 (35%), Positives = 112/193 (58%), Gaps = 11/193 (5%)

Query: 3   AYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE---- 58
              +D DYDYL K + +GDSGVGK+++L ++T  +F+ +  +T+G++F  + +       
Sbjct: 1   GSMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGP 60

Query: 59  ------DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR 112
                  + +  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+
Sbjct: 61  DGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120

Query: 113 GHTDS-NIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171
            H  S N  I+L GNK+DL    AV  E+A+  AE+    + ETSA    N+ +A   +L
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

Query: 172 TQIYHVVSRKALD 184
             I   + R    
Sbjct: 181 DLIMKRMERSVDK 193

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  306 bits (786), Expect = e-108
 Identities = 83/175 (47%), Positives = 110/175 (62%), Gaps = 1/175 (0%)

Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
             DYD+L+K+++IGDSGVGKS+LL RF  N FS    +TIGV+F  R++ +  + VK QI
Sbjct: 3   ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R ITS YYRG  G ++VYDVT   +F NV+RWL E+  + D ++  +LVGN
Sbjct: 63  WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGN 121

Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           K D      V TEDA  FA +      ETSA E++NVE  F  +   +       
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  304 bits (781), Expect = e-107
 Identities = 66/162 (40%), Positives = 104/162 (64%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            KV L+GD+GVGKS+++ RF  + F      TIG  F T++++ ++++ K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+RA+   YYRG+  A++VYD+T+  TF  ++ W++ELR H   +IV+ + GNK DL  +
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
             V   DAK +A+  +  F+ETSA  ++N+   F E+  +I 
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  305 bits (784), Expect = e-107
 Identities = 69/194 (35%), Positives = 110/194 (56%), Gaps = 11/194 (5%)

Query: 2   AAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI 61
              R   DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +    + 
Sbjct: 14  LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQG 73

Query: 62  ----------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL 111
                     V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L
Sbjct: 74  PNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 133

Query: 112 RGHTDS-NIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
           + +    N  I+L+GNKADL     V+   A+  A++    + ETSA    NVE A   +
Sbjct: 134 QANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193

Query: 171 LTQIYHVVSRKALD 184
           L  I   + +    
Sbjct: 194 LDLIMKRMEQCVEK 207

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  304 bits (782), Expect = e-107
 Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 6/181 (3%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
                        YK+VL GD+ VGKS+ L R  +NEF     +T+GV+F  +++ V+ +
Sbjct: 16  PRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGE 75

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
               Q+WDTAGQER+R+I  +Y+R A G LL+YDVT   +F N+  W+  +       + 
Sbjct: 76  RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP 135

Query: 121 IMLVGNKADLRHLC------AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           IMLVGNKAD+R          V     +  A      F ETSA +  N+  A   +  ++
Sbjct: 136 IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

Query: 175 Y 175
            
Sbjct: 196 K 196

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  304 bits (782), Expect = e-107
 Identities = 79/184 (42%), Positives = 107/184 (58%), Gaps = 2/184 (1%)

Query: 2   AAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI 61
            +   DED     K+++IG+SGVGKS+LL RFT + F  E  +TIGV+F  ++I V+   
Sbjct: 4   GSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK 63

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN-IV 120
            K  IWDTAGQER+R +T +YYRGA G +LVYDVTR  TF  ++ WL EL  +   N IV
Sbjct: 64  AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV 123

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
            MLVGNK D      V   +   FA + +  F+E SA     V+ AF E++ +I      
Sbjct: 124 NMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

Query: 181 KALD 184
              +
Sbjct: 183 WESE 186

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  305 bits (782), Expect = e-106
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 4/198 (2%)

Query: 3   AYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE-FATRSIRVEDKI 61
              + E  +  YK+ LIGD GVGK+  ++R     F     +T+G        +  +  +
Sbjct: 1   GPGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNV 60

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVI 121
           +K  +WDTAGQE+   +   YY GA GA+L +DVT  +T +N+ RW+KE +    +   I
Sbjct: 61  IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI 120

Query: 122 MLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           ++  NK D+++   +S +      + +N  + E SA  + N    F  +         R 
Sbjct: 121 VVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT---GRP 177

Query: 182 ALDIGGDPAALPKGQTIN 199
            L    +    P     +
Sbjct: 178 DLIFVSNVNLEPTEVNYD 195

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  302 bits (776), Expect = e-106
 Identities = 63/175 (36%), Positives = 109/175 (62%), Gaps = 1/175 (0%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           M++     +    +K+V +G+  VGK++L++RF  + F    ++TIG++F ++++ +ED+
Sbjct: 3   MSSGDFG-NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 61

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
            V+ Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F    +W+ ++R    S+++
Sbjct: 62  TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI 121

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           IMLVGNK DL     VSTE+ +  A+  N  F+ETSA    NV+  F  V   + 
Sbjct: 122 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  301 bits (773), Expect = e-106
 Identities = 73/164 (44%), Positives = 108/164 (65%)

Query: 12  YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
             +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
           QERY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           +  AV  ++A+++A+  +  FMETSA  SMNV   F  +  ++ 
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  301 bits (772), Expect = e-105
 Identities = 62/179 (34%), Positives = 103/179 (57%), Gaps = 5/179 (2%)

Query: 3   AYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV 62
           +         ++K+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ ++ + +
Sbjct: 10  SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69

Query: 63  KAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN-IV 120
           K Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W++E + H  +N I 
Sbjct: 70  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 129

Query: 121 IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSAL---ESMNVENAFTEVLTQIYH 176
            +LVGNK DLR    V T+ A+ FA+  +    ETSA    ++ +VE  F  +  ++  
Sbjct: 130 RILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  300 bits (770), Expect = e-105
 Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 1/166 (0%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
            +   K+V++G+  VGKS+++ R+ +  F+ + K TIGV+F  R I+V D+ V+  +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQE + AIT AYYRGA   +LV+  T   +FE +  W +++      +I   LV NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           L     +  E+A+  A+R    F  TS  E +NV   F  +  +  
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  301 bits (773), Expect = e-105
 Identities = 67/212 (31%), Positives = 110/212 (51%), Gaps = 11/212 (5%)

Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
                L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + V+D++V  QIW
Sbjct: 3   SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIML 123
           DTAGQER++++  A+YRGA   +LV+DVT   TF+ ++ W  E           N   ++
Sbjct: 63  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122

Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183
           +GNK DL +    +         + N  + ETSA E++NVE AF  +        +   L
Sbjct: 123 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182

Query: 184 DIGGDPAALPKGQTINVGGKDDVSAVKKVGCC 215
                       + I +   +   A  +   C
Sbjct: 183 Y-------NEFPEPIKLDKNERAKASAESCSC 207

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  297 bits (762), Expect = e-104
 Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 1/169 (0%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++ +  K VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
           GQER+R IT+AYYRGA+G +LVYD+T   TF N+++W K +  H +    ++LVGNK+D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVS 179
                V+ +  +A A+     F+E+SA    NV   F  +   I   + 
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  297 bits (763), Expect = e-104
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 9/189 (4%)

Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTR--NEFSLESKSTIGVEFATRSIRVEDKIVKA 64
           D       KV ++G++ VGKS L+S FT   ++F  +   T GVE     + + D  V  
Sbjct: 14  DITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV 73

Query: 65  QIW--DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR---GHTDSNI 119
           +++  DTAG + Y+   S Y+ G   A+LV+DV+   +FE+ + W + L+      +  +
Sbjct: 74  ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL 133

Query: 120 VIMLVGNKADLRHL-CAVSTEDAKAFAERENTFFMETSA-LESMNVENAFTEVLTQIYHV 177
             +LV NK DL      V  + A+ +A      F + SA     + +  F  + T  Y  
Sbjct: 134 RAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRN 193

Query: 178 VSRKALDIG 186
              K     
Sbjct: 194 YEDKVAAFQ 202

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  293 bits (752), Expect = e-102
 Identities = 65/172 (37%), Positives = 102/172 (59%), Gaps = 6/172 (3%)

Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
               L+KV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + + V+   V  QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLV 124
           TAGQER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 125 GNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVENAFTEVLTQIY 175
           GNK D+     VSTE+A+A+        + ETSA ++ NV  AF E + ++ 
Sbjct: 123 GNKIDISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  290 bits (745), Expect = e-101
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 6/197 (3%)

Query: 3   AYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV 62
           A  A  +    +K+VL+GD G GK+  + R    EF  +  +T+GVE            +
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 64

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM 122
           K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L    + NI I+
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIV 123

Query: 123 LVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKA 182
           L GNK D++         +  F  ++N  + + SA  + N E  F  +  ++        
Sbjct: 124 LCGNKVDIKDR--KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI---GDPN 178

Query: 183 LDIGGDPAALPKGQTIN 199
           L+    PA  P    ++
Sbjct: 179 LEFVAMPALAPPEVVMD 195

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  283 bits (726), Expect = 1e-98
 Identities = 63/175 (36%), Positives = 102/175 (58%), Gaps = 7/175 (4%)

Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQI 66
                + KV+++GDSGVGK++L+ R+  +++S + K+TIG +F T+ + V+ DK+   Q+
Sbjct: 3   SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIM 122
           WDTAGQER++++  A+YRGA   +LVYDVT   +FEN++ W  E   H +         +
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122

Query: 123 LVGNKADLRHLC-AVSTEDAKAFAERENT-FFMETSALESMNVENAFTEVLTQIY 175
           ++GNK D       VS + A+  A+         TSA  ++NV+ AF E+     
Sbjct: 123 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  265 bits (680), Expect = 2e-91
 Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 40/207 (19%)

Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA---- 64
           +    YK VL+G+S VGKS+++ R T++ F   + +TIG  F T  + + D  +K     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 65  ---------------------------------QIWDTAGQERYRAITSAYYRGAVGALL 91
                                             IWDTAGQERY +I   YYRGA  A++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 92  VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF 151
           V+D++   T +  + W+ +L+    SN +I+LV NK D      V   + + +A+  N  
Sbjct: 123 VFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKF-QVDILEVQKYAQDNNLL 179

Query: 152 FMETSALESMNVENAFTEVLTQIYHVV 178
           F++TSA    N++N F  +  +IY  +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYKNI 206

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  253 bits (648), Expect = 1e-86
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 2/177 (1%)

Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
               D ++KV+L+G+SGVGKS L   F   +     +     +   R I V+ + V   +
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76

Query: 67  WDTAGQERYRA-ITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL-RGHTDSNIVIMLV 124
           +D   Q      +     +     L+V+ VT   +F  V   L  L  G    ++ ++LV
Sbjct: 77  YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136

Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           GNK+DL     VS E+ +  A   +   +ETSA    N    F   + QI     R 
Sbjct: 137 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  245 bits (628), Expect = 5e-84
 Identities = 65/165 (39%), Positives = 96/165 (58%), Gaps = 3/165 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            K+VL+G++ VGKS+++ RF  N+F+   + TIG  F T+ + + +  VK +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+ ++   YYR A  AL+VYDVT+  +F     W+KEL      +I+I LVGNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 134 C---AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
                V+ E+ +  AE +   F ETSA    NV + F  +  +I 
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  240 bits (616), Expect = 4e-82
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 2/164 (1%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           ++KV+L+G+SGVGKS L   F   +     +     +   R I V+ + V   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 73  ERYRA-ITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL-RGHTDSNIVIMLVGNKADL 130
                 +     +     L+V+ VT   +F  V   L  L  G    ++ ++LVGNK+DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                VS E+ +  A   +   +ETSA    N    F   + QI
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  235 bits (601), Expect = 2e-79
 Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 15/217 (6%)

Query: 1   MAAYRA-DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED 59
           MAA +   ++   L+KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++ 
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59

Query: 60  KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSN 118
           + V+  I DTAGQE Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119

Query: 119 IVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVV 178
           +  +LVGNK+DL     VS E+AK  AE+ N  ++ETSA    NV+  F +++ +I    
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179

Query: 179 SRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCC 215
              + +  G               +  ++   +  CC
Sbjct: 180 MEDSKEKNGKK------------KRKSLAKRIRERCC 204

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  234 bits (599), Expect = 3e-79
 Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 2/172 (1%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
              ++   L+KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++ + V+ 
Sbjct: 10  GGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQI 68

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIML 123
            I DTAGQE Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +L
Sbjct: 69  DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 128

Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           VGNK+DL     VS E+AK  AE+ N  ++ETSA    NV+  F +++ +I 
Sbjct: 129 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 180

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  233 bits (596), Expect = 6e-79
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 4/166 (2%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           LY+VVL+GD GVGK++L S F   +   +    +G +   R++ V+ +     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 73  ERYRAITS--AYYRGAVGALLVYDVTRHVTFENVERWLKEL-RGHTDSNIVIMLVGNKAD 129
           E+     S  +  +G    ++VY +    +FE+      +L R H   ++ I+LVGNKAD
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           L     VS E+ +A A   +  F+ETSA    NV   F  V+ Q+ 
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR 168

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  231 bits (590), Expect = 1e-77
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 7/185 (3%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDK--- 60
            + E  +  Y+VVLIG+ GVGKS L + F     S++S    +G +   R++ V+ +   
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL-RGHTDSNI 119
           I+   +W+  G+  +  +     +     L+VY +T   +FE       +L R     +I
Sbjct: 89  IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI 146

Query: 120 VIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVS 179
            I+LVGNK+DL     VS  + +A A   +  F+ETSA    NV+  F  ++ Q+     
Sbjct: 147 PIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD 206

Query: 180 RKALD 184
            K  +
Sbjct: 207 SKEKN 211

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  228 bits (583), Expect = 4e-77
 Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 2/164 (1%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++ + V+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
               VS E+AK  A++ N  ++ETSA    NV+  F +++ +I 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  222 bits (567), Expect = 2e-74
 Identities = 32/175 (18%), Positives = 76/175 (43%), Gaps = 11/175 (6%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSL--ESKSTIGVEFATRSIRVEDK---IVKAQIWD 68
            K++++G++G GK+ LL +  + + S      +T+G++     I++ DK    +   +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
            AG+E + +    +       L VYD++      + ++ WL  ++     +  ++LVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTH 121

Query: 128 ADL---RHLCAVSTEDAKAFAEREN-TFFMETSALESMNVENAFTEVLTQIYHVV 178
            D+   +   A  ++  K    +       +   + +    +A  ++   I +  
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  222 bits (567), Expect = 2e-74
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 7/179 (3%)

Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDK---IVK 63
           E     Y+VVLIG+ GVGKS L + F     S++S    +G +   R++ V+ +   I+ 
Sbjct: 1   EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60

Query: 64  AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIM 122
             +W+  G+  +  +     +     L+VY +T   +FE       +LR    + +I I+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118

Query: 123 LVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
           LVGNK+DL     VS  + +A A   +  F+ETSA    NV+  F  ++ Q+      K
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  221 bits (566), Expect = 3e-74
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 2/169 (1%)

Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           D      +K+V++G  GVGKS L  +F ++ F  +   TI   + T+   V+    +  I
Sbjct: 3   DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDI 61

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVG 125
            DTAGQE + A+   Y R   G LLV+ +    +F  V +   + LR     +  ++LVG
Sbjct: 62  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121

Query: 126 NKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           NKADL     V   +A AF    +  + E SA   +NV+ AF +++  +
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  220 bits (562), Expect = 6e-74
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           +YKV+L+G  GVGKS L   F   E   E+    G  +  RSI V+ +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLR 131
           +  R +           ++VY VT   +FE       +LR    + ++ I+LVGNK+DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               VS ++ +A A   +  F+ETSA    NV+  F  V+ QI
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  221 bits (565), Expect = 6e-74
 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 2/173 (1%)

Query: 3   AYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV 62
            Y          KVV++G   VGK++L  +F   EFS     T+   + ++ + +     
Sbjct: 14  LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEF 72

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVI 121
              + DTAGQ+ Y  +  ++  G  G +LVY VT   +F+ +E   ++   GH  + + +
Sbjct: 73  HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV 132

Query: 122 MLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           +LVGNKADL     V   + K  AE     FME+SA E+   +  FT+V+ +I
Sbjct: 133 VLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  209 bits (534), Expect = 2e-69
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 3/176 (1%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK 60
           MA      +    YK+V++GD GVGKS L  +F +  F  +   TI   +  +   ++++
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQ 64

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NI 119
                + DTAGQE + A+   Y R   G L+VY VT   +FE+V+R+ + +    D  + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124

Query: 120 VIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES-MNVENAFTEVLTQI 174
            ++LV NK DL HL  V+ +  K  A + N  ++ETSA +  +NV+  F +++  I
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  203 bits (519), Expect = 3e-67
 Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 2/166 (1%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
                K+ ++G   VGKS+L  +F   +F      TI   F T+ I V  +    Q+ DT
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKA 128
           AGQ+ Y      Y     G +LVY VT   +FE ++    + L       I IMLVGNK 
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121

Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL     +S E+ KA AE  N  F+E+SA E+    + F  ++ + 
Sbjct: 122 DLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  201 bits (514), Expect = 3e-66
 Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           +    Y+VV+ G  GVGKS+L+ RF +  F      TI   +  + I  +  +   QI D
Sbjct: 4   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITD 62

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS--NIVIMLVGN 126
           T G  ++ A+           +LV+ VT   + E +    K +     S  +I +MLVGN
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122

Query: 127 KADL--RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           K D   R    V T +A+A A+     FMETSA  + NV+  F E+LT  
Sbjct: 123 KCDETQR---EVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE 169

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  200 bits (510), Expect = 5e-66
 Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 7/164 (4%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADL-- 130
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS ++ ++LVGNK+DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           R    V +  A+  A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 R---TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  199 bits (509), Expect = 8e-66
 Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YKVV++G  GVGKS L  +F    F  +   TI  +F  + I V+      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
           ++ ++   Y +   G +LVY +    +F++++    + +R      + ++LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              VS+ + +A AE     FMETSA     V+  F E++ Q+
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  199 bits (509), Expect = 1e-65
 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 3/163 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           Y+V + G  GVGKS+L+ RF +  F      T+   +  + I  +  I   QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS--NIVIMLVGNKADLR 131
           ++ A+           +LVY +T   + E ++   +++        +I IMLVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               V + +A+A A      FMETSA  + NV+  F E+L   
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  195 bits (499), Expect = 5e-64
 Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 7/164 (4%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADL-- 130
            Y A+   Y R   G L V+ +    +F ++  + ++++   DS ++ ++LVGNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           R    V T+ A   A+     F+ETSA     VE+AF  ++ +I
Sbjct: 141 R---TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  195 bits (497), Expect = 9e-64
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 7/164 (4%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + + ++ +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADL-- 130
            Y A+   Y R   G L V+ +    +FE++  + ++  R     ++ ++LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           R    V T+ A+  A      F+ETSA     V++AF  ++ +I
Sbjct: 124 R---TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  192 bits (491), Expect = 4e-63
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +  F  +   TI   +  + + V+ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   ++ LR     ++ ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 133 LCAVSTEDAKAFAER-ENTFFMETSALESMNVENAFTEVLTQI 174
              V  E  +  A +  N  F+E+SA   +NV   F +++ QI
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  192 bits (491), Expect = 1e-62
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
                K+ + G +GVGKS L+ RF    F  E   T+   +      ++D++V  +I DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDT 83

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKA 128
           AGQE        + R   G +LVYD+T   +FE V              N+ ++LVGNKA
Sbjct: 84  AGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142

Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALES-MNVENAFTEVLTQI 174
           DL H   VSTE+ +  A      F E SA     N+   F E+  ++
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  192 bits (489), Expect = 1e-62
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 6/168 (3%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
                + ++G  G GKS L  +F    F  E    +   + +    V+ + V  ++ DTA
Sbjct: 19  PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTA 77

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGH---TDSNIVIMLVGNK 127
             +  R     Y   A   L+VY V    +F++   +L+ L  H   T  +I  +L+GNK
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136

Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESM-NVENAFTEVLTQI 174
            D+     V+  +  A A R    F E SA     +V++ F E + + 
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  198 bits (504), Expect = 6e-61
 Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 12/184 (6%)

Query: 1   MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI----- 55
             +      +    KV LIGD   GK++LL +     F  +   T G+   T+       
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 56  ---RVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR 112
                E K      WD  GQE   A    +   +   +L+ D     T  N   WL+ + 
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE 145

Query: 113 GHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172
            +      +++V NK D      +  +            F   S      VE+    + +
Sbjct: 146 KYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204

Query: 173 QIYH 176
            + H
Sbjct: 205 AVLH 208

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  176 bits (450), Expect = 9e-57
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            KV ++G+   GKS L+ R+    +  + +S  G  F  + I V+ +     I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
             +     +       + V+ +   ++F+ V  +   L    ++  + ++LVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 133 LC--AVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
                +    A+  +       + ET A   +NVE  F +V  ++
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  173 bits (441), Expect = 2e-55
 Identities = 36/168 (21%), Positives = 72/168 (42%), Gaps = 13/168 (7%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
             ++ ++GD+  GKS+L+ RF    +    + T   ++  + + V+ +     I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE---LRGHTDSNIVIMLVG--NK 127
              +     +   A   + V+ +    +F+ V R   +   LRG     + + LVG  ++
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 128 ADLRHLCAVSTEDAKAF-AERENTFFMETSALESMNVENAFTEVLTQI 174
                   V    A+A  A+ +   + ET A   +NV+  F EV  ++
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  157 bits (398), Expect = 9e-49
 Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 6   ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ 65
             E+     K+V++GD  VGK+ LL  F++ E       T+   F+   ++ +++     
Sbjct: 16  KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILH 74

Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLV 124
           +WDTAGQE Y  +    Y  +   LL + V    +F+N+  +W  E++ + D     +LV
Sbjct: 75  LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLV 133

Query: 125 GNKADLRH--LCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
           G K DLR      V+ ++     ++     ++E S++  + +   F +
Sbjct: 134 GLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  144 bits (366), Expect = 4e-44
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 14/167 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V    V   +WDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQED 68

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    YRGA   +L + +    ++ENV ++W+ EL+ +    + I+LVG K DLR  
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDD 127

Query: 133 ---------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
                       ++T   +   +      ++E S+    NV+  F  
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  144 bits (364), Expect = 2e-43
 Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 16/169 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KVVL+GD G GK++LL  F    F      T+   +    ++V+ K V   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQDD 94

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +   +Y  A   LL +DVT   +F+N+  RW  E+       + I++VG K DLR  
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKD 153

Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
                      L  V+    +  A       ++E SA    NV   F E
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  142 bits (361), Expect = 5e-43
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ V+ +IV   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR- 131
            Y  +    YRGA   +L + +    ++ENV ++W+ ELR     N+ I+LVG K DLR 
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRD 127

Query: 132 -------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQIYHVVSRK 181
                  H   +++   +   ++     ++E S+    NV+  F   +  +     RK
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  139 bits (353), Expect = 5e-42
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 16/179 (8%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
           R         K+V++GD   GK+ LL  F++++F      T+  E     I V+ K V+ 
Sbjct: 17  RGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVEL 75

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIML 123
            +WDTAGQE Y  +    Y      L+ + +    + EN+ E+W  E++     N+ I+L
Sbjct: 76  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIIL 134

Query: 124 VGNKADLRH------------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
           VGNK DLR                V +E+ +  A R + F ++E SA     V   F  
Sbjct: 135 VGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 193

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  139 bits (353), Expect = 7e-42
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 16/169 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F+++EF      T+   +    I V+ K V+  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + V    + EN+ E+W+ E++     N+ I+LV NK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSD 144

Query: 133 -----------LCAVSTEDAKAFAEREN-TFFMETSALESMNVENAFTE 169
                         V T+D +A A R     ++E SA     V   F  
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  136 bits (343), Expect = 2e-40
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 16/169 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ V+ K V   +WDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDD 149

Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
                      L  ++     A A+      ++E SAL    ++  F E
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  136 bits (343), Expect = 2e-40
 Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 17/180 (9%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
             D + +   K+V++GDS  GK+ LL  F ++ F      T+   +   S  ++ + ++ 
Sbjct: 20  HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIEL 78

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIML 123
            +WDT+G   Y  +    Y  +   L+ +D++R  T ++V ++W  E++     N  ++L
Sbjct: 79  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLL 137

Query: 124 VGNKADLRH------------LCAVSTEDAKAFAERENTF-FMETSALESMN-VENAFTE 169
           VG K+DLR                VS +     A++     ++E SAL+S N V + F  
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 197

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  132 bits (334), Expect = 3e-39
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 17/170 (10%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F ++ F      T+   +   S  ++ + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y  +   L+ +D++R  T ++V ++W  E++     N  ++LVG K+DLR  
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126

Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMN-VENAFTE 169
                         VS +     A++     ++E SAL+S N V + F  
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  132 bits (333), Expect = 7e-39
 Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 16/182 (8%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            K VL+GD  VGK++L+  +T N +  E   T   +  +  + V+ + V+ Q+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQD 79

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH 132
            +  +    Y      LL + V    +F+NV E+W+ E+R H      I+LVG ++DLR 
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRE 138

Query: 133 ------------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQIYHVVS 179
                          V  E AK  AE      ++E SAL   N++  F   +        
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198

Query: 180 RK 181
            +
Sbjct: 199 TQ 200

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  129 bits (327), Expect = 3e-38
 Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 16/169 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ V+ K V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y     +L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124

Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
                      L  ++     A A+      ++E SAL    ++  F E
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  127 bits (321), Expect = 5e-37
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 17/180 (9%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
           RA +      K+VL+GD   GK+ +L    ++ +      T+   +    +  E++ V+ 
Sbjct: 19  RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVEL 77

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIML 123
            +WDT+G   Y  +    Y  +   LL +D++R  T ++  ++W  E+  +   +  ++L
Sbjct: 78  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLL 136

Query: 124 VGNKADLRH------------LCAVSTEDAKAFAERENTF-FMETSALESM-NVENAFTE 169
           +G K DLR                +S E   A A++     ++E SA  S  ++ + F  
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  124 bits (314), Expect = 4e-36
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 16/169 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +  + F  E   T+  +    S+ V  K     ++DTAGQE 
Sbjct: 20  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 78

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + V    +F+NV E W+ EL+ +   N+  +L+G + DLR  
Sbjct: 79  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDD 137

Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
                         +  E  +  A+      ++E SAL    ++  F E
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  108 bits (271), Expect = 3e-29
 Identities = 46/220 (20%), Positives = 76/220 (34%), Gaps = 66/220 (30%)

Query: 20  GDSGVGKSNLLSRFTR---NEFSLESKSTIG-VEFATRSI-------------RVEDKI- 61
           G  G+GKS L +RF R   +EF L+  S +   +F  R +              +ED + 
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 62  VKAQIW-------DTAGQERYRAITSAYYRGAV--------------------------- 87
            K  I        D   Q         Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 88  ----------GALLVYDVTRHV--TFENVERWLKELRGHTDS-NIVIMLVGNKADLRHLC 134
                     G LL  DV+R +   F++  +++  L          I++V  K D     
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            +      A + ++N   +ETSA  ++NV+ AF+ ++  I
Sbjct: 215 YIRDAHTFALS-KKNLQVVETSARSNVNVDLAFSTLVQLI 253

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 98.9 bits (246), Expect = 7e-25
 Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 16/179 (8%)

Query: 5   RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
             DE    L K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ V+ K V  
Sbjct: 147 NIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNL 205

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIML 123
            +WDTAG E Y  +    Y      L+ + +    +F +V  +W  E+R H   N  I+L
Sbjct: 206 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIIL 264

Query: 124 VGNKADLRH------------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169
           VG K DLR             L  ++     A A+      ++E SAL    ++  F E
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 87.5 bits (217), Expect = 9e-22
 Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 19/186 (10%)

Query: 14  YKVVLIGDSGVGKSNLL----------SRFTRNEFSLESKSTIGVEFATRSIR-VEDKIV 62
           +K+V  G    GK+  L           +      + E + T+  +F    I  V+    
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLK-----ELRGHTDS 117
           +  ++   GQ  Y A      RG  G + V D   +    N E            G T  
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 118 NIVIMLVGNKADLRHLCAVSTED-AKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
           ++ I++  NK DL    A+  E              +E  A E   V     EV   +  
Sbjct: 135 DVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192

Query: 177 VVSRKA 182
            V+  +
Sbjct: 193 RVAGGS 198

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 66.9 bits (163), Expect = 5e-14
 Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 24/183 (13%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES---KSTIGVEFATRSIRVEDKIVKAQIW 67
               +++L+G    GKS++           E+   +ST  +     S       V  QIW
Sbjct: 18  GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISN---SSFVNFQIW 74

Query: 68  DTAGQERYRAITS---AYYRGAVGALLVYDVTRHVT--FENVERWLKELRGHTDSNIVIM 122
           D  GQ  +   T      +RG    + V D           +   + +     + ++   
Sbjct: 75  DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFE 133

Query: 123 LVGNKADL----------RHLCAVSTED-AKAFAERENTFFMETSALESMNVENAFTEVL 171
           +  +K D           R +   + +D A A  E+ +  F  TS  +  ++  AF++V+
Sbjct: 134 VFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFEAFSKVV 192

Query: 172 TQI 174
            ++
Sbjct: 193 QKL 195

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 62.7 bits (152), Expect = 5e-12
 Identities = 34/182 (18%), Positives = 75/182 (41%), Gaps = 25/182 (13%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESK---STIGVEFATRSIRVEDKIVKAQIWDTAG 71
           K++L+G SG GKS++ S    N  + +++   +TI VE +          +   +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDCGG 61

Query: 72  QERYRAIT-----SAYYRGAVGALLVYDVTRHVTFENVERWLKELR--GHTDSNIVIMLV 124
           Q+ +            ++     + V+DV      +++E + K L+       +  I ++
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 125 GNKADL----------RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            +K DL          + +    +E +  F       F  TS  +  ++  A+++++  +
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP-TSIWD-ESLYKAWSQIVCSL 179

Query: 175 YH 176
             
Sbjct: 180 IP 181

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAG 71
            ++ L+G    GK+  ++     +F+ +   T+G  +       ++    V  ++WD  G
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR------KITKGNVTIKLWDIGG 76

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
           Q R+R++   Y RG    + + D       E  +  L  L        I ++++GNK DL
Sbjct: 77  QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136

Query: 131 RHLCAVSTED 140
               A+  ++
Sbjct: 137 PG--ALDEKE 144

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 17/162 (10%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAG 71
            +++++G  G GK+ +L R    E    +K TIG  VE       +  K +K  +WD  G
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVE------TLSYKNLKLNVWDLGG 71

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
           Q   R     YY      + V D T         + L  +    +  +  +++  NK D 
Sbjct: 72  QTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131

Query: 131 RHLCAVSTED-AKAFAERE----NTFFMETSALESMNVENAF 167
               A+S  + +K     E    +   + +SA++   +    
Sbjct: 132 PG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 30/169 (17%), Positives = 68/169 (40%), Gaps = 17/169 (10%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAG 71
            +++++G    GK+ +L +    E    +  TIG  VE       VE K +   +WD  G
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYKNICFTVWDVGG 82

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
           Q++ R +   Y++   G + V D       +     L+++    +  + V+++  NK D+
Sbjct: 83  QDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142

Query: 131 RHLCAVSTED-AKAFAERE----NTFFMETSALESMNVENAFTEVLTQI 174
            +  A+   +       +       +   T A +   + +    +  ++
Sbjct: 143 PN--AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 17/162 (10%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAG 71
            +++++G  G GK+ +L R    E    +  TIG  VE       V  K +K Q+WD  G
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVE------TVTYKNLKFQVWDLGG 60

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
               R     YY      + V D          +  L  +    +    ++++  NK D+
Sbjct: 61  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120

Query: 131 RHLCAVSTED-AKAFAERE----NTFFMETSALESMNVENAF 167
               A+++ + A +              +TSA +   ++ A 
Sbjct: 121 EQ--AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 17/169 (10%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAG 71
           +KV+++G    GK+ +L +F+ NE    +  TIG  VE       +     +  +WD  G
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE------EIVINNTRFLMWDIGG 69

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
           QE  R+  + YY      ++V D T           L ++  H D     +++  NK D+
Sbjct: 70  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129

Query: 131 RHLCAVSTED-AKAFAERE----NTFFMETSALESMNVENAFTEVLTQI 174
           +    ++  + ++                  AL    +      +++++
Sbjct: 130 KE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 17/162 (10%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAG 71
            +V+++G    GK+++L R    +    +  T+G  +E       ++ K +  ++WD  G
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLE------TLQYKNISFEVWDLGG 75

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
           Q   R     Y+      + V D T        +  L  L    +    ++++  NK DL
Sbjct: 76  QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135

Query: 131 RHLCAVSTED-AKAFAERE----NTFFMETSALESMNVENAF 167
               A S  + A+              +++S+     +    
Sbjct: 136 PD--AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 17/162 (10%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAG 71
           +KV+++G    GK+ +L +F+ NE    +  TIG  VE       +     +  +WD  G
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE------EIVINNTRFLMWDIGG 74

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
           QE  R+  + YY      ++V D T           L ++  H D     +++  NK D+
Sbjct: 75  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134

Query: 131 RHLCAVSTED-AKAFAERE----NTFFMETSALESMNVENAF 167
           +    ++  + ++                  AL    +    
Sbjct: 135 KE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 17/169 (10%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAG 71
            +++++G    GK+ +L +F   +       T+G  ++       +E +  K  IWD  G
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK------TLEHRGFKLNIWDVGG 71

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
           Q+  R+    Y+    G + V D       ++ +R L+ L      +   +++  NK DL
Sbjct: 72  QKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

Query: 131 RHLCAVSTED-AKAFAERE----NTFFMETSALESMNVENAFTEVLTQI 174
               A+S     +A         +      SA+   ++      +L  I
Sbjct: 132 PG--ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 19/169 (11%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAGQ 72
           +++++G    GK+ +L +    E    +  TIG  VE       VE K +   +WD  GQ
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYKNISFTVWDVGGQ 54

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLR 131
           ++ R +   Y++   G + V D             L  +    +  + V+++  NK DL 
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114

Query: 132 HLCAVSTED------AKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           +  A++  +        +   R N +   T A     +      +  Q+
Sbjct: 115 N--AMNAAEITDKLGLHSLRHR-NWYIQATCATSGDGLYEGLDWLSNQL 160

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 19/165 (11%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIG--VEFATRSIRVEDKIVKAQIWDTA 70
             V+ +G    GK+ ++++   +    ++   TIG  +E      + +   +   ++D +
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE------KFKSSSLSFTVFDMS 75

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD---SNIVIMLVGNK 127
           GQ RYR +   YY+     + V D +  +     +  L  L  H D     I I+   NK
Sbjct: 76  GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANK 135

Query: 128 ADLRHLCAVSTED-AKAFAERE----NTFFMETSALESMNVENAF 167
            DLR   AV++   ++                + A++   ++   
Sbjct: 136 MDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 17/162 (10%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAG 71
            +++L+G    GK+ LL +    + S     T G  ++       V+ +  K  +WD  G
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIK------SVQSQGFKLNVWDIGG 69

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
           Q + R    +Y+      + V D      FE   + L EL      S + +++  NK DL
Sbjct: 70  QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129

Query: 131 RHLCAVSTED-AKAFAERE----NTFFMETSALESMNVENAF 167
               A    + A+                 SAL    V++  
Sbjct: 130 LT--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 13/153 (8%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAG 71
            K+V +G    GK+ LL     +    +   T+    E       +    +    +D  G
Sbjct: 26  GKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE------ELTIAGMTFTTFDLGG 78

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
             + R +   Y     G + + D   H      +  L  L      +N+ I+++GNK D 
Sbjct: 79  HIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138

Query: 131 RHLCAVSTED-AKAFAERENTFFMETSALESMN 162
               A+S E   + F     T    + +L+ +N
Sbjct: 139 PE--AISEERLREMFGLYGQTTGKGSVSLKELN 169

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 29/182 (15%), Positives = 68/182 (37%), Gaps = 24/182 (13%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK--IVKAQIWDTAGQE 73
           V+L+G    GKS++      N   ++   T+ +E +T +  +E    ++   + +  GQ 
Sbjct: 2   VLLMGVRRCGKSSICKVVFHN---MQPLDTLYLE-STSNPSLEHFSTLIDLAVMELPGQL 57

Query: 74  RYRA---ITSAYYRGAVGALLVYDVTRHVT--FENVERWLKELRGHTDSNIVIMLVGNKA 128
            Y      +   ++     + V D          N+   ++      + +I I ++ +K 
Sbjct: 58  NYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKV 116

Query: 129 DL----------RHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQIYHV 177
           D           R +   + E+            F  TS  +  ++  AF+ ++ ++   
Sbjct: 117 DGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDH-SIYEAFSRIVQKLIPE 175

Query: 178 VS 179
           +S
Sbjct: 176 LS 177

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 24/140 (17%), Positives = 56/140 (40%), Gaps = 9/140 (6%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
             V+ +G    GK+ L  R    ++  +++++I    A   +   ++     + D  G E
Sbjct: 8   RAVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHE 65

Query: 74  RYRA-ITSAYYRGAVGALLVYD-VTRHVTFENVERWLKELRGHTD---SNIVIMLVGNKA 128
             R  +   +   A   + V D        ++V  +L ++   +    ++  +++  NK 
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125

Query: 129 DLRHLCAVSTEDAKAFAERE 148
           D+    A S +  +   E+E
Sbjct: 126 DIAM--AKSAKLIQQQLEKE 143

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIW 67
                +++++G    GK+ +L +    E    +  TIG  VE       VE K +   +W
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYKNISFTVW 214

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGN 126
           D  GQ++ R +   Y++   G + V D             L  +    +  + V+++  N
Sbjct: 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 274

Query: 127 KADLRHLCAVSTED 140
           K DL +  A++  +
Sbjct: 275 KQDLPN--AMNAAE 286

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 49.7 bits (119), Expect = 8e-08
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 17/143 (11%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
            +++ G    GK++LL+  T +     +  +     +      +       + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVR-PTVVSQE-PLSA----ADYDGSGVTLVDFPGHVK 103

Query: 75  YRAITSAYYRGAVGAL--LVYDV---TRHVTFENVERWLKELRGHTDS----NIVIMLVG 125
            R   S Y +     +  L++ V              +L ++   T+S     I I++  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 126 NKADLRHLCAVSTEDAKAFAERE 148
           NK++L    A      K   E E
Sbjct: 164 NKSELFT--ARPPSKIKDALESE 184

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 17/142 (11%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75
           +++ G    GK++LL+  T +     +  +     +      +       + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVR-PTVVSQE-PLSA----ADYDGSGVTLVDFPGHVKL 68

Query: 76  RAITSAYYRGAVGAL--LVYDV---TRHVTFENVERWLKELRGHTDS----NIVIMLVGN 126
           R   S Y +     +  L++ V              +L ++   T+S     I I++  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 127 KADLRHLCAVSTEDAKAFAERE 148
           K++L    A      K   E E
Sbjct: 129 KSELFT--ARPPSKIKDALESE 148

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRVEDKIVKAQIWDTAG 71
            K++ +G    GK+ LL     +  +   + T     E       +    +K   +D  G
Sbjct: 24  GKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE------ELAIGNIKFTTFDLGG 76

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
             + R +   Y+    G + + D      F+     L  L    +  ++  +++GNK D 
Sbjct: 77  HIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA 136

Query: 131 RHLCAVSTED 140
            +  AVS  +
Sbjct: 137 PN--AVSEAE 144

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 39/246 (15%), Positives = 83/246 (33%), Gaps = 63/246 (25%)

Query: 6   ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE-FATRSIRVEDKIVKA 64
           + E+ D++              + +S   R  ++L SK    V+ F    +R+  K + +
Sbjct: 47  SKEEIDHIIMS----------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 65  QIWDTAGQERYRA---ITSAY--YR----GAVGALLVYDVTRHVTFENVERWLKELRGHT 115
            I     +   R    +T  Y   R            Y+V+R   +  + + L ELR   
Sbjct: 97  PI-----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA- 150

Query: 116 DSNIVI--ML-VGNKADLRHLCAVSTEDAKAFAER--ENTFFMETSALESMNVENAFTEV 170
             N++I  +L  G K  +    A+    +     +     F++    L++ N      E+
Sbjct: 151 -KNVLIDGVLGSG-KTWV----ALDVCLSYKVQCKMDFKIFWLN---LKNCNSPETVLEM 201

Query: 171 LTQIYHVVSRKALDIGGDPAALPKGQTINVGGK-----------------DDVSAVK--- 210
           L ++ + +         D ++  K +  ++  +                  +V   K   
Sbjct: 202 LQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 211 --KVGC 214
              + C
Sbjct: 261 AFNLSC 266

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 28/183 (15%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV---EDKIVKAQIWDT 69
           +  VV+ G   VGKS LL   T  +  + S       F TR I V   ED   + QI DT
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASY-----PFTTRGINVGQFEDGYFRYQIIDT 221

Query: 70  AG------QER----YRAITSAYYRGAVGALLVYDVTRH--VTFENVERWLKELRGHTDS 117
            G       ER     +AI +  Y G +  + ++D + H     E      +E+ G    
Sbjct: 222 PGLLDRPISERNEIEKQAILALRYLGNL-IIYIFDPSEHCGFPLEEQIHLFEEVHGEF-K 279

Query: 118 NIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV 177
           ++  ++V NK D+      + +  + F + +    ++ SAL+   ++     V  +I   
Sbjct: 280 DLPFLVVINKIDV--ADEENIKRLEKFVKEKGLNPIKISALKGTGID----LVKEEIIKT 333

Query: 178 VSR 180
           +  
Sbjct: 334 LRP 336

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 19/125 (15%), Positives = 31/125 (24%), Gaps = 9/125 (7%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI--WD 68
             +  V + G++G GKS+ ++         E  +  GV   T             +  WD
Sbjct: 67  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126

Query: 69  TAGQERYRAITSAYYRGAV---GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVG 125
             G          Y            +         +N     K +            V 
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFK-KNDIDIAKAISMM---KKEFYFVR 182

Query: 126 NKADL 130
            K D 
Sbjct: 183 TKVDS 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.98
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.98
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.98
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.88
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.88
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.88
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.87
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.86
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.86
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.84
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.84
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.83
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.83
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.82
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.8
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.79
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.79
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.78
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.78
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.78
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.76
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.76
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.75
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.74
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.69
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.69
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.69
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.67
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.66
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.64
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.64
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.62
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.62
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.61
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.59
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.57
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.54
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.54
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.53
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.53
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.44
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.44
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.35
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.34
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.29
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.14
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.07
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.01
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.0
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.0
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.97
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.97
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.85
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.8
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.8
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.65
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.59
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.57
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.5
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.38
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.33
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.33
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.32
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.24
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.21
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.99
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.99
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.79
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.76
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.53
2xxa_A	433	Signal recognition particle protein; protein trans	97.52
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.46
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.43
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.42
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.33
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.31
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.28
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.27
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.27
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.27
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.26
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.25
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.24
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.22
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.2
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.2
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.18
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.18
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.17
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.1
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.09
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.09
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.08
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.08
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.07
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.05
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.04
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.04
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.03
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.03
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.03
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.02
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.02
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.0
1g6h_A	257	High-affinity branched-chain amino acid transport	97.0
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.0
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.0
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.99
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.99
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.99
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.98
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.98
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.98
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.98
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.98
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.97
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.96
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.95
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.94
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.93
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.93
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.92
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.91
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.91
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.91
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.91
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.9
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.9
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.9
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.89
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.88
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.88
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.88
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.88
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.87
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.87
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.86
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.85
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.85
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.85
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.83
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.83
3co5_A	143	Putative two-component system transcriptional RES	96.83
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.82
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.82
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.81
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.79
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.79
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.79
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.79
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.76
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.75
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.75
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.74
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.74
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.74
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.74
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.73
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.72
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.71
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.7
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.7
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.69
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.68
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.68
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.68
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.67
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.66
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.65
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.65
1via_A	175	Shikimate kinase; structural genomics, transferase	96.65
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.64
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.63
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.63
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.62
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.62
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.62
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.62
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.62
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.62
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.62
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.61
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.61
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.61
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.59
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.59
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.58
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.58
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.57
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.57
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.57
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.57
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.56
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.56
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.54
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.54
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.53
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.53
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.53
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.52
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.51
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.5
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.47
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.47
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.46
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.46
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.46
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.45
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.45
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.44
2og2_A	359	Putative signal recognition particle receptor; nuc	96.43
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.43
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.42
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.42
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.41
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.4
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.4
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.4
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.39
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.39
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.39
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.39
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.38
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.38
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.37
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.36
3uc9_A	233	Increased recombination centers protein 6; rossman	96.36
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.35
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.35
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.34
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.33
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.33
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.32
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.31
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.31
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.31
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.3
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.3
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.29
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.28
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.28
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.24
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.24
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.21
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.21
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.19
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.19
3bos_A	242	Putative DNA replication factor; P-loop containing	96.17
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.15
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.14
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.13
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.12
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.07
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.07
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.05
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.04
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.03
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.02
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.01
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.01
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.01
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.96
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.96
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.95
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.92
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.91
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.89
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.87
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.86
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.86
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.83
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.82
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.81
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.81
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.81
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.8
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.79
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.79
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.79
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.77
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.75
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.75
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.74
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.71
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.71
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.7
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.7
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.69
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.68
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.67
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.64
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.54
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.53
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.51
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.49
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.47
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.47
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.46
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.46
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.45
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.42
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.41
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.39
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.39
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.38
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.38
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.36
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.35
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.32
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.3
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.29
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.28
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.26
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.25
2qgz_A	308	Helicase loader, putative primosome component; str	95.23
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.22
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.21
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.19
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.18
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.18
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.18
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.17
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.15
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.13
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.13
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.12
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.1
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.09
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.08
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.06

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=4.8e-44  Score=266.17  Aligned_cols=170  Identities=35%  Similarity=0.659  Sum_probs=146.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....+||+|+|.+|||||||+++|+.+.|...+.+|.+.++....+..++..+.+.+|||+|+++|..++..+++.+++
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            34457999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      +++|||++++.||+.+..|+..+......+.|++||+||+|+.+.+.++.+++.++++.++++|+++||++|.||+++|+
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~  168 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR  168 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999877778899999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027894          169 EVLTQIYHVV  178 (217)
Q Consensus       169 ~i~~~~~~~~  178 (217)
                      .|.+.+....
T Consensus       169 ~i~~~i~~~~  178 (216)
T 4dkx_A          169 RVAAALPGME  178 (216)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHhhh
Confidence            9998886543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-38  Score=238.61  Aligned_cols=215  Identities=56%  Similarity=0.935  Sum_probs=150.8

Q ss_pred             CccccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhH
Q 027894            1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus         1 ~~~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      |+...-....+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+.
T Consensus         1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (223)
T 3cpj_B            1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS   80 (223)
T ss_dssp             ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred             CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence            44444445567889999999999999999999999998888888888888888888898889999999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      .+++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++
T Consensus        81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  160 (223)
T 3cpj_B           81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS  160 (223)
T ss_dssp             GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence            99999999999999999999999999999888766568999999999999877778888899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhccccCCCCCCC-------CCCCCceee-ecCCCCccCccccCcc
Q 027894          161 MNVENAFTEVLTQIYHVVSRKALDIGGDPA-------ALPKGQTIN-VGGKDDVSAVKKVGCC  215 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~c~  215 (217)
                      .|++++|++|.+.+.+.....+.+++.+++       ..+.++++. +..+...+..++++||
T Consensus       161 ~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  223 (223)
T 3cpj_B          161 ENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC  223 (223)
T ss_dssp             CCHHHHHHHHHHHHTTCC------------------------CCBCC----------------
T ss_pred             CCHHHHHHHHHHHHHHHhhhcccCchhcccccccccccccCCCcccccccccccccccCCCCC
Confidence            999999999999999888777766633111       112345555 3322222345677886

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=7.2e-37  Score=226.16  Aligned_cols=196  Identities=30%  Similarity=0.468  Sum_probs=151.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            445679999999999999999999999988777777766554 4556678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|++++|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988877653 589999999999998777788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCceeeecCCCCccCccccCccCC
Q 027894          168 TEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA  217 (217)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  217 (217)
                      ++|.+.+.+...........            ....+..++.+|++||.|
T Consensus       169 ~~l~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~Cc~~  206 (206)
T 2bov_A          169 FDLMREIRARKMEDSKEKNG------------KKKRKSLAKRIRERCCIL  206 (206)
T ss_dssp             HHHHHHHHHHHHHHC-----------------------------------
T ss_pred             HHHHHHHHHccccccccccC------------cccccchhhccccceecC
Confidence            99999998765433222111            112222344566689987

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=7.4e-37  Score=226.35  Aligned_cols=176  Identities=48%  Similarity=0.817  Sum_probs=160.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            45778999999999999999999999999988888888888888888889988999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998877667899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccC
Q 027894          169 EVLTQIYHVVSRKALD  184 (217)
Q Consensus       169 ~i~~~~~~~~~~~~~~  184 (217)
                      +|.+.+.+........
T Consensus       164 ~l~~~i~~~~~~~~~~  179 (206)
T 2bcg_Y          164 TMARQIKESMSQQNLN  179 (206)
T ss_dssp             HHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHhhcccc
Confidence            9999998877655443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.8e-35  Score=214.32  Aligned_cols=178  Identities=47%  Similarity=0.770  Sum_probs=160.8

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      .+...+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   82 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG   82 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence            34456788999999999999999999999999888888888888888888889988999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      +|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|+++
T Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (186)
T 2bme_A           83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE  162 (186)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence            99999999999999999999999888776667899999999999987777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccc
Q 027894          166 AFTEVLTQIYHVVSRKAL  183 (217)
Q Consensus       166 ~~~~i~~~~~~~~~~~~~  183 (217)
                      +|+++.+.+.+.....+.
T Consensus       163 l~~~l~~~~~~~~~~~~~  180 (186)
T 2bme_A          163 AFVQCARKILNKIESGEL  180 (186)
T ss_dssp             HHHHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHHHhhhcCC
Confidence            999999999987765544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=6.2e-35  Score=214.14  Aligned_cols=175  Identities=47%  Similarity=0.776  Sum_probs=159.9

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      .+..+..+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (196)
T 3tkl_A           10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA   89 (196)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred             CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence            34457789999999999999999999999999888888989999989998999889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      |++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus        90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  169 (196)
T 3tkl_A           90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  169 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998877678999999999999888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 027894          167 FTEVLTQIYHVVSRK  181 (217)
Q Consensus       167 ~~~i~~~~~~~~~~~  181 (217)
                      |++|.+.+.+.....
T Consensus       170 ~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          170 FMTMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999998876544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-35  Score=216.92  Aligned_cols=173  Identities=42%  Similarity=0.750  Sum_probs=157.9

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +...+..+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            34567889999999999999999999999999888888888888888888999889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      |++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++
T Consensus       100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  179 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL  179 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999888776678999999999999877778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027894          167 FTEVLTQIYHVVS  179 (217)
Q Consensus       167 ~~~i~~~~~~~~~  179 (217)
                      |++|.+.+.+...
T Consensus       180 ~~~l~~~i~~~~~  192 (201)
T 2ew1_A          180 FLDLACRLISEAR  192 (201)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=216.73  Aligned_cols=173  Identities=47%  Similarity=0.781  Sum_probs=147.9

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      .++..+..+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus        22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  101 (201)
T 2hup_A           22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS  101 (201)
T ss_dssp             ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred             cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence            34567788999999999999999999999999887777888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVE  164 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  164 (217)
                      +|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++ +++++||+++.|++
T Consensus       102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  181 (201)
T 2hup_A          102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE  181 (201)
T ss_dssp             CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999998876667899999999999987777888999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027894          165 NAFTEVLTQIYHVV  178 (217)
Q Consensus       165 ~~~~~i~~~~~~~~  178 (217)
                      ++|++|.+.+.+..
T Consensus       182 ~l~~~l~~~i~~~~  195 (201)
T 2hup_A          182 EAFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1e-35  Score=216.18  Aligned_cols=173  Identities=45%  Similarity=0.793  Sum_probs=129.3

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +.+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (183)
T 2fu5_C            4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   83 (183)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence            45788999999999999999999999988877777888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  163 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  163 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988876657899999999999987777888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 027894          169 EVLTQIYHVVSRK  181 (217)
Q Consensus       169 ~i~~~~~~~~~~~  181 (217)
                      +|.+.+.+...+.
T Consensus       164 ~l~~~i~~~~~~~  176 (183)
T 2fu5_C          164 TLARDIKAKMDKN  176 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc
Confidence            9999998876544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=5.5e-35  Score=211.20  Aligned_cols=173  Identities=51%  Similarity=0.846  Sum_probs=154.5

Q ss_pred             ccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhh
Q 027894            4 YRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYY   83 (217)
Q Consensus         4 ~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   83 (217)
                      .......+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++
T Consensus         6 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   85 (179)
T 1z0f_A            6 ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY   85 (179)
T ss_dssp             -----CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHH
T ss_pred             CCCccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHh
Confidence            33445677889999999999999999999999998887778888888888888888889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894           84 RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (217)
                      +.+|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||+++.|+
T Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  165 (179)
T 1z0f_A           86 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENV  165 (179)
T ss_dssp             HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999999999888776678999999999999877778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          164 ENAFTEVLTQIYH  176 (217)
Q Consensus       164 ~~~~~~i~~~~~~  176 (217)
                      +++|+++.+.+.+
T Consensus       166 ~~l~~~l~~~i~~  178 (179)
T 1z0f_A          166 EDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=5.8e-35  Score=213.78  Aligned_cols=174  Identities=49%  Similarity=0.819  Sum_probs=155.0

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      .......+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   94 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA   94 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence            44567889999999999999999999999998887778888888888888898889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      |++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus        95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  174 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA  174 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999988766678999999999999877778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 027894          167 FTEVLTQIYHVVSR  180 (217)
Q Consensus       167 ~~~i~~~~~~~~~~  180 (217)
                      |++|.+.+.+...+
T Consensus       175 ~~~l~~~i~~~~~~  188 (191)
T 2a5j_A          175 FINTAKEIYRKIQQ  188 (191)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999877654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.1e-34  Score=211.94  Aligned_cols=173  Identities=40%  Similarity=0.712  Sum_probs=157.5

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      .+...+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.
T Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   94 (189)
T 2gf9_A           15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG   94 (189)
T ss_dssp             CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred             CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence            34556788999999999999999999999999888777888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      +|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||+++.|+++
T Consensus        95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  174 (189)
T 2gf9_A           95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQ  174 (189)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            99999999999999999999999988876656899999999999987777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027894          166 AFTEVLTQIYHVV  178 (217)
Q Consensus       166 ~~~~i~~~~~~~~  178 (217)
                      +|++|.+.+.+..
T Consensus       175 l~~~l~~~i~~~~  187 (189)
T 2gf9_A          175 VFERLVDVICEKM  187 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-34  Score=213.34  Aligned_cols=174  Identities=39%  Similarity=0.712  Sum_probs=158.7

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ...+..+||+++|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            34567899999999999999999999999988888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999998887665689999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 027894          168 TEVLTQIYHVVSRK  181 (217)
Q Consensus       168 ~~i~~~~~~~~~~~  181 (217)
                      ++|.+.+.+.....
T Consensus       163 ~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          163 ERLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998776544

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=211.56  Aligned_cols=173  Identities=65%  Similarity=1.016  Sum_probs=157.9

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      .++.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   98 (193)
T 2oil_A           19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA   98 (193)
T ss_dssp             -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            44567789999999999999999999999998888888888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      |++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++
T Consensus        99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  178 (193)
T 2oil_A           99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELA  178 (193)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999988766678999999999999877778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027894          167 FTEVLTQIYHVVS  179 (217)
Q Consensus       167 ~~~i~~~~~~~~~  179 (217)
                      |++|.+.+.+...
T Consensus       179 ~~~l~~~i~~~~~  191 (193)
T 2oil_A          179 FETVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=209.78  Aligned_cols=173  Identities=47%  Similarity=0.749  Sum_probs=156.0

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ...+..+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   83 (181)
T 3tw8_B            4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH   83 (181)
T ss_dssp             --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence            45678899999999999999999999999988888888888898888989998899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      ++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (181)
T 3tw8_B           84 GVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF  162 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999999999999999887765 689999999999998877888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 027894          168 TEVLTQIYHVVSRK  181 (217)
Q Consensus       168 ~~i~~~~~~~~~~~  181 (217)
                      ++|.+.+.+...+.
T Consensus       163 ~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          163 NCITELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999998877554

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.2e-35  Score=215.20  Aligned_cols=176  Identities=46%  Similarity=0.750  Sum_probs=148.9

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+.+..+||+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            34677899999999999999999999999988888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  179 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF  179 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999988877666789999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccc
Q 027894          168 TEVLTQIYHVVSRKAL  183 (217)
Q Consensus       168 ~~i~~~~~~~~~~~~~  183 (217)
                      ++|.+.+.+.....+.
T Consensus       180 ~~l~~~i~~~~~~~~~  195 (200)
T 2o52_A          180 LKCARTILNKIDSGEL  195 (200)
T ss_dssp             HHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999987765543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.6e-34  Score=209.85  Aligned_cols=172  Identities=31%  Similarity=0.503  Sum_probs=151.4

Q ss_pred             ccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhh
Q 027894            4 YRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYY   83 (217)
Q Consensus         4 ~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   83 (217)
                      ..........+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++
T Consensus         9 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   87 (183)
T 3kkq_A            9 SAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYM   87 (183)
T ss_dssp             -----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHH
T ss_pred             ccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHH
Confidence            33445566789999999999999999999999988888878877666 66677888889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccC-CCC
Q 027894           84 RGAVGALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSAL-ESM  161 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~  161 (217)
                      +.+|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++..++++++++||+ ++.
T Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  167 (183)
T 3kkq_A           88 RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL  167 (183)
T ss_dssp             HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence            99999999999999999999999988886533 3679999999999998888899999999999999999999999 999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027894          162 NVENAFTEVLTQIYH  176 (217)
Q Consensus       162 ~v~~~~~~i~~~~~~  176 (217)
                      |++++|++|.+.+.+
T Consensus       168 ~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          168 NVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998865

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=6.4e-35  Score=215.90  Aligned_cols=171  Identities=39%  Similarity=0.673  Sum_probs=150.9

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45679999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCC----CCCcEEEEEeCCCCCCcccCCHHHHHHHHH-HcCCcEEEeccCCCCCHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADLRHLCAVSTEDAKAFAE-RENTFFMETSALESMNVE  164 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~  164 (217)
                      ++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..++...++. ..+++++++||+++.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999887765432    478999999999997 45567788888887 678899999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 027894          165 NAFTEVLTQIYHVVSRK  181 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~~  181 (217)
                      ++|++|.+.+.+.....
T Consensus       164 ~l~~~l~~~~~~~~~~~  180 (207)
T 1vg8_A          164 QAFQTIARNALKQETEV  180 (207)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            99999999998877544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.7e-34  Score=208.12  Aligned_cols=171  Identities=42%  Similarity=0.734  Sum_probs=152.9

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ......++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   86 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   86 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence            34567899999999999999999999999988887788888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      ++++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  166 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF  166 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            99999999999999999999999887766789999999999998777788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027894          168 TEVLTQIYHVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      ++|.+.+.+..
T Consensus       167 ~~l~~~~~~~~  177 (181)
T 2efe_B          167 YEIARRLPRVQ  177 (181)
T ss_dssp             HHHHHTCC---
T ss_pred             HHHHHHHHhcC
Confidence            99998775543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-35  Score=216.36  Aligned_cols=173  Identities=40%  Similarity=0.723  Sum_probs=158.3

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +.+.+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+
T Consensus        17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (191)
T 3dz8_A           17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA   96 (191)
T ss_dssp             TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred             ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence            44567889999999999999999999999998888878888888888888888788999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      |++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (191)
T 3dz8_A           97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA  176 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999998876678999999999999887888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027894          167 FTEVLTQIYHVVS  179 (217)
Q Consensus       167 ~~~i~~~~~~~~~  179 (217)
                      |++|.+.+.+...
T Consensus       177 ~~~l~~~i~~~~~  189 (191)
T 3dz8_A          177 FERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=211.07  Aligned_cols=170  Identities=38%  Similarity=0.709  Sum_probs=147.3

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +++.+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            44567889999999999999999999999988877788888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-NTFFMETSALESMNVEN  165 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~  165 (217)
                      |++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++... +++++++||+++.|+++
T Consensus       100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  179 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE  179 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999998888776678999999999999877778888888998874 78999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027894          166 AFTEVLTQIYH  176 (217)
Q Consensus       166 ~~~~i~~~~~~  176 (217)
                      +|++|.+.+.+
T Consensus       180 l~~~l~~~i~~  190 (192)
T 2il1_A          180 IFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.3e-34  Score=207.74  Aligned_cols=166  Identities=38%  Similarity=0.669  Sum_probs=144.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45679999999999999999999999998887888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999988887655567999999999999877788888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027894          170 VLTQIY  175 (217)
Q Consensus       170 i~~~~~  175 (217)
                      |.+.+.
T Consensus       163 l~~~~~  168 (170)
T 1z08_A          163 LCKRMI  168 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998875

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=5e-34  Score=204.39  Aligned_cols=164  Identities=45%  Similarity=0.757  Sum_probs=150.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            45799999999999999999999999988878888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      +|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988887666789999999999998777788888999999999999999999999999999999


Q ss_pred             HHHH
Q 027894          171 LTQI  174 (217)
Q Consensus       171 ~~~~  174 (217)
                      .+.+
T Consensus       164 ~~~~  167 (170)
T 1r2q_A          164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8765

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1e-33  Score=202.84  Aligned_cols=165  Identities=40%  Similarity=0.735  Sum_probs=152.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+....+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999998888888888888888888898889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++|+|++++.+++.+..|+..+.....+..|+++|+||+|+.+.+++..++...++...+++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999988776678999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHH
Q 027894          170 VLTQI  174 (217)
Q Consensus       170 i~~~~  174 (217)
                      |.+.+
T Consensus       163 i~~~i  167 (170)
T 1z0j_A          163 ISRRI  167 (170)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-34  Score=210.66  Aligned_cols=170  Identities=39%  Similarity=0.690  Sum_probs=152.4

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      .+..+..+||+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (192)
T 2fg5_A           17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS   96 (192)
T ss_dssp             ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred             ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence            34567789999999999999999999999998777788888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      |++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||+++.|++++
T Consensus        97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (192)
T 2fg5_A           97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL  176 (192)
T ss_dssp             SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence            99999999999999999999999988776678999999999999876778889999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          167 FTEVLTQIYH  176 (217)
Q Consensus       167 ~~~i~~~~~~  176 (217)
                      |++|.+.+.+
T Consensus       177 ~~~l~~~i~~  186 (192)
T 2fg5_A          177 FQGISRQIPP  186 (192)
T ss_dssp             HHHHHHTCC-
T ss_pred             HHHHHHHHHh
Confidence            9999887643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.4e-34  Score=205.62  Aligned_cols=172  Identities=42%  Similarity=0.704  Sum_probs=145.6

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      .+..+..++|+++|.+|+|||||+++|.+..+.. .+.++.+.++....+..++..+.+.+|||||++.+...+..+++.
T Consensus         4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   83 (180)
T 2g6b_A            4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD   83 (180)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred             cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence            3456778999999999999999999999998853 566778888887777888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      +|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|+++
T Consensus        84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (180)
T 2g6b_A           84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL  163 (180)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999988876657899999999999987777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027894          166 AFTEVLTQIYHVV  178 (217)
Q Consensus       166 ~~~~i~~~~~~~~  178 (217)
                      +|+++.+.+.+..
T Consensus       164 l~~~l~~~~~~~~  176 (180)
T 2g6b_A          164 AFTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999886443

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2.6e-34  Score=205.94  Aligned_cols=166  Identities=43%  Similarity=0.750  Sum_probs=144.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999999888777888888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..++...++...+++++++||+++.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999888776678999999999999 4456778888999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 027894          172 TQIYHVV  178 (217)
Q Consensus       172 ~~~~~~~  178 (217)
                      +.+.+..
T Consensus       161 ~~~~~~~  167 (170)
T 1g16_A          161 KLIQEKI  167 (170)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHh
Confidence            9887643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=9.4e-34  Score=210.49  Aligned_cols=177  Identities=41%  Similarity=0.728  Sum_probs=153.6

Q ss_pred             cCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc
Q 027894            5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus         5 ~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      .+....+..++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++
T Consensus        12 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   91 (213)
T 3cph_A           12 GNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR   91 (213)
T ss_dssp             --------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT
T ss_pred             CCCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc
Confidence            33445667899999999999999999999999988888888888888888888998899999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      .+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..++...++...+++++++||+++.|++
T Consensus        92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  170 (213)
T 3cph_A           92 GAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVN  170 (213)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999999999998888766568999999999999 445677888889999899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccc
Q 027894          165 NAFTEVLTQIYHVVSRKA  182 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~~~  182 (217)
                      ++|++|.+.+.+......
T Consensus       171 ~l~~~l~~~~~~~~~~~~  188 (213)
T 3cph_A          171 EIFFTLAKLIQEKIDSNK  188 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999987765443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=1.5e-33  Score=206.24  Aligned_cols=175  Identities=39%  Similarity=0.682  Sum_probs=155.1

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEE-EEEEEECCe---------EEEEEEEeCCCchhhh
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFA-TRSIRVEDK---------IVKAQIWDTAGQERYR   76 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~~~   76 (217)
                      +.+.+..++|+++|.+|+|||||+++|.+..+...+.++.+.++. ...+...+.         .+.+.+|||||++.+.
T Consensus         5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   84 (195)
T 3bc1_A            5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR   84 (195)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred             ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence            345678899999999999999999999999988877788888777 556666655         7899999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEe
Q 027894           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMET  155 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (217)
                      ..+..+++.+|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++
T Consensus        85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (195)
T 3bc1_A           85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET  164 (195)
T ss_dssp             HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred             HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999999999999999999988877654 679999999999998777788888999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhhcc
Q 027894          156 SALESMNVENAFTEVLTQIYHVVSRK  181 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~~~~~~~~~  181 (217)
                      ||+++.|++++|++|.+.+.+...+.
T Consensus       165 Sa~~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          165 SAANGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999998776543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=4.2e-34  Score=213.18  Aligned_cols=175  Identities=39%  Similarity=0.683  Sum_probs=153.5

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCe----------EEEEEEEeCCCchhhh
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK----------IVKAQIWDTAGQERYR   76 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~   76 (217)
                      ....+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++.          .+.+.+|||||++.+.
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~   98 (217)
T 2f7s_A           19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR   98 (217)
T ss_dssp             --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred             CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence            345678899999999999999999999999887777777777777777766665          6889999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEe
Q 027894           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMET  155 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (217)
                      ..+..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++
T Consensus        99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  178 (217)
T 2f7s_A           99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET  178 (217)
T ss_dssp             HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred             hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence            9999999999999999999999999999999888766554 679999999999998777788899999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhhcc
Q 027894          156 SALESMNVENAFTEVLTQIYHVVSRK  181 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~~~~~~~~~  181 (217)
                      ||+++.|++++|++|.+.+.+.....
T Consensus       179 Sa~~g~gi~~l~~~l~~~i~~~~~~~  204 (217)
T 2f7s_A          179 SAATGQNVEKAVETLLDLIMKRMEQC  204 (217)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999998766443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=8.5e-34  Score=203.20  Aligned_cols=163  Identities=40%  Similarity=0.687  Sum_probs=148.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999999888788888888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc---ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL---CAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+...   +.+..++...++...+++++++||+++.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998888776678999999999999754   56788888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027894          169 EVLTQI  174 (217)
Q Consensus       169 ~i~~~~  174 (217)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.8e-33  Score=204.97  Aligned_cols=170  Identities=31%  Similarity=0.495  Sum_probs=146.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|.+|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3579999999999999999999999988777766664 444556668888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .....++...++...+++++++||+++.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999888877543 6899999999999974 467788899999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 027894          170 VLTQIYHVVSRKA  182 (217)
Q Consensus       170 i~~~~~~~~~~~~  182 (217)
                      |.+.+.+...+..
T Consensus       160 l~~~~~~~~~~~~  172 (189)
T 4dsu_A          160 LVREIRKHKEKMS  172 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcc
Confidence            9999988876553

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=5e-34  Score=206.14  Aligned_cols=166  Identities=37%  Similarity=0.687  Sum_probs=151.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999999988888888888888888888998899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      +|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  171 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  171 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988877655689999999999998777788888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027894          171 LTQIYH  176 (217)
Q Consensus       171 ~~~~~~  176 (217)
                      .+.+.+
T Consensus       172 ~~~~~~  177 (179)
T 2y8e_A          172 AAALPG  177 (179)
T ss_dssp             HHTCC-
T ss_pred             HHHHhh
Confidence            886643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=4.6e-34  Score=209.76  Aligned_cols=172  Identities=27%  Similarity=0.329  Sum_probs=144.1

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh-hhHhhhcC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA-ITSAYYRG   85 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~   85 (217)
                      +.+.+..++|+++|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   96 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT   96 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence            44566789999999999999999999986554433445555566666777899899999999999987664 77788899


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      +|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus        97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~  176 (195)
T 3cbq_A           97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR  176 (195)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHH
Confidence            9999999999999999999999988876543 579999999999998777788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027894          165 NAFTEVLTQIYHVV  178 (217)
Q Consensus       165 ~~~~~i~~~~~~~~  178 (217)
                      ++|+++++.+.+..
T Consensus       177 ~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          177 ELFEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999886543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=203.18  Aligned_cols=169  Identities=30%  Similarity=0.388  Sum_probs=137.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh--hhhhhHhhhcCCcE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--YRAITSAYYRGAVG   88 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~   88 (217)
                      +..++|+++|.+|+|||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+|||||++.  +......+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            35699999999999999999999998876544 4556666777778888889999999999887  56667788899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887653 2579999999999998777788888889999899999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 027894          168 TEVLTQIYHVVSR  180 (217)
Q Consensus       168 ~~i~~~~~~~~~~  180 (217)
                      ++|.+.+...+..
T Consensus       161 ~~l~~~~~~~~~~  173 (175)
T 2nzj_A          161 EGVVRQLRLRRRD  173 (175)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhcc
Confidence            9999998776543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=7.3e-34  Score=205.97  Aligned_cols=167  Identities=33%  Similarity=0.427  Sum_probs=149.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4679999999999999999999999988888878877776 666778888899999999999999988999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999988865543 57999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 027894          170 VLTQIYHVV  178 (217)
Q Consensus       170 i~~~~~~~~  178 (217)
                      +.+.+.+..
T Consensus       163 l~~~~~~~~  171 (181)
T 3t5g_A          163 IILEAEKMD  171 (181)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHhc
Confidence            999887654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.5e-34  Score=211.42  Aligned_cols=165  Identities=32%  Similarity=0.427  Sum_probs=141.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|.+|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            345699999999999999999999999887766676664443 4455788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      ++|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.. +.+..++...++..++++++++||+++.|++++|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            999999999999998888777665432  4789999999999975 4567788888999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027894          168 TEVLTQIYH  176 (217)
Q Consensus       168 ~~i~~~~~~  176 (217)
                      ++|.+.+.+
T Consensus       163 ~~l~~~~~~  171 (199)
T 2gf0_A          163 QELLTLETR  171 (199)
T ss_dssp             HHHHHHCSS
T ss_pred             HHHHHHHhh
Confidence            999887654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=5.5e-34  Score=203.90  Aligned_cols=165  Identities=36%  Similarity=0.625  Sum_probs=150.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999999988888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999988887655 679999999999998777788888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027894          171 LTQIYH  176 (217)
Q Consensus       171 ~~~~~~  176 (217)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.4e-33  Score=206.03  Aligned_cols=168  Identities=36%  Similarity=0.658  Sum_probs=147.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-hhhHhhhcCCc
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-AITSAYYRGAV   87 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d   87 (217)
                      .....+||+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            34567999999999999999999999999888888888888888888889888999999999999988 88899999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC---CCH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES---MNV  163 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v  163 (217)
                      ++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+++   .|+
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i  175 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV  175 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence            9999999999999999999998887664 368999999999999877778889999999999999999999999   999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          164 ENAFTEVLTQIYH  176 (217)
Q Consensus       164 ~~~~~~i~~~~~~  176 (217)
                      +++|++|.+.+.+
T Consensus       176 ~~l~~~l~~~i~~  188 (189)
T 1z06_A          176 EAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHC-----
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=3.9e-33  Score=201.29  Aligned_cols=167  Identities=39%  Similarity=0.690  Sum_probs=146.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            34568999999999999999999999999888888888888888888889988999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCC----CCCcEEEEEeCCCCCCcccCCHHHHHHHHH-HcCCcEEEeccCCCCCH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADLRHLCAVSTEDAKAFAE-RENTFFMETSALESMNV  163 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  163 (217)
                      +++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..++...++. ..+++++++||+++.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999888765443    678999999999997 45677888888888 56789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          164 ENAFTEVLTQIYH  176 (217)
Q Consensus       164 ~~~~~~i~~~~~~  176 (217)
                      +++|+++.+.+.+
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.7e-33  Score=202.61  Aligned_cols=169  Identities=29%  Similarity=0.464  Sum_probs=150.0

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            4456799999999999999999999999888777777776665 566678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            99999999999999999998887443 33679999999999998777888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027894          168 TEVLTQIYHVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      ++|.+.+.+..
T Consensus       164 ~~l~~~~~~~~  174 (181)
T 2fn4_A          164 EQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999987655

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.1e-33  Score=202.74  Aligned_cols=165  Identities=28%  Similarity=0.346  Sum_probs=134.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh-hhHhhhcCCcEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA-ITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~   91 (217)
                      .+||+++|.+|+|||||+++|.+.........+.+.+.....+.+++..+.+.+|||||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998877666666667777788888899999999999999988865 67778899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999988877654 489999999999998778899999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027894          171 LTQIYHV  177 (217)
Q Consensus       171 ~~~~~~~  177 (217)
                      .+.+...
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.3e-33  Score=203.18  Aligned_cols=170  Identities=45%  Similarity=0.737  Sum_probs=153.2

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   89 (195)
T 1x3s_A           10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ   89 (195)
T ss_dssp             TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            34456799999999999999999999999988888888888888888888998999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.+..++...++...+++++++||+++.|++++
T Consensus        90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (195)
T 1x3s_A           90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  168 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            99999999999999999999999877653 5799999999999943 567788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027894          167 FTEVLTQIYHVV  178 (217)
Q Consensus       167 ~~~i~~~~~~~~  178 (217)
                      |++|.+.+.+..
T Consensus       169 ~~~l~~~~~~~~  180 (195)
T 1x3s_A          169 FEELVEKIIQTP  180 (195)
T ss_dssp             HHHHHHHHHTSG
T ss_pred             HHHHHHHHHhhh
Confidence            999999987543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1e-33  Score=210.83  Aligned_cols=171  Identities=24%  Similarity=0.422  Sum_probs=145.4

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      .++.....+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++.
T Consensus        20 ~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   98 (214)
T 3q3j_B           20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD   98 (214)
T ss_dssp             -------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             CCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence            344556789999999999999999999999999888878887666 4455677778999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHH-HHHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-c
Q 027894           86 AVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-F  151 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~  151 (217)
                      +|++++|||++++.+++. +..|+..+.... .+.|+++|+||+|+.++            +.+..+++..++...++ +
T Consensus        99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  177 (214)
T 3q3j_B           99 SDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI  177 (214)
T ss_dssp             CSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             CeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence            999999999999999998 688999888765 68999999999999753            57889999999999999 8


Q ss_pred             EEEeccCCCCC-HHHHHHHHHHHHHHHh
Q 027894          152 FMETSALESMN-VENAFTEVLTQIYHVV  178 (217)
Q Consensus       152 ~~~~Sa~~~~~-v~~~~~~i~~~~~~~~  178 (217)
                      |+++||+++.| ++++|+++.+.+....
T Consensus       178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          178 YLEGSAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             EEEeccCCCcccHHHHHHHHHHHHhccC
Confidence            99999999998 9999999999887554

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=5.8e-34  Score=205.80  Aligned_cols=167  Identities=32%  Similarity=0.493  Sum_probs=146.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC-eEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+ ..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4579999999999999999999999988766667877778888887876 678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCC--CCCc-EEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTD--SNIV-IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      ++|||++++.+++.+..|+..+.....  .+.| +++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            999999999999999999888766421  2445 8899999999877778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027894          167 FTEVLTQIYHV  177 (217)
Q Consensus       167 ~~~i~~~~~~~  177 (217)
                      |++|.+.+.+.
T Consensus       164 ~~~l~~~~~~~  174 (178)
T 2hxs_A          164 FQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhh
Confidence            99999887643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=207.67  Aligned_cols=167  Identities=38%  Similarity=0.628  Sum_probs=138.6

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            44567999999999999999999999999877777888888888888889988999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC------CcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR------HLCAVSTEDAKAFAERENTFFMETSALESMN  162 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.      ..+.+..++...++...+++++++||+++.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999988877665689999999999996      3456778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQIY  175 (217)
Q Consensus       163 v~~~~~~i~~~~~  175 (217)
                      ++++|++|.+.+.
T Consensus       184 v~el~~~l~~~i~  196 (199)
T 2p5s_A          184 IVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998774

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=9.3e-33  Score=200.98  Aligned_cols=165  Identities=19%  Similarity=0.288  Sum_probs=143.2

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ......+||+++|.+|||||||+++|+++.+...+.++. . .....+.+++..+.+.+|||+|++.+.     +++.+|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-G-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-E-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-c-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            445678999999999999999999999999877776663 3 334677789999999999999998776     678899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCC--CcccCCHHHHHHHHHHcC-CcEEEeccCCCCCH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLR--HLCAVSTEDAKAFAEREN-TFFMETSALESMNV  163 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v  163 (217)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.  ..+.+..+++..++...+ ++|+++||+++.|+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            99999999999999999999999987654 679999999999994  456788899999999987 89999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027894          164 ENAFTEVLTQIYHVVS  179 (217)
Q Consensus       164 ~~~~~~i~~~~~~~~~  179 (217)
                      +++|+++.+.+.+.+.
T Consensus       168 ~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          168 ERVFQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999887653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=208.54  Aligned_cols=169  Identities=31%  Similarity=0.447  Sum_probs=144.5

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +....+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            345689999999999999999999999998887777777666 5555566677889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  178 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF  178 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999877643 578999999999998888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027894          168 TEVLTQIYHVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      ++|.+.+.+..
T Consensus       179 ~~l~~~i~~~~  189 (201)
T 3oes_A          179 TKVIQEIARVE  189 (201)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhhh
Confidence            99999987654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=4.2e-33  Score=199.11  Aligned_cols=163  Identities=33%  Similarity=0.403  Sum_probs=123.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|+|||||+++|.+....... ++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            589999999999999999999987654333 4444444 34556788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999998887653 36899999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027894          172 TQIYHV  177 (217)
Q Consensus       172 ~~~~~~  177 (217)
                      +.+.+.
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.3e-32  Score=202.86  Aligned_cols=166  Identities=37%  Similarity=0.672  Sum_probs=147.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeE----------------------------
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI----------------------------   61 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   61 (217)
                      .+..++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            3567999999999999999999999999888888888888888777776655                            


Q ss_pred             ---------EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           62 ---------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        62 ---------~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                               ..+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+....  +.|+++|+||+| ..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence                     889999999999999999999999999999999999999999999998887655  399999999999 55


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      .+.+..+++.+++...+++++++||+++.|++++|++|.+.+.+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            5677888999999999999999999999999999999999988654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=5.2e-33  Score=203.79  Aligned_cols=168  Identities=25%  Similarity=0.478  Sum_probs=147.1

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ......+||+++|.+|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++++|
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            345678999999999999999999999999877777877666554 5667888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc--ccCCHHHHHHHHHHcCCc-EEEeccCCCCCH
Q 027894           88 GALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL--CAVSTEDAKAFAERENTF-FMETSALESMNV  163 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  163 (217)
                      ++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.++  +.+..+++..++...++. ++++||+++.|+
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  175 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL  175 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence            99999999999999997 67888887654 67999999999999753  667889999999999998 999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027894          164 ENAFTEVLTQIYHV  177 (217)
Q Consensus       164 ~~~~~~i~~~~~~~  177 (217)
                      +++|++|.+.+.+.
T Consensus       176 ~~l~~~l~~~i~~~  189 (194)
T 3reg_A          176 NEVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=204.55  Aligned_cols=165  Identities=26%  Similarity=0.396  Sum_probs=141.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....+||+++|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+... ..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            345679999999999999999999999998877778877665 345667888899999999999888764 668899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccC---CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc-CCCCCHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHT---DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA-LESMNVE  164 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~v~  164 (217)
                      +++|||++++.+++.+..|+..+....   ..+.|+++|+||+|+...+.+..+++.+++...+++++++|| +++.|++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            999999999999999999998887653   157999999999999877788899999999999999999999 8999999


Q ss_pred             HHHHHHHHHHH
Q 027894          165 NAFTEVLTQIY  175 (217)
Q Consensus       165 ~~~~~i~~~~~  175 (217)
                      ++|++|++.+.
T Consensus       175 ~lf~~l~~~i~  185 (187)
T 3c5c_A          175 HVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=8.6e-33  Score=197.47  Aligned_cols=163  Identities=34%  Similarity=0.530  Sum_probs=142.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999999999999988777767665554 3455678888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..++...++...+++++++||+++.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999888876553 579999999999998777788899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027894          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      .+.+.
T Consensus       162 ~~~i~  166 (168)
T 1u8z_A          162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=7.3e-33  Score=204.05  Aligned_cols=172  Identities=30%  Similarity=0.461  Sum_probs=139.3

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      .......++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++
T Consensus        14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (201)
T 2q3h_A           14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT   92 (201)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred             CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence            33456789999999999999999999999888777767765444 45566788889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHcCC-cE
Q 027894           87 VGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAERENT-FF  152 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~  152 (217)
                      |++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+..            .+.+..++...++...++ ++
T Consensus        93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (201)
T 2q3h_A           93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY  171 (201)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            9999999999999999986 7888887665 5899999999999965            256778889999998887 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894          153 METSALESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       153 ~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      +++||+++.|++++|++|.+.+.+...+
T Consensus       172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          172 IECSALTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             EEEecCCCCCHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999877654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=3.5e-33  Score=202.24  Aligned_cols=169  Identities=37%  Similarity=0.665  Sum_probs=134.9

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            4567999999999999999999999999888887888877877777776 556889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCC----CCCcEEEEEeCCCCCC-cccCCHHHHHHHHH-HcCCcEEEeccCCCCC
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADLRH-LCAVSTEDAKAFAE-RENTFFMETSALESMN  162 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~  162 (217)
                      +++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.. .+.+..++...++. ..+++++++||+++.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999888765432    6789999999999953 34567888888887 5678999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027894          163 VENAFTEVLTQIYHVV  178 (217)
Q Consensus       163 v~~~~~~i~~~~~~~~  178 (217)
                      ++++|++|.+.+.+.+
T Consensus       165 i~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          165 VDTAFEEIARSALQQN  180 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999988765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1.4e-32  Score=199.79  Aligned_cols=169  Identities=33%  Similarity=0.497  Sum_probs=148.1

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            345679999999999999999999999988777767665554 4455678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999999999888876553 479999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027894          168 TEVLTQIYHVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      ++|.+.+.+.+
T Consensus       173 ~~l~~~i~~~~  183 (187)
T 2a9k_A          173 FDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988665

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.3e-32  Score=198.85  Aligned_cols=164  Identities=20%  Similarity=0.335  Sum_probs=138.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|.+|||||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+|||||++.     ..+++++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            457999999999999999999999998876 556666444 56677888889999999999876     35778899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhcc---CCCCCcEEEEEeCCCCC--CcccCCHHHHHHHHHHc-CCcEEEeccCCCCCHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGH---TDSNIVIMLVGNKADLR--HLCAVSTEDAKAFAERE-NTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~---~~~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~  164 (217)
                      +|||++++.+++.+..|+..+...   ...+.|+++|+||+|+.  ..+.+..+++.+++... +++++++||+++.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            999999999999999876555443   23679999999999994  45677888888888876 6899999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 027894          165 NAFTEVLTQIYHVVSRK  181 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~~  181 (217)
                      ++|+++.+.+.+.....
T Consensus       158 ~lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999998876544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.1e-32  Score=197.03  Aligned_cols=162  Identities=31%  Similarity=0.513  Sum_probs=142.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .++|+++|.+|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999999887777777765543 4556777788999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-NTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++... +++++++||+++.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            99999999999998888876643 367999999999999877778888899999887 7899999999999999999999


Q ss_pred             HHHHH
Q 027894          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      .+.+.
T Consensus       162 ~~~i~  166 (167)
T 1c1y_A          162 VRQIN  166 (167)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98763

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.1e-32  Score=196.72  Aligned_cols=163  Identities=31%  Similarity=0.495  Sum_probs=144.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .++|+++|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999988777766665443 56677888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..++...++...+++++++||+++.|++++|++|.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            999999999999998888766543 6799999999999987778888889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027894          172 TQIYH  176 (217)
Q Consensus       172 ~~~~~  176 (217)
                      +.+.+
T Consensus       162 ~~~~~  166 (167)
T 1kao_A          162 RQMNY  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88753

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-32  Score=203.42  Aligned_cols=169  Identities=28%  Similarity=0.365  Sum_probs=139.9

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcC--CCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-hhhhhHhhhcC
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEF--SLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-YRAITSAYYRG   85 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~   85 (217)
                      .....+||+++|.+|||||||+++|.+...  ...+ ++.+.++....+.+++..+.+.+|||+|++. +..+...+++.
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            445679999999999999999999997543  3322 3455666667777889889999999999876 45566777889


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      +|++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++|+|++
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999999988877543 2579999999999998767788888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027894          165 NAFTEVLTQIYHVV  178 (217)
Q Consensus       165 ~~~~~i~~~~~~~~  178 (217)
                      ++|++|.+.+....
T Consensus       192 elf~~l~~~i~~~~  205 (211)
T 2g3y_A          192 ELFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999886543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.8e-33  Score=209.03  Aligned_cols=167  Identities=30%  Similarity=0.531  Sum_probs=142.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4679999999999999999999999988777777776554 445567788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCccc--------CCHHHHHHHHHHcCC-cEEEeccCCC
Q 027894           91 LVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLCA--------VSTEDAKAFAERENT-FFMETSALES  160 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~  160 (217)
                      +|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+...        +..+++..++...++ +++++||+++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999986 7888887665 5899999999999965433        377888899988886 8999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhh
Q 027894          161 MNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~~~~~  179 (217)
                      +|++++|++|++.+.+...
T Consensus       165 ~gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC--
T ss_pred             CCHHHHHHHHHHHHhhhhh
Confidence            9999999999999876543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-32  Score=201.68  Aligned_cols=167  Identities=33%  Similarity=0.449  Sum_probs=146.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            45679999999999999999999999998877777776555 44566788889999999999887 77788899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESM-NVENAF  167 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~  167 (217)
                      ++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+++. |++++|
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            99999999999999999988887653 2689999999999998777888899999999999999999999999 999999


Q ss_pred             HHHHHHHHHHh
Q 027894          168 TEVLTQIYHVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      ++|.+.+.+..
T Consensus       183 ~~l~~~i~~~~  193 (196)
T 2atv_A          183 YELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999987654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.8e-33  Score=208.11  Aligned_cols=171  Identities=30%  Similarity=0.467  Sum_probs=115.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCCCCcccceeEEEEEEEECCe--EEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRVEDK--IVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ...++|+++|.+|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+|||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999998  776677777777777777878776  78999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCC---CCCcEEEEEeCCCCCC-cccCCHHHHHHHHHHcCCcEEEeccCC-CC
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTD---SNIVIMLVGNKADLRH-LCAVSTEDAKAFAERENTFFMETSALE-SM  161 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  161 (217)
                      |++++|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.. .+.+..+++..++...+++++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999987765   5899999999999987 677888999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHhhcc
Q 027894          162 NVENAFTEVLTQIYHVVSRK  181 (217)
Q Consensus       162 ~v~~~~~~i~~~~~~~~~~~  181 (217)
                      |++++|++|.+.+.+...+.
T Consensus       178 gi~~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYEDK  197 (208)
T ss_dssp             --CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhh
Confidence            99999999999988776543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3e-32  Score=199.70  Aligned_cols=165  Identities=28%  Similarity=0.466  Sum_probs=144.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   92 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   92 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence            345789999999999999999999999988777777776554 4456677778899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEE
Q 027894           89 ALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFME  154 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  154 (217)
                      +++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...++ ++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  171 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  171 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence            99999999999999987 7888887765 58999999999999653            46778889999999887 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 027894          155 TSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      +||++++|++++|++|.+.++
T Consensus       172 ~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          172 CSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=2e-32  Score=202.53  Aligned_cols=168  Identities=27%  Similarity=0.483  Sum_probs=142.8

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +...+..+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        22 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  100 (205)
T 1gwn_A           22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS  100 (205)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence            33456789999999999999999999999998877777776655 34556677789999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcC-CcE
Q 027894           87 VGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAEREN-TFF  152 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~  152 (217)
                      |++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...+ +++
T Consensus       101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  179 (205)
T 1gwn_A          101 DAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY  179 (205)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEE
Confidence            999999999999999998 78888887655 57999999999999642            4577888999998887 689


Q ss_pred             EEeccC-CCCCHHHHHHHHHHHHHH
Q 027894          153 METSAL-ESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       153 ~~~Sa~-~~~~v~~~~~~i~~~~~~  176 (217)
                      +++||+ ++.|++++|+.|++.+..
T Consensus       180 ~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          180 IECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeeeccCCcCHHHHHHHHHHHHhh
Confidence            999999 689999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1.9e-32  Score=199.21  Aligned_cols=164  Identities=27%  Similarity=0.480  Sum_probs=142.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            35679999999999999999999999998777777776555 34566778889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcC-CcEEEe
Q 027894           90 LLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAEREN-TFFMET  155 (217)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  155 (217)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.            +.+..+++..++..++ ++|+++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 68888887655 67999999999999742            4678888999998887 789999


Q ss_pred             ccC-CCCCHHHHHHHHHHHHH
Q 027894          156 SAL-ESMNVENAFTEVLTQIY  175 (217)
Q Consensus       156 Sa~-~~~~v~~~~~~i~~~~~  175 (217)
                      ||+ ++.|++++|+.+.+.+.
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHH
T ss_pred             eecCCCcCHHHHHHHHHHHHh
Confidence            999 68999999999998875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.2e-31  Score=195.74  Aligned_cols=170  Identities=31%  Similarity=0.482  Sum_probs=135.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +....++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            345679999999999999999999999988776666655443 4556678888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++..+++...+++++++||+++.|++++|
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999888876543 5799999999999976 5677888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 027894          168 TEVLTQIYHVVSR  180 (217)
Q Consensus       168 ~~i~~~~~~~~~~  180 (217)
                      ++|.+.+.+.+.+
T Consensus       175 ~~l~~~~~~~~~~  187 (190)
T 3con_A          175 YTLVREIRQYRMK  187 (190)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999876543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=4.1e-32  Score=197.35  Aligned_cols=164  Identities=32%  Similarity=0.518  Sum_probs=142.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4579999999999999999999999988777767765444 445667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEec
Q 027894           91 LVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  156 (217)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..++...++...++ +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 6888887655 48999999999999653            46778888899998887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 027894          157 ALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       157 a~~~~~v~~~~~~i~~~~~~  176 (217)
                      |+++.|++++|+++.+.+.+
T Consensus       161 a~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCccCHHHHHHHHHHHHhc
Confidence            99999999999999988763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=4.2e-32  Score=202.07  Aligned_cols=167  Identities=32%  Similarity=0.480  Sum_probs=124.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            3579999999999999999999999888776666665443 455667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc------------cCCHHHHHHHHHHcCC-cEEEec
Q 027894           91 LVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC------------AVSTEDAKAFAERENT-FFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  156 (217)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+....            .+..+++..++...++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 6888887655 679999999999997542            5677888999999997 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhh
Q 027894          157 ALESMNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       157 a~~~~~v~~~~~~i~~~~~~~~~  179 (217)
                      |+++.|++++|++|.+.+.+...
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999886553

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1.3e-31  Score=197.56  Aligned_cols=165  Identities=30%  Similarity=0.482  Sum_probs=144.1

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....+||+++|.+|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            3467999999999999999999999999887777777666543 456788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEe
Q 027894           90 LLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMET  155 (217)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  155 (217)
                      ++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...            +.+..++...++...++ +++++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            999999999999998 67888777654 58999999999999754            45778888999999888 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH
Q 027894          156 SALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      ||+++.|++++|++|.+.+++
T Consensus       180 SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999988753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.9e-32  Score=204.33  Aligned_cols=173  Identities=29%  Similarity=0.487  Sum_probs=146.8

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ......+||+++|.+|||||||+++|++..+...+.++.+.......+... +..+.+.+|||||++.+...+..++..+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            345578999999999999999999999988877777777777666665554 3448899999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      |++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  165 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP  165 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence            99999999999999999999999988776667999999999999877778888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 027894          167 FTEVLTQIYHVVSR  180 (217)
Q Consensus       167 ~~~i~~~~~~~~~~  180 (217)
                      |++|.+.+.+....
T Consensus       166 ~~~l~~~~~~~~~~  179 (218)
T 4djt_A          166 FLHLARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHHHHCCTTC
T ss_pred             HHHHHHHHhccccc
Confidence            99999998765543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=1.4e-32  Score=201.66  Aligned_cols=171  Identities=22%  Similarity=0.253  Sum_probs=138.5

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-----------CcccceeEEEEEE-EECCeEEEEEEEeCCCch
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-----------KSTIGVEFATRSI-RVEDKIVKAQIWDTAGQE   73 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~   73 (217)
                      .....+..+||+++|.+|||||||++.+.+. +...+           .++.+.++....+ .+++..+.+.+|||||++
T Consensus         7 ~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   85 (198)
T 3t1o_A            7 NFANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV   85 (198)
T ss_dssp             ETTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred             chhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence            3556678899999999999999999766553 33332           2344444443333 456677899999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH
Q 027894           74 RYRAITSAYYRGAVGALLVYDVT------RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER  147 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  147 (217)
                      .+...+..+++++|++++|||++      +..+++.+..|+..+... ..+.|+++|+||+|+.+  .+..+++.+++..
T Consensus        86 ~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~  162 (198)
T 3t1o_A           86 FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-LDDVPIVIQVNKRDLPD--ALPVEMVRAVVDP  162 (198)
T ss_dssp             SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-TTSSCEEEEEECTTSTT--CCCHHHHHHHHCT
T ss_pred             HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-cCCCCEEEEEEchhccc--ccCHHHHHHHHHh
Confidence            99999999999999999999999      556777777787777433 37899999999999976  4788889999999


Q ss_pred             cCC-cEEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894          148 ENT-FFMETSALESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       148 ~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      .++ +++++||+++.|++++|++|.+.+.+...+
T Consensus       163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          163 EGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             cCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            999 999999999999999999999999887643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=213.74  Aligned_cols=167  Identities=50%  Similarity=0.812  Sum_probs=142.6

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ..+..+||+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            45678999999999999999999999998887777888888888888899988999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~  188 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  188 (199)
T ss_dssp             EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999987777777778889999999999999999999999999


Q ss_pred             HHHHHHH
Q 027894          169 EVLTQIY  175 (217)
Q Consensus       169 ~i~~~~~  175 (217)
                      +|.+.+.
T Consensus       189 ~l~~~l~  195 (199)
T 3l0i_B          189 TMAAEIK  195 (199)
T ss_dssp             HHTTTTT
T ss_pred             HHHHHHH
Confidence            9987664

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=7e-31  Score=193.28  Aligned_cols=172  Identities=78%  Similarity=1.187  Sum_probs=151.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            46799999999999999999999999988878788888888888889999899999999999999888888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      +|+|+++..+++.+..|+..+......+.|+++++||+|+.+.+....+++..++...++.++++|++++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999998888887765544678999999999998767778888999999999999999999999999999999


Q ss_pred             HHHHHHHhhccc
Q 027894          171 LTQIYHVVSRKA  182 (217)
Q Consensus       171 ~~~~~~~~~~~~  182 (217)
                      .+.+.+......
T Consensus       163 ~~~~~~~~~~~~  174 (199)
T 2f9l_A          163 LTEIYRIVSQKQ  174 (199)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHHhhcc
Confidence            999987664443

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.9e-32  Score=192.76  Aligned_cols=162  Identities=31%  Similarity=0.429  Sum_probs=140.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            3589999999999999999999998887666666654443 445577888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      |+|++++.+++.+..|+..+.....  .+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999998888877765432  57899999999999877778888888999999999999999999999999999


Q ss_pred             HHHHH
Q 027894          170 VLTQI  174 (217)
Q Consensus       170 i~~~~  174 (217)
                      |.+.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=2.5e-32  Score=204.17  Aligned_cols=171  Identities=30%  Similarity=0.521  Sum_probs=150.4

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +......+||+++|.+|||||||+++|+.+.+...+.++.+.+.....+.+.+..+.+.+|||||++.+...+..+++++
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            44566789999999999999999999888887777778888888888888899999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      |++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... . .+...++...+++++++||+++.|++++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKP  165 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999988765 5899999999999975332 2 2566677888999999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 027894          167 FTEVLTQIYHVVSR  180 (217)
Q Consensus       167 ~~~i~~~~~~~~~~  180 (217)
                      |++|.+.+......
T Consensus       166 ~~~l~~~l~~~~~~  179 (221)
T 3gj0_A          166 FLWLARKLIGDPNL  179 (221)
T ss_dssp             HHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHhCccc
Confidence            99999998765543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=3.7e-31  Score=188.49  Aligned_cols=161  Identities=32%  Similarity=0.536  Sum_probs=141.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            48999999999999999999999988776666665443 45566788889999999999999988999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      +|++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++..+++...+++++++||+++.|++++|++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999888776543 4799999999999976 45678888999999999999999999999999999999


Q ss_pred             HHHH
Q 027894          172 TQIY  175 (217)
Q Consensus       172 ~~~~  175 (217)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T 2ce2_X          161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-31  Score=197.30  Aligned_cols=165  Identities=32%  Similarity=0.489  Sum_probs=138.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|.+|+|||||+++|.+..+...+.++.+..+.. .+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            346899999999999999999999999877776776665543 3667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEec
Q 027894           91 LVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  156 (217)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...            +.+..++...++...++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 67888877654 58999999999999654            45677888889988887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 027894          157 ALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       157 a~~~~~v~~~~~~i~~~~~~~  177 (217)
                      |+++.|++++|++|.+.+.+.
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988743

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.98  E-value=7.9e-31  Score=192.02  Aligned_cols=167  Identities=28%  Similarity=0.378  Sum_probs=136.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc--CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-hhhhhHhhhcCCc
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNE--FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-YRAITSAYYRGAV   87 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d   87 (217)
                      ...+||+++|.+|||||||+++|.+..  +...+ ++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            356999999999999999999999643  23322 3455566667777899889999999999765 4556677888999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      ++++|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988776543 357999999999999776778888888888888999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027894          167 FTEVLTQIYHVV  178 (217)
Q Consensus       167 ~~~i~~~~~~~~  178 (217)
                      |+++.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886544

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.98  E-value=4.6e-31  Score=193.91  Aligned_cols=167  Identities=16%  Similarity=0.270  Sum_probs=129.7

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      .+++....++|+|+|.+|||||||+++|++..+.. .+.+|.+...  ..+...  .+.+.+|||||++.+...+..+++
T Consensus        10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~   85 (199)
T 4bas_A           10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG--RVAFTVFDMGGAKKFRGLWETYYD   85 (199)
T ss_dssp             ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCT
T ss_pred             cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC--CEEEEEEECCCCHhHHHHHHHHHh
Confidence            34556778999999999999999999999999877 6667776443  333333  378999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCC--------CCCcEEEEEeCCCCCCcccCCHHHHHHH------HHHcCC
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTD--------SNIVIMLVGNKADLRHLCAVSTEDAKAF------AERENT  150 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~------~~~~~~  150 (217)
                      .+|++++|||++++.+|+.+..|+..+.....        .+.|+++|+||+|+....  ..++....      +...++
T Consensus        86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  163 (199)
T 4bas_A           86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPF  163 (199)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCE
T ss_pred             cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCee
Confidence            99999999999999999999888888765421        279999999999997642  22222211      144678


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          151 FFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       151 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      +++++||+++.|++++|++|.+.+.+..
T Consensus       164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          164 VIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999988765

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.98  E-value=3.4e-31  Score=195.76  Aligned_cols=163  Identities=31%  Similarity=0.490  Sum_probs=138.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....+||+++|.+|+|||||+++|.++.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            45679999999999999999999999988777766664 34455666788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc------------cCCHHHHHHHHHHcCC-cEEEe
Q 027894           90 LLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC------------AVSTEDAKAFAERENT-FFMET  155 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  155 (217)
                      ++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+....            .+..++...++...++ +++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999986 7888887765 689999999999996543            2777888899999886 49999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 027894          156 SALESMNVENAFTEVLTQI  174 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~~  174 (217)
                      ||++++|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.98  E-value=3.6e-32  Score=197.08  Aligned_cols=163  Identities=30%  Similarity=0.519  Sum_probs=126.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45699999999999999999999998877666666554332 22334566678899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCccc----------CCHHHHHHHHHHcCC-cEEEeccC
Q 027894           91 LVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLCA----------VSTEDAKAFAERENT-FFMETSAL  158 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  158 (217)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+.          +..++...++...++ +++++||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999987 6888887665 5899999999999965443          477888899988886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027894          159 ESMNVENAFTEVLTQIY  175 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~~~  175 (217)
                      ++.|++++|++|.+.+.
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1.1e-29  Score=185.76  Aligned_cols=169  Identities=78%  Similarity=1.186  Sum_probs=150.5

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      .+.+.+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.
T Consensus        22 ~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~  101 (191)
T 1oix_A           22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG  101 (191)
T ss_dssp             --CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhc
Confidence            34456788999999999999999999999999888888999988888888899988899999999999888888889999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      ++++++|+|.++..+++.+..|+..+......+.|+++++||+|+.+......+++..++...++.++++|++++.++++
T Consensus       102 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999888888877654446789999999999987667788889999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027894          166 AFTEVLTQI  174 (217)
Q Consensus       166 ~~~~i~~~~  174 (217)
                      +|+.|.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=5.7e-30  Score=186.96  Aligned_cols=162  Identities=22%  Similarity=0.349  Sum_probs=129.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCc-CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNE-FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .....++|+++|.+|+|||||+++|.+.. +...+.++.+  .....+.+++  +.+.+|||||++.+...+..+++.+|
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ   92 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence            34568999999999999999999999987 4555556655  4444555554  68999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCC---CCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCC
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTD---SNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALE  159 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~  159 (217)
                      ++++|+|++++.+++.+..|+..+.....   .+.|+++|+||+|+.+  ....++..+++.     ..+++++++||++
T Consensus        93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A           93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIK  170 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence            99999999999999999888888776543   4799999999999965  345555665553     2357899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQIYH  176 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~~~  176 (217)
                      +.|++++|++|.+.+.+
T Consensus       171 ~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          171 GEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TBTHHHHHHHHHHHC--
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999987754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=6.1e-31  Score=187.46  Aligned_cols=156  Identities=17%  Similarity=0.348  Sum_probs=122.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++|.++.+.. +.+|.+.  ....+...  .+.+.+|||||++.+...+..+++++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999988754 3455553  23334333  377999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ....+.....     ...+++++++||+++.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999988888876542 257999999999999653  2223322221     1234679999999999999999


Q ss_pred             HHHHHHHHH
Q 027894          168 TEVLTQIYH  176 (217)
Q Consensus       168 ~~i~~~~~~  176 (217)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999987653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.8e-30  Score=186.14  Aligned_cols=159  Identities=18%  Similarity=0.317  Sum_probs=126.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.++.+.. +.++.+.  ....+.+.+  ..+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            346899999999999999999999988754 4455543  344455554  77999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHH-----HHHcCCcEEEeccCCCCCHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAF-----AERENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      +|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+..  ...+....     +...+++++++||+++.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            99999999999999888877765432 679999999999996532  22222222     22345689999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027894          165 NAFTEVLTQIYH  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999988753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.3e-29  Score=184.78  Aligned_cols=161  Identities=19%  Similarity=0.313  Sum_probs=129.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+.++..  +...  .+.+.+|||||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            3457999999999999999999999998877777777766543  3344  37789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNV  163 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v  163 (217)
                      ++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...  ...++......     ..+++++++||+++.|+
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            99999999999999988888876542 267999999999999653  23333222211     23467999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          164 ENAFTEVLTQIYH  176 (217)
Q Consensus       164 ~~~~~~i~~~~~~  176 (217)
                      +++|++|.+.+.+
T Consensus       173 ~~l~~~l~~~~~~  185 (188)
T 1zd9_A          173 DITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=2.2e-29  Score=183.11  Aligned_cols=160  Identities=19%  Similarity=0.325  Sum_probs=129.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.+.. ...+.+|.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            467999999999999999999999988 55555666643  44455554  78899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~  164 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+...     ..+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999988888776542 267999999999999653  23333333322     245689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          165 NAFTEVLTQIYHV  177 (217)
Q Consensus       165 ~~~~~i~~~~~~~  177 (217)
                      ++|++|.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.4e-29  Score=185.03  Aligned_cols=155  Identities=17%  Similarity=0.243  Sum_probs=127.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|++|||||||+++|.+..+.. +.++.+.  ....+.+++  +.+.+|||||++.+...+..+++.+|++++
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            45799999999999999999999988753 3455544  345566666  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH------------cCCcEEEeccC
Q 027894           92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAER------------ENTFFMETSAL  158 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~  158 (217)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+..  .+..++..+.+..            .+++++++||+
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  174 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV  174 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence            999999999999999988876543 26799999999999975  4566666665442            34679999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 027894          159 ESMNVENAFTEVLTQ  173 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~  173 (217)
                      +++|++++|++|.+.
T Consensus       175 ~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          175 MRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTBSHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHhh
Confidence            999999999998754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=6.3e-30  Score=188.10  Aligned_cols=155  Identities=19%  Similarity=0.259  Sum_probs=121.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|++|||||||+++|.++.+.. +.+|.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|++++
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            45799999999999999999999887643 34554443  34555666  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----------------cCCcEE
Q 027894           92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----------------ENTFFM  153 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~  153 (217)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+..  .+..+++.+++..                 .+++++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  176 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence            999999999999999988886643 26799999999999965  5667777776652                 345799


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 027894          154 ETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       154 ~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      ++||++|+|++++|++|.+.
T Consensus       177 ~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          177 MCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=8.2e-31  Score=190.63  Aligned_cols=165  Identities=18%  Similarity=0.361  Sum_probs=123.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC--cCCCCCCcccceeEEEEEEEE---CCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRV---EDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+||+++|++|||||||+++|.+.  .+...+.+|.+.++....+.+   ++..+.+.+|||+|++.+...+..+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  444555677777766555443   235678999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC---HHHHHHHHHHcCCc----EEEeccCC
Q 027894           88 GALLVYDVTRH-VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS---TEDAKAFAERENTF----FMETSALE  159 (217)
Q Consensus        88 ~ii~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  159 (217)
                      ++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+.+.   .+....++...+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999997 58999999998887654 579999999999986543322   23345555566776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHHHh
Q 027894          160 SM-NVENAFTEVLTQIYHVV  178 (217)
Q Consensus       160 ~~-~v~~~~~~i~~~~~~~~  178 (217)
                      +. +++++++.|.+.+.+..
T Consensus       161 ~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC-
T ss_pred             CchhHHHHHHHHHHHHhccc
Confidence            96 99999999988876544

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=1.9e-30  Score=190.01  Aligned_cols=158  Identities=16%  Similarity=0.346  Sum_probs=120.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|||||||+++|.++.+.. +.+|.+  +....+...+  +.+.+|||||++.+...+..+++.+|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            456999999999999999999999887753 334544  3344454544  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  164 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||+++.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999988888876543 257999999999999653  2223322221     1234579999999999999


Q ss_pred             HHHHHHHHHHH
Q 027894          165 NAFTEVLTQIY  175 (217)
Q Consensus       165 ~~~~~i~~~~~  175 (217)
                      ++|++|.+.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.4e-29  Score=183.25  Aligned_cols=160  Identities=20%  Similarity=0.342  Sum_probs=125.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|||||||+++|.++.+. .+.+|.+..  ...+.+++  ..+.+|||||++.+...+..+++++|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            34699999999999999999999988775 444555533  33444554  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~  164 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+...     ..+++++++||+++.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999988887653 26799999999999965  334444444432     245689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          165 NAFTEVLTQIYHV  177 (217)
Q Consensus       165 ~~~~~i~~~~~~~  177 (217)
                      ++|++|.+.+...
T Consensus       167 ~l~~~l~~~~~~~  179 (187)
T 1zj6_A          167 QGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=3.7e-29  Score=181.44  Aligned_cols=159  Identities=22%  Similarity=0.329  Sum_probs=124.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|||||||+++|.+..+. .+.++.+.  ....+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45799999999999999999999988653 23455553  334455554  78899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  164 (217)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++..+..     ...+++++++||++++|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            9999999999999988888775542 2679999999999997532  333332221     1234679999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027894          165 NAFTEVLTQIYH  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      ++|++|.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=8.1e-30  Score=184.82  Aligned_cols=158  Identities=20%  Similarity=0.351  Sum_probs=125.0

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+++|.+|+|||||+++|.+..+ ..+.++.+...  ..+.+++  ..+.+|||||++.+...+..+++.+|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            345689999999999999999999999887 34445555443  3444555  789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCC
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMN  162 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  162 (217)
                      +++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+..  ....++..+...     ..+++++++||+++.|
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence            999999999999999988888876543 26799999999999965  234444444332     2456899999999999


Q ss_pred             HHHHHHHHHHH
Q 027894          163 VENAFTEVLTQ  173 (217)
Q Consensus       163 v~~~~~~i~~~  173 (217)
                      ++++|++|.+.
T Consensus       170 i~~l~~~l~~~  180 (181)
T 2h17_A          170 LCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=3.4e-29  Score=181.56  Aligned_cols=161  Identities=19%  Similarity=0.336  Sum_probs=126.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|||||||+++|.++.+ ..+.++.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999998877 3444565543  33444554  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----cCCcEEEeccCCCCCHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----ENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~  164 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+....     .+++++++||++++|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999888887653 367999999999999652  344444443322     23579999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027894          165 NAFTEVLTQIYHVV  178 (217)
Q Consensus       165 ~~~~~i~~~~~~~~  178 (217)
                      ++|++|.+.+.+.+
T Consensus       169 ~l~~~l~~~~~~~q  182 (183)
T 1moz_A          169 EGLDWLIDVIKEEQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=5.1e-30  Score=187.04  Aligned_cols=160  Identities=17%  Similarity=0.285  Sum_probs=126.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.++.+.. +.+|.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999999887654 34555533  33444554  78999999999999888999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  164 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+.....     ...+++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999988887776543 2679999999999996532  222222221     2235679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          165 NAFTEVLTQIYHV  177 (217)
Q Consensus       165 ~~~~~i~~~~~~~  177 (217)
                      ++|++|.+.+.+.
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1.8e-28  Score=193.66  Aligned_cols=163  Identities=31%  Similarity=0.503  Sum_probs=142.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            458999999999999999999999988777767765444 4556678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEecc
Q 027894           92 VYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSA  157 (217)
Q Consensus        92 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa  157 (217)
                      |||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..++...++...++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999986 6887777655 48999999999999643            56778889999999997 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 027894          158 LESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       158 ~~~~~v~~~~~~i~~~~~~  176 (217)
                      +++.|++++|++|.+.++.
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999988763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=8.3e-30  Score=187.11  Aligned_cols=163  Identities=17%  Similarity=0.198  Sum_probs=121.4

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEE--EEEE-CCeEEEEEEEeCCCchhhhhhh---H
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR--SIRV-EDKIVKAQIWDTAGQERYRAIT---S   80 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~Dt~G~~~~~~~~---~   80 (217)
                      +......+||+++|.+|||||||++++.+... ..  ++.+.+....  ...+ ++..+.+.+|||||++.+....   .
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   90 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE   90 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence            34566789999999999999999998877432 22  3333333322  2223 2556789999999999887666   8


Q ss_pred             hhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC-------cccCCHHHHHHHHH----H
Q 027894           81 AYYRGAVGALLVYDVTRH--VTFENVERWLKELRGHTDSNIVIMLVGNKADLRH-------LCAVSTEDAKAFAE----R  147 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-------~~~~~~~~~~~~~~----~  147 (217)
                      .+++.+|++++|||++++  .++..+..|+..+.... .+.|+++|+||+|+.+       .+.+..++...++.    .
T Consensus        91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            899999999999999997  66666677777664333 6899999999999754       23445566677777    6


Q ss_pred             cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          148 ENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      .+++|+++||++ .|++++|+.+++.+
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CCcceEEEEech-hhHHHHHHHHHHHh
Confidence            788999999999 99999999998865

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.4e-31  Score=197.75  Aligned_cols=162  Identities=32%  Similarity=0.517  Sum_probs=135.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4579999999999999999999999888766666654433 344456677788899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc------------cCCHHHHHHHHHHcCC-cEEEec
Q 027894           91 LVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC------------AVSTEDAKAFAERENT-FFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  156 (217)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+..++...++...++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999886 7877776654 479999999999996532            4555677778888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 027894          157 ALESMNVENAFTEVLTQI  174 (217)
Q Consensus       157 a~~~~~v~~~~~~i~~~~  174 (217)
                      |+++.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=1.5e-27  Score=179.02  Aligned_cols=167  Identities=20%  Similarity=0.173  Sum_probs=121.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc------hhh---hhhhHh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ------ERY---RAITSA   81 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~---~~~~~~   81 (217)
                      ...++|+|+|.+|||||||+++|++..+.....+..+.......+...+  ..+.+|||||+      +..   ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4579999999999999999999999876533333333334444444444  67899999998      331   122344


Q ss_pred             hhcCCcEEEEEEeCCChhhHH--HHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH---HHHHHHHHcC--CcEEE
Q 027894           82 YYRGAVGALLVYDVTRHVTFE--NVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE---DAKAFAEREN--TFFME  154 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~  154 (217)
                      ++..+|++++|||++++.+++  ....|+..+.... .+.|+++|+||+|+.+.+.+..+   ....++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            578899999999999988764  2345666665432 47999999999999776666654   4566667776  88999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894          155 TSALESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      +||+++.|++++|++|.+.+.+.+..
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999877654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=4.7e-28  Score=173.04  Aligned_cols=153  Identities=19%  Similarity=0.200  Sum_probs=115.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh------hhhHhhhc--
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR------AITSAYYR--   84 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--   84 (217)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||++.+.      .....+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            48999999999999999999998776555445555555555565665  578999999987653      33455554  


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      .+|++++|+|+++...   ...|+..+..   .+.|+++|+||+|+...+.+.. +..+++...+++++++||++++|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999988543   3456666654   4689999999999865444432 3567777889999999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          165 NAFTEVLTQI  174 (217)
Q Consensus       165 ~~~~~i~~~~  174 (217)
                      ++|+++.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.5e-29  Score=190.97  Aligned_cols=169  Identities=28%  Similarity=0.376  Sum_probs=123.8

Q ss_pred             cCCCCCCeeeEEEEEcCC---------CCChHHHHHHHhh---CcCCCCCCccc-ceeEEEEE--------------EEE
Q 027894            5 RADEDYDYLYKVVLIGDS---------GVGKSNLLSRFTR---NEFSLESKSTI-GVEFATRS--------------IRV   57 (217)
Q Consensus         5 ~~~~~~~~~~~I~vvG~~---------~~GKtsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~   57 (217)
                      +.....+..+||+++|.+         |||||||+++|++   ..+...+.++. +.++....              ..+
T Consensus        11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~   90 (255)
T 3c5h_A           11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE   90 (255)
T ss_dssp             CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred             cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence            445566778999999999         9999999999999   45544444443 22222111              113


Q ss_pred             CCeEEEEEEEe-----------------------CCCchhhhhhhHhhhc---------------------CCcEEEEEE
Q 027894           58 EDKIVKAQIWD-----------------------TAGQERYRAITSAYYR---------------------GAVGALLVY   93 (217)
Q Consensus        58 ~~~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~ii~v~   93 (217)
                      ++..+.+.+||                       ++|++.+..++..+++                     ++|++++||
T Consensus        91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~  170 (255)
T 3c5h_A           91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI  170 (255)
T ss_dssp             -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred             CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence            55678899999                       5566666666666666                     799999999


Q ss_pred             eCCCh--hhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHHH
Q 027894           94 DVTRH--VTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-ENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        94 d~~~~--~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      |++++  .+++.+..|+..+... ...+.|+++|+||+|+...+.+  ++...++.. .+++++++||+++.|++++|++
T Consensus       171 D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~  248 (255)
T 3c5h_A          171 DVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFST  248 (255)
T ss_dssp             ECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred             ECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHH
Confidence            99998  9999999999888654 2357999999999999654433  566777766 4889999999999999999999


Q ss_pred             HHHHHH
Q 027894          170 VLTQIY  175 (217)
Q Consensus       170 i~~~~~  175 (217)
                      |.+.+.
T Consensus       249 l~~~l~  254 (255)
T 3c5h_A          249 LVQLID  254 (255)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=1.9e-27  Score=171.50  Aligned_cols=159  Identities=19%  Similarity=0.215  Sum_probs=121.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+.+.....+.+++.  .+.+|||||++.+...+..++..+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            45689999999999999999999999887766666666665666667764  5789999999999888888899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC---------CcEEEeccCCCC
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN---------TFFMETSALESM  161 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~  161 (217)
                      +|+|++++...+..+ ++..+.   ..+.|+++|+||+|+...   ..++........+         ++++++||+++.
T Consensus        84 ~v~d~~~~~~~~~~~-~l~~~~---~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (178)
T 2lkc_A           84 LVVAADDGVMPQTVE-AINHAK---AANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE  156 (178)
T ss_dssp             EEEETTCCCCHHHHH-HHHHHG---GGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred             EEEECCCCCcHHHHH-HHHHHH---hCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence            999998854322222 222222   257899999999999652   2233333333221         579999999999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 027894          162 NVENAFTEVLTQIYHVV  178 (217)
Q Consensus       162 ~v~~~~~~i~~~~~~~~  178 (217)
                      |++++|++|.+.+...+
T Consensus       157 gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          157 GLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhhhhhc
Confidence            99999999999877654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=5.8e-28  Score=179.49  Aligned_cols=160  Identities=16%  Similarity=0.191  Sum_probs=112.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCe-EEEEEEEeCCCchhhhh-hhHhhhcCCcE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK-IVKAQIWDTAGQERYRA-ITSAYYRGAVG   88 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~   88 (217)
                      ...++|+++|.+|+|||||+++|++..+...+.+ .+.....  +.+++. .+.+.+|||||++.+.. .+..+++.+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            4568999999999999999999999988766643 3333333  445543 57899999999999987 78889999999


Q ss_pred             EEEEEeCCChh-hHHHHHH-HHHHHhc--cCCCCCcEEEEEeCCCCCCcccCC--HHHHHHHHH----------------
Q 027894           89 ALLVYDVTRHV-TFENVER-WLKELRG--HTDSNIVIMLVGNKADLRHLCAVS--TEDAKAFAE----------------  146 (217)
Q Consensus        89 ii~v~d~~~~~-s~~~~~~-~~~~l~~--~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~----------------  146 (217)
                      +++|||+++.. ++..... |...+..  ....+.|+++|+||+|+.......  .+.+.....                
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 4555544 4333332  123579999999999997533211  111111111                


Q ss_pred             -----------------Hc--CCcEEEeccCCC------CCHHHHHHHHHHH
Q 027894          147 -----------------RE--NTFFMETSALES------MNVENAFTEVLTQ  173 (217)
Q Consensus       147 -----------------~~--~~~~~~~Sa~~~------~~v~~~~~~i~~~  173 (217)
                                       ..  +++|+++||+++      .|++++|++|.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                             11  567999999999      9999999999875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=1.9e-27  Score=185.90  Aligned_cols=161  Identities=20%  Similarity=0.296  Sum_probs=126.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh-----hhhhHhhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY-----RAITSAYY   83 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~   83 (217)
                      ..+||+++|.+|||||||+++|+++....   .+.+|.+..+.  .+.+.+ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            46899999999999999999998873322   34445444443  344444 478999999999888     67888899


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHhccC--CCCCcEEEEEeCCCCCC--ccc----CCHHHHHHHHHHcC---CcE
Q 027894           84 RGAVGALLVYDVTRHVTFENVERWLKELRGHT--DSNIVIMLVGNKADLRH--LCA----VSTEDAKAFAEREN---TFF  152 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  152 (217)
                      +++|++++|||++++.+++.+..|...+....  .++.|+++|+||+|+..  .+.    +..+++.+++..++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877755444322  26799999999999975  333    55577888888887   789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHH
Q 027894          153 METSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       153 ~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      +++||++ .++.++|..+++.+..
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcC
Confidence            9999999 8999999988875543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=5.1e-27  Score=185.00  Aligned_cols=158  Identities=17%  Similarity=0.336  Sum_probs=119.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+|+|.+|+|||||+++|.+..+.... +|.+..+  ..+...+  +.+.+|||||++.+...+..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4579999999999999999999998865433 4444333  3344444  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  165 (217)
                      |||++++.+++.+..++..+.... ..++|+++|+||+|+.+..  ..++......     ..+++++++||+++.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            999999999999988777665443 2589999999999997532  3333332222     1345799999999999999


Q ss_pred             HHHHHHHHHHH
Q 027894          166 AFTEVLTQIYH  176 (217)
Q Consensus       166 ~~~~i~~~~~~  176 (217)
                      +|++|.+.+.+
T Consensus       317 l~~~l~~~l~~  327 (329)
T 3o47_A          317 GLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999987753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=1.4e-27  Score=173.90  Aligned_cols=158  Identities=22%  Similarity=0.248  Sum_probs=118.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC-----------chhhhhhhHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG-----------QERYRAITSAY   82 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~   82 (217)
                      ++|+++|.+|+|||||+++|.+..+...+.++.+....  .+.+.    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999999877666565443332  33333    589999999           67777778778


Q ss_pred             hcC-CcEEEEEEeCCChhhHHHH-HHHHHH---------HhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc
Q 027894           83 YRG-AVGALLVYDVTRHVTFENV-ERWLKE---------LRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF  151 (217)
Q Consensus        83 ~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~---------l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  151 (217)
                      ++. ++++++++++.+..+++.+ ..|...         +......+.|+++|+||+|+....   .++..+++...+++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 7777777777777777765 455432         111122579999999999997643   56677888887764


Q ss_pred             -------EEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894          152 -------FMETSALESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       152 -------~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                             ++++||+++.|++++|++|.+.+.+.+.+
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  188 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR  188 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence                   79999999999999999999988765543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=8.4e-27  Score=170.65  Aligned_cols=159  Identities=16%  Similarity=0.191  Sum_probs=110.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC----------chhhhhh
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----------QERYRAI   78 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~   78 (217)
                      +....++|+++|.+|+|||||+++|++..+.....++.+.+........+.   .+.+|||||          ++.+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            345679999999999999999999999876555545555444444444444   489999999          7778887


Q ss_pred             hHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH--HHHHH-HHHHcCCcE
Q 027894           79 TSAYYRGA---VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST--EDAKA-FAERENTFF  152 (217)
Q Consensus        79 ~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~  152 (217)
                      +..+++.+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+....+...  ++..+ +....++++
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence            88888776   9999999999987776543 2222322   5689999999999976443322  22222 222346789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 027894          153 METSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       153 ~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      +++||+++.|++++|++|.+.+
T Consensus       172 ~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEccCCCCHHHHHHHHHHHh
Confidence            9999999999999999998875

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=7.6e-27  Score=169.90  Aligned_cols=158  Identities=19%  Similarity=0.192  Sum_probs=123.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh------hhhHhhhc
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR------AITSAYYR   84 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~   84 (217)
                      ...++|+++|++|||||||+++|.+..+.....++.+.+.....+...+  ..+.+|||||++.+.      ..+..++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            3568999999999999999999998765555556656666666666665  678999999987663      34555554


Q ss_pred             --CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894           85 --GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN  162 (217)
Q Consensus        85 --~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                        .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+.....+. .+...++...+++++++||+++.|
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence              5999999999875   4555667766654   568999999999986544443 346777788899999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQIYHV  177 (217)
Q Consensus       163 v~~~~~~i~~~~~~~  177 (217)
                      ++++|+++.+.+.+.
T Consensus       156 v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          156 IEELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=4.9e-28  Score=188.00  Aligned_cols=159  Identities=17%  Similarity=0.188  Sum_probs=120.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh---hhHhhhcCCcE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA---ITSAYYRGAVG   88 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~   88 (217)
                      ||+++|..|||||||++++.+..++.   ...+|.+.++..    +. ..+++++|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887664332   245666665543    22 347899999999999964   46889999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc-------ccCCHHHHHHHHHH----cCCcEEEe
Q 027894           89 ALLVYDVTRH--VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL-------CAVSTEDAKAFAER----ENTFFMET  155 (217)
Q Consensus        89 ii~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  155 (217)
                      +++|||+++.  .+++.+..|+..+.... ++.|+++++||+|+..+       +.+..+++.++++.    .+++|++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999998  33333444455444333 68999999999999753       34556667777775    67899999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894          156 SALESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      ||++ .++.+.|..+++.+++....
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~~  178 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELSF  178 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHHH
Confidence            9998 58999999999887765543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=2.7e-26  Score=162.78  Aligned_cols=150  Identities=17%  Similarity=0.172  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------YRAITSAYYRG   85 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   85 (217)
                      +||+++|.+|+|||||+++|.+..+.. ...++.+.+.....+...+.  .+.+|||||+..       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            689999999999999999999987542 22334444555556666664  689999999876       45566778899


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVE  164 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  164 (217)
                      +|++++|+|++++.+... ..+...+..   .+.|+++|+||+|+.+..    ++..+++ ..++ +++++||+++.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998654332 112222222   468999999999997542    2334444 5677 79999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          165 NAFTEVLTQI  174 (217)
Q Consensus       165 ~~~~~i~~~~  174 (217)
                      ++|+++.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=4e-26  Score=174.07  Aligned_cols=156  Identities=17%  Similarity=0.130  Sum_probs=120.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh------hhHhhh-
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA------ITSAYY-   83 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~-   83 (217)
                      ...++|+++|.+|+|||||+++|++..+.....++.+.+.....+...+  ..+.+|||||...+..      ....++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4568999999999999999999999876554445555555555555554  6799999999876643      224454 


Q ss_pred             -cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894           84 -RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN  162 (217)
Q Consensus        84 -~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                       ..+|++++|+|+++..+.   ..|...+..   .+.|+++|+||+|+...+.+.. +...++...+++++++||+++.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             589999999999987543   335555544   4699999999999865444442 36778888899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQIY  175 (217)
Q Consensus       163 v~~~~~~i~~~~~  175 (217)
                      ++++|+++.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=1.2e-25  Score=175.80  Aligned_cols=165  Identities=18%  Similarity=0.133  Sum_probs=126.6

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchh----------h
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQER----------Y   75 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~   75 (217)
                      .+..+..-.|+++|.+|||||||+|+|++..+..... +..+........... ...++.+|||||+..          +
T Consensus         4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHH
Confidence            4566778899999999999999999999988764332 222223333333333 136789999999743          3


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC--CcEE
Q 027894           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN--TFFM  153 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~  153 (217)
                      ......+++.+|++++|+|++++.+..+...|+..+..   .+.|+++|+||+|+.............+....+  .+++
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence            45667788999999999999999888887777777765   468999999999997444556667777777775  7899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHH
Q 027894          154 ETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       154 ~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      ++||+++.|++++|+++.+.+.
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEeCCCCCCHHHHHHHHHHhCc
Confidence            9999999999999999988764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=7.6e-27  Score=167.91  Aligned_cols=154  Identities=21%  Similarity=0.203  Sum_probs=112.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh----h--h--hHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR----A--I--TSAY   82 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~--~--~~~~   82 (217)
                      ..++|+++|.+|+|||||+++|.+..+.. ...++.+.++....+.+++.  .+.+|||||++.+.    .  .  ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            35899999999999999999999876432 22344445556666767764  57899999975421    1  1  1235


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894           83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      ++.+|++++|+|++++.+++. ..|+..+......+.|+++|+||+|+.+...       .++...+++++++||+++.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            789999999999999888763 4666666655446799999999999854211       11222467899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQIY  175 (217)
Q Consensus       163 v~~~~~~i~~~~~  175 (217)
                      ++++|++|.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=1.4e-25  Score=163.91  Aligned_cols=159  Identities=19%  Similarity=0.245  Sum_probs=115.3

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC----------chhhh
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----------QERYR   76 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~   76 (217)
                      +.+....++|+++|.+|+|||||+++|++..... ..++.+.+........+.   .+.+|||||          ++.+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             hCCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence            4455677999999999999999999999987433 234444443333333333   478999999          66777


Q ss_pred             hhhHhhhcCC---cEEEEEEeCCChhhHHH--HHHHHHHHhccCCCCCcEEEEEeCCCCCCcc--cCCHHHHHHHHHHc-
Q 027894           77 AITSAYYRGA---VGALLVYDVTRHVTFEN--VERWLKELRGHTDSNIVIMLVGNKADLRHLC--AVSTEDAKAFAERE-  148 (217)
Q Consensus        77 ~~~~~~~~~~---d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~-  148 (217)
                      ..+..+++.+   |++++|+|+++..+...  +..|+..      .+.|+++|+||+|+.+..  ....++...++... 
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence            7777777665   99999999987654333  2333332      368999999999996432  23335555666653 


Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          149 NTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       149 ~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      +++++++||+++.|++++|++|.+.+.
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            478999999999999999999998774

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=8.3e-27  Score=195.01  Aligned_cols=165  Identities=22%  Similarity=0.263  Sum_probs=125.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEE------EE--ECCeEEEEEEEeCCCchhhhhhhH
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS------IR--VEDKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      .....+||+++|.+|||||||+++|++..+.....++.+.++....      +.  ..+..+.+.+|||||++.+...+.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3566899999999999999999999999987777777777666542      11  123357899999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      .+++.+|++++|+|+++.   +.+..|+..+.... .+.|+++|+||+|+...+.+..++...++...+++++++||+++
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999998765   45677887777665 57999999999999877778888888888889999999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027894          161 MNVENAFTEVLTQIYHV  177 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~~~  177 (217)
                      .|++++|+.|.+.+.+.
T Consensus       193 ~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             --CTTHHHHHHHHHTCT
T ss_pred             cCHHHHHHHHHHHHhcc
Confidence            99999999999887653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=4.9e-26  Score=173.36  Aligned_cols=151  Identities=16%  Similarity=0.138  Sum_probs=116.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh----------hhHhhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA----------ITSAYY   83 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~   83 (217)
                      .+|+++|.+|||||||+|+|++........++.+.+.....+.+.+.  .+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998765555566667777777777774  789999999866543          455566


Q ss_pred             --cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCC
Q 027894           84 --RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESM  161 (217)
Q Consensus        84 --~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (217)
                        ..+|++++|+|+++..+...+   ...+..   .+.|+++|+||+|+...+.... ....+....+++++++||+++.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l---~~~l~~---~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYL---TSQLFE---LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHH---HHHHTT---SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHH---HHHHHH---cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              899999999999986554333   333332   4799999999999864333222 2445677789999999999999


Q ss_pred             CHHHHHHHHHHH
Q 027894          162 NVENAFTEVLTQ  173 (217)
Q Consensus       162 ~v~~~~~~i~~~  173 (217)
                      |++++|++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999775

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=5.8e-26  Score=174.18  Aligned_cols=153  Identities=19%  Similarity=0.161  Sum_probs=114.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh------hhhHhhhc-
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR------AITSAYYR-   84 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   84 (217)
                      ..++|+++|.+|||||||+++|++........++.+.+.  ....+.. ...+.+|||||+..+.      .....++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            358999999999999999999998764443334333333  3333443 4678999999987664      44556665 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894           85 -GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        85 -~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (217)
                       .+|++++|+|+++..+.   ..|...+..   .+.|+++|+||+|+...+.+. .+...++...+++++++||+++.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999886543   345555543   479999999999986544333 3456777888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027894          164 ENAFTEVLTQI  174 (217)
Q Consensus       164 ~~~~~~i~~~~  174 (217)
                      +++|+++.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999997754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=1.5e-25  Score=167.36  Aligned_cols=167  Identities=16%  Similarity=0.113  Sum_probs=112.0

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCC----------chhhh
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAG----------QERYR   76 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G----------~~~~~   76 (217)
                      .+....++|+++|.+|+|||||+++|++.........+.+.+......... .....+.+|||||          ++.+.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            344567999999999999999999999987322222222223333333333 3336789999999          45556


Q ss_pred             hhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC--HHHHHHHHHH----
Q 027894           77 AITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--TEDAKAFAER----  147 (217)
Q Consensus        77 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~----  147 (217)
                      .....+++.   +|++++|+|++++.+.. ...++..+..   .+.|+++|+||+|+.......  .+...+....    
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence            666666655   78899999998864422 2344455543   568999999999986533221  1222222222    


Q ss_pred             ---cCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          148 ---ENTFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       148 ---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                         .+++++++||+++.|++++|++|.+.+....
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence               4678999999999999999999998876543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=6.2e-25  Score=168.89  Aligned_cols=156  Identities=21%  Similarity=0.139  Sum_probs=119.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh------hhHhhh--
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA------ITSAYY--   83 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--   83 (217)
                      ..++|+++|++|||||||+++|++..+.....++.+.+.....+.+.+.  .+.+|||||+..+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            3589999999999999999999998775556666677777777777764  589999999876644      455555  


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894           84 RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (217)
                      .++|++++|+|+++...   ...+...+...  ...|+++|+||+|+...+..... ...+....+++++++||+++.|+
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence            68999999999988632   23333444332  23899999999998643333322 66777788999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027894          164 ENAFTEVLTQIY  175 (217)
Q Consensus       164 ~~~~~~i~~~~~  175 (217)
                      +++|+.+.+.+.
T Consensus       154 ~~l~~~i~~~~~  165 (271)
T 3k53_A          154 EELKRMIALMAE  165 (271)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.92  E-value=1e-25  Score=181.97  Aligned_cols=190  Identities=17%  Similarity=0.148  Sum_probs=132.0

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh-------
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI-------   78 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------   78 (217)
                      +.+....++|+++|..|+|||||+++|++..+.. ...+..+.+.....+.+.+. ..+.+|||||++.+...       
T Consensus        28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~  106 (423)
T 3qq5_A           28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEK  106 (423)
T ss_dssp             C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHH
Confidence            3445678999999999999999999999987642 23344445555556656553 27899999998765433       


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccC
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSAL  158 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                      +..++..+|++++|+|+...   +....|+..+...   +.|+++|+||+|+......  +...++...++++++++||+
T Consensus       107 ~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk  178 (423)
T 3qq5_A          107 ARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL  178 (423)
T ss_dssp             HHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred             HHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence            45578899999999998333   2345566666553   6899999999999765443  55666677788999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCceeeecCCCCccCcc
Q 027894          159 ESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVK  210 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (217)
                      ++.|++++|++|.+.+.+.   .  +..--....+.|+.+.+....+..++|
T Consensus       179 tg~gI~eL~~~L~~~l~~~---~--e~~l~~dLv~~gd~v~lv~pid~~~pk  225 (423)
T 3qq5_A          179 QKKGFDDIGKTISEILPGD---E--EIPYLGDLIDGGDLVILVVPIDLGAPK  225 (423)
T ss_dssp             CTTSTTTHHHHHHHHSCCC---C--CCCSCSCCCCTTCCEEEECCCSCCSST
T ss_pred             CCCCHHHHHHHHHHhhhhh---c--cCcchhhccccCceEEEEeeccccCcC
Confidence            9999999999999887533   1  111123467788888888777666654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=1.8e-25  Score=172.00  Aligned_cols=154  Identities=16%  Similarity=0.126  Sum_probs=114.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh----------hhhHhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR----------AITSAY   82 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~   82 (217)
                      .++|+++|.+|+|||||+|+|++..+.....++.+.+.....+...+  ..+.+|||||+..+.          ..+..+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            58999999999999999999999876555556666666666666655  457899999976654          223333


Q ss_pred             h--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894           83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES  160 (217)
Q Consensus        83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      +  ..+|++++|+|+++......+..   .+..   .+.|+++|+||+|+.+..... .....+.+..+++++++||++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~---~l~~---~~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTL---QLLE---LGIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHH---HHHH---HTCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHH---HHHh---cCCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            3  79999999999988655443333   3332   268999999999986433222 1245667778999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027894          161 MNVENAFTEVLTQIY  175 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~  175 (217)
                      .|++++|++|.+.+.
T Consensus       154 ~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          154 RGIEALKLAIDRYKA  168 (274)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999998876543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=1.1e-25  Score=167.57  Aligned_cols=145  Identities=17%  Similarity=0.263  Sum_probs=106.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE---SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      .....++|+++|++|+|||||+++|.+..+...   +.++.+..+         ....+.+|||||++.+...+..+++.
T Consensus         8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~   78 (218)
T 1nrj_B            8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT   78 (218)
T ss_dssp             --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence            355679999999999999999999999886542   223322211         33568999999999998888888877


Q ss_pred             ----CcEEEEEEeCC-ChhhHHHHHHHHHHHhcc----CCCCCcEEEEEeCCCCCCcccCC------HHHHHHHHHHcCC
Q 027894           86 ----AVGALLVYDVT-RHVTFENVERWLKELRGH----TDSNIVIMLVGNKADLRHLCAVS------TEDAKAFAERENT  150 (217)
Q Consensus        86 ----~d~ii~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~  150 (217)
                          +|++++|+|++ ++.++..+..|+..+...    ...+.|+++|+||+|+.....+.      .+++..++...++
T Consensus        79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~  158 (218)
T 1nrj_B           79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK  158 (218)
T ss_dssp             HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence                89999999999 888998888887776553    23679999999999997654433      4556677777778


Q ss_pred             cEEEeccCCCCC
Q 027894          151 FFMETSALESMN  162 (217)
Q Consensus       151 ~~~~~Sa~~~~~  162 (217)
                      +++++||+++.+
T Consensus       159 ~~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 SLNEVERKINEE  170 (218)
T ss_dssp             HHHC--------
T ss_pred             cccccccccccc
Confidence            899999998765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=2.5e-24  Score=175.81  Aligned_cols=162  Identities=17%  Similarity=0.181  Sum_probs=117.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhhhhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYRAIT   79 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~   79 (217)
                      +..++|+++|.+|+|||||+|+|++..+. ....++.+.+.....+..++.  .+.+|||||+          +.|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            45699999999999999999999998764 233344444444555666664  5899999997          5555443


Q ss_pred             H-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH-HHH----HcCCcEE
Q 027894           80 S-AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA-FAE----RENTFFM  153 (217)
Q Consensus        80 ~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~----~~~~~~~  153 (217)
                      . .+++.+|++++|+|++++.++++. .|+..+..   .+.|+++|+||+|+.+......++..+ +..    ..+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 477889999999999999888776 46555543   579999999999997655444333322 222    2368899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          154 ETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       154 ~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      ++||++|.|++++|+.+.+.+....
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEecccCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999998887654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.9e-23  Score=166.44  Aligned_cols=163  Identities=19%  Similarity=0.207  Sum_probs=121.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh---------hhhHh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR---------AITSA   81 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~   81 (217)
                      ...++|+++|.+|+|||||+++|.+........+..+.......+...+  ..+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999999875333223333334444444443  578999999964321         12224


Q ss_pred             hhcCCcEEEEEEeCCChh--hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894           82 YYRGAVGALLVYDVTRHV--TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE  159 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      +...+|++++|+|++++.  +++....|+..+.... .+.|+++|+||+|+.....  .++...++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence            456799999999999877  6777778888877654 2799999999999865332  2445666667889999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 027894          160 SMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~~~~~  178 (217)
                      |+|++++|++|.+.+....
T Consensus       320 g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHH
Confidence            9999999999999886654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=6e-24  Score=174.32  Aligned_cols=157  Identities=17%  Similarity=0.118  Sum_probs=99.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhh--------Hhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAIT--------SAY   82 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   82 (217)
                      ..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+++  ..+.+|||||++.+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            3589999999999999999999998643 23334445555556666776  578999999987654333        336


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894           83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      ++.+|++++|+|++++.+++.+..+...+...  .+.|+++|+||+|+......   ....+......+++++||+++.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence            78999999999999988875443333333322  26999999999999764332   22334433247899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQIY  175 (217)
Q Consensus       163 v~~~~~~i~~~~~  175 (217)
                      ++++|++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998775

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=1.1e-23  Score=172.92  Aligned_cols=164  Identities=16%  Similarity=0.155  Sum_probs=121.2

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCC----------chhhhhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----------QERYRAI   78 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~   78 (217)
                      ....++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++.  .+.+|||||          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            456799999999999999999999976532 223344444444445556664  789999999          6777665


Q ss_pred             hH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-----CCcE
Q 027894           79 TS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-----NTFF  152 (217)
Q Consensus        79 ~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~  152 (217)
                      .. .+++.+|++++|+|+++..+.. ...|...+..   .+.|+++|+||+|+.+.+....++..+.+...     ++++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            54 4778999999999998865433 2344444443   56999999999999876666667766666654     5889


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHHhh
Q 027894          153 METSALESMNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       153 ~~~Sa~~~~~v~~~~~~i~~~~~~~~~  179 (217)
                      +++||++|.|++++|+++.+.+.....
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998866553

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.91  E-value=3.2e-23  Score=161.24  Aligned_cols=156  Identities=21%  Similarity=0.173  Sum_probs=108.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhHh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--------YRAITSA   81 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~   81 (217)
                      ....+|+++|.+|+|||||+|+|++..+.... .+..+.......+...  ..++.+|||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            34568999999999999999999998875432 2222222222223333  36789999999754        4556677


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-C-CcEEEeccCC
Q 027894           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-N-TFFMETSALE  159 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~  159 (217)
                      +++.+|++++|+|++++.+..+ ..++..+.... .+.|+++|+||+|+.....    .....+..+ + .+++++||++
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred             HHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence            8899999999999998755432 22334554432 4799999999999864322    022223322 3 4689999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQI  174 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~  174 (217)
                      +.|++++|+.|.+.+
T Consensus       157 g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          157 ERQVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhc
Confidence            999999999987755

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=8.5e-24  Score=166.73  Aligned_cols=158  Identities=20%  Similarity=0.187  Sum_probs=118.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhhhHhhhc---CC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAITSAYYR---GA   86 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~---~~   86 (217)
                      .+|+++|.+|||||||+++|++........+..+.......+.+++. ..+.+|||||...    +..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            46899999999999999999987643322233333333334444431 4689999999643    3334444544   59


Q ss_pred             cEEEEEEeCCC---hhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC--CcEEEeccCC
Q 027894           87 VGALLVYDVTR---HVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN--TFFMETSALE  159 (217)
Q Consensus        87 d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  159 (217)
                      |++++|+|+++   ..+++++..|+..+.....  .++|+++|+||+|+....    +...++.....  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7889999999988887652  579999999999986422    34566666665  6899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQIYH  176 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~~~  176 (217)
                      ++|+++++++|.+.+.+
T Consensus       314 g~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          314 REGLRELLFEVANQLEN  330 (342)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999988753

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=4.4e-23  Score=169.36  Aligned_cols=154  Identities=21%  Similarity=0.268  Sum_probs=116.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCch-hhh--------hhhHhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-RYR--------AITSAY   82 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~--------~~~~~~   82 (217)
                      .++|+++|.+|+|||||+|+|++..+. ....++.+.+.....+.+++  ..+.+|||||.. .+.        .....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999998643 23334555566666666776  568999999987 442        223457


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894           83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      ++.+|++++|+|++++.++++.+ ++..+     .+.|+++|+||+|+...  ...++...++ ..+++++++||++++|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence            78999999999999988876643 23333     36899999999999652  3444554443 2457899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQIYHV  177 (217)
Q Consensus       163 v~~~~~~i~~~~~~~  177 (217)
                      ++++|++|.+.+...
T Consensus       392 i~eL~~~l~~~~~~~  406 (482)
T 1xzp_A          392 LEKLEESIYRETQEI  406 (482)
T ss_dssp             HHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999987643

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.89  E-value=1.2e-22  Score=160.72  Aligned_cols=125  Identities=18%  Similarity=0.233  Sum_probs=103.5

Q ss_pred             EEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHhccCC-CCCc
Q 027894           52 TRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRGHTD-SNIV  120 (217)
Q Consensus        52 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~~~-~~~p  120 (217)
                      ...+.+..  +.+.+|||+|++.++..|..++++++++|+|||+++          ..++.+...|+..+..... .+.|
T Consensus       185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p  262 (353)
T 1cip_A          185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS  262 (353)
T ss_dssp             EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred             EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence            34444543  789999999999999999999999999999999999          4678888888888876432 6799


Q ss_pred             EEEEEeCCCCCCcc---------------cCCHHHHHHHHH-----------HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          121 IMLVGNKADLRHLC---------------AVSTEDAKAFAE-----------RENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       121 ~iiv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      +++++||+|+..++               .+..+++..++.           ..++.+++|||+++.|++++|+++.+.+
T Consensus       263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i  342 (353)
T 1cip_A          263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  342 (353)
T ss_dssp             EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence            99999999985322               356788888876           3567899999999999999999999988


Q ss_pred             HHHh
Q 027894          175 YHVV  178 (217)
Q Consensus       175 ~~~~  178 (217)
                      .+..
T Consensus       343 ~~~~  346 (353)
T 1cip_A          343 IKNN  346 (353)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=1.9e-22  Score=166.15  Aligned_cols=160  Identities=18%  Similarity=0.131  Sum_probs=113.5

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCc-------CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNE-------FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAIT   79 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   79 (217)
                      .......++|+++|+.++|||||+++|++..       +........+.+.....+.+++  ..+.+|||||++.|...+
T Consensus        13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~   90 (482)
T 1wb1_A           13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAV   90 (482)
T ss_dssp             CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHH
T ss_pred             hhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHH
Confidence            3344568999999999999999999999876       2222223333333333444555  678999999999999889


Q ss_pred             HhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc--cCCHHHHHHHHHHc----CC
Q 027894           80 SAYYRGAVGALLVYDVTRH---VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC--AVSTEDAKAFAERE----NT  150 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~----~~  150 (217)
                      ...+..+|++++|+|+++.   .+.+.+.    .+..   .++|+++|+||+|+.+..  +...++..+++...    ++
T Consensus        91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~  163 (482)
T 1wb1_A           91 VSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS  163 (482)
T ss_dssp             HHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred             HHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccc
Confidence            9999999999999999884   3333222    2222   357889999999996522  11234455566555    57


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          151 FFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       151 ~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      +++++||++++|+++++++|.+.+.
T Consensus       164 ~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          164 SIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHHhhc
Confidence            8999999999999999999999876

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=2.3e-22  Score=164.31  Aligned_cols=152  Identities=20%  Similarity=0.292  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh---------hhhhhHhhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER---------YRAITSAYY   83 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~   83 (217)
                      .+|+++|.+|||||||+|+|++..... ...++.+.+.....+.+.+.  .+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            479999999999999999999887532 33344455555566667764  578999999653         345667789


Q ss_pred             cCCcEEEEEEeCCChhhHHH--HHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH-HHHHHHcCC-cEEEeccCC
Q 027894           84 RGAVGALLVYDVTRHVTFEN--VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA-KAFAERENT-FFMETSALE  159 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~  159 (217)
                      +.+|++++|+|+.++.+..+  +..|+..      .++|+++|+||+|+...  . ..+. .+++ ..++ +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999988655433  2333322      36899999999998532  1 1222 3343 4566 689999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~~~~  177 (217)
                      |.|++++|+++.+.+.+.
T Consensus       150 g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhcccc
Confidence            999999999999988643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=7.5e-22  Score=159.65  Aligned_cols=165  Identities=16%  Similarity=0.124  Sum_probs=115.4

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEE-------EE---------EE---CCeEEEEEEEe
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR-------SI---------RV---EDKIVKAQIWD   68 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~l~D   68 (217)
                      +.....++|+++|++|+|||||+++|++.......... .......       .+         ..   ......+.+||
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD   81 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID   81 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEE
Confidence            34566799999999999999999999985443211100 0000000       00         00   11236799999


Q ss_pred             CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHHHHHHH
Q 027894           69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDAKAFAE  146 (217)
Q Consensus        69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~  146 (217)
                      |||++.|...+...+..+|++++|+|++++.++.....++..+....  ..|+++|+||+|+.+..+.  ..++..++..
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999876666666666554432  2589999999998653211  1122333332


Q ss_pred             Hc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          147 RE---NTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       147 ~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      ..   +++++++||+++.|+++++++|.+.+.
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            22   578999999999999999999987654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.89  E-value=4.4e-22  Score=166.99  Aligned_cols=159  Identities=18%  Similarity=0.220  Sum_probs=112.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc--CCC-----CC------CcccceeEEEE--EEEE---CCeEEEEEEEeCCCch
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNE--FSL-----ES------KSTIGVEFATR--SIRV---EDKIVKAQIWDTAGQE   73 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~--~~~-----~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~~   73 (217)
                      ...+|+++|+.++|||||+++|+...  ...     ..      ....+++....  .+.+   ++..+.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            35799999999999999999998732  110     00      01122222222  2222   4556889999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC---
Q 027894           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT---  150 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---  150 (217)
                      .|...+..+++.+|++++|+|++++.+.+....|.....    .+.|+++|+||+|+....  ......++....++   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999999999999999999999999888887877776654    578999999999997532  23334556666666   


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          151 FFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       151 ~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      .++++||+++.|++++|++|.+.+..
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCCC
Confidence            48999999999999999999887653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=8e-22  Score=148.86  Aligned_cols=165  Identities=16%  Similarity=0.155  Sum_probs=107.9

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc--ccceeEEEEEEEECCeEEEEEEEeCCCc-----------hh
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS--TIGVEFATRSIRVEDKIVKAQIWDTAGQ-----------ER   74 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------~~   74 (217)
                      ......++|+++|.+|+|||||+++|++..+.....+  +.+.......+.+.+  ..+.+|||||.           +.
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence            3455679999999999999999999999887555444  444555555566666  46899999993           34


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhH--HHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC------HHHHHHHHH
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTF--ENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS------TEDAKAFAE  146 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~  146 (217)
                      +......+++.+|++++|+|+++....  ..+..+...+...  ...|+++|+||+|+.....+.      .+.+..++.
T Consensus       102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            455555666789999999998764432  2222222222211  236899999999986543332      245777888


Q ss_pred             HcCCcEEEeccCCC-----CCHHHHHHHHHHHHHH
Q 027894          147 RENTFFMETSALES-----MNVENAFTEVLTQIYH  176 (217)
Q Consensus       147 ~~~~~~~~~Sa~~~-----~~v~~~~~~i~~~~~~  176 (217)
                      ..+..++.++...+     .++.++|..+.+.+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            88888888887754     6788888877666643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=9.2e-22  Score=164.79  Aligned_cols=160  Identities=21%  Similarity=0.255  Sum_probs=115.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc--CCC-----CCCc------ccceeE--EEEEEEE---CCeEEEEEEEeCCCc
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNE--FSL-----ESKS------TIGVEF--ATRSIRV---EDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~--~~~-----~~~~------~~~~~~--~~~~~~~---~~~~~~~~l~Dt~G~   72 (217)
                      +...+|+++|+.++|||||+++|+...  +..     ....      ..+++.  ....+.+   ++..+.+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            456899999999999999999998632  110     0000      011111  1112222   455688999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC--
Q 027894           73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT--  150 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--  150 (217)
                      ..|...+..++..+|++++|+|++++.+.+....|.....    .+.|+++|+||+|+....  ......++....++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9999888889999999999999999988888888776654    578999999999996532  22334555565666  


Q ss_pred             -cEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          151 -FFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       151 -~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                       .++++||++|.|++++|++|++.+..
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhccc
Confidence             48999999999999999999887754

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=2.3e-21  Score=157.07  Aligned_cols=160  Identities=23%  Similarity=0.191  Sum_probs=105.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCc---CCCCCCc--ccceeEEEEEEEE-------------C--C----eEEEEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE---FSLESKS--TIGVEFATRSIRV-------------E--D----KIVKAQ   65 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   65 (217)
                      ....++|+++|+.++|||||+++|.+..   +.....+  |....+....+..             +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            3456999999999999999999998543   2222223  3333333333321             1  1    136899


Q ss_pred             EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCHH
Q 027894           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VSTE  139 (217)
Q Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~  139 (217)
                      +|||||++.|.......+..+|++++|+|++++    .+.+.+.    .+...  ...|+++++||+|+.+...  ...+
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~  158 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQAEENYE  158 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHHHHHHH
Confidence            999999999988888888899999999999964    3333332    22221  2357999999999975433  2345


Q ss_pred             HHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          140 DAKAFAER---ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       140 ~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      ++.+++..   .+++++++||++++|+++++++|.+.+.
T Consensus       159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            66666654   3678999999999999999999987654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=8.4e-23  Score=166.99  Aligned_cols=153  Identities=20%  Similarity=0.231  Sum_probs=104.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhh--------Hhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAIT--------SAY   82 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   82 (217)
                      ..++|+++|.+|+|||||+|+|++..+.. ...++.+.+.....+.+++  ..+.+|||||...+....        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            45899999999999999999999976542 2334444445445566676  567999999976543322        235


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894           83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      +..+|++++|+|++++.+... ..|+..+.     ..|+++|+||+|+.......  ....+.  .+.+++++||+++.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            788999999999999776554 44555553     37999999999997644333  111111  356899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQIYH  176 (217)
Q Consensus       163 v~~~~~~i~~~~~~  176 (217)
                      ++++|++|.+.+..
T Consensus       371 i~eL~~~i~~~~~~  384 (462)
T 3geh_A          371 IDSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887753

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.88  E-value=1.2e-21  Score=155.89  Aligned_cols=163  Identities=17%  Similarity=0.124  Sum_probs=109.9

Q ss_pred             eeE-EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc---------hhhhhhhHhh
Q 027894           13 LYK-VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------ERYRAITSAY   82 (217)
Q Consensus        13 ~~~-I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~~   82 (217)
                      .++ |+++|++|+|||||+|+|.+..+.....+..+.+.....+.+++  ..+.+|||+|.         +.+...+ ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            344 99999999999999999999876443334444555566677777  46799999996         2233333 35


Q ss_pred             hcCCcEEEEEEeCCChh--hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHHHHHc---CCcEEEec
Q 027894           83 YRGAVGALLVYDVTRHV--TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAFAERE---NTFFMETS  156 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~S  156 (217)
                      +..+|++++|+|++++.  ..+.+..|...+......+.|+++|+||+|+...... ..+.+..++...   +.+++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            68899999999999877  5555655655555444367899999999998642210 011222233443   34689999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHh
Q 027894          157 ALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       157 a~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      |+++.|+++++++|.+.+....
T Consensus       335 A~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHHhcccC
Confidence            9999999999999988776543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.88  E-value=9.5e-22  Score=153.51  Aligned_cols=126  Identities=16%  Similarity=0.176  Sum_probs=102.1

Q ss_pred             EEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHhccCC-CCC
Q 027894           51 ATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRGHTD-SNI  119 (217)
Q Consensus        51 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~  119 (217)
                      ....+.+.+  +.+.+|||+|++.++..|..++++++++|+|||++          +..++.+...|+..+..... .+.
T Consensus       158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~  235 (327)
T 3ohm_A          158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS  235 (327)
T ss_dssp             EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred             EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence            344455554  78999999999999999999999999999999665          66778877777777765443 679


Q ss_pred             cEEEEEeCCCCCCcc----------------cCCHHHHHHHHH----------HcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894          120 VIMLVGNKADLRHLC----------------AVSTEDAKAFAE----------RENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       120 p~iiv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      |+++++||+|+..++                ..+.+++..++.          ..++.+++|||+++.|++++|+.+.+.
T Consensus       236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~  315 (327)
T 3ohm_A          236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  315 (327)
T ss_dssp             EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence            999999999986433                467778887743          356778999999999999999999999


Q ss_pred             HHHHh
Q 027894          174 IYHVV  178 (217)
Q Consensus       174 ~~~~~  178 (217)
                      +++..
T Consensus       316 Il~~~  320 (327)
T 3ohm_A          316 ILQLN  320 (327)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            88643

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.88  E-value=7.8e-22  Score=160.92  Aligned_cols=158  Identities=19%  Similarity=0.156  Sum_probs=105.6

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-------------------------------CCCcccceeEEEEEEEE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-------------------------------ESKSTIGVEFATRSIRV   57 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   57 (217)
                      .....++|+++|++++|||||+++|+...-..                               ......+.+.....+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            34567999999999999999999996542111                               11123344444444444


Q ss_pred             CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh---HHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCc
Q 027894           58 EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---FENVERWLKELRGHTDSNIV-IMLVGNKADLRHL  133 (217)
Q Consensus        58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~  133 (217)
                      .+  ..+.+|||||++.|...+..++..+|++++|+|+++...   |+....+...+......+.| +++|+||+|+...
T Consensus        93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV  170 (439)
T ss_pred             CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence            43  589999999999999999999999999999999998642   11001111111111113566 8999999998531


Q ss_pred             c------cCCHHHHHHHHHHcC------CcEEEeccCCCCCHHHHHH
Q 027894          134 C------AVSTEDAKAFAEREN------TFFMETSALESMNVENAFT  168 (217)
Q Consensus       134 ~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~  168 (217)
                      .      +...++...++...+      ++++++||++|.|+.++++
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            1      112234445555544      5799999999999999766

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.87  E-value=7.3e-22  Score=156.18  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=95.1

Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCC
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRGHTD-SNIVIMLVGNKA  128 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~  128 (217)
                      ..+.+.+|||+|++.++..|..++++++++|+|||++          +..+++....|+..+..... .+.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          78899999888888876532 679999999999


Q ss_pred             CCCCccc--C-------------------CHHHHHHHHHH----------------cCCcEEEeccCCCCCHHHHHHHHH
Q 027894          129 DLRHLCA--V-------------------STEDAKAFAER----------------ENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus       129 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |+..++.  +                   ..+++..++..                ..+.+++|||++++|++++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9853221  1                   14566666432                124468999999999999999999


Q ss_pred             HHHHHHh
Q 027894          172 TQIYHVV  178 (217)
Q Consensus       172 ~~~~~~~  178 (217)
                      +.+.+..
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=1.2e-21  Score=158.79  Aligned_cols=161  Identities=24%  Similarity=0.211  Sum_probs=111.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCc---CCCCCCc--ccceeEEEEEEEE-------------C--C----eEEEE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNE---FSLESKS--TIGVEFATRSIRV-------------E--D----KIVKA   64 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   64 (217)
                      .....++|+++|+.++|||||+++|++..   +.....+  |....+....+..             .  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            45678999999999999999999998543   2222223  3333333333211             0  1    13689


Q ss_pred             EEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCH
Q 027894           65 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VST  138 (217)
Q Consensus        65 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~  138 (217)
                      .+|||||++.|.......+..+|++++|+|+++.    .+.+.+..    +...  ...|+++|+||+|+.+...  ...
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHH
Confidence            9999999999988888888899999999999964    33333322    2221  2357999999999865322  123


Q ss_pred             HHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          139 EDAKAFAER---ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       139 ~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      +++.+++..   .+++++++||+++.|+++++++|.+.+.
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            344555543   4678999999999999999999887654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.87  E-value=1.6e-22  Score=155.65  Aligned_cols=161  Identities=16%  Similarity=0.200  Sum_probs=94.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------CcccceeEEEEEEEECCeEEEEEEEeCCCch-------h
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES--------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-------R   74 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~   74 (217)
                      ....++|+++|.+|+|||||+|+|++.......        .++.+.+.....+..++..+.+.+|||||..       .
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            346799999999999999999998876544332        3555555555555555555789999999962       2


Q ss_pred             hhhhh-------Hhhhc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894           75 YRAIT-------SAYYR-------------GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        75 ~~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                      +..+.       ..++.             .+|+++++++.+.......-..++..+..    ++|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            33322       33333             37899999987663322222344555543    79999999999985422


Q ss_pred             cCC--HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          135 AVS--TEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       135 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      +..  ...+.+.+...+++++++|+.+++|+.+++++|.+.+
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            221  1334455566789999999999999999998887643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=1.6e-22  Score=165.09  Aligned_cols=152  Identities=19%  Similarity=0.155  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch--------hhhhhhHhhhcC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE--------RYRAITSAYYRG   85 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~~   85 (217)
                      ++|+++|.+|||||||+|+|++..+... ..+.+.+..............+.+|||||++        .+...+..+++.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            6899999999999999999999876432 2333443333333333334578999999975        566777888999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHH
Q 027894           86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVE  164 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  164 (217)
                      +|++++|+|+.++.+..+. .+...+..   .+.|+++|+||+|+.....    +..++. ..++ +++++||++|.|+.
T Consensus        83 ad~il~vvD~~~~~~~~d~-~~~~~l~~---~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~  153 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAADE-EVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG  153 (436)
T ss_dssp             CSEEEEEEETTTCSCHHHH-HHHHHHTT---CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence            9999999999987665442 22233332   5789999999999864321    111222 3454 68999999999999


Q ss_pred             HHHHHHHHHHH
Q 027894          165 NAFTEVLTQIY  175 (217)
Q Consensus       165 ~~~~~i~~~~~  175 (217)
                      ++++++.+.+.
T Consensus       154 ~L~~~i~~~l~  164 (436)
T 2hjg_A          154 DLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHTGG
T ss_pred             HHHHHHHHhcC
Confidence            99999988764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.87  E-value=1.7e-21  Score=154.59  Aligned_cols=125  Identities=18%  Similarity=0.220  Sum_probs=95.5

Q ss_pred             EEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHhccC-CCCCcE
Q 027894           53 RSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRGHT-DSNIVI  121 (217)
Q Consensus        53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~  121 (217)
                      ..+.+.+  +.+.+|||+|++.++..|..++++++++|||+|+++          ..++.+...|+..+.... ..+.|+
T Consensus       194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI  271 (362)
T ss_dssp             EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence            3444554  789999999999999999999999999999999999          778998888888887653 267999


Q ss_pred             EEEEeCCCCCCcc----------------cCCHHHHHHHHH-----------HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          122 MLVGNKADLRHLC----------------AVSTEDAKAFAE-----------RENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       122 iiv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      |+++||+|+..++                .++.+++..++.           ..++.+++|||++++|++++|+++.+.+
T Consensus       272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  351 (362)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence            9999999985322                256777777662           3457899999999999999999999988


Q ss_pred             HHHhh
Q 027894          175 YHVVS  179 (217)
Q Consensus       175 ~~~~~  179 (217)
                      .+..-
T Consensus       352 ~~~~l  356 (362)
T 1zcb_A          352 LHDNL  356 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=1.5e-21  Score=149.09  Aligned_cols=163  Identities=15%  Similarity=0.122  Sum_probs=106.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCcc-cceeEEEEEEEECCeEEEEEEEeCCCchhhh-----------
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEF-SLESKST-IGVEFATRSIRVEDKIVKAQIWDTAGQERYR-----------   76 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------   76 (217)
                      ....++|+|+|.+|+|||||+++|++... .....++ .+.......+...+  ..+.+|||||...+.           
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            34579999999999999999999998873 3333333 34444444555555  568999999975432           


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhH-HHHHHHHHHHhccCCCCCcEEEEEe-CCCCCCcccCCH-------HHHHHHHHH
Q 027894           77 AITSAYYRGAVGALLVYDVTRHVTF-ENVERWLKELRGHTDSNIVIMLVGN-KADLRHLCAVST-------EDAKAFAER  147 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~iiv~n-K~D~~~~~~~~~-------~~~~~~~~~  147 (217)
                      .....+++.+|++++|+|+++.... ..+..++..+.... ...|.++++| |+|+... ....       .++..++..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence            2223467899999999999863222 12223333332211 1456666666 9999642 1111       224445555


Q ss_pred             cCCc---E--EEeccCCCCCHHHHHHHHHHHHHH
Q 027894          148 ENTF---F--METSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       148 ~~~~---~--~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      .+..   +  +++||+++.|++++|++|.+.+..
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            5533   2  789999999999999999998765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=7e-21  Score=155.57  Aligned_cols=162  Identities=20%  Similarity=0.177  Sum_probs=109.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI-----------   78 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   78 (217)
                      +..++|+++|++|||||||+|+|++..... ...++.+.+.....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            356999999999999999999999986522 22233334444445666774  5789999997433221           


Q ss_pred             -hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHH-HH----HcCCcE
Q 027894           79 -TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAF-AE----RENTFF  152 (217)
Q Consensus        79 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~----~~~~~~  152 (217)
                       ...+++.+|++++++|++++.+.++. .+...+..   .+.|+++|+||+|+.+......++.... ..    ..++++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             13456789999999999987666543 23333332   5689999999999976444444333322 22    235789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          153 METSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       153 ~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      +++||++|.|++++|+.+.+.+....
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            99999999999999999998776543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.86  E-value=1.9e-21  Score=151.36  Aligned_cols=155  Identities=22%  Similarity=0.200  Sum_probs=105.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCch-h--------hhhhhHh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-R--------YRAITSA   81 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~--------~~~~~~~   81 (217)
                      ...+|+++|++|+|||||+++|++..+.... .+..+.......+...+  ..+.+|||||.. .        +......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            3458999999999999999999998764322 12122222222233343  578999999986 2        2233455


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHH-HHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894           82 YYRGAVGALLVYDVTRHVTFENVERWL-KELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALE  159 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      +++.+|++++|+|+++ -+  ....++ ..+.   ..+.|+++++||+|+........+...++....++ .++++||++
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            6788999999999977 22  222233 3332   24689999999999865222223444555555666 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQI  174 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~  174 (217)
                      +.|++++++.+.+.+
T Consensus       159 g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          159 GLNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTTHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999988654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.86  E-value=8.8e-23  Score=162.58  Aligned_cols=164  Identities=18%  Similarity=0.261  Sum_probs=92.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCC--------cccceeEEEEEEEECCeEEEEEEEeCCCc-------hh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESK--------STIGVEFATRSIRVEDKIVKAQIWDTAGQ-------ER   74 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~   74 (217)
                      ...++|+|+|++|+|||||+++|.+..... ...        ++.+.......+...+..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            456899999999999999999987654322 211        33333433334444566678999999998       55


Q ss_pred             hhhhhH-------hhhcCC-------------cEEEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894           75 YRAITS-------AYYRGA-------------VGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        75 ~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~  133 (217)
                      +..++.       .+++.+             |+++|+++.. ..++..+. .++..+    ..++|+|+|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            655554       444433             3455555431 34444443 344443    267999999999999764


Q ss_pred             ccCCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894          134 CAVST--EDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       134 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      .++..  +++..++...+++++++||+++.+ ++.|.++.+.+.+..+.
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence            44433  456667777889999999999999 89999999888765543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=2e-21  Score=160.52  Aligned_cols=150  Identities=16%  Similarity=0.130  Sum_probs=97.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCC-------------------------------CCCcccceeEEEEEEEECCe
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-------------------------------ESKSTIGVEFATRSIRVEDK   60 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   60 (217)
                      ..+||+++|++++|||||+++|+......                               ......+.+.....  +...
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~~~~  109 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH--FSTH  109 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE--EECS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE--EecC
Confidence            46999999999999999999997652110                               01112222222222  3333


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHH------HHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN------VERWLKELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                      ...+.+|||||++.|...+..++..+|++++|+|++++.++..      ....+..+.. . ...|+++|+||+|+.+..
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~-~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L-GIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-T-TCCCEEEEEECGGGGTTC
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-c-CCCcEEEEEECcCcccch
Confidence            4679999999999999999999999999999999998754322      1122222221 1 235699999999997533


Q ss_pred             cCCHH----HHHHHHHHc-----CCcEEEeccCCCCCHHH
Q 027894          135 AVSTE----DAKAFAERE-----NTFFMETSALESMNVEN  165 (217)
Q Consensus       135 ~~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~v~~  165 (217)
                      +...+    +...+....     +++++++||++|+|+++
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            22222    233333333     45799999999999985

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=3.1e-21  Score=157.44  Aligned_cols=158  Identities=23%  Similarity=0.204  Sum_probs=106.7

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC---C---------CCcc---------------------cceeEEEE
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---E---------SKST---------------------IGVEFATR   53 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~---------~~~~---------------------~~~~~~~~   53 (217)
                      +......++|+++|++++|||||+++|++.....   .         ...+                     .+.+....
T Consensus        18 ~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~   97 (434)
T 1zun_B           18 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   97 (434)
T ss_dssp             STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             hcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee
Confidence            3344567999999999999999999998754110   0         0011                     11122222


Q ss_pred             EEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894           54 SIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        54 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  133 (217)
                      .+  ......+.+|||||++.|...+..++..+|++++|+|++++...+. ..++..+...  ...|+++|+||+|+.+.
T Consensus        98 ~~--~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~--~~~~iIvviNK~Dl~~~  172 (434)
T 1zun_B           98 YF--STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL--GIKHIVVAINKMDLNGF  172 (434)
T ss_dssp             EE--ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEEECTTTTTS
T ss_pred             Ee--ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEEcCcCCcc
Confidence            22  2233678999999999998888889999999999999998654333 2333333322  12368999999999652


Q ss_pred             cc----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHHH
Q 027894          134 CA----VSTEDAKAFAEREN-----TFFMETSALESMNVENAFTE  169 (217)
Q Consensus       134 ~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      .+    ...++...++...+     ++++++||++|.|++++|+.
T Consensus       173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence            11    12344566666677     67999999999999986443

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.86  E-value=1.2e-23  Score=174.15  Aligned_cols=159  Identities=18%  Similarity=0.186  Sum_probs=114.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|++++|||||+++|.+..+.....++.+.++....+.... ...+.+|||||++.|...+..++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            357899999999999999999998776555555554444443333321 2368999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHH---HHHc--CCcEEEeccCCCCCHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAF---AERE--NTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~  165 (217)
                      |+|+++....+..+.| ..+.   ..+.|+++++||+|+.+.... ...+...+   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            9999997665555443 2232   256899999999999642211 11112211   1112  35799999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          166 AFTEVLTQIY  175 (217)
Q Consensus       166 ~~~~i~~~~~  175 (217)
                      +|++|...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999987664

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=2.7e-21  Score=156.11  Aligned_cols=159  Identities=18%  Similarity=0.132  Sum_probs=109.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc-------CCCC-------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNE-------FSLE-------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      .++|+++|++++|||||+++|++..       +...       .....+.+.......+......+.+|||||++.|...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            5899999999999999999998741       1100       0011223333333334334467899999999999888


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCccc---CCHHHHHHHHHHcC-----
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCA---VSTEDAKAFAEREN-----  149 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~-----  149 (217)
                      ...++..+|++++|+|+++....+..+.| ..+..   .++| +++++||+|+.+...   ...++..+++...+     
T Consensus        83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            88899999999999999986554444433 33332   3577 689999999864211   12245566776665     


Q ss_pred             CcEEEeccCCCCC----------HHHHHHHHHHHHH
Q 027894          150 TFFMETSALESMN----------VENAFTEVLTQIY  175 (217)
Q Consensus       150 ~~~~~~Sa~~~~~----------v~~~~~~i~~~~~  175 (217)
                      ++++++||+++.|          +.++++.|.+.+.
T Consensus       159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            5899999999764          7777777766543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=4.4e-21  Score=159.24  Aligned_cols=115  Identities=20%  Similarity=0.186  Sum_probs=83.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCC----------------------CCCcccceeEEEEEEEECCeEEEEEEEeC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL----------------------ESKSTIGVEFATRSIRVEDKIVKAQIWDT   69 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   69 (217)
                      ...+|+++|++|+|||||+++|+...-..                      ......+.......+.+.+  ..+.+|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            46899999999999999999996211000                      0001112222233344444  67999999


Q ss_pred             CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      ||+..+...+..+++.+|++++|+|++++.+.+....|.. +..   .++|+++|+||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT---TTCCEEEEEECTTSCC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH---cCCCEEEEEeCCCCcc
Confidence            9999999999999999999999999999877776655533 332   5689999999999853

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.85  E-value=2.8e-21  Score=154.19  Aligned_cols=147  Identities=10%  Similarity=0.051  Sum_probs=106.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      +|+++|++++|||||+++|+.        ...+.+.....  +......+.+|||||++.|.......++.+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            999999999999999999981        11222222222  33333569999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccCCCCCcE-EEEEe-CCCCCCcccCCH--HHHHHHHHHc---CCcEEE--eccCC---CCC
Q 027894           95 VTRHVTFENVERWLKELRGHTDSNIVI-MLVGN-KADLRHLCAVST--EDAKAFAERE---NTFFME--TSALE---SMN  162 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~~  162 (217)
                       ++. .+.....++..+..   .+.|. ++++| |+|+ +......  +++.+++...   .+++++  +||++   ++|
T Consensus        93 -~~g-~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQG-LDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TTC-CCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CCC-CcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             543 34444555554443   34676 88899 9998 4322221  4455555544   368999  99999   999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027894          163 VENAFTEVLTQIYHV  177 (217)
Q Consensus       163 v~~~~~~i~~~~~~~  177 (217)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999988765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.5e-21  Score=141.28  Aligned_cols=116  Identities=18%  Similarity=0.275  Sum_probs=87.2

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC-
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE---SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG-   85 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-   85 (217)
                      ....++|+++|.+|||||||+++|.+..+...   ..++.+.         +.....+.+|||||++.+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            35678999999999999999999999876441   1122211         1133568999999998887777777765 


Q ss_pred             ---CcEEEEEEeCC-ChhhHHHHHHHHHHHhcc----CCCCCcEEEEEeCCCCCCcc
Q 027894           86 ---AVGALLVYDVT-RHVTFENVERWLKELRGH----TDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        86 ---~d~ii~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~iiv~nK~D~~~~~  134 (217)
                         +|++++|+|++ +..++..+..|+..+...    ...+.|+++|+||+|+.+..
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence               89999999999 899999888887766543    23579999999999997543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=2.2e-21  Score=157.04  Aligned_cols=149  Identities=17%  Similarity=0.130  Sum_probs=102.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC--------cCCCC--C-----CcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRN--------EFSLE--S-----KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER   74 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      ....++|+++|++++|||||+++|++.        .+...  .     ....+.+.......+......+.+|||||++.
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            345799999999999999999999873        11110  0     00122222223333433346789999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCccc---CCHHHHHHHHHHcC-
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCA---VSTEDAKAFAEREN-  149 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~-  149 (217)
                      |...+..++..+|++++|+|++++...+. ..++..+..   .+.| +++++||+|+.....   ...++..+++...+ 
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  163 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  163 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence            98888889999999999999998764333 344444443   3577 889999999864211   11234556666655 


Q ss_pred             ----CcEEEeccCCCCC
Q 027894          150 ----TFFMETSALESMN  162 (217)
Q Consensus       150 ----~~~~~~Sa~~~~~  162 (217)
                          ++++++||+++.|
T Consensus       164 ~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          164 PGDEVPVIRGSALLALE  180 (405)
T ss_dssp             CTTTSCEEECCHHHHHH
T ss_pred             cccCCCEEEccHHHhhh
Confidence                6899999999987

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.84  E-value=4.7e-21  Score=150.09  Aligned_cols=116  Identities=16%  Similarity=0.188  Sum_probs=95.5

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCC
Q 027894           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRGHTD-SNIVIMLVGNKAD  129 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D  129 (217)
                      .+.+.+|||+|++.++..|..++++++++|+|||++          +..++.+...|+..+..... .+.|+++++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            378999999999999999999999999999999998          67888888888877765543 6899999999999


Q ss_pred             CCCcc---------------cCCHHHHHHHHHH---------------------------cCCcEEEeccCCCCCHHHHH
Q 027894          130 LRHLC---------------AVSTEDAKAFAER---------------------------ENTFFMETSALESMNVENAF  167 (217)
Q Consensus       130 ~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +..++               ....+++.+++..                           ..+.+++|||++..+++.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            84311               1245555554432                           23678999999999999999


Q ss_pred             HHHHHHHHH
Q 027894          168 TEVLTQIYH  176 (217)
Q Consensus       168 ~~i~~~~~~  176 (217)
                      ..+.+.+++
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999988

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.84  E-value=1.7e-20  Score=157.49  Aligned_cols=159  Identities=18%  Similarity=0.195  Sum_probs=107.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC----cccceeEEEEEE------------EECCeEEEEEEEeCCCchhhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESK----STIGVEFATRSI------------RVEDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~l~Dt~G~~~~~   76 (217)
                      .++|+++|++++|||||+++|.+..+.....    .+.+..+.....            ........+.+|||||++.|.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~   84 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence            4789999999999999999998875533221    122222111100            000011258999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC-------------H--
Q 027894           77 AITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS-------------T--  138 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-------------~--  138 (217)
                      ..+..+++.+|++++|+|+++   +.+++.+..    +..   .+.|+++++||+|+.......             .  
T Consensus        85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v  157 (594)
T 1g7s_A           85 TLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (594)
T ss_dssp             TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence            888888999999999999999   555544432    222   568999999999996421110             0  


Q ss_pred             -H-------HHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          139 -E-------DAKAFAEREN---------------TFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       139 -~-------~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                       +       +........+               ++++++||++|.|+++++++|...+....
T Consensus       158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence             0       1111122222               37999999999999999999998876544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=2.7e-21  Score=158.69  Aligned_cols=156  Identities=17%  Similarity=0.114  Sum_probs=102.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC--------chhhhhhhHh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG--------QERYRAITSA   81 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~   81 (217)
                      .....+|+++|.+|||||||+|+|++..+.... .+.+.+..............+.+|||||        ++.+...+..
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            344689999999999999999999998764322 3344444444444554456799999999        7778888888


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCC
Q 027894           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALES  160 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  160 (217)
                      +++.+|++++|+|..+..+..  ..++..+..  ..+.|+++|+||+|+....    ....++.. .++ .++++||+++
T Consensus        99 ~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~--~~~~pvilV~NK~D~~~~~----~~~~e~~~-lg~~~~~~iSA~~g  169 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGVTAA--DEEVAKILY--RTKKPVVLAVNKLDNTEMR----ANIYDFYS-LGFGEPYPISGTHG  169 (456)
T ss_dssp             HHHHCSEEEEEEESSSCSCHH--HHHHHHHHT--TCCSCEEEEEECC-------------CCSGG-GSSSSEEECCTTTC
T ss_pred             hHhhCCEEEEEEeCCCCCChH--HHHHHHHHH--HcCCCEEEEEECccchhhh----hhHHHHHH-cCCCceEEeecccc
Confidence            999999999999987754332  233333322  2579999999999985421    11112221 232 4679999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027894          161 MNVENAFTEVLTQIY  175 (217)
Q Consensus       161 ~~v~~~~~~i~~~~~  175 (217)
                      .|+.++++.+.+.+.
T Consensus       170 ~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFK  184 (456)
T ss_dssp             TTHHHHHHHHHTTGG
T ss_pred             cchHHHHHHHHhhcc
Confidence            999999999987653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.84  E-value=6.5e-22  Score=161.39  Aligned_cols=152  Identities=16%  Similarity=0.156  Sum_probs=103.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCCC-----------------------------CcccceeEEEEEEEECC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRN--EFSLES-----------------------------KSTIGVEFATRSIRVED   59 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   59 (217)
                      ...++|+++|+.++|||||+++|+..  .+....                             ....+.+.....+  ..
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ET   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--EC
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ec
Confidence            35689999999999999999999875  221110                             1122222222233  33


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHH-------HHHHhccCCCC-CcEEEEEeCCCCC
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW-------LKELRGHTDSN-IVIMLVGNKADLR  131 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-------~~~l~~~~~~~-~p~iiv~nK~D~~  131 (217)
                      ....+.+|||||++.|...+..++..+|++++|+|+++ .+|+....|       +..+..   .+ .|+++++||+|+.
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK~Dl~  157 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLT  157 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGS
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEcccCC
Confidence            34679999999999999999999999999999999998 666643322       222221   23 4689999999996


Q ss_pred             Ccc------cCCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 027894          132 HLC------AVSTEDAKAFAEREN-----TFFMETSALESMNVENAFT  168 (217)
Q Consensus       132 ~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~  168 (217)
                      +..      ....+++..++...+     ++++++||++|+|+.++++
T Consensus       158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            521      112355666776665     6799999999999986654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.84  E-value=6.1e-20  Score=146.85  Aligned_cols=127  Identities=18%  Similarity=0.228  Sum_probs=101.6

Q ss_pred             EEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHhccC-CCCCcE
Q 027894           53 RSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRGHT-DSNIVI  121 (217)
Q Consensus        53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~  121 (217)
                      ..+.+.+  +.+.+|||+|++.++..|..++++++++|+|||+++          ..+++.+..|+..+.... ..+.|+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            3444554  789999999999999999999999999999999999          889999999999887753 368999


Q ss_pred             EEEEeCCCCCCccc---C---------------------------CHHHHHHHH-----HH--------cCCcEEEeccC
Q 027894          122 MLVGNKADLRHLCA---V---------------------------STEDAKAFA-----ER--------ENTFFMETSAL  158 (217)
Q Consensus       122 iiv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~  158 (217)
                      +||+||+|+..++.   +                           ..+++..++     ..        ..+.+++|||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999854321   1                           134555553     21        24668899999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhcc
Q 027894          159 ESMNVENAFTEVLTQIYHVVSRK  181 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~~~~~~~~~  181 (217)
                      ++.||+++|.++.+.+.....+.
T Consensus       368 d~~nV~~vF~~v~~~I~~~~l~~  390 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRMHLRQ  390 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887765544

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.83  E-value=1.8e-21  Score=159.95  Aligned_cols=155  Identities=21%  Similarity=0.178  Sum_probs=91.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc--CCC-----------------------------CCCcccceeEEEEEEEECC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNE--FSL-----------------------------ESKSTIGVEFATRSIRVED   59 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~   59 (217)
                      ...++|+++|+.++|||||+++|+...  +..                             ......+++.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            467999999999999999999997521  110                             0001112222222333333


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcc-
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLC-  134 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~-  134 (217)
                        ..+.+|||||++.|...+...+..+|++|+|+|+++..   +|+....+...+......++| +++++||+|+.... 
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              67899999999999988888899999999999999863   332211222222211124576 99999999995321 


Q ss_pred             -----cCCHHHHHHHHHHc-------CCcEEEeccCCCCCHHHHH
Q 027894          135 -----AVSTEDAKAFAERE-------NTFFMETSALESMNVENAF  167 (217)
Q Consensus       135 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~  167 (217)
                           ....++...++...       +++++++||++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11223456666655       4569999999999998866

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.83  E-value=6.8e-21  Score=160.74  Aligned_cols=153  Identities=14%  Similarity=0.119  Sum_probs=101.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-------------------------------CcccceeEEEEEEEECC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-------------------------------KSTIGVEFATRSIRVED   59 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   59 (217)
                      ...++|+++|++|+|||||+++|++.......                               ....+.+.....+... 
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~-  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence            34789999999999999999999876332111                               0122222223333333 


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TF---ENVERWLKELRGHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  133 (217)
                       ...+.+|||||++.|...+..++..+|++|+|+|++++.   ++   ......+..+.. . ...|+|+|+||+|+.+.
T Consensus       244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-l-gi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L-GIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-T-TCCEEEEEEECTTTTTT
T ss_pred             -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-c-CCCeEEEEEecccccch
Confidence             367899999999999999999999999999999998752   11   011111122221 1 22459999999998652


Q ss_pred             ccCC----HHHHHHHHHHcC-----CcEEEeccCCCCCHHHHH
Q 027894          134 CAVS----TEDAKAFAEREN-----TFFMETSALESMNVENAF  167 (217)
Q Consensus       134 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~  167 (217)
                      .+..    .++...++...+     ++++++||++|.|+.++.
T Consensus       321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            2222    233344444443     589999999999998763

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.83  E-value=2.9e-22  Score=164.60  Aligned_cols=155  Identities=16%  Similarity=0.213  Sum_probs=105.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|++++|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||++.|...+...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            357899999999999999999988665443333333322222233333  468999999999999888888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc--cCCHH--HHHHHHHHc--CCcEEEeccCCCCCHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC--AVSTE--DAKAFAERE--NTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~Sa~~~~~v~~  165 (217)
                      |+|++++...+..+.| ..+..   .+.|+++++||+|+....  .+..+  +...++..+  .++++++||++|.|+++
T Consensus        81 VVda~~g~~~qT~e~l-~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e  156 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI-QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE  156 (501)
T ss_dssp             EEETTTBSCTTTHHHH-HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred             EeecccCccHHHHHHH-HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence            9999884322222222 22222   568999999999996421  11100  000011222  26899999999999999


Q ss_pred             HHHHHHH
Q 027894          166 AFTEVLT  172 (217)
Q Consensus       166 ~~~~i~~  172 (217)
                      +|++|..
T Consensus       157 Lle~I~~  163 (501)
T 1zo1_I          157 LLDAILL  163 (501)
T ss_dssp             HHHHTTT
T ss_pred             hhhhhhh
Confidence            9999864

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=1.3e-20  Score=146.59  Aligned_cols=164  Identities=12%  Similarity=0.093  Sum_probs=105.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------Ccc----------------------ccee------------
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES------KST----------------------IGVE------------   49 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~------~~~----------------------~~~~------------   49 (217)
                      ....++|+|+|.+|+|||||+++|++..+.+..      .++                      .+.+            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            345689999999999999999999998874321      111                      0000            


Q ss_pred             -----------EEEEEEEECCeEEEEEEEeCCCch-------------hhhhhhHhhhcCCcEEE-EEEeCCChhhHHHH
Q 027894           50 -----------FATRSIRVEDKIVKAQIWDTAGQE-------------RYRAITSAYYRGAVGAL-LVYDVTRHVTFENV  104 (217)
Q Consensus        50 -----------~~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~  104 (217)
                                 .....+... ....+.+|||||..             .+......+++.++.++ +|+|+++..+..+.
T Consensus       103 i~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~  181 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  181 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred             hcccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence                       000001011 12568999999953             45566777888888766 79999876544443


Q ss_pred             HHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH--cC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894          105 ERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER--EN-TFFMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       105 ~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                      ..++..+..   .+.|+++|+||+|+.+......+........  .+ .+++++||+++.|++++|+++.+.....
T Consensus       182 ~~~~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~  254 (299)
T 2aka_B          182 LKIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF  254 (299)
T ss_dssp             HHHHHHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHhCC---CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence            345554432   5689999999999975433233222210001  12 3688999999999999999998754433

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=3.8e-20  Score=162.55  Aligned_cols=162  Identities=17%  Similarity=0.106  Sum_probs=108.5

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCc-------CCC-------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNE-------FSL-------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER   74 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      .....++|+++|++++|||||+++|++..       +..       ....+.+++.....+.+......+.+|||||++.
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            34567999999999999999999998741       000       0011223332222333444446789999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCccc---CCHHHHHHHHHHcC-
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCA---VSTEDAKAFAEREN-  149 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~-  149 (217)
                      |......++..+|++|+|+|++++...+.. .++..+..   .++| +|+++||+|+.+...   ...++...++...+ 
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~QTr-EhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTTHH-HHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHHHH-HHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            998888899999999999999986543332 33333332   3577 789999999964221   12245566666665 


Q ss_pred             ----CcEEEeccCCC--------CCHHHHHHHHHHHH
Q 027894          150 ----TFFMETSALES--------MNVENAFTEVLTQI  174 (217)
Q Consensus       150 ----~~~~~~Sa~~~--------~~v~~~~~~i~~~~  174 (217)
                          ++++++||+++        .|+.++++.|.+.+
T Consensus       448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             cccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence                68999999999        45777777766544

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.82  E-value=2e-19  Score=132.87  Aligned_cols=157  Identities=20%  Similarity=0.210  Sum_probs=99.6

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch----------hhhhhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE----------RYRAIT   79 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~   79 (217)
                      .....+|+++|++|||||||+++|.+..+.....++.+.......+.+.+   .+.+|||||..          .+....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34568999999999999999999998764333334444433333333333   46899999963          233333


Q ss_pred             Hhhh---cCCcEEEEEEeCCChhhHHH--HHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCHHHHHHHHHHcC--C
Q 027894           80 SAYY---RGAVGALLVYDVTRHVTFEN--VERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VSTEDAKAFAEREN--T  150 (217)
Q Consensus        80 ~~~~---~~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~--~  150 (217)
                      ..++   ..++++++++|++++.+...  +..|+   ..   .+.|+++++||+|+....+  ...+.+..++...+  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            3444   57899999999998765432  22232   21   4688999999999754211  11234444554443  5


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          151 FFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       151 ~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      .++++|++++.|+++++++|.+.+.
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHHh
Confidence            6899999999999999999887654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.81  E-value=9.6e-20  Score=149.36  Aligned_cols=150  Identities=15%  Similarity=0.117  Sum_probs=101.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc--CCCC-----------------------------CCcccceeEEEEEEEECC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNE--FSLE-----------------------------SKSTIGVEFATRSIRVED   59 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~   59 (217)
                      ...++|+++|++++|||||+++|++..  +...                             .....+.+.....+..  
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~--   82 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--   82 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--
Confidence            356999999999999999999998741  1110                             0011222222223333  


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hH----HHHHHHHHHHhccCCCCCc-EEEEEeCCCCC
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TF----ENVERWLKELRGHTDSNIV-IMLVGNKADLR  131 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~----~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~  131 (217)
                      ....+.+|||||++.|...+..++..+|++++|+|+++..   +|    +..+.+ ..+..   .+.| +++|+||+|+.
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~---~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT---LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH---TTCCEEEEEEECGGGG
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH---cCCCeEEEEEEccccc
Confidence            3367999999999999999999999999999999998763   22    222222 22222   3455 89999999996


Q ss_pred             Cccc----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHH
Q 027894          132 HLCA----VSTEDAKAFAEREN-----TFFMETSALESMNVENA  166 (217)
Q Consensus       132 ~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~  166 (217)
                      +..+    ...++...++...+     ++++++||+++.|+.++
T Consensus       159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            3111    12234555666555     68999999999998754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.80  E-value=6.9e-19  Score=150.14  Aligned_cols=116  Identities=17%  Similarity=0.148  Sum_probs=82.9

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC------------------cccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK------------------STIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .....+|+++|+.|+|||||+++|++........                  ...++......+...  .+.+.+|||||
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG   83 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG   83 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence            3456899999999999999999998543221100                  112222333333333  37789999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      +..+...+..+++.+|++++|+|+++....... .++..+..   .+.|+++|+||+|+.
T Consensus        84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             ccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh
Confidence            999988889999999999999999876554433 33344433   468999999999985

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.80  E-value=1e-18  Score=133.57  Aligned_cols=124  Identities=16%  Similarity=0.121  Sum_probs=84.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhh------
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYY------   83 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~------   83 (217)
                      ...++|+++|.+|+|||||+++|++...... ..+..+.......+..++  ..+.+|||||+..+......++      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            3579999999999999999999999875332 223333444445555665  4789999999866544333333      


Q ss_pred             ---cCCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCC--CCcEEEEEeCCCCCCcccCC
Q 027894           84 ---RGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDS--NIVIMLVGNKADLRHLCAVS  137 (217)
Q Consensus        84 ---~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~--~~p~iiv~nK~D~~~~~~~~  137 (217)
                         ..+|++++|++++... +... ..|+..+......  ..|+++|+||+|+...+...
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  170 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS  170 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence               2789999999987654 3322 3566666554332  24899999999996444443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.79  E-value=1.4e-18  Score=148.86  Aligned_cols=165  Identities=13%  Similarity=0.214  Sum_probs=110.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-Ccccce------------eE----------------------------
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGV------------EF----------------------------   50 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~------------~~----------------------------   50 (217)
                      ..++|+|+|.+|+|||||+|+|++..+.+.. .+++..            +.                            
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            4689999999999999999999998765432 222210            00                            


Q ss_pred             -------------EEEEEEECCeE--EEEEEEeCCCchh---hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHh
Q 027894           51 -------------ATRSIRVEDKI--VKAQIWDTAGQER---YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR  112 (217)
Q Consensus        51 -------------~~~~~~~~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~  112 (217)
                                   ....+.++...  ..+.+|||||...   ....+..+++.+|++++|+|++++.+..+...|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                         00001111100  2489999999654   34556678899999999999999888777766655543


Q ss_pred             ccCCCCCcEEEEEeCCCCCCcccCCHH----------HHHH-----HHHH--------cCCcEEEeccC-----------
Q 027894          113 GHTDSNIVIMLVGNKADLRHLCAVSTE----------DAKA-----FAER--------ENTFFMETSAL-----------  158 (217)
Q Consensus       113 ~~~~~~~p~iiv~nK~D~~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~-----------  158 (217)
                      .   .+.|+++|+||+|+......+.+          ....     +...        ...+++++||+           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   35789999999998643311111          1111     1111        12469999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHhh
Q 027894          159 ---ESMNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       159 ---~~~~v~~~~~~i~~~~~~~~~  179 (217)
                         ++.|++++++.+.+.+...+.
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~~~~  328 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTRERA  328 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred             hhhhccCHHHHHHHHHHHHHHhHH
Confidence               999999999999988765543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.79  E-value=8.6e-19  Score=141.27  Aligned_cols=161  Identities=17%  Similarity=0.128  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhhhHh---hhcCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAITSA---YYRGA   86 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~   86 (217)
                      ..|+++|++|||||||++.|++........+..+.......+..++ ...+.+||+||...    +..+...   .+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999998753222222222333333444443 24579999999632    1112122   24579


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      +.+++++|++ ..++.++..+...+.....  ...|.++|+||+|+...  ...++....+...+++++.+||++++|++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999998 5667777766666554321  35788999999998653  22334445555567899999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027894          165 NAFTEVLTQIYHVV  178 (217)
Q Consensus       165 ~~~~~i~~~~~~~~  178 (217)
                      +++++|.+.+.+..
T Consensus       314 eL~~~i~~~l~~~~  327 (416)
T 1udx_A          314 ALKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.79  E-value=2.5e-18  Score=147.22  Aligned_cols=120  Identities=18%  Similarity=0.223  Sum_probs=86.3

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC------------------CCcccceeEEEEEEEECCeEEEEEEEe
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE------------------SKSTIGVEFATRSIRVEDKIVKAQIWD   68 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D   68 (217)
                      ........+|+++|++|+|||||+++|+.......                  .....++......+.+.+  ..+.+||
T Consensus         6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liD   83 (691)
T 1dar_A            6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIID   83 (691)
T ss_dssp             CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEEC
T ss_pred             cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEE
Confidence            34456789999999999999999999984211000                  011112222222333443  6789999


Q ss_pred             CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      |||+..|...+..+++.+|++++|+|+++..+.+....|.....    .+.|+++|+||+|+..
T Consensus        84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~----~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK----YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----TTCCEEEEEECTTSTT
T ss_pred             CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH----cCCCEEEEEECCCccc
Confidence            99999998889999999999999999999888777766654332    4789999999999853

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.78  E-value=2.1e-19  Score=143.38  Aligned_cols=157  Identities=13%  Similarity=0.117  Sum_probs=103.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEE--------------------------------------
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR--------------------------------------   53 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------   53 (217)
                      ...+|+|+|.+|||||||+++|++..+.+....+.+......                                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            455999999999999999999999877443322221000000                                      


Q ss_pred             --------------EEEE-CCeEEEEEEEeCCCchhh-------------hhhhHhhhcCCcEEEEEEeCCChhhHHHHH
Q 027894           54 --------------SIRV-EDKIVKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDVTRHVTFENVE  105 (217)
Q Consensus        54 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~  105 (217)
                                    .+.+ ......+.+|||||...+             ......++..+|++++++|..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                          0000 011235899999997654             566778899999999999876543221  2


Q ss_pred             HHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894          106 RWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus       106 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      .|+..+......+.|+++|+||+|+........+....+....+.+|+.++++++.++++.+..+
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence            33444444444678999999999997655444444444444567889999999887777655443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.78  E-value=1.9e-20  Score=157.60  Aligned_cols=150  Identities=22%  Similarity=0.203  Sum_probs=82.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-------------------------------CCCcccceeEEEEEEEEC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-------------------------------ESKSTIGVEFATRSIRVE   58 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   58 (217)
                      ....++|+++|++++|||||+++|+......                               ...+..+.+.....  +.
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~--~~  251 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTT--FE  251 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEE--EE
Confidence            4467899999999999999999996531100                               00112222222222  33


Q ss_pred             CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHhccCCCCCc-EEEEEeCCCCC
Q 027894           59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TF---ENVERWLKELRGHTDSNIV-IMLVGNKADLR  131 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~  131 (217)
                      .....+.||||||++.|...+...+..+|++|+|+|++++.   .+   ......+..+..   .++| +|+|+||+|+.
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~  328 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence            33467899999999999888888899999999999998642   11   111111222222   3455 89999999986


Q ss_pred             CcccC----CHHHHHHHH-HHcCC-----cEEEeccCCCCCHH
Q 027894          132 HLCAV----STEDAKAFA-ERENT-----FFMETSALESMNVE  164 (217)
Q Consensus       132 ~~~~~----~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~v~  164 (217)
                      +....    ...++..++ ...++     +++++||++|.|+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            42111    123334444 44454     69999999999998

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.78  E-value=1e-18  Score=145.26  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=78.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------------------CcccceeE--EEEEEEECCeEEEEEEEe
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES--------------------KSTIGVEF--ATRSIRVEDKIVKAQIWD   68 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~--------------------~~~~~~~~--~~~~~~~~~~~~~~~l~D   68 (217)
                      ....+|+++|++|+|||||+++|+...-....                    ....+++.  ....+.+.+  ..+.+||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            35689999999999999999999874211100                    00111111  112233333  6789999


Q ss_pred             CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      |||+..|......+++.+|++++|+|+++...... ..++..+.   ..++|+++++||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            99999988888889999999999999988654322 22333332   25789999999999853

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.77  E-value=3.2e-18  Score=134.10  Aligned_cols=163  Identities=13%  Similarity=0.149  Sum_probs=98.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccce-----eEEEE--------------------------------
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV-----EFATR--------------------------------   53 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~-----~~~~~--------------------------------   53 (217)
                      ...++|+|+|.+|+|||||+|+|++..+.+......+.     .....                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            45689999999999999999999998763322100000     00000                                


Q ss_pred             --------------------EEE-ECCeEEEEEEEeCCCchh-------------hhhhhHhhhcCCcEEEEEEeCCChh
Q 027894           54 --------------------SIR-VEDKIVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDVTRHV   99 (217)
Q Consensus        54 --------------------~~~-~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~   99 (217)
                                          .+. .......+.+|||||...             +......++..+|++++|+|.++..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                                000 011124689999999642             5566777889999999999975432


Q ss_pred             -hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC------CCCHHHHHHHHHH
Q 027894          100 -TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE------SMNVENAFTEVLT  172 (217)
Q Consensus       100 -s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~v~~~~~~i~~  172 (217)
                       .......+...+.   ..+.|+++|+||+|+........+.........+..++++++..      +.|+.++++.+.+
T Consensus       182 ~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~  258 (315)
T 1jwy_B          182 LANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL  258 (315)
T ss_dssp             STTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence             1111123333333   25689999999999975443222222211111225577776654      6888999988877


Q ss_pred             HHHH
Q 027894          173 QIYH  176 (217)
Q Consensus       173 ~~~~  176 (217)
                      .+..
T Consensus       259 ~~~~  262 (315)
T 1jwy_B          259 YFKN  262 (315)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            7653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=1.3e-19  Score=140.96  Aligned_cols=163  Identities=18%  Similarity=0.270  Sum_probs=86.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC-cCCCCC--------CcccceeEEEEEEEECCeEEEEEEEeCCCc-------h
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRN-EFSLES--------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQ-------E   73 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~   73 (217)
                      ....++|+++|++|+|||||+++|.+. .++...        .++.........+...+....+.+||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            346789999999999999999998875 333222        111111111112222344468899999997       4


Q ss_pred             hhhhhhH-------hhhcC-------------CcEEEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           74 RYRAITS-------AYYRG-------------AVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        74 ~~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      .+.....       .+++.             +++++++.+++. .+++.+. .++..+   . .+.++++|+||.|+..
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~-~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---H-NKVNIVPVIAKADTLT  169 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---T-TTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---H-hcCCEEEEEEeCCCCC
Confidence            4444333       33322             344555555432 1233322 233333   2 4678999999999865


Q ss_pred             cccC--CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          133 LCAV--STEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       133 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      ..++  ..+++.+++..++++++++||+++ +++++|..+.+.+.+..
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            3332  245677888889999999999999 99999999998886443

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.76  E-value=3.2e-17  Score=140.55  Aligned_cols=120  Identities=16%  Similarity=0.109  Sum_probs=84.6

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCc--CCCC------C----------CcccceeEEEEEEEEC-----CeEEEEE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNE--FSLE------S----------KSTIGVEFATRSIRVE-----DKIVKAQ   65 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~--~~~~------~----------~~~~~~~~~~~~~~~~-----~~~~~~~   65 (217)
                      ......+|+++|+.|+|||||+++|+...  +...      .          ....++......+.+.     +..+.+.
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            34567899999999999999999997531  1100      0          0111222222223332     2337899


Q ss_pred             EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      +|||||+..|...+..+++.+|++++|+|+++....+....|... ..   .+.|+++|+||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~-~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA-NK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH-HH---cCCCEEEEEeCCCccc
Confidence            999999999988888999999999999999988766555555332 22   5689999999999853

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.76  E-value=1.3e-18  Score=140.28  Aligned_cols=161  Identities=15%  Similarity=0.196  Sum_probs=83.1

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------CcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-----
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES--------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-----   76 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----   76 (217)
                      ....++|+|+|++|+|||||++.|++..+....        ..+.........+...+....+++||++|...+.     
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            445788999999999999999999998763211        1121111111112223334578999999965431     


Q ss_pred             --hh------------------hHhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894           77 --AI------------------TSAYYRGAVGALLVYDVTRH-VTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        77 --~~------------------~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                        .+                  ...++.++++.+++|+.... .+++... .|+..+.    .+.|+|+|+||+|+....
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence              11                  12234455544444444332 3444443 4666664    478999999999986544


Q ss_pred             cCCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          135 AVST--EDAKAFAERENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      ++..  .++.+++...+++++++|+.++.++.++|..+.+.+
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            4443  566777788899999999999999998877666543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.75  E-value=3.5e-18  Score=131.13  Aligned_cols=124  Identities=15%  Similarity=0.102  Sum_probs=80.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh-------hHhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI-------TSAY   82 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~   82 (217)
                      ...++|+++|.+|+|||||+++|++..+.... ....+.......+...+  ..+.+|||||...+...       ...+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            35799999999999999999999998763322 12222222333333444  67999999997554321       1112


Q ss_pred             --hcCCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCC--CcEEEEEeCCCCCCcccCC
Q 027894           83 --YRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSN--IVIMLVGNKADLRHLCAVS  137 (217)
Q Consensus        83 --~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~iiv~nK~D~~~~~~~~  137 (217)
                        .+.+|++++|+|++.. ++... ..|+..+......+  .|+++|+||+|+.......
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~  173 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  173 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence              2468999999998653 23322 35666665443222  6999999999996544333

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.75  E-value=3.8e-17  Score=139.92  Aligned_cols=117  Identities=17%  Similarity=0.169  Sum_probs=84.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC--cCCCC---C-------------CcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRN--EFSLE---S-------------KSTIGVEFATRSIRVEDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .....+|+++|++|+|||||+++|+..  .+...   .             ....+.......+.+.+  ..+.+|||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            456789999999999999999999852  21100   0             01111112222333444  6789999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      +..+...+..+++.+|++++|+|+++..+.+....|.. +..   .+.|+++|+||+|+..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            99888888889999999999999999877776666544 332   4689999999999853

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.74  E-value=1.2e-18  Score=135.65  Aligned_cols=134  Identities=16%  Similarity=0.108  Sum_probs=109.3

Q ss_pred             HHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHH
Q 027894           28 NLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVE  105 (217)
Q Consensus        28 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~  105 (217)
                      +|+.++..+.|. ..+.+|.+..+. ..+..++   .+.+||+  ++++..++..+++++|++++|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688899999988 778899885544 3222222   6899999  8899999999999999999999999997 788899


Q ss_pred             HHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHH
Q 027894          106 RWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN--TFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus       106 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      .|+..+..   .++|+++|+||+|+.+.+.+  ++..+++..++  ++++++||+++.|++++|..+..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99987765   47999999999999654332  44667777777  89999999999999999987753

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=1.3e-18  Score=139.78  Aligned_cols=85  Identities=20%  Similarity=0.243  Sum_probs=47.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCccccee--EEEEEEE-------------------ECC-eEEEEEEEeCCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE--FATRSIR-------------------VED-KIVKAQIWDTAG   71 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~--~~~~~~~-------------------~~~-~~~~~~l~Dt~G   71 (217)
                      ++|+++|.+|+|||||+|+|++........+..+.+  .....+.                   +.+ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            589999999999999999999887322222222221  1111111                   122 247899999999


Q ss_pred             chh----hhhhhH---hhhcCCcEEEEEEeCCCh
Q 027894           72 QER----YRAITS---AYYRGAVGALLVYDVTRH   98 (217)
Q Consensus        72 ~~~----~~~~~~---~~~~~~d~ii~v~d~~~~   98 (217)
                      ...    ...+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            743    222222   346899999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.69  E-value=2.6e-17  Score=122.46  Aligned_cols=156  Identities=15%  Similarity=0.073  Sum_probs=96.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCccccee--------------EEEEEEEE----------------CCeE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE--------------FATRSIRV----------------EDKI   61 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~   61 (217)
                      ...+|+++|.+|||||||+++|+..............+              .....+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            35789999999999999999998763221110000000              00111111                0122


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  141 (217)
                      ..+.+|||+|+-..   ...+....+.+++|+|+.+....  ...+...      .+.|+++|+||+|+........++.
T Consensus       109 ~d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence            56889999995110   01111356889999998765421  1111111      2467899999999865333455666


Q ss_pred             HHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          142 KAFAERE--NTFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       142 ~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                      ...+...  +++++++||+++.|++++|++|.+.+....
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            6666553  478999999999999999999998876543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.69  E-value=8.8e-18  Score=133.59  Aligned_cols=159  Identities=15%  Similarity=0.157  Sum_probs=94.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcc----cce----------------------e----------------
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKST----IGV----------------------E----------------   49 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~----~~~----------------------~----------------   49 (217)
                      ..++|+|+|.+|+|||||+++|++..+.+.....    .+.                      +                
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999998874322111    110                      0                


Q ss_pred             -------EEEEEEEE-CCeEEEEEEEeCCCch-------------hhhhhhHhhhcCCc-EEEEEEeCCChhhHHHHHHH
Q 027894           50 -------FATRSIRV-EDKIVKAQIWDTAGQE-------------RYRAITSAYYRGAV-GALLVYDVTRHVTFENVERW  107 (217)
Q Consensus        50 -------~~~~~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~  107 (217)
                             .....+.+ ......+.+|||||..             .+..+...++...+ ++++|++.+....-.+...+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i  189 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV  189 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence                   00000111 0112568999999952             34556666776655 45556665542221122223


Q ss_pred             HHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH--HHHHcC-CcEEEeccCCCCCHHHHHHHHHHH
Q 027894          108 LKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA--FAEREN-TFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       108 ~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      +..+.   ..+.|+++|+||+|+.+...........  +....+ .+++++||+++.|++++++++.+.
T Consensus       190 ~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          190 AKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             HHHHC---TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             HHHhC---cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            33333   3578999999999996543322221110  000122 357889999999999999998773

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=8.5e-16  Score=121.42  Aligned_cols=146  Identities=16%  Similarity=0.129  Sum_probs=91.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCe---------------EEEEEEEeCCCchhhh-
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK---------------IVKAQIWDTAGQERYR-   76 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~-   76 (217)
                      .++|+++|.+|+|||||+|+|++........+..+.......+.+.+.               ...+.+|||||...+. 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            378999999999999999999997743322222222222223334432               1468999999976542 


Q ss_pred             ---hh---hHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHH------------------------------
Q 027894           77 ---AI---TSAYYRGAVGALLVYDVTRH----------VTFENVERWLKE------------------------------  110 (217)
Q Consensus        77 ---~~---~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~------------------------------  110 (217)
                         .+   ....++.+|++++|+|+++.          +++++++.+...                              
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence               12   23357899999999999862          333333221111                              


Q ss_pred             ----------Hhc-------------------c-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccC
Q 027894          111 ----------LRG-------------------H-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSAL  158 (217)
Q Consensus       111 ----------l~~-------------------~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                                +..                   . ....+|+++++|+.|...........+..++...+.+++++||+
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                      111                   0 11348999999999964211223566777888889999999965

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.67  E-value=1.3e-15  Score=127.11  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=82.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc------------------C----CCCCCcccceeEEEEEEEECCeEEEEEEEeC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNE------------------F----SLESKSTIGVEFATRSIRVEDKIVKAQIWDT   69 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   69 (217)
                      ..-+|+|+|+.++|||||..+|+...                  +    ........++......+.+.+  .++.|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            35789999999999999999996321                  0    001112222223333444555  67899999


Q ss_pred             CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      ||+..|..-....++-+|++++|+|+...-.-+....|.....    .++|.++++||+|..
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----~~lp~i~fINK~Dr~  165 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----RATPVMTFVNKMDRE  165 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCCEEEEEECTTSC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH----hCCceEEEEecccch
Confidence            9999999889999999999999999998776666666654443    679999999999984

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.66  E-value=1.4e-16  Score=126.69  Aligned_cols=105  Identities=14%  Similarity=0.072  Sum_probs=70.4

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC--HH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--TE  139 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~  139 (217)
                      +.+.+|||||...   .....+..+|++++|+|....+.+..+..   .     ..+.|+++|+||+|+.......  ..
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~-----~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---G-----VLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---T-----SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---h-----HhhcCCEEEEECCCCcChhHHHHHHH
Confidence            5789999999432   22334588999999999876654322211   0     1346889999999985422111  11


Q ss_pred             HHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894          140 DAKAFAER-------ENTFFMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       140 ~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                      +.......       ++.+++++||++++|+++++++|.+.+...
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~  285 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL  285 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            12222111       257899999999999999999999988653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.64  E-value=3.1e-18  Score=127.89  Aligned_cols=154  Identities=13%  Similarity=0.109  Sum_probs=91.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEE------------EEEEEEC-Ce------------------
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFA------------TRSIRVE-DK------------------   60 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   60 (217)
                      ..++|+++|.+|||||||+++|+...+......+.+.++.            ...+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4589999999999999999999987654433333332221            1111111 10                  


Q ss_pred             -EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH
Q 027894           61 -IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE  139 (217)
Q Consensus        61 -~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~  139 (217)
                       ...+.++|++|.-...   ..+-...+..+.++|.........  .+...      .+.|.++|+||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence             0135555555521000   011122344556666432211100  00011      13677999999998654445666


Q ss_pred             HHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          140 DAKAFAERE--NTFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       140 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      +...++...  +++++++||+++.|++++|+++.+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            677776654  5789999999999999999999887754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.64  E-value=7.7e-16  Score=134.39  Aligned_cols=117  Identities=20%  Similarity=0.198  Sum_probs=86.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCc--ccceeEEEEEEE------------ECCe
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKS--TIGVEFATRSIR------------VEDK   60 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------------~~~--~~~~~~~~~~~~------------~~~~   60 (217)
                      ....+|+++|+.++|||||+++|+...-...                ...  |.........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            4568999999999999999999987521110                011  111111222222            1334


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      .+.+.+|||||+..|...+..+++.+|++++|+|++++.+++....|.....    .+.|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            6889999999999999999999999999999999999988887766655443    568999999999985

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.62  E-value=2.3e-14  Score=113.88  Aligned_cols=153  Identities=20%  Similarity=0.148  Sum_probs=100.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------YRAITSAYY   83 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~   83 (217)
                      ....+|+++|.||||||||+|+|++........+..+.+.....+.+.+  .+++++||||...       ........+
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            4467999999999999999999999876555556667777777777877  5689999999421       112223456


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHhccC--CCCCcEEEEEeCCCCCC--------cccCCHHHHHHHHHHcCCcEE
Q 027894           84 RGAVGALLVYDVTRHVTFENVERWLKELRGHT--DSNIVIMLVGNKADLRH--------LCAVSTEDAKAFAERENTFFM  153 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~  153 (217)
                      +.+|++++|+|++++..  +.+.....+....  ..+.|.++++||.|...        ......++.+.+...+.+.--
T Consensus       148 ~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k  225 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA  225 (376)
T ss_dssp             HHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred             HhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence            88999999999998743  3333333333221  14577788999999732        223456666666665554322


Q ss_pred             EeccCCCCCHHHHH
Q 027894          154 ETSALESMNVENAF  167 (217)
Q Consensus       154 ~~Sa~~~~~v~~~~  167 (217)
                      ++--..+...+++.
T Consensus       226 pv~~~~nv~eddl~  239 (376)
T 4a9a_A          226 EIAFRCDATVDDLI  239 (376)
T ss_dssp             EEEECSCCCHHHHH
T ss_pred             CeeecccCCHHHHH
Confidence            22223334444443

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.62  E-value=6e-16  Score=129.25  Aligned_cols=122  Identities=20%  Similarity=0.232  Sum_probs=82.7

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC---CCCCcccceeEEEEE-----EEECCe---------------E---
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFS---LESKSTIGVEFATRS-----IRVEDK---------------I---   61 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~---------------~---   61 (217)
                      ...+..++|+|+|.+|+|||||+|+|++..+.   ....++.+.......     +..+..               .   
T Consensus        60 ~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~  139 (550)
T 2qpt_A           60 ADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF  139 (550)
T ss_dssp             TTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CC
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence            34556799999999999999999999998864   222222211000000     000000               0   


Q ss_pred             --------------EEEEEEeCCCchh-----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC
Q 027894           62 --------------VKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD  116 (217)
Q Consensus        62 --------------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~  116 (217)
                                    ..+.+|||||...           +...+..++..+|++++|+|+++....+....++..+..   
T Consensus       140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---  216 (550)
T 2qpt_A          140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---  216 (550)
T ss_dssp             CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---
T ss_pred             cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---
Confidence                          2589999999754           456667788999999999999886555555566655543   


Q ss_pred             CCCcEEEEEeCCCCCC
Q 027894          117 SNIVIMLVGNKADLRH  132 (217)
Q Consensus       117 ~~~p~iiv~nK~D~~~  132 (217)
                      .+.|+++|+||+|+..
T Consensus       217 ~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          217 HEDKIRVVLNKADMVE  232 (550)
T ss_dssp             CGGGEEEEEECGGGSC
T ss_pred             cCCCEEEEEECCCccC
Confidence            4588999999999864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.61  E-value=2.1e-15  Score=119.79  Aligned_cols=154  Identities=18%  Similarity=0.104  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC-------------------eEEEEEEEeCCCchh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-------------------KIVKAQIWDTAGQER   74 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~   74 (217)
                      ++|+++|.+|+|||||+++|++........+..+.........+.+                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999998753222212112221122222221                   235689999999754


Q ss_pred             hh-------hhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHH----------------------------
Q 027894           75 YR-------AITSAYYRGAVGALLVYDVTRH----------VTFENVERWLK----------------------------  109 (217)
Q Consensus        75 ~~-------~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~----------------------------  109 (217)
                      ..       ......++.+|++++|+|+++.          +.+.++..+..                            
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            31       2223457899999999999851          22222211100                            


Q ss_pred             -----------HHhcc-------------------C-CCCCcEEEEEeCCCCC--Cc-ccCCHHHHHHHHHHcCCcEEEe
Q 027894          110 -----------ELRGH-------------------T-DSNIVIMLVGNKADLR--HL-CAVSTEDAKAFAERENTFFMET  155 (217)
Q Consensus       110 -----------~l~~~-------------------~-~~~~p~iiv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~  155 (217)
                                 .+...                   . ...+|+++++||.|..  +. +......+..+++..+.+++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                       01110                   0 1237999999999842  21 1233566778888889999999


Q ss_pred             ccCCCCCHHHHH
Q 027894          156 SALESMNVENAF  167 (217)
Q Consensus       156 Sa~~~~~v~~~~  167 (217)
                      ||+...++.++.
T Consensus       242 SAk~E~el~eL~  253 (368)
T 2dby_A          242 SARLEAELAELS  253 (368)
T ss_dssp             CHHHHHHHHTSC
T ss_pred             echhHHHHHHhc
Confidence            998765555443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.59  E-value=5.8e-16  Score=122.71  Aligned_cols=103  Identities=9%  Similarity=0.023  Sum_probs=62.7

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  141 (217)
                      +.+.++||+|....   .......+|++++|+|++.+...+.+..   .+     .+.|.++|+||+|+.+.... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            46899999995321   2334678999999999987643322211   11     24577999999998531110 0111


Q ss_pred             HHHHH----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          142 KAFAE----------RENTFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       142 ~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      ..+..          .+..+++.+||++++|+++++++|.+.+..
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            12211          124578999999999999999999987644

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.57  E-value=8.3e-16  Score=130.64  Aligned_cols=114  Identities=18%  Similarity=0.163  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC--------C---CC-----cccceeEEEEEEEECCeEEEEEEEeCCCchhhhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL--------E---SK-----STIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA   77 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~--------~---~~-----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   77 (217)
                      -||+|+|+.++|||||..+|+...-..        .   ..     ..-+++.....+.+.....+++++||||+..|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            479999999999999999986421100        0   00     0002222222223333446789999999999999


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      .....++-+|++++|+|+...-.-+....|.....    .++|.++++||+|..
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~----~~lp~i~~INKmDr~  132 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK----MGIPTIFFINKIDQN  132 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH----HTCSCEECCEECCSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEeccccc
Confidence            99999999999999999998765555555544443    468889999999974

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.54  E-value=3.4e-14  Score=108.22  Aligned_cols=112  Identities=13%  Similarity=-0.089  Sum_probs=68.5

Q ss_pred             EEEEEEeCCCchhhhhhhH------hhhcCCcEEEEEEeCCChhhHHHHHHHHH-HHhccCCCCCcEEEEEeCCCCCCcc
Q 027894           62 VKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDVTRHVTFENVERWLK-ELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~-~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                      +.+.+|||||+........      ..+.. +++++++|.....+..+...... ........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4689999999865533221      23455 88899998764333222221111 1111111368899999999986432


Q ss_pred             cCCHHHHHH----------------------------HHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          135 AVSTEDAKA----------------------------FAEREN--TFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       135 ~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      ..  ++..+                            ++..++  ++++++||++++|+++++++|.+.+..
T Consensus       188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            11  11111                            123333  479999999999999999999887653

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.54  E-value=1.5e-14  Score=123.68  Aligned_cols=159  Identities=13%  Similarity=0.131  Sum_probs=98.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccce------------------------------------------
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV------------------------------------------   48 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~------------------------------------------   48 (217)
                      ...++|+|+|.+++|||||+|+|++..+.+......+.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            45689999999999999999999998774322111110                                          


Q ss_pred             ---------eEEEEEEEECCeEEEEEEEeCCCch-------------hhhhhhHhhh-cCCcEEEEEEeCCChhhHHHHH
Q 027894           49 ---------EFATRSIRVEDKIVKAQIWDTAGQE-------------RYRAITSAYY-RGAVGALLVYDVTRHVTFENVE  105 (217)
Q Consensus        49 ---------~~~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~  105 (217)
                               ......+...+ ...+.++||||-.             .+......++ ..+|++++|+|++....-.+..
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                     00011111111 1257899999932             2333444444 5789999999998754333332


Q ss_pred             HHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH-H-HHHcC-CcEEEeccCCCCCHHHHHHHHHHH
Q 027894          106 RWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA-F-AEREN-TFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       106 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      .++..+..   .+.|+++|+||+|+............. . ....+ .+++.+||+++.|++++++.+.+.
T Consensus       208 ~ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            34444432   568999999999997543332221110 0 00012 357889999999999999998863

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.53  E-value=2.1e-13  Score=117.38  Aligned_cols=118  Identities=16%  Similarity=0.154  Sum_probs=83.1

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCc--------CCC----------CCCcccceeEEEEEEEECC-----eEEEEEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE--------FSL----------ESKSTIGVEFATRSIRVED-----KIVKAQI   66 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~l   66 (217)
                      -+..-+|+|+|+.++|||||..+|+...        ...          ......++.-....+.+.+     ..+.++|
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl   89 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV   89 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence            3556789999999999999999986421        100          1111222222233333321     2578999


Q ss_pred             EeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        67 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      +||||+-.|..-....++-+|++++|+|+...-..+....|.....    .++|.++++||+|..
T Consensus        90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred             EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence            9999999999888889999999999999998766555556655554    578999999999974

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.53  E-value=3.5e-15  Score=118.02  Aligned_cols=104  Identities=13%  Similarity=0.085  Sum_probs=65.4

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH--H
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST--E  139 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--~  139 (217)
                      +.+.+|||||......   .....+|++++|+|++....++.+..   ..     .+.|.++|+||+|+........  +
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            5789999999654332   24688999999999976543221111   00     1357899999999854211110  1


Q ss_pred             HHHHHHHHc-------CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          140 DAKAFAERE-------NTFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       140 ~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      +........       ..+++++||+++.|+++++++|.+.+..
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~  261 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  261 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            222222221       3568999999999999999999987753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.44  E-value=1.2e-13  Score=108.97  Aligned_cols=103  Identities=12%  Similarity=0.055  Sum_probs=63.0

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  141 (217)
                      ..+.++||+|...-.   ......+|.+++++|....+..+.+...   +     .+.+.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i-----~~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---I-----FELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---H-----HHHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---H-----hccccEEEEEchhccCchhHHHHHH
Confidence            578999999964321   1235789999999998654322111111   1     1234577789999743222222222


Q ss_pred             HHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          142 KAFAER----------ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       142 ~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      ..+...          +..+++.+||+++.|++++++.|.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            333221          1457899999999999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.44  E-value=2.3e-13  Score=105.79  Aligned_cols=97  Identities=12%  Similarity=0.007  Sum_probs=79.2

Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC-HHHHHHHHHHcC
Q 027894           72 QERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS-TEDAKAFAEREN  149 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~  149 (217)
                      ++++..+...+++++|++++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.+...+. .++..+++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5667777778999999999999999986 88888999887765   579999999999986533222 344566667778


Q ss_pred             CcEEEeccCCCCCHHHHHHHHH
Q 027894          150 TFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus       150 ~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      ++++++||+++.|++++++.+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            9999999999999999998763

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.35  E-value=7.5e-13  Score=105.62  Aligned_cols=88  Identities=17%  Similarity=0.150  Sum_probs=52.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCe---------------EEEEEEEeCCCchhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK---------------IVKAQIWDTAGQERY   75 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   75 (217)
                      ...++|+++|.+|+|||||+|+|++..+.....++.+.......+.+.+.               ...+.+|||||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            34689999999999999999999998764444444444444444444432               235899999997654


Q ss_pred             hh-------hhHhhhcCCcEEEEEEeCCCh
Q 027894           76 RA-------ITSAYYRGAVGALLVYDVTRH   98 (217)
Q Consensus        76 ~~-------~~~~~~~~~d~ii~v~d~~~~   98 (217)
                      .+       ....+++.+|++++|+|+.+.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            33       455678999999999999753

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.34  E-value=2.2e-11  Score=97.30  Aligned_cols=87  Identities=16%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCcccceeEEEEEEEECCe---------------EEEEEEEeCCCch-
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRVEDK---------------IVKAQIWDTAGQE-   73 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~-   73 (217)
                      ....+|+++|.+|+|||||+|.|++... .....++.+.....-.+.+.+.               ...+.+||+||.. 
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3457999999999999999999999765 3333344444444444555441               1357999999942 


Q ss_pred             ------hhhhhhHhhhcCCcEEEEEEeCCC
Q 027894           74 ------RYRAITSAYYRGAVGALLVYDVTR   97 (217)
Q Consensus        74 ------~~~~~~~~~~~~~d~ii~v~d~~~   97 (217)
                            .+.......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  223334556789999999999863

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.29  E-value=2.2e-12  Score=93.29  Aligned_cols=102  Identities=9%  Similarity=-0.043  Sum_probs=69.5

Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHH----HHHhccC-CCCCcEEEEEeCC-CCCCcccCCHHHHHHH
Q 027894           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWL----KELRGHT-DSNIVIMLVGNKA-DLRHLCAVSTEDAKAF  144 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~----~~l~~~~-~~~~p~iiv~nK~-D~~~~~~~~~~~~~~~  144 (217)
                      |+..++.+|..|+.++|++|||+|.+|..-++ ....+    ..+.... ..+.|++|++||. |++.  ..+..++.+.
T Consensus       111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~  187 (227)
T 3l82_B          111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHE  187 (227)
T ss_dssp             ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHH
Confidence            78899999999999999999999999875443 32222    2222221 2678999999995 6754  4555555444


Q ss_pred             HH----HcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          145 AE----RENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       145 ~~----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      ..    ...+.+..|||.+|+|+.+.++|+.+.+.
T Consensus       188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            32    13466999999999999999999987653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.14  E-value=5e-11  Score=90.40  Aligned_cols=105  Identities=9%  Similarity=-0.032  Sum_probs=74.3

Q ss_pred             CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHH---HHHHHHHHHhccC-CCCCcEEEEEeC-CCCCCcccCCHHHHHH
Q 027894           69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFE---NVERWLKELRGHT-DSNIVIMLVGNK-ADLRHLCAVSTEDAKA  143 (217)
Q Consensus        69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~l~~~~-~~~~p~iiv~nK-~D~~~~~~~~~~~~~~  143 (217)
                      .+||++++..|..|+.++|++|||+|.+|.+-++   ++..+...+.... ..+.|++|++|| .|++.  ..+..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            3578899999999999999999999999976443   2222222232211 267999999997 58754  455555544


Q ss_pred             HHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894          144 FAER----ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       144 ~~~~----~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      ....    ..+.+..+||.+|+|+.+.++|+.+.+.
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            3321    3466999999999999999999998764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.07  E-value=2.4e-11  Score=96.92  Aligned_cols=140  Identities=15%  Similarity=0.157  Sum_probs=82.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC-----c-CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh--------hhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN-----E-FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR--------AIT   79 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~   79 (217)
                      .+|+++|.+|+|||||+|+|++.     . ......+  +++.....+.+...   +.++||||.....        ...
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999986     2 2111222  23333344444432   7999999942111        111


Q ss_pred             Hhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894           80 SAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus        80 ~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ..++  ...+.++++++....-.+..+..    +......+.|+++++||.|....... ......+.+..+..+++.++
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence            2222  67899999999843211111111    12222356899999999998653322 23344455566777776676


Q ss_pred             CCCCCH
Q 027894          158 LESMNV  163 (217)
Q Consensus       158 ~~~~~v  163 (217)
                      ....++
T Consensus       313 ~~~~~~  318 (369)
T 3ec1_A          313 RYAAEF  318 (369)
T ss_dssp             GGTTTC
T ss_pred             hhhhhc
Confidence            654443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.01  E-value=3.2e-09  Score=85.51  Aligned_cols=140  Identities=16%  Similarity=0.220  Sum_probs=68.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc--ccceeEEEEEEEE--CCeEEEEEEEeCCCchhh-------------
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS--TIGVEFATRSIRV--EDKIVKAQIWDTAGQERY-------------   75 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~-------------   75 (217)
                      .++++|+|++|+|||||++.|.+..+......  ..+.......+..  .+....+.++|++|....             
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            36799999999999999999998754321111  1111111122212  222346899999883211             


Q ss_pred             -hhhh----Hhh---------hcC--CcE-EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH
Q 027894           76 -RAIT----SAY---------YRG--AVG-ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST  138 (217)
Q Consensus        76 -~~~~----~~~---------~~~--~d~-ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~  138 (217)
                       ...+    ..+         ...  +|+ ++++.|...+-+..++ .++..+   . .+.|+|+|+||+|.....+...
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L---~-~~~~vI~Vi~KtD~Lt~~E~~~  196 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL---D-SKVNIIPIIAKADAISKSELTK  196 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT---C-SCSEEEEEESCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH---h-hCCCEEEEEcchhccchHHHHH
Confidence             1111    111         112  233 4555555443332222 222333   2 5789999999999753222111


Q ss_pred             --HHHHHHHHHcCCcEEEecc
Q 027894          139 --EDAKAFAERENTFFMETSA  157 (217)
Q Consensus       139 --~~~~~~~~~~~~~~~~~Sa  157 (217)
                        ..+.......++++|.+|.
T Consensus       197 l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          197 FKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHcCCcEEecCC
Confidence              1112212335677777774

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.00  E-value=2.6e-11  Score=96.66  Aligned_cols=136  Identities=11%  Similarity=0.155  Sum_probs=76.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-----CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhH
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-----ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR--------AITS   80 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~   80 (217)
                      .+|+++|.+|+|||||+|+|++.....     ......+++.....+.+...   +.++||||.....        ....
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999999863211     11122233333344444432   7899999942211        1111


Q ss_pred             hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894           81 AY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus        81 ~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      .+  ....+.++++++......+..+..    +......+.|+++++||.|...... .......+.+..+..+++.++
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSCH
T ss_pred             HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCch
Confidence            11  256788899998743211111111    1222235689999999999865322 223334444556666555554

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.00  E-value=1.9e-09  Score=85.89  Aligned_cols=96  Identities=20%  Similarity=0.219  Sum_probs=72.3

Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH----HHH
Q 027894           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA----FAE  146 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~  146 (217)
                      ..+.|...+..+.+.++++++|+|++++.     ..|...+.... .+.|+++|+||+|+.+. ....+...+    ++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence            35789999999999999999999999864     34444444433 47899999999999653 233333433    356


Q ss_pred             HcCC---cEEEeccCCCCCHHHHHHHHHHH
Q 027894          147 RENT---FFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       147 ~~~~---~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      ..++   .++.+||+++.|++++++.+.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6677   79999999999999999988654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.97  E-value=1.9e-09  Score=82.24  Aligned_cols=137  Identities=20%  Similarity=0.211  Sum_probs=70.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-------cccceeEEEEEEEEC--CeEEEEEEEeCCCchh---------
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-------STIGVEFATRSIRVE--DKIVKAQIWDTAGQER---------   74 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~---------   74 (217)
                      .++++++|++|+|||||++.|.+...+....       ...........+...  .....++++|++|...         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            5899999999999999999998864332110       000000001111111  1123679999998211         


Q ss_pred             -h--------hhhhHh----------hhcCCcEEEEEEeCCC-hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894           75 -Y--------RAITSA----------YYRGAVGALLVYDVTR-HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        75 -~--------~~~~~~----------~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                       .        ......          .+..+++.++++|... +-.-.+ ..++..+..   . .++++|++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence             0        000000          1223688899998653 222122 233444442   3 8999999999975422


Q ss_pred             cCC--HHHHHHHHHHcCCcEEE
Q 027894          135 AVS--TEDAKAFAERENTFFME  154 (217)
Q Consensus       135 ~~~--~~~~~~~~~~~~~~~~~  154 (217)
                      +..  ..........+++.+|+
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            211  12233344556777664

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.97  E-value=3.9e-10  Score=92.91  Aligned_cols=151  Identities=15%  Similarity=0.136  Sum_probs=83.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHh------hCcCCCCC----Ccc-----------cceeEEEEEEE-------------E
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFT------RNEFSLES----KST-----------IGVEFATRSIR-------------V   57 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~------~~~~~~~~----~~~-----------~~~~~~~~~~~-------------~   57 (217)
                      ....|+++|.+||||||++++|.      +.......    .+.           .+..+......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998      32210000    000           01111110000             0


Q ss_pred             CCeEEEEEEEeCCCchhhh-hhh---Hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcE-EEEEeCCCC
Q 027894           58 EDKIVKAQIWDTAGQERYR-AIT---SAY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVI-MLVGNKADL  130 (217)
Q Consensus        58 ~~~~~~~~l~Dt~G~~~~~-~~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~nK~D~  130 (217)
                      ....+++.|+||||..... ..+   ...  +..+|.+++|+|+.......   .....+..    ..|+ ++|+||.|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence            0023578999999964221 111   111  23789999999998754321   11222221    1454 788999998


Q ss_pred             CCcccCCHHHHHHHHHHcCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q 027894          131 RHLCAVSTEDAKAFAERENTFF------------------METSALESMN-VENAFTEVLTQ  173 (217)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-v~~~~~~i~~~  173 (217)
                      ....  .  .........+.|+                  +.+|+..+.| +.++++++.+.
T Consensus       253 ~~~~--g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKG--G--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCC--T--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccch--H--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            5321  1  1222333444443                  3468888988 98888888765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.85  E-value=2.8e-09  Score=84.94  Aligned_cols=97  Identities=16%  Similarity=0.154  Sum_probs=70.7

Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH----HHH
Q 027894           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA----FAE  146 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~  146 (217)
                      .++.|......+++.++++++|+|++++.+     .|...+.... .+.|+++|+||+|+.+. ....+...+    ++.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence            478899999999999999999999999774     2332233222 47899999999999653 233333333    355


Q ss_pred             HcCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 027894          147 RENT---FFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       147 ~~~~---~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      ..+.   .++.+||+++.|++++++.+.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            5676   689999999999999998886643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.80  E-value=1.4e-08  Score=78.06  Aligned_cols=102  Identities=14%  Similarity=0.048  Sum_probs=70.5

Q ss_pred             EEeCCCch-hhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHH
Q 027894           66 IWDTAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFE--NVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAK  142 (217)
Q Consensus        66 l~Dt~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  142 (217)
                      +-..||+. .........+..+|+++.|+|+.++.+..  .+..++        .++|.++|+||+|+.+..  ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence            34578875 44455666788999999999999987754  333332        468999999999986521  112233


Q ss_pred             HHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894          143 AFAERENTFFMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       143 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                      ++.+..+++++.+||.++.|++++++.+.+.+...
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            44445678999999999999999999888877644

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.80  E-value=1.5e-07  Score=75.85  Aligned_cols=159  Identities=14%  Similarity=0.136  Sum_probs=83.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEE-EEEEECCeEEEEEEEeCCCchhh----hhhh-HhhhcCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFAT-RSIRVEDKIVKAQIWDTAGQERY----RAIT-SAYYRGA   86 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~----~~~~-~~~~~~~   86 (217)
                      ..++++|++|+|||||+|.+.+...+.... ...+.+... ..+.-......+.+||++|-...    .... ..-+...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            479999999999999999999853322111 111111000 11111111124789999984211    1111 1122334


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC-------CcccCCHHHH----HHHH----HHcC--
Q 027894           87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR-------HLCAVSTEDA----KAFA----EREN--  149 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~-------~~~~~~~~~~----~~~~----~~~~--  149 (217)
                      +..++ ++..... -+.+ .+...+..   .+.|+++|.||.|+.       .-......+.    .++.    .+.+  
T Consensus       150 ~~~~~-lS~G~~~-kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~  223 (413)
T 1tq4_A          150 DFFII-ISATRFK-KNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA  223 (413)
T ss_dssp             SEEEE-EESSCCC-HHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCeEE-eCCCCcc-HHHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            55554 7765211 1111 12222322   358999999999973       1112233332    3332    1222  


Q ss_pred             -CcEEEecc--CCCCCHHHHHHHHHHHHHHHh
Q 027894          150 -TFFMETSA--LESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       150 -~~~~~~Sa--~~~~~v~~~~~~i~~~~~~~~  178 (217)
                       ..++.+|+  ..+.|++++.+.+.+.+.+..
T Consensus       224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             SCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence             35788999  556679999988887765443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.65  E-value=2.4e-08  Score=76.63  Aligned_cols=58  Identities=22%  Similarity=0.435  Sum_probs=36.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      ...++|+++|.+|+|||||+|+|.+....... ...+.+.....+..+.   .+.+|||||.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~  175 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGI  175 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEEeCC---CEEEEECcCc
Confidence            34689999999999999999999987643322 2222332223333333   4789999994

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.59  E-value=1.4e-08  Score=77.15  Aligned_cols=56  Identities=21%  Similarity=0.355  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE   73 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (217)
                      ++|+++|.+|+|||||+|+|.+...... .++.+.+.....+....   .+.+|||||..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence            6999999999999999999998765332 22333333223333332   47999999964

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.57  E-value=1.5e-07  Score=76.19  Aligned_cols=86  Identities=15%  Similarity=0.020  Sum_probs=52.4

Q ss_pred             EEEEEEeCCCchhh-----hhhh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERY-----RAIT-SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~-----~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      +.+.++||+|....     ..+. ......+|.+++|+|+.......   .....+...   -.+..+|+||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCcc---
Confidence            57899999994221     1111 11234578999999998754322   222333321   234578899999743   


Q ss_pred             CCHHHHHHHHHHcCCcEEEecc
Q 027894          136 VSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                       ....+..+....+.|+.+++.
T Consensus       254 -~gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          254 -KGGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             -SHHHHHHHHHTTCCCEEEEEC
T ss_pred             -cccHHHHHHHHHCCCEEEEEc
Confidence             334455666678899877775

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.50  E-value=7.4e-07  Score=72.33  Aligned_cols=83  Identities=16%  Similarity=0.035  Sum_probs=48.5

Q ss_pred             EEEEEEeCCCchhhh----hhhHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCC-c-EEEEEeCCCCCCc
Q 027894           62 VKAQIWDTAGQERYR----AITSA--YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNI-V-IMLVGNKADLRHL  133 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~----~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~iiv~nK~D~~~~  133 (217)
                      +.+.++||||.....    .....  .+..+|.+++|+|+.....   .......+.    ... | ..+|+||.|... 
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~-  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA-  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS-
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc-
Confidence            568999999954321    11111  1236899999999876532   222222332    234 5 788999999743 


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEe
Q 027894          134 CAVSTEDAKAFAERENTFFMET  155 (217)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~  155 (217)
                         .......+....+.++.++
T Consensus       253 ---~~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 ---KGGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ---TTHHHHHHHHHSSCCEEEE
T ss_pred             ---chHHHHHHHHHHCCCEEEe
Confidence               1123444666677776555

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.38  E-value=3e-07  Score=74.37  Aligned_cols=90  Identities=12%  Similarity=0.004  Sum_probs=54.2

Q ss_pred             EEEEEEeCCCchh------hhhhhHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894           62 VKAQIWDTAGQER------YRAITSA--YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        62 ~~~~l~Dt~G~~~------~~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  133 (217)
                      ..+.++||||...      +......  .....+.+++|+|+........   ....+...   -.+..+|+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc-
Confidence            5688999999533      1111111  1225689999999987543222   22333221   134678999999743 


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894          134 CAVSTEDAKAFAERENTFFMETSALESMNV  163 (217)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (217)
                         ....+..+....+.|+.+++.  |+++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence               344566666778999887776  5544

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.33  E-value=2.9e-07  Score=69.90  Aligned_cols=94  Identities=11%  Similarity=0.014  Sum_probs=61.5

Q ss_pred             CCCch-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH
Q 027894           69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER  147 (217)
Q Consensus        69 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  147 (217)
                      .||+. .........+.++|+++.|+|+.++.+.....     +. ..  ++|.++|+||+|+.+..  ..+...++...
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADEK--TTKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence            46654 22344556778999999999999887643210     11 11  68999999999986521  11223344555


Q ss_pred             cCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894          148 ENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      .+.++ .+||+++.|++++++.+.+.
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence            67888 99999999999998776543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.33  E-value=3.5e-07  Score=76.69  Aligned_cols=63  Identities=16%  Similarity=0.100  Sum_probs=38.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc-ccceeEEEEEE--EE-CCeEEEEEEEeCCCch
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSI--RV-EDKIVKAQIWDTAGQE   73 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~   73 (217)
                      ...++|+|+|.+|+|||||+|+|++......... +.+.+.....+  .. ......+.++||||..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            4568999999999999999999999764211111 11111111111  11 1222468999999953

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.32  E-value=1.5e-06  Score=67.08  Aligned_cols=91  Identities=13%  Similarity=0.014  Sum_probs=55.6

Q ss_pred             EEEEEEeCCCchh--hhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCC
Q 027894           62 VKAQIWDTAGQER--YRA-ITS-----AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRH  132 (217)
Q Consensus        62 ~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~  132 (217)
                      +.+.++||||...  ... ...     .....+|.+++|+|+....   +.......+..    ..+ ..+|+||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            5689999999655  211 111     1245789999999986532   22222233322    244 678899999643


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894          133 LCAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                          .......+....+.|+.+++  .|+++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                33445667777888987776  4555543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.24  E-value=3.8e-07  Score=70.59  Aligned_cols=89  Identities=12%  Similarity=0.061  Sum_probs=61.3

Q ss_pred             hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCHHHHHHHHHHcCCcEE
Q 027894           77 AITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VSTEDAKAFAERENTFFM  153 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~  153 (217)
                      .+.+..+.++|.+++|+|+.+|. +...+++++.....   .++|.++|+||+|+.+...  ...+....+....+.+++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            33445689999999999998765 34455666555443   5688999999999965321  012233444455688999


Q ss_pred             EeccCCCCCHHHHHH
Q 027894          154 ETSALESMNVENAFT  168 (217)
Q Consensus       154 ~~Sa~~~~~v~~~~~  168 (217)
                      .+||.++.|++++++
T Consensus       155 ~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          155 LTSSKDQDSLADIIP  169 (307)
T ss_dssp             ECCHHHHTTCTTTGG
T ss_pred             EEecCCCCCHHHHHh
Confidence            999998888776554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.21  E-value=2.5e-06  Score=72.27  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFS   39 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~   39 (217)
                      ..|+|+|++|||||||++.+.+-..+
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCC
Confidence            34999999999999999999987533

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.99  E-value=8e-06  Score=63.87  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=74.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc---------------------ccceeEEEEEEEEC-------------
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS---------------------TIGVEFATRSIRVE-------------   58 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------   58 (217)
                      .--|+++|++||||||+++.+.+...+.....                     ..++.+........             
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~  208 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK  208 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence            45789999999999999999876321110000                     00110100000000             


Q ss_pred             CeEEEEEEEeCCCchhhhh----hhH--hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894           59 DKIVKAQIWDTAGQERYRA----ITS--AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~~----~~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      .....+.++|++|......    ...  ...-..|-.++++|.....   ++......+....   ...++++||.|...
T Consensus       209 ~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a  282 (328)
T 3e70_C          209 ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA  282 (328)
T ss_dssp             HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS
T ss_pred             hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc
Confidence            0113467899999532111    111  1122478889999976553   2223333333211   22367889999632


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894          133 LCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                          ............+.|+.+++  +|++++
T Consensus       283 ----~~G~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          283 ----RGGAALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             ----CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             ----chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence                22345566777788887777  555543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.99  E-value=2e-05  Score=62.15  Aligned_cols=84  Identities=11%  Similarity=0.035  Sum_probs=56.2

Q ss_pred             hhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHHHHHcCCcEEEeccCC
Q 027894           82 YYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAFAERENTFFMETSALE  159 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      .+.++|.+++|.+. +|. +...++.++.....   .++|.++|+||+|+.+.... ..++........+++++.+|+.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46889999988665 444 34455666554433   45778999999999653210 01122333445688999999999


Q ss_pred             CCCHHHHHHH
Q 027894          160 SMNVENAFTE  169 (217)
Q Consensus       160 ~~~v~~~~~~  169 (217)
                      +.|++++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999987654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.79  E-value=1.6e-06  Score=71.34  Aligned_cols=113  Identities=14%  Similarity=0.107  Sum_probs=63.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh--hhhhh--------Hh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--YRAIT--------SA   81 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~--------~~   81 (217)
                      ....|+++|.+||||||+.++|........ ..+..+..........+......+||..|.+.  ....+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999976532111 11111000000000011112346789988732  23332        45


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  129 (217)
                      ++....+.++|+|.++. +.+....|+..+...   ..+++.+-..++
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~~~  160 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESICV  160 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEECCC
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEECC
Confidence            56667888999999987 455566666655542   234444433333

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.76  E-value=3e-05  Score=63.02  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=22.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ....-|.|+|.+++|||+|+|.|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            45677999999999999999999864

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.53  E-value=5.3e-05  Score=53.93  Aligned_cols=23  Identities=30%  Similarity=0.733  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      +++++|++|+|||||++.+.+..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999887754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.52  E-value=0.0007  Score=54.91  Aligned_cols=83  Identities=17%  Similarity=0.030  Sum_probs=45.2

Q ss_pred             EEEEEEeCCCchhhh-hhhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcc
Q 027894           62 VKAQIWDTAGQERYR-AITS-----AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLC  134 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~-~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~  134 (217)
                      +.+.++||||..... ....     ..+..++.+++|+|+......   ......+..    ..+ .-+|+||.|.....
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~~  256 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDARG  256 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCccH
Confidence            578999999953321 1111     124468899999998754322   122222221    123 34689999975321


Q ss_pred             cCCHHHHHHHHHHcCCcEEEe
Q 027894          135 AVSTEDAKAFAERENTFFMET  155 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~  155 (217)
                          .....+....+.|+.++
T Consensus       257 ----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          257 ----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             ----THHHHHHHHHCCCEEEE
T ss_pred             ----HHHHHHHHHHCCCeEEE
Confidence                23334555556654333

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.46  E-value=6.6e-05  Score=53.43  Aligned_cols=22  Identities=27%  Similarity=0.635  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -++++|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.43  E-value=3.5e-05  Score=59.60  Aligned_cols=24  Identities=42%  Similarity=0.601  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -.++++|++|||||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            368999999999999999998754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.42  E-value=7.8e-05  Score=53.94  Aligned_cols=22  Identities=50%  Similarity=0.738  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .++|+|++|||||||++.+.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998763

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.31  E-value=0.00012  Score=52.90  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -|+++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4899999999999999999875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.28  E-value=0.00017  Score=52.02  Aligned_cols=25  Identities=36%  Similarity=0.513  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..--|+|+|++|+|||||++.|.+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3446899999999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.27  E-value=0.00014  Score=52.88  Aligned_cols=23  Identities=39%  Similarity=0.476  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47999999999999999988754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.27  E-value=0.00014  Score=53.44  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++|+|++|||||||++.+.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.27  E-value=0.00067  Score=54.82  Aligned_cols=85  Identities=18%  Similarity=0.041  Sum_probs=46.9

Q ss_pred             EEEEEEeCCCchhhhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERYRA-ITS-----AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      +.+.++||||...... ...     ...-.+|.+++|+|.....   +.......+....   ...-+|+||.|...   
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~l---~i~GVIlTKlD~~~---  251 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV---GVTGLVLTKLDGDA---  251 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHT---CCCEEEEESGGGCS---
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhcC---CceEEEEeCcCCcc---
Confidence            5689999999532211 111     1123588899999986432   2222222222111   12456889999643   


Q ss_pred             CCHHHHHHHHHHcCCcEEEec
Q 027894          136 VSTEDAKAFAERENTFFMETS  156 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~S  156 (217)
                       .......+....+.|+.++.
T Consensus       252 -~~g~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          252 -RGGAALSARHVTGKPIYFAG  271 (425)
T ss_dssp             -SCHHHHHHHHHHCCCEEEEE
T ss_pred             -cHHHHHHHHHHHCCCEEEEe
Confidence             12234556666788866655

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.26  E-value=0.00015  Score=53.28  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++|+|++|||||||++.+.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47999999999999999998744

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.25  E-value=0.00014  Score=51.94  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.|+++|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.24  E-value=0.00015  Score=51.19  Aligned_cols=20  Identities=50%  Similarity=0.690  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 027894           15 KVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~   34 (217)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.22  E-value=0.00065  Score=52.47  Aligned_cols=22  Identities=59%  Similarity=0.869  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|+|||||+|.+. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57999999999999999998 53

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.20  E-value=0.00019  Score=52.20  Aligned_cols=27  Identities=30%  Similarity=0.256  Sum_probs=22.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .....|+|+|++|||||||++.|.+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999887743

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.20  E-value=0.0002  Score=51.23  Aligned_cols=21  Identities=43%  Similarity=0.724  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+|+|++|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.18  E-value=0.0002  Score=52.11  Aligned_cols=23  Identities=35%  Similarity=0.536  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -|+++|++|||||||++.|....
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            58999999999999999998764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.18  E-value=0.00022  Score=49.69  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999998865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.17  E-value=0.00021  Score=53.20  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47999999999999999988754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.10  E-value=0.00027  Score=51.20  Aligned_cols=24  Identities=33%  Similarity=0.504  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .-|+|+|++|||||||++.|....
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            358999999999999999987643

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.09  E-value=0.0003  Score=49.41  Aligned_cols=23  Identities=26%  Similarity=0.544  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.09  E-value=0.00025  Score=52.33  Aligned_cols=23  Identities=43%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.08  E-value=0.0003  Score=50.25  Aligned_cols=21  Identities=33%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      -++++|++|||||||++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999976

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.08  E-value=0.00029  Score=50.92  Aligned_cols=24  Identities=38%  Similarity=0.566  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ..|+++|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.07  E-value=0.00031  Score=52.42  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.05  E-value=0.00033  Score=51.30  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.04  E-value=0.00032  Score=50.38  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58999999999999999887743

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.04  E-value=0.00033  Score=53.00  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.04  E-value=0.00033  Score=53.37  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999998754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.03  E-value=0.00035  Score=50.44  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.|+++|++|||||||++.|.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.03  E-value=0.00033  Score=52.14  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999988753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.03  E-value=0.00049  Score=48.40  Aligned_cols=23  Identities=39%  Similarity=0.478  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.|+++|++||||||+.+.|.+.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            46899999999999999988653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.02  E-value=0.00032  Score=50.99  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+++|++|||||||++.|.+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988774

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.02  E-value=0.00033  Score=55.30  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      .++++|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999998654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.00  E-value=0.00035  Score=52.95  Aligned_cols=23  Identities=43%  Similarity=0.577  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.00  E-value=0.00036  Score=52.61  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.00  E-value=0.00038  Score=52.63  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .++++|++|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998774

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.00  E-value=0.00039  Score=48.64  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .|+++|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.00  E-value=0.00038  Score=51.55  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.99  E-value=0.00033  Score=51.06  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .++++|++|+|||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999876

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.99  E-value=0.00039  Score=48.63  Aligned_cols=20  Identities=25%  Similarity=0.443  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCChHHHHHHH
Q 027894           14 YKVVLIGDSGVGKSNLLSRF   33 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l   33 (217)
                      .-|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999999

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.99  E-value=0.00038  Score=52.14  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.98  E-value=0.00039  Score=52.58  Aligned_cols=23  Identities=48%  Similarity=0.603  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999988754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.98  E-value=0.00044  Score=51.68  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999988754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.98  E-value=0.00043  Score=48.79  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.98  E-value=0.00044  Score=48.94  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-++++|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.98  E-value=0.00044  Score=51.67  Aligned_cols=21  Identities=29%  Similarity=0.654  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~   34 (217)
                      -.|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.97  E-value=0.0004  Score=51.80  Aligned_cols=23  Identities=39%  Similarity=0.508  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.96  E-value=0.00042  Score=52.19  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.96  E-value=0.00043  Score=51.93  Aligned_cols=23  Identities=39%  Similarity=0.631  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.95  E-value=0.00044  Score=51.91  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .++++|++|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999885

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.94  E-value=0.00044  Score=52.23  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57999999999999999998753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.93  E-value=0.00048  Score=52.25  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .++++|++|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999885

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.93  E-value=0.00049  Score=53.10  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6899999999999999998764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.92  E-value=0.00041  Score=49.11  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -.++++|++|+|||||++.+.+..
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999987754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.91  E-value=0.00048  Score=52.55  Aligned_cols=23  Identities=39%  Similarity=0.574  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.91  E-value=0.00048  Score=52.36  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999988754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.91  E-value=0.00054  Score=49.94  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998855

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.91  E-value=0.00058  Score=49.26  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.|+++|++||||||+.+.|...
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999988753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.90  E-value=0.00052  Score=49.56  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+|+|.+||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988664

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.90  E-value=0.00053  Score=49.54  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .+|+++|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999877

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.90  E-value=0.0005  Score=51.70  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.89  E-value=0.00059  Score=49.79  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999855

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.88  E-value=0.00055  Score=49.39  Aligned_cols=25  Identities=28%  Similarity=0.259  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .--|+++|++|||||||.+.|.+..
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999887643

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.88  E-value=0.00053  Score=53.20  Aligned_cols=28  Identities=18%  Similarity=0.137  Sum_probs=23.2

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .....-|+|+|++|||||||++.+.+..
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            3445678999999999999999887743

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.88  E-value=0.00053  Score=51.98  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.88  E-value=0.0006  Score=50.03  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..|+++|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.87  E-value=0.00061  Score=48.00  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-|+++|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.87  E-value=0.00065  Score=52.44  Aligned_cols=24  Identities=38%  Similarity=0.415  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      .++++|++|+|||||+|.+.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999988654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.86  E-value=0.00034  Score=51.70  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh-hC
Q 027894           15 KVVLIGDSGVGKSNLLSRFT-RN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~-~~   36 (217)
                      -|+++|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 54

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.85  E-value=0.003  Score=45.68  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .+++.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.85  E-value=0.00067  Score=48.81  Aligned_cols=22  Identities=27%  Similarity=0.655  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .|+++|.+||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999988763

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.85  E-value=0.00074  Score=48.87  Aligned_cols=22  Identities=41%  Similarity=0.622  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.83  E-value=0.0003  Score=49.67  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .|+|+|++|||||||++.+.+..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999987753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.83  E-value=0.00083  Score=48.43  Aligned_cols=27  Identities=22%  Similarity=0.438  Sum_probs=22.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ......|+++|.+||||||+.+.|...
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            344568999999999999999988653

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.83  E-value=0.0026  Score=43.21  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            45999999999999999988654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.82  E-value=0.0059  Score=47.86  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      +++.|++|+||||+++.+.+.-
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999987743

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.82  E-value=0.00071  Score=51.17  Aligned_cols=23  Identities=35%  Similarity=0.615  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.81  E-value=0.00093  Score=48.39  Aligned_cols=25  Identities=16%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ....|+++|++|||||||.+.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999998774

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.79  E-value=0.00075  Score=48.06  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .|+|.|.+||||||+.+.|...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988663

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.79  E-value=0.0012  Score=46.97  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=22.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .....|+++|.+||||||+.+.|...
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            34567999999999999999988664

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.79  E-value=0.00065  Score=49.84  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47999999999999999998743

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.76  E-value=0.00076  Score=50.35  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..-|+++|+.|||||||++.|.+.
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988763

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.75  E-value=0.0011  Score=47.03  Aligned_cols=22  Identities=32%  Similarity=0.623  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..|+++|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.75  E-value=0.00064  Score=46.77  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||+|++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999988754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.74  E-value=0.0007  Score=53.70  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .-+++|+|++|+|||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999988753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.74  E-value=0.00053  Score=53.02  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            58999999999999999887743

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.74  E-value=0.00095  Score=47.47  Aligned_cols=22  Identities=27%  Similarity=0.268  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.74  E-value=0.00095  Score=47.33  Aligned_cols=23  Identities=30%  Similarity=0.470  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+++|++||||||+.+.|...
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998653

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.73  E-value=0.00094  Score=46.91  Aligned_cols=23  Identities=17%  Similarity=0.341  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+++|++|||||||+.+|...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998774

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.72  E-value=0.00085  Score=48.93  Aligned_cols=21  Identities=19%  Similarity=0.396  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      +|+|+|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.71  E-value=0.00077  Score=51.72  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47999999999999999988753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.70  E-value=0.00084  Score=53.03  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .|+|+|++|||||||++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998774

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.70  E-value=0.001  Score=48.41  Aligned_cols=22  Identities=27%  Similarity=0.587  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ++|+++|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998865

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.69  E-value=0.0011  Score=47.20  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+++|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.68  E-value=0.00093  Score=51.63  Aligned_cols=22  Identities=32%  Similarity=0.665  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      --|+++|++|||||||++.+.+
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999998865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.68  E-value=0.0012  Score=46.87  Aligned_cols=24  Identities=17%  Similarity=0.426  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ...|+++|++||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999988764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.68  E-value=0.0015  Score=47.05  Aligned_cols=23  Identities=17%  Similarity=0.508  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ...|+|.|.+||||||+.+.|..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.67  E-value=0.00085  Score=52.96  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999998854

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.66  E-value=0.00099  Score=52.69  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            36899999999999999988754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.65  E-value=0.00099  Score=52.54  Aligned_cols=23  Identities=39%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999988754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.65  E-value=0.001  Score=51.36  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .--++++|++||||||+++.+.+.
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            346899999999999999988663

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.65  E-value=0.001  Score=46.81  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +|+++|++||||||+.+.|...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5999999999999999988653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.64  E-value=0.0013  Score=47.53  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|++.|.+||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999998763

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.63  E-value=0.0013  Score=45.86  Aligned_cols=21  Identities=38%  Similarity=0.453  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998866

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.63  E-value=0.0011  Score=50.51  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999874

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.62  E-value=0.0013  Score=46.46  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ...|+++|.+||||||+.+.|...
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            456999999999999999988753

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.62  E-value=0.0018  Score=50.33  Aligned_cols=27  Identities=22%  Similarity=0.210  Sum_probs=22.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ....+-|+++|++|||||||++.|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345577999999999999999988654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.62  E-value=0.0011  Score=52.47  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            36899999999999999998754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.62  E-value=0.0012  Score=48.23  Aligned_cols=22  Identities=32%  Similarity=0.591  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..|+++|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998865

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.62  E-value=0.0011  Score=52.77  Aligned_cols=23  Identities=48%  Similarity=0.625  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999998754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.62  E-value=0.0015  Score=49.99  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ...-|+++|++||||||+.+.|...
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.62  E-value=0.0017  Score=49.81  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=21.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .....|+|+|++|||||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999987755

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.61  E-value=0.0015  Score=48.78  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ...+|++.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.61  E-value=0.001  Score=52.05  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.61  E-value=0.0011  Score=52.42  Aligned_cols=23  Identities=39%  Similarity=0.470  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999988754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.59  E-value=0.0015  Score=46.51  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..|+++|.+||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.59  E-value=0.0011  Score=52.75  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .|+|+|++|||||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998774

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.58  E-value=0.0011  Score=51.34  Aligned_cols=25  Identities=24%  Similarity=0.308  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ...-|+|+|++|||||||++.|.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999988774

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.58  E-value=0.001  Score=52.69  Aligned_cols=23  Identities=26%  Similarity=0.601  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            78999999999999999998753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.57  E-value=0.0012  Score=47.70  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ...-|+++|++|||||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998875

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.57  E-value=0.0058  Score=49.58  Aligned_cols=63  Identities=25%  Similarity=0.333  Sum_probs=39.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhh------------------CcCCCC---CCcccceeEEEEEEEE---CCeEEEEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTR------------------NEFSLE---SKSTIGVEFATRSIRV---EDKIVKAQ   65 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~------------------~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~   65 (217)
                      .....=|.|+|..++|||+|+|.|+.                  ..|...   ..-|.|+-.....+..   ++....+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            34677788999999999999996542                  122211   1123343333222222   45678899


Q ss_pred             EEeCCCc
Q 027894           66 IWDTAGQ   72 (217)
Q Consensus        66 l~Dt~G~   72 (217)
                      ++||.|.
T Consensus       144 llDTEG~  150 (457)
T 4ido_A          144 LMDTQGT  150 (457)
T ss_dssp             EEEECCB
T ss_pred             EEeccCC
Confidence            9999994

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.57  E-value=0.0012  Score=52.44  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            36899999999999999998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.57  E-value=0.0012  Score=52.35  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            36899999999999999988754

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.56  E-value=0.0014  Score=48.15  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .|+|+|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.56  E-value=0.0013  Score=49.24  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=19.9

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ++++|++|+|||||++.+.+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999998743

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.54  E-value=0.0014  Score=48.28  Aligned_cols=22  Identities=36%  Similarity=0.673  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..|+|+|.+||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.54  E-value=0.0011  Score=48.89  Aligned_cols=26  Identities=27%  Similarity=0.572  Sum_probs=22.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ....-|+|.|+.|||||||++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34467999999999999999998775

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.53  E-value=0.0019  Score=46.73  Aligned_cols=24  Identities=21%  Similarity=0.069  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ...|++.|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999988653

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.53  E-value=0.0016  Score=45.93  Aligned_cols=24  Identities=33%  Similarity=0.628  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -.+++.|++|+|||+|++.+....
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999887653

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.53  E-value=0.0014  Score=49.19  Aligned_cols=21  Identities=14%  Similarity=0.352  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998865

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.52  E-value=0.0017  Score=46.74  Aligned_cols=23  Identities=17%  Similarity=0.173  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|++.|.+||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999775

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.51  E-value=0.00052  Score=49.86  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -|+|+|.+||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4899999999999999998653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.50  E-value=0.0014  Score=52.95  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .|+|+|++|||||||++.+++..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            48999999999999999998754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.47  E-value=0.0018  Score=48.61  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=22.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ......|+++|++||||||+.+.|...
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            344578999999999999999998664

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.46  E-value=0.0018  Score=48.59  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~   34 (217)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999987

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.46  E-value=0.001  Score=52.39  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            46899999999999999998754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.46  E-value=0.0018  Score=46.09  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.45  E-value=0.0024  Score=45.35  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..|++.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.45  E-value=0.0018  Score=46.26  Aligned_cols=22  Identities=18%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..|+++|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.44  E-value=0.002  Score=48.21  Aligned_cols=26  Identities=15%  Similarity=0.272  Sum_probs=21.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ....+.|+|.|++||||||+.+.|..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            33457899999999999999998866

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.43  E-value=0.0017  Score=51.35  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .--|+++|++||||||+++.+.+.
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhh
Confidence            346899999999999999988663

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.43  E-value=0.0019  Score=45.13  Aligned_cols=21  Identities=19%  Similarity=0.529  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.42  E-value=0.0016  Score=54.05  Aligned_cols=23  Identities=17%  Similarity=0.381  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .|+|+|++|||||||++.+++--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998744

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.42  E-value=0.0018  Score=47.31  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.41  E-value=0.0016  Score=47.64  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+|+|++||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.40  E-value=0.002  Score=45.48  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+++|.+||||||+.+.|...
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999988763

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.40  E-value=0.002  Score=46.14  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+++|.+||||||+.+.|...
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.40  E-value=0.0016  Score=52.02  Aligned_cols=22  Identities=55%  Similarity=0.795  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .++++|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4799999999999999998774

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.39  E-value=0.024  Score=44.06  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -.|++.|++|+|||+|++.+....
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHHHc
Confidence            468999999999999999998743

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.39  E-value=0.0019  Score=49.11  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=20.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      |+++|++|+|||||++.+.+..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHc
Confidence            8999999999999999998743

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.39  E-value=0.0018  Score=50.66  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+..
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            48999999999999999988753

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.39  E-value=0.0023  Score=45.97  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ...|+|+|.+||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            367999999999999999998775

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.38  E-value=0.0022  Score=47.36  Aligned_cols=24  Identities=29%  Similarity=0.565  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ...|+|+|.+||||||+.+.|...
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988653

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.38  E-value=0.002  Score=48.58  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+++|.+||||||+.+.|...
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            46999999999999999998763

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.37  E-value=0.0015  Score=50.84  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      --++|+|+.|||||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            356899999999999999999764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.36  E-value=0.002  Score=47.20  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|+|||||++.+....
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            47899999999999999988543

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.0056  Score=44.93  Aligned_cols=26  Identities=12%  Similarity=-0.037  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      +.+-|++.|.++.|||+|++++.+..
T Consensus        28 nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           28 NKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             CceEEEecCcccccHHHHHHHHhccc
Confidence            34555555999999999999998874

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.35  E-value=0.0019  Score=52.99  Aligned_cols=23  Identities=26%  Similarity=0.728  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .--|+|+|++|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999998865

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.35  E-value=0.068  Score=41.25  Aligned_cols=22  Identities=14%  Similarity=0.326  Sum_probs=17.3

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      +++.|++|+|||++++.+....
T Consensus        51 ~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHHT
T ss_pred             EEeeCcCCCCHHHHHHHHHHHh
Confidence            4555669999999999987643

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.34  E-value=0.002  Score=46.76  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|++.|.+||||||+.+.|...
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.33  E-value=0.0022  Score=45.37  Aligned_cols=21  Identities=43%  Similarity=0.684  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .|+++|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.33  E-value=0.003  Score=45.33  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=22.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ...+.|++.|.+||||||+.+.|...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            45788999999999999999988764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.32  E-value=0.00099  Score=52.57  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999988754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.31  E-value=0.0021  Score=45.36  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.31  E-value=0.0022  Score=50.53  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      +++++|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.31  E-value=0.0024  Score=46.79  Aligned_cols=21  Identities=19%  Similarity=0.561  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+++|+|||||+|....|...
T Consensus        32 I~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999888653

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.0018  Score=53.01  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.++|+|++|||||||++.+.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999988774

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.30  E-value=0.0016  Score=46.00  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=16.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|++.|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999998653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.29  E-value=0.0028  Score=44.15  Aligned_cols=23  Identities=39%  Similarity=0.525  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .-.|++.|.+||||||+.+.|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998865

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.28  E-value=0.02  Score=44.56  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|++.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            45899999999999999998664

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.28  E-value=0.0029  Score=46.10  Aligned_cols=22  Identities=41%  Similarity=0.664  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      +.|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.24  E-value=0.002  Score=45.30  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -.+++.|++|+|||+|++.+....
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            467999999999999999887653

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.24  E-value=0.0026  Score=47.67  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.|+++|++|+|||+|++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35999999999999999998764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.21  E-value=0.0028  Score=46.07  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ...|+++|.+||||||+.+.|...
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.21  E-value=0.0025  Score=47.77  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      -.|+++|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.19  E-value=0.0025  Score=48.87  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++|+|++|+|||||++.+.+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999987754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.19  E-value=0.0029  Score=45.47  Aligned_cols=24  Identities=33%  Similarity=0.445  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -.+++.|++|+|||+|++.+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999887643

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.17  E-value=0.0032  Score=46.27  Aligned_cols=24  Identities=17%  Similarity=0.301  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-.+++.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.15  E-value=0.0031  Score=46.58  Aligned_cols=26  Identities=15%  Similarity=0.262  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ...-|++.|++||||||+++.|....
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34679999999999999999987753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.14  E-value=0.0031  Score=45.79  Aligned_cols=21  Identities=19%  Similarity=0.153  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.13  E-value=0.0035  Score=46.41  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .+.|++.|++||||||+.+.|..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.12  E-value=0.0032  Score=46.48  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.09  E-value=0.0033  Score=43.11  Aligned_cols=19  Identities=42%  Similarity=0.718  Sum_probs=17.0

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 027894           16 VVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~   34 (217)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3799999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.07  E-value=0.0046  Score=51.63  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998854

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.07  E-value=0.013  Score=41.95  Aligned_cols=85  Identities=11%  Similarity=-0.096  Sum_probs=55.3

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccC--CCCCcEEEEEeCCCCCCcccCCHH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHT--DSNIVIMLVGNKADLRHLCAVSTE  139 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~~~~~~  139 (217)
                      +.+.++|+|+..  .......+..+|.+++++..+...  ..+..++..+....  ..+.++.+|+|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            578999999864  233445666799999999876554  66666677776543  245677899999995421   123


Q ss_pred             HHHHHHHHcCCcEE
Q 027894          140 DAKAFAERENTFFM  153 (217)
Q Consensus       140 ~~~~~~~~~~~~~~  153 (217)
                      +..++.+..+.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            34455555555443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.05  E-value=0.0043  Score=51.76  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|+.|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999998854

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.04  E-value=0.0035  Score=51.46  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      -++++|++|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999998866

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.03  E-value=0.0035  Score=50.90  Aligned_cols=23  Identities=43%  Similarity=0.590  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.02  E-value=0.005  Score=47.24  Aligned_cols=27  Identities=22%  Similarity=0.145  Sum_probs=21.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ....-+++.|+||+|||+|.+.+....
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            344567888999999999999987643

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.01  E-value=0.0043  Score=45.87  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=21.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ......|+++|++||||||+.+.|..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34456899999999999999998865

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.01  E-value=0.0038  Score=47.87  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.01  E-value=0.0037  Score=49.74  Aligned_cols=22  Identities=18%  Similarity=0.223  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      -.|+++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999886

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.005  Score=52.09  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      .++++|++|+|||||++.+.+...
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            579999999999999999988543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.96  E-value=0.0043  Score=47.29  Aligned_cols=23  Identities=43%  Similarity=0.629  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .+.|+|.|.+||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998863

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.95  E-value=0.0038  Score=52.65  Aligned_cols=23  Identities=48%  Similarity=0.599  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999987743

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.92  E-value=0.0044  Score=45.31  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -+++.|++|+|||+|++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.91  E-value=0.0054  Score=41.70  Aligned_cols=25  Identities=20%  Similarity=0.167  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ...|++.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3568999999999999999987654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.89  E-value=0.0043  Score=52.29  Aligned_cols=23  Identities=48%  Similarity=0.667  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999988753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.87  E-value=0.0046  Score=46.93  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            345999999999999999999764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.86  E-value=0.0046  Score=47.27  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-.|++.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357899999999999999998774

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.86  E-value=0.005  Score=46.03  Aligned_cols=24  Identities=25%  Similarity=0.392  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-.|++.|++|+|||+|++.+...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999998764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.82  E-value=0.0066  Score=51.39  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57999999999999999998854

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.81  E-value=0.0043  Score=44.92  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .+++.|+||+|||+++..+...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999998887663

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.81  E-value=0.0047  Score=47.48  Aligned_cols=85  Identities=16%  Similarity=0.125  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCchhhhh--h--hHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERYRA--I--TSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~--~--~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      ..+.++||+|......  +  ....+.  ..+.+++|+|.+..  ..++..+...+..   -+ ..-+|+||.|...   
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~---  253 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETT---  253 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCS---
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCccc---
Confidence            4689999999643321  1  112222  36778999987643  3344443333321   11 2345679999753   


Q ss_pred             CCHHHHHHHHHHcCCcEEEec
Q 027894          136 VSTEDAKAFAERENTFFMETS  156 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~S  156 (217)
                       ....+...+...+.|+.+++
T Consensus       254 -~~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          254 -SLGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             -CCHHHHHHHHTCSCCCSEEC
T ss_pred             -chhHHHHHHHHHCcCEEEEE
Confidence             22356667777888765544

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.81  E-value=0.006  Score=44.99  Aligned_cols=25  Identities=20%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ...++++++|++||||||+.+.|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            4568999999999999999998865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.80  E-value=0.0059  Score=43.94  Aligned_cols=24  Identities=38%  Similarity=0.577  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ..|+|+|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.79  E-value=0.0051  Score=47.30  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.|++.|++|+|||+|++.+.+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            45899999999999999998774

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.79  E-value=0.0044  Score=52.45  Aligned_cols=23  Identities=35%  Similarity=0.612  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999887743

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.79  E-value=0.0037  Score=52.64  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57999999999999999887643

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.77  E-value=0.005  Score=46.77  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -++|+|++|+|||||+..+...
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999988763

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.75  E-value=0.0054  Score=47.58  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -.+++.|++|+|||+|++.+.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            358999999999999999987643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.75  E-value=0.0058  Score=47.21  Aligned_cols=86  Identities=19%  Similarity=0.090  Sum_probs=48.0

Q ss_pred             EEEEEEeCCCchhhhh--------hhHh----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894           62 VKAQIWDTAGQERYRA--------ITSA----YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~--------~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  129 (217)
                      ..+.++||||......        ....    ....++.+++|+|....  .+.+... ..+...  .+. .-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a-~~~~~~--~~i-~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQA-KIFKEA--VNV-TGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHH-HHHHHH--SCC-CEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHH-HHHHhc--CCC-CEEEEeCCC
Confidence            3589999999522111        1111    11347889999998643  2222222 222221  122 345689999


Q ss_pred             CCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894          130 LRHLCAVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ...    ....+..+....+.|+.+++.
T Consensus       261 ~~~----~gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTA----KGGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred             Ccc----chHHHHHHHHHHCCCEEEEeC
Confidence            643    223466777778888777655

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.74  E-value=0.0076  Score=44.28  Aligned_cols=31  Identities=16%  Similarity=0.093  Sum_probs=22.0

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894            6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ++.......-|++.|..||||||+++.|...
T Consensus        14 ~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~   44 (223)
T 3ld9_A           14 AQTQGPGSMFITFEGIDGSGKTTQSHLLAEY   44 (223)
T ss_dssp             -----CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3344445677999999999999999988653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.71  E-value=0.0072  Score=50.43  Aligned_cols=24  Identities=17%  Similarity=0.373  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      .++++|++|+|||||++.+.+-..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999988643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.71  E-value=0.008  Score=50.17  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      .++++|+.|+|||||++.+.+...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999988643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.70  E-value=0.0064  Score=43.73  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .|++.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.70  E-value=0.0073  Score=51.13  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      .++++|+.|+|||||++.+.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            479999999999999999988643

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.69  E-value=0.0073  Score=46.36  Aligned_cols=25  Identities=16%  Similarity=0.337  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ....+++.|++|+|||+|++.+...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999866553

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.68  E-value=0.0061  Score=49.19  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..-|+++|.+||||||+.++|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            356889999999999999998764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.67  E-value=0.0049  Score=52.03  Aligned_cols=22  Identities=36%  Similarity=0.655  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.64  E-value=0.0064  Score=48.18  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=18.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~   34 (217)
                      .+ .+|+|+.|+|||||++.+.
T Consensus        24 g~-~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GI-TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EE-EEEECCTTSSHHHHHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHH
Confidence            45 4699999999999999876

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.54  E-value=0.0067  Score=47.85  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.++|.|++|+|||||++.+.+.
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.53  E-value=0.011  Score=44.63  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=22.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999998774

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.51  E-value=0.0079  Score=46.04  Aligned_cols=23  Identities=30%  Similarity=0.702  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..+++.|++|+|||+|++.+...
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.0097  Score=50.37  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      ++++|+.|+|||||++.+.+-..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            79999999999999999988654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.47  E-value=0.0074  Score=45.38  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ....|+|.|..||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999988764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.47  E-value=0.0084  Score=46.55  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988663

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.46  E-value=0.0081  Score=47.53  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++|.|++|+|||||++.+.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999988754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.46  E-value=0.0084  Score=46.90  Aligned_cols=23  Identities=22%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46899999999999999888653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.45  E-value=0.013  Score=45.04  Aligned_cols=24  Identities=25%  Similarity=0.484  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -.++++|++|+|||++++.+....
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            478999999999999999887643

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.42  E-value=0.0086  Score=48.39  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      --|++.|+||+|||+|++++.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999774

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.41  E-value=0.0084  Score=46.86  Aligned_cols=23  Identities=22%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .+++.|++|+||||+++.+.+.-
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999987754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.39  E-value=0.011  Score=46.46  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..+|+++|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            46799999999999999987654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.39  E-value=0.0086  Score=44.21  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -++++|++|+|||||+..+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999998777553

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.38  E-value=0.0082  Score=47.26  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -+.|+|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998753

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.38  E-value=0.081  Score=38.20  Aligned_cols=85  Identities=9%  Similarity=0.012  Sum_probs=54.8

Q ss_pred             EEEEEEeCCCc-hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHH
Q 027894           62 VKAQIWDTAGQ-ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTED  140 (217)
Q Consensus        62 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  140 (217)
                      +.+.++|+|+. ...  .....+..+|.+++++.. +..++..+..++..+....  +.++.+|+|+.|....  ....+
T Consensus        68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred             CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence            56899999886 332  234466789999988875 4555666777777766532  4568899999986420  11344


Q ss_pred             HHHHHHHcCCcEE
Q 027894          141 AKAFAERENTFFM  153 (217)
Q Consensus       141 ~~~~~~~~~~~~~  153 (217)
                      ..+.....+.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            4555555665544

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.36  E-value=0.01  Score=45.86  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -|+|+|++|||||+|...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5789999999999999998764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.35  E-value=0.0094  Score=48.24  Aligned_cols=24  Identities=21%  Similarity=0.301  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .--|++.|+||+|||+|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999774

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.32  E-value=0.0063  Score=46.62  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=16.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      +-|+|.|++||||||+.+.|..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.30  E-value=0.011  Score=46.21  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -|+|+|++|||||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.29  E-value=0.011  Score=52.51  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      .++++|+.|+|||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            479999999999999999987543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.28  E-value=0.011  Score=45.92  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-.|++.|++|+|||+|++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.01  Score=48.03  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .--|++.|+||+|||+|++++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999999774

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.25  E-value=0.012  Score=42.60  Aligned_cols=19  Identities=42%  Similarity=0.718  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 027894           16 VVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~   34 (217)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4789999999999999864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.23  E-value=0.012  Score=45.46  Aligned_cols=24  Identities=38%  Similarity=0.578  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-.+++.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.22  E-value=0.0048  Score=46.42  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .|++.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3889999999999999998764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.21  E-value=0.013  Score=41.15  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .-|++.|++|+||||+.-.|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            358999999999999999998854

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.19  E-value=0.14  Score=37.66  Aligned_cols=87  Identities=10%  Similarity=0.015  Sum_probs=58.5

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  141 (217)
                      +.+.++|+|+...  ......+..+|.+++++.. +..++..+..++..+.........+.+|+|+.+...  ....+  
T Consensus       119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~--  191 (245)
T 3ea0_A          119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD--  191 (245)
T ss_dssp             CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH--
T ss_pred             CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH--
Confidence            5789999988532  2344567789999999885 466677788888888765434456788999998643  23333  


Q ss_pred             HHHHHHcCCcEEEec
Q 027894          142 KAFAERENTFFMETS  156 (217)
Q Consensus       142 ~~~~~~~~~~~~~~S  156 (217)
                       .+.+..+.+++.+-
T Consensus       192 -~~~~~~~~~v~~~i  205 (245)
T 3ea0_A          192 -EIEKVIGRPISKRI  205 (245)
T ss_dssp             -HHHHHHTSCEEEEE
T ss_pred             -HHHHHhCCCeEEEC
Confidence             33344677766543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.18  E-value=0.011  Score=46.12  Aligned_cols=21  Identities=24%  Similarity=0.583  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988765

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.18  E-value=0.0095  Score=47.03  Aligned_cols=24  Identities=25%  Similarity=0.355  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-.+++.|++|+|||+|++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.18  E-value=0.012  Score=41.61  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.17  E-value=0.012  Score=45.36  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-|+|+|++|||||+|...|...
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            45889999999999999998654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.15  E-value=0.013  Score=42.75  Aligned_cols=24  Identities=29%  Similarity=0.267  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..-|++.|.+||||||+++.|...
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~   29 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAER   29 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            356899999999999999988653

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.13  E-value=0.012  Score=43.63  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|++.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999988764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.13  E-value=0.0067  Score=53.90  Aligned_cols=23  Identities=35%  Similarity=0.653  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++|+|+.|+|||||++.+.+..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998854

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.12  E-value=0.012  Score=47.06  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      --|++.|+||+|||.|.+++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            45899999999999999999774

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.10  E-value=0.012  Score=47.88  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.+++.|++|+|||+|++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.09  E-value=0.011  Score=46.49  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -.+++.|++|+|||+|++.+....
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999987643

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.08  E-value=0.007  Score=50.60  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ....|+++|.+|||||||++.|.+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            34579999999999999999987754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.06  E-value=0.0078  Score=55.55  Aligned_cols=22  Identities=36%  Similarity=0.641  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +|++||++|||||||++.|.+-
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            7899999999999999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	7e-56
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-55
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	8e-55
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-52
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-52
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	6e-52
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-50
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	5e-50
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-47
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-46
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	8e-46
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	8e-45
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-44
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	7e-42
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-41
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-40
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-38
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	8e-38
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-37
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	5e-37
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-36
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-35
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	8e-35
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-34
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	5e-34
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-33
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-33
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-33
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	5e-33
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-31
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-31
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	7e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	8e-31
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	3e-30
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	9e-30
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-29
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-28
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-28
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-27
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	3e-27
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-26
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	9e-26
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-24
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-24
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-24
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-23
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-23
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-22
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-21
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	7e-21
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-20
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	7e-20
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-19
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	7e-18
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	6e-17
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-16
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	9e-11
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	5e-09
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	5e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	3e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-05
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-05
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	2e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	2e-04
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	3e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	4e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	8e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	9e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.001
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	0.003

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (439), Expect = 7e-56
 Identities = 136/174 (78%), Positives = 157/174 (90%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQERYR ITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGNK+D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183
           LRHL AV T++A+AFAE+ N  F+ETSAL+S NVE AF  +LT+IY +VS+K +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  172 bits (437), Expect = 3e-55
 Identities = 87/195 (44%), Positives = 130/195 (66%), Gaps = 2/195 (1%)

Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           +YDYL+K++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++ ++ K VK QIWD
Sbjct: 2   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGNK 
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 121

Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGD 188
           DL+    V  + AK FA+     F+ETSAL+S NVE+AF  +  QI   +S++ L+    
Sbjct: 122 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQ 181

Query: 189 PAALPKGQTINVGGK 203
                    +N+ G+
Sbjct: 182 KK--EDKGNVNLKGQ 194

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  170 bits (432), Expect = 8e-55
 Identities = 78/168 (46%), Positives = 114/168 (67%)

Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
           + YDYL+K++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I ++ K +K QIW
Sbjct: 1   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
           DTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ +  H  +++  M++GNK
Sbjct: 61  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 120

Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
            D+     VS E  +  A      FMETSA  ++NVENAF  +   I 
Sbjct: 121 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (416), Expect = 2e-52
 Identities = 87/166 (52%), Positives = 113/166 (68%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           Y Y++K ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I V  + +K QIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R  T+ N VI+L+GNKAD
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           L     V+ E+AK FAE     F+E SA    NVE+AF E   +IY
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (415), Expect = 3e-52
 Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 1/169 (0%)

Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQI 66
           + YD  +KV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + + V+   VK Q+
Sbjct: 1   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R++T AYYR A   LL+YDVT   +F+N++ WL E+  +   ++ +ML+GN
Sbjct: 61  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 120

Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           K D  H   V  ED +  A+     FMETSA   +NV+ AFT +  ++ 
Sbjct: 121 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (413), Expect = 6e-52
 Identities = 72/166 (43%), Positives = 113/166 (68%)

Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           DYD+L+K+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ +  + VK QIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +  + ++ +LVGNK 
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 120

Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL     VS + A+ F+E ++ +++ETSA ES NVE  F ++  ++
Sbjct: 121 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  159 bits (403), Expect = 2e-50
 Identities = 67/167 (40%), Positives = 110/167 (65%)

Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
           ++DY++K+++IG+S VGK++ L R+  + F+    ST+G++F  ++I   DK +K QIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
           TAGQERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LVGNK 
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120

Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           D+     VS+E  +  A+     F E SA +++NV+  F  ++  I 
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  158 bits (400), Expect = 5e-50
 Identities = 71/163 (43%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++ +  K VK QIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132
           ER+R IT+AYYRGA+G +LVYD+T   TF N+++W K +  H +    ++LVGNK+D+  
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
              V+ +  +A A+     F+E+SA    NV   F  +   I 
Sbjct: 122 RV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 163

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 1e-47
 Identities = 86/169 (50%), Positives = 113/169 (66%)

Query: 12  YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
           YL+K ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++ K +K QIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
           QE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H+ SN+VIML+GNK+DL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
               V  E+ +AFA      FMETSA  + NVE AF     +IY  + +
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (377), Expect = 2e-46
 Identities = 67/178 (37%), Positives = 106/178 (59%), Gaps = 11/178 (6%)

Query: 9   DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK-------- 60
           DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +    +        
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 61  --IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN 118
              V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +    
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 119 -IVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
              I+L+GNKADL     V+   A+  A++    + ETSA    NVE A   +L  I 
Sbjct: 121 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 178

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (373), Expect = 8e-46
 Identities = 81/167 (48%), Positives = 108/167 (64%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           YD+L+K ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I V  K VK QIWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
           AGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GNK D
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 121

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
           L     V+  +A  FA+     F+ETSAL   NVE AF +   +I +
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (366), Expect = 8e-45
 Identities = 70/170 (41%), Positives = 101/170 (59%)

Query: 7   DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
           DED     K+++IG+SGVGKS+LL RFT + F  E  +TIGV+F  ++I V+    K  I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
           WDTAGQER+R +T +YYRGA G +LVYDVTR  TF  ++ WL EL  +   N ++ ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
               +    V   +   FA + +  F+E SA     V+ AF E++ +I  
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (360), Expect = 5e-44
 Identities = 60/161 (37%), Positives = 105/161 (65%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+V +G+  VGK++L++RF  + F    ++TIG++F ++++ +ED+ ++ Q+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             VS E+ +  A+  N  F+ETSA    NV+  F  V   +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 7e-42
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 2/164 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YKVV++G  GVGKS L  +F    F  +   TI  +F  + I V+      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKADLRH 132
           ++ ++   Y +   G +LVY +    +F++++    ++        + ++LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
              VS+ + +A AE     FMETSA     V+  F E++ Q+ +
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (342), Expect = 3e-41
 Identities = 63/164 (38%), Positives = 102/164 (62%)

Query: 12  YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
           Y +KVVL+G+  VGK++L+ R+  N+F+ +  +T+G  F T+ + +  K V   IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
           QER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK DL 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
               VS ++A+++AE        TSA ++  +E  F ++  ++ 
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 3e-40
 Identities = 73/162 (45%), Positives = 108/162 (66%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++ ++D  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
            AV  ++A+++A+  +  FMETSA  SMNV   F  +  ++ 
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 4e-38
 Identities = 65/169 (38%), Positives = 103/169 (60%), Gaps = 6/169 (3%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
             L+KV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + + V+   V  QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS----NIVIMLVGN 126
           GQER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 127 KADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
           K D+     VSTE+A+A+      + + ETSA ++ NV  AF E + ++
Sbjct: 124 KIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 8e-38
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 14/184 (7%)

Query: 6   ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ 65
           A      + K V++GD  VGK+ LL  +  + F  E   T+  +    S+ V  K     
Sbjct: 2   AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLG 60

Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVG 125
           ++DTAGQE Y  +    Y      L+ + V    +F+NV+            N+  +L+G
Sbjct: 61  LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG 120

Query: 126 NKADLR------------HLCAVSTEDAKAFAERENT-FFMETSALESMNVENAFTEVLT 172
            + DLR                +  E  +  A+      ++E SAL    ++  F E + 
Sbjct: 121 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180

Query: 173 QIYH 176
            I  
Sbjct: 181 AILT 184

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  126 bits (316), Expect = 2e-37
 Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 2/164 (1%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L+KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++ + V+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
               VS E+AK  A++ N  ++ETSA    NV+  F +++ +I 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 5e-37
 Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 14/181 (7%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+  +    ++ +  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--- 130
            Y  +    Y      L+ + V    +FENV+        H       +LVG + DL   
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 131 ---------RHLCAVSTEDAKAFAEREN-TFFMETSALESMNVENAFTEVLTQIYHVVSR 180
                         ++ E A+  A       ++E SAL    ++N F E +         
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 181 K 181
           K
Sbjct: 183 K 183

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (310), Expect = 1e-36
 Identities = 66/161 (40%), Positives = 104/161 (64%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            KV L+GD+GVGKS+++ RF  + F      TIG  F T++++ ++++ K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           R+RA+   YYRG+  A++VYD+T+  TF  ++ W++ELR H   +IV+ + GNK DL  +
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             V   DAK +A+  +  F+ETSA  ++N+   F E+  +I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 3e-35
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +F +  F  +   TI  +   + + V+ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLK-ELRGHTDSNIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   +  LR     ++ ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 133 LCAVSTEDAKAFAER-ENTFFMETSALESMNVENAFTEVLTQIY 175
              V  E  +  A +  N  F+E+SA   +NV   F +++ QI 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 8e-35
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++G  GVGKS L  +  +N F  E   TI   +  + +  + +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   D  ++ ++LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
              V +  A+  A      ++ETSA     VE+AF  ++ +I 
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 3e-34
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 2/166 (1%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
              +K+V++G  GVGKS L  +F ++ F          +  T+   V+    +  I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSVDGIPARLDILDTA 62

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWL-KELRGHTDSNIVIMLVGNKAD 129
           GQE + A+   Y R   G LLV+ +    +F  V +   + LR     +  ++LVGNKAD
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           L     V   +A AF    +  + E SA   +NV+ AF +++  + 
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  117 bits (294), Expect = 5e-34
 Identities = 63/167 (37%), Positives = 102/167 (61%), Gaps = 4/167 (2%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ + V+D++V  QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRGHTDSNIVIMLVGNKA 128
           ER++++  A+YRGA   +LV+DVT   TF+ ++ W    L +       N   +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           DL +    +         + N  + ETSA E++NVE AF  +     
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  116 bits (290), Expect = 2e-33
 Identities = 64/163 (39%), Positives = 96/163 (58%), Gaps = 3/163 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+VL+G++ VGKS+++ RF  N+F+   + TIG  F T+ + + +  VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           + ++   YYR A  AL+VYDVT+  +F     W+KEL      +I+I LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 135 AV---STEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                + E+ +  AE +   F ETSA    NV + F  +  +I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 2e-33
 Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 14/176 (7%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ V+ K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
            Y  +    Y     +L+ + +    +FENV         H   N  I+LVG K DLR  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 134 CAVSTE------------DAKAFAERENT-FFMETSALESMNVENAFTEVLTQIYH 176
                +               A A+      ++E SAL    ++  F E +  +  
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 3e-33
 Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 2/163 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           Y++V++G  GVGKS L  +F ++ F  +   TI  +  T+   ++D+  +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
            + A+   Y R   G LLV+ VT   +FE + ++ ++ LR        ++L+GNKADL H
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
              V+ E+ +  A +    +ME SA   MNV+ AF E++  I 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (287), Expect = 5e-33
 Identities = 61/163 (37%), Positives = 98/163 (60%), Gaps = 5/163 (3%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           ++K+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ ++ + +K Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 73  ERY-RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN-IVIMLVGNKADL 130
           ER+ +++   YYR     + VYD+T   +F ++  W++E + H  +N I  +LVGNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESM---NVENAFTEV 170
           R    V T+ A+ FA+  +    ETSA       +VE  F  +
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (274), Expect = 4e-31
 Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YK+V++GD GVGKS L  +F +  F  +   TI   +  +   ++++     + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLK-ELRGHTDSNIVIMLVGNKADLRH 132
            + A+   Y R   G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL H
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 133 LCAVSTEDAKAFAERENTFFMETSALES-MNVENAFTEVLTQIY 175
           L  V+ +  K  A + N  ++ETSA +  +NV+  F +++  I 
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  109 bits (273), Expect = 6e-31
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 9/165 (5%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    +    +  T+G    T       K VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETV----TYKNVKFNVWDVGGQD 67

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL-- 130
           + R +   YY G  G + V D       +   + L  +    +  + +I++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 131 -RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                 +  +         N +   + A     +    T + +  
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 7e-31
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           Y+V + G  GVGKS+L+ RF +  F      T+   +       +  I   QI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISC-DKSICTLQITDTTGSH 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR--GHTDSNIVIMLVGNKADLR 131
           ++ A+           +LVY +T   + E ++   +++        +I IMLVGNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               V + +A+A A      FMETSA  + NV+  F E+L   
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (271), Expect = 8e-31
 Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 1/161 (0%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++G+  VGKS+++ R+ +  F+ + K TIGV+F  R I+V D+ V+  +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           + AIT AYYRGA   +LV+  T   +FE +  W +E       +I   LV NK DL    
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLDDS 122

Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
            +  E+A+  A+R    F  TS  E +NV   F  +  +  
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (268), Expect = 3e-30
 Identities = 60/171 (35%), Positives = 100/171 (58%), Gaps = 7/171 (4%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV-KAQIWDTAG 71
           + KV+++GDSGVGK++L+ R+  +++S + K+TIG +F T+ + V+   V   Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN----IVIMLVGNK 127
           QER++++  A+YRGA   +LVYDVT   +FEN++ W  E   H + N       +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 128 ADLRHLCAVSTEDAKAFAERE--NTFFMETSALESMNVENAFTEVLTQIYH 176
            D      + +E +     +   +     TSA  ++NV+ AF E+      
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (266), Expect = 9e-30
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 14/173 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F ++ F      T+  E  T S  ++ + ++  +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
           Y  +    Y  +   L+ +D++R  T ++V +  K        N  ++LVG K+DLR   
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 135 ------------AVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVLTQI 174
                        VS +     A +     ++E SAL+S N       V T  
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 175

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 1e-29
 Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 14/174 (8%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            K+V++GD   GK+ LL   ++++F      T+  E     I V+ K V+  +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD---- 129
            Y  +    Y      L+ + +    + EN+         H   N+ I+LVGNK D    
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 130 --------LRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
                         V  E+ +  A R   F +ME SA     V   F       
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 1e-28
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +K+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L    + NI I+L GNK D++  
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122

Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                  +  F  ++N  + + SA  + N E  F  +  ++
Sbjct: 123 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  103 bits (257), Expect = 1e-28
 Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 9/164 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E       T           VE K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNK---ADL 130
            R +   Y++   G + V D             L   L      + V+++  NK    + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            +   ++ +         N +   T A     +      +  Q+
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            +++++G  G GK+ +L R    E    +K TIG    T    +  K +K  +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRH 132
             R     YY      + V D T         + L  +    +  +  +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 133 LCAVS---TEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             + S    E      +  +   + +SA++   +      ++  I
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.8 bits (247), Expect = 3e-27
 Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 2/162 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            K+ ++G   VGKS+L  +F   +F      TI   F T+ I V  +    Q+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQD 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRH 132
            Y      Y     G +LVY VT   +FE ++    +L        I IMLVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              +S E+ KA AE  N  F+E+SA E+    + F  ++ + 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.3 bits (243), Expect = 2e-26
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 3/167 (1%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDT 69
           +  Y+VVLIG+ GVGKS L + F     S++S    +G +   R++ V+ +     + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 70  A-GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNK 127
              +     +     +     L+VY +T   +FE       +  R     +I I+LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           +DL     VS  + +A A   +  F+ETSA    NV+  F  ++ Q+
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 9e-26
 Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 4/164 (2%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            K+ + G +GVGKS L+ RF    F  E   T+   +      ++D++V  +I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRH 132
                   + R   G +LVYD+T   +FE V      L       N+ ++LVGNKADL H
Sbjct: 62  DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 133 LCAVSTEDAKAFAERENTFFMETSALES-MNVENAFTEVLTQIY 175
              VSTE+ +  A      F E SA     N+   F E+  ++ 
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 2e-24
 Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 13/176 (7%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            ++ ++GD+  GKS+L+ RF    +  +       E   + + V+ +     I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADL 130
             +     +   A   + V+ +    +F+ V R    L  LRG     + + LVG +  +
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 118

Query: 131 RHLC--AVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183
                  V    A+A   + +   + ET A   +NV+  F EV  ++  +  ++ L
Sbjct: 119 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.5 bits (228), Expect = 3e-24
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           YKV+L+G  GVGKS L   F   E     ++        RSI V+ +     ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIML-VGNKADLRH 132
             R +           ++VY VT   +FE       +LR    ++ V ++ VGNK+DL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
              VS ++ +A A   +  F+ETSA    NV+  F  V+ QI 
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 162

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 3e-24
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 9/165 (5%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
           +KV+++G    GK+ +L +F+ NE              +    +     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRH 132
             R+  + YY      ++V D T           L ++  H D     +++  NK D++ 
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 133 ---LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              +  +S        +          AL    +      +++++
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 90.9 bits (224), Expect = 1e-23
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +F   +       TI          +E +  K  IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
             R+    Y+    G + V D       ++ +R L+  L     +   +++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 133 LCAVSTEDAKA---FAERENTFFMETSALESMNVENAFTEVLTQI 174
             + +              +      SA+   ++      +L  I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 89.6 bits (221), Expect = 3e-23
 Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 9/168 (5%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           D   +++L+G    GK+ LL +    + S  +  T G    +     + +  K  +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSV----QSQGFKLNVWDIG 68

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKAD 129
           GQ + R    +Y+      + V D      FE   + L EL      S + +++  NK D
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 130 L---RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           L        ++                  SAL    V++    V   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 87.0 bits (214), Expect = 3e-22
 Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 8/165 (4%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            ++ L+G    GK+  ++     +F+ +   T+G        ++    V  ++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQP 58

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGH-TDSNIVIMLVGNKADL-- 130
           R+R++   Y RG    + + D       E  +  L  L        I ++++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 131 -RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                 +  +   +  +         S  E  N++     ++   
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.0 bits (209), Expect = 4e-21
 Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 43/198 (21%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            K++L+G    GKS  + +      S     T G+         + + V  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 74  RYRAITSAYYRGAVGALLVYDVT-----------RHVTFENVERWLKELRGHTDSNIVIM 122
             R      +      + +  ++            +   E+   +   +      N  ++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 123 LVGNKADLRHLCAVSTEDAKAFAERENT--------------------------FFMETS 156
           L  NK DL     + +     F E +                            +   T 
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 157 ALESMNVENAFTEVLTQI 174
           A ++ N+   F  V   I
Sbjct: 177 ATDTENIRFVFAAVKDTI 194

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.8 bits (209), Expect = 7e-21
 Identities = 27/183 (14%), Positives = 53/183 (28%), Gaps = 24/183 (13%)

Query: 8   EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
           + Y   ++++L+G    GKS ++ +            T G+       + +   V   ++
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIFE----TKFQVDKVNFHMF 52

Query: 68  DTAGQERYRAITSAYYRGAVGALLVY-----------DVTRHVTFENVERWLKELRGHTD 116
           D  GQ   R      +      + V            D   +   E +  +         
Sbjct: 53  DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 112

Query: 117 SNIVIMLVGNKADLRHLCAVSTEDA-----KAFAERENTFFMETSALESMNVENAFTEVL 171
             I ++L  NK DL     ++ +         FA             E   V  A   + 
Sbjct: 113 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIR 172

Query: 172 TQI 174
            + 
Sbjct: 173 DEF 175

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.6 bits (203), Expect = 2e-20
 Identities = 35/196 (17%), Positives = 55/196 (28%), Gaps = 45/196 (22%)

Query: 13  LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
           L K++L+G    GKS  L +            T G+         E K V  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE----YDFEIKNVPFKMVDVGGQ 54

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-----------LRGHTDSNIVI 121
              R      +      L +   +        +R               +     SN+ I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 122 MLVGNKADLRHLCAVSTEDAKAFAERENT---------------------------FFME 154
           +L  NK DL             F E E                             +   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 155 TSALESMNVENAFTEV 170
           T+A+ + N+   F +V
Sbjct: 175 TTAINTENIRLVFRDV 190

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.9 bits (198), Expect = 7e-20
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 17/170 (10%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           K++ +G    GK+ LL     +       +T+   +   S  +    +K   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH- 132
            R +   Y+    G + + D      F+     L  L    +  ++  +++GNK D  + 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 133 ---------LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
                    L  ++T  ++    +        S +       AF + L+Q
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF-QWLSQ 165

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 80.1 bits (196), Expect = 1e-19
 Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            +++++G  G GK+ +L R    E       T           V  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL-- 130
             R     YY      + V D          +  L  +    +    ++++  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 131 -RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                 ++        +       +TSA +   ++ A   ++  +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.2 bits (186), Expect = 7e-18
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 46/198 (23%)

Query: 14  YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
            K++L+G    GKS ++ +      +       G+           K +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIVE----THFTFKDLHFKMFDVGGQR 53

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTF-----------ENVERWLKELRGHTDSNIVIM 122
             R      + G    +    ++ +              E+++ +         ++  I+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 123 LVGNKADLRHLCAVSTEDAKAFAERENT--------------------------FFMETS 156
           L  NK DL       +     + E   +                          +   T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 157 ALESMNVENAFTEVLTQI 174
           A ++ NV+  F  V   I
Sbjct: 174 ATDTKNVQFVFDAVTDVI 191

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.9 bits (180), Expect = 6e-17
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 7/162 (4%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
            V+ +G    GK+ L  R    ++  +++++I    A   +          I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTF-ENVERWLKELRGH---TDSNIVIMLVGNKADL 130
              +   +   A   + V D        ++V  +L ++        ++  +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172
               A S +  +   E+E      T +     ++++ T    
Sbjct: 121 AM--AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 70.9 bits (172), Expect = 5e-16
 Identities = 28/181 (15%), Positives = 50/181 (27%), Gaps = 21/181 (11%)

Query: 10  YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
           Y    K+V +G    GK+ LL     +                 S  +    +    +D 
Sbjct: 10  YKKTGKLVFLGLDNAGKTTLLHMLKDDRL-----GQHVPTLHPTSEELTIAGMTFTTFDL 64

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKA 128
            G  + R +   Y     G + + D   H      +  L   +   T +N+ I+++GNK 
Sbjct: 65  GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124

Query: 129 DLRHLCAVS---------------TEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
           D     +                    +              S L+       F  +   
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

Query: 174 I 174
           I
Sbjct: 185 I 185

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.0 bits (136), Expect = 9e-11
 Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 27/205 (13%)

Query: 12  YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
           Y   +++ G    GK++LL+  T +      + T+  +    +   +   V   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 72  QERYRAITSAYYRGAVGA-----LLVYDVTRHVTFENVERWLKELRGHTDS----NIVIM 122
             + R   S Y +           +V              +L ++   T+S     I I+
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 123 LVGNKADLRHLCAVSTEDAKAFAERE----------NTFFMETSALESMNVENAFTEVLT 172
           +  NK++L    A      K   E E          +   +E    E    EN    + +
Sbjct: 116 IACNKSEL--FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

Query: 173 QIYHVVSRKALDIGGDPAALPKGQT 197
                 +     +     ++ K + 
Sbjct: 174 TDGFKFANLEASVVAFEGSINKRKI 198

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 51.3 bits (121), Expect = 5e-09
 Identities = 23/151 (15%), Positives = 40/151 (26%), Gaps = 1/151 (0%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KVV+ G    GKS+LL+     E ++ +    G         +    +   I DTAG   
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
                           +          +       +        I  +       +    
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVEN 165
           A  T +    +E      +  SA     V+ 
Sbjct: 122 ADITGETLGMSEVNGHALIRLSARTGEGVDV 152

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (119), Expect = 5e-08
 Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 7/119 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI--WDTAGQ 72
            V + G++G GKS+ ++         E  +  GV   T             +  WD  G 
Sbjct: 58  NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117

Query: 73  ERYRAITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
                    Y              ++     +N     K +            V  K D
Sbjct: 118 GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS---MMKKEFYFVRTKVD 173

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 7/155 (4%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ--- 72
           V L+G    GKS+LL+  TR    +       +      +    +  +  + D  G    
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEG 62

Query: 73  -ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW--LKELRGHTDSNIVIMLVGNKAD 129
               + +   + R      ++  V               KE+  +  + +    +     
Sbjct: 63  ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVE 164
           +  L   + +       RE    +  SAL    + 
Sbjct: 123 VDLLEEEAVKALADALAREGLAVLPVSALTGAGLP 157

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 21/165 (12%), Positives = 47/165 (28%), Gaps = 10/165 (6%)

Query: 11  DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
           D   +V   G S  GKS+ L+  T  +    +  T G         V D      +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 71  GQ-------ERYRAITSAYYRGAVGALLVYDVTRHVTF--ENVERWLKELRGHTDSNIVI 121
                     +++     Y         +  +        +  ++ ++       + +V+
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 122 MLVGNKADLRHLCAVSTEDAKAFAER-ENTFFMETSALESMNVEN 165
           +   +K       A      +A      +      S+L+   V+ 
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 5/161 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG--Q 72
           ++V++G   VGKS LL+R    + ++ +    G      S  +  + +  +I DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132
           E    +        +  +   D+   V   +     ++ +          LV        
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
                 E         +      SAL+   +E     +  +
Sbjct: 121 EKINEEEIKNKLGTDRHMVK--ISALKGEGLEKLEESIYRE 159

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 21/163 (12%), Positives = 43/163 (26%), Gaps = 5/163 (3%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75
           V ++G   VGKS LL+     + +  S              + +   +    DT G  + 
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66

Query: 76  RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135
                 +    V   L          +       E      +   ++       + +   
Sbjct: 67  MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126

Query: 136 VSTEDAKAFAERENTF----FMETSALESMNVENAFTEVLTQI 174
            +    +A                SAL+   V     ++L  +
Sbjct: 127 AAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 14/138 (10%), Positives = 41/138 (29%), Gaps = 14/138 (10%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKS--------TIGVEFATRSIRVEDK--IVKA 64
            ++++G  GVGKS+ ++          S           +    A  ++ + D   +++ 
Sbjct: 34  TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 93

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV--IM 122
              +       ++         +  L V  +  +      +   K +       I    +
Sbjct: 94  GYINDMALNIIKSFLLDKTIDVL--LYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAI 151

Query: 123 LVGNKADLRHLCAVSTED 140
           +    A       +  ++
Sbjct: 152 VALTHAQFSPPDGLPYDE 169

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 6/164 (3%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT-----A 70
           + ++G   VGKS LL++    + S+ S+           I  E       +         
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
            +   R +  A         LV  V     +   +  +        + + I+ V    ++
Sbjct: 68  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPV-ILAVNKVDNV 126

Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           +    +        ++      +  SA   +NV+     V   +
Sbjct: 127 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 170

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 11/169 (6%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75
           V L+G   VGKS LLS  +  +  +       +      +  +D      + D  G    
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEG 62

Query: 76  ----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
                 +   + R      ++  V      E  + +   L  + + +   + +  +  + 
Sbjct: 63  AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122

Query: 132 HLCAVSTEDAKAFAER------ENTFFMETSALESMNVENAFTEVLTQI 174
               +   +A    E       ++      SA+    +     EV  Q+
Sbjct: 123 VANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 171

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.6 bits (83), Expect = 8e-04
 Identities = 31/164 (18%), Positives = 47/164 (28%), Gaps = 14/164 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           KV ++G   VGKS L +     E +L S    G         V     K    DTAG  R
Sbjct: 10  KVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 75  YRAITS---------AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVG 125
              +                   A +V  V         +               +++  
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128

Query: 126 NKADLRHLCAVSTEDAKAFAERENTF----FMETSALESMNVEN 165
               + H      E  K F E+         + TSA +  N++ 
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.7 bits (83), Expect = 9e-04
 Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 14/176 (7%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75
           V+++G   VGKS L ++  + + ++      GV        VE      ++ DT G    
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 76  RAITSAYYRGAV------GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
                +     V       A LV  V         E           S +  +LV NKA+
Sbjct: 62  PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDE-SLADFLRKSTVDTILVANKAE 120

Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDI 185
              L     E             +  SA  ++N++     +L  I   +  K LD+
Sbjct: 121 N--LREFEREVKPELYSLGFGEPIPVSAEHNINLD----TMLETIIKKLEEKGLDL 170

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 26/179 (14%), Positives = 45/179 (25%), Gaps = 20/179 (11%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75
           ++  G S VGKS L+ R T  +     +  +  +      +    I         G  + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 76  RAITSAYYRGAVGA---------LLVYDVTRHVTFENVERWLKELRGHT-------DSNI 119
                                  +LV D               E+           + +I
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 120 VIMLVGNKADLRHLCAVSTEDAKAFAERE----NTFFMETSALESMNVENAFTEVLTQI 174
             ++  NK D                E      +  F+  SA    N+E     +   I
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 20/175 (11%), Positives = 49/175 (28%), Gaps = 13/175 (7%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
           ++ L G S VGKS+ ++     +    + S  G         + D++    +      + 
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 75  YRAITS------AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
            ++           Y      L        +        ++         I ++++  KA
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 129 DL---RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
           D          +    +          +  S+      +    E    I  +++R
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKD----EAWGAIKKMINR 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.87
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.79
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.79
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.74
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.73
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.72
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.69
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.66
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.64
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.58
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.55
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.54
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.43
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.39
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.37
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.32
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.21
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.13
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.07
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.05
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.75
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.49
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.46
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.35
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.31
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.25
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.22
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.19
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.19
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.19
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.19
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.18
d1okkd2	207	GTPase domain of the signal recognition particle r	98.13
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.72
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.68
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.66
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.6
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.53
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.52
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.48
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.47
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.46
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.39
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.38
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.38
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.37
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.34
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.33
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.3
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.27
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.24
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.24
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.24
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.23
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.21
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.21
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.2
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.19
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.18
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.13
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.13
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.13
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.1
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.09
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.09
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.09
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.08
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.08
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.07
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.06
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.05
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.05
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.02
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.02
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.01
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.99
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.99
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.94
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.93
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.92
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.92
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.92
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.91
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.91
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.91
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.9
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.9
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.9
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.86
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.85
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.84
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.78
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.76
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.76
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.73
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.72
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.72
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.71
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.67
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.63
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.58
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.56
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.52
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.47
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.46
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.43
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.4
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.37
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.37
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.3
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.23
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.22
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.2
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.12
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.1
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.04
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.04
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.04
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.04
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.02
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.99
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.97
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.88
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.73
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.67
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.61
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.57
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.55
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.5
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.46
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.45
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.42
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.37
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.28
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.28
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.25
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.22
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.17
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.17
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.13
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.12
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.02
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.02
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.97
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.94
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.93
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.92
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.85
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.85
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.78
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.76
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.75
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.64
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.38
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.37
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.35
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.32
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.21
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.11
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.91
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.84
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.81
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.76
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.7
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.4
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.38
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	93.2
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.06
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.04
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.57
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.46
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.21
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.07
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	91.75
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.55
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.51
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.74
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.49
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.94
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.71
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	87.92
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	87.91
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	87.44
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.41
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	87.39
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.93
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.56
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.48
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.62
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.79
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	84.52
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	84.45
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.11
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.7
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	83.39
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.11
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.8
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	82.78
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.74
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.5
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	80.87
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	80.52

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-37  Score=222.03  Aligned_cols=167  Identities=40%  Similarity=0.750  Sum_probs=156.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      +++.+||+++|.+|||||||+++|.++.+...+.++.+.+.....+......+.+.+|||||++.+..++..+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            57889999999999999999999999999888889999899998998999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      |+|||++++.++..+..|+..+........|+++++||+|+.+.+.+..+++..+++.++++|+++||++|.|++++|++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999999888887766678999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027894          170 VLTQIYH  176 (217)
Q Consensus       170 i~~~~~~  176 (217)
                      |++.+.+
T Consensus       162 l~~~i~e  168 (169)
T d3raba_         162 LVDVICE  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-37  Score=222.39  Aligned_cols=170  Identities=42%  Similarity=0.762  Sum_probs=158.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ++++.+||+++|.+|||||||+++|..+.+...+.++.+.++....+.+.+..+++.+|||||++.+..++..+++++++
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence            36788999999999999999999999999988888998899999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      +++|+|++++.+++.+..|+..+........|+++|+||+|+.+...+..+++..+++.++++++++||++|+|++++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            99999999999999999999988777667899999999999988788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027894          169 EVLTQIYHVV  178 (217)
Q Consensus       169 ~i~~~~~~~~  178 (217)
                      +|++.++...
T Consensus       161 ~l~~~l~~~~  170 (171)
T d2ew1a1         161 DLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9998887653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-37  Score=219.10  Aligned_cols=172  Identities=47%  Similarity=0.783  Sum_probs=160.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      +++.+||+++|.+|||||||+++|..+.+...+.++.+.......+..+.....+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            57889999999999999999999999999888888888888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++|+|.+++.++..+..|+..+......+.|+++|+||+|+.............+++.++++|+++||++|+|++++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence            99999999999999999999988777788999999999999888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcc
Q 027894          170 VLTQIYHVVSRK  181 (217)
Q Consensus       170 i~~~~~~~~~~~  181 (217)
                      +++.+.+....+
T Consensus       162 l~~~i~~~~~~~  173 (174)
T d2bmea1         162 CARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcC
Confidence            999998877554

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-37  Score=218.04  Aligned_cols=166  Identities=52%  Similarity=0.881  Sum_probs=155.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      +++.+||+++|.+|||||||+++|+++.+...+.++.+.++.......++..+.+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            36789999999999999999999999999998888888888888998999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++|||+++..|++.+..|+..+........|+++++||+|+........+++..+++..+++|+++||++|.|++++|+.
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988777788999999999999887888889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027894          170 VLTQIY  175 (217)
Q Consensus       170 i~~~~~  175 (217)
                      |++.++
T Consensus       161 i~~~i~  166 (166)
T d1z0fa1         161 AAKKIY  166 (166)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998763

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-37  Score=220.41  Aligned_cols=162  Identities=37%  Similarity=0.631  Sum_probs=152.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|.++.+...+.+|.+.+.........+..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999888889998888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      ||++++.|++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++++++++.++++|+++||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999987765 67999999999999888889999999999999999999999999999999999999


Q ss_pred             HHH
Q 027894          173 QIY  175 (217)
Q Consensus       173 ~~~  175 (217)
                      .++
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=217.78  Aligned_cols=173  Identities=79%  Similarity=1.196  Sum_probs=158.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .++.+||+++|.+|||||||+++|+++.+...+.++.+.......+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            36789999999999999999999999999888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      ++|||.+++.|+..+..|+..+......+.|+++|+||+|+.+.+....+....+....+.+|+++||++|+|++++|++
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            99999999999999999999998887788999999999999887778888888999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 027894          170 VLTQIYHVVSRKA  182 (217)
Q Consensus       170 i~~~~~~~~~~~~  182 (217)
                      +++.+.+...+++
T Consensus       161 l~~~i~~~~~~~q  173 (175)
T d2f9la1         161 ILTEIYRIVSQKQ  173 (175)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhhcc
Confidence            9999988776554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=220.85  Aligned_cols=165  Identities=38%  Similarity=0.678  Sum_probs=148.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      +.+||+++|.+|||||||+++|.++.+...+.++.+.......+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            67999999999999999999999999999999999999999899889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |||+++++||+.+..|+..+........|+++|+||+|+...+.++.+++..++++++++|+++||++|.|++++|++|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999887766557789999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027894          172 TQIYH  176 (217)
Q Consensus       172 ~~~~~  176 (217)
                      +.+++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98863

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-37  Score=217.86  Aligned_cols=164  Identities=32%  Similarity=0.361  Sum_probs=134.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+++|.+..+.... ++. .......+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~-~~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEA-EAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcC-Cee-eeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            79999999999999999999988764433 333 3444556778999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      |++++.|++.+..|+..+..... ...|+++|+||+|+.+.+++...++.++++.++++|+++||++|.|++++|++|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            99999999999999998876553 67899999999999888889999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 027894          173 QIYHVVS  179 (217)
Q Consensus       173 ~~~~~~~  179 (217)
                      .+...++
T Consensus       160 ~i~~~~~  166 (168)
T d2gjsa1         160 QIRLRRD  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            8877654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-37  Score=218.72  Aligned_cols=169  Identities=30%  Similarity=0.456  Sum_probs=152.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +....+||+++|.+|||||||+++|+++.+...+.++. .+.....+.+++..+.+.+||++|++.+...+..+++.+|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            45667999999999999999999999999988877765 45556778889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +++|||++++.||+.+..|+..+.... ..+.|+++|+||+|+.+.+....+++..++...+++|++|||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            999999999999999999998876543 3679999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027894          168 TEVLTQIYHVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      +.|++.+.+.+
T Consensus       161 ~~l~~~i~k~~  171 (173)
T d2fn4a1         161 EQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999987765

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=214.52  Aligned_cols=161  Identities=37%  Similarity=0.733  Sum_probs=151.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999999999888888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++..++++|+++||++|+|++++|++|++.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999988887766789999999999998888889999999999999999999999999999999999987


Q ss_pred             H
Q 027894          174 I  174 (217)
Q Consensus       174 ~  174 (217)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-36  Score=218.06  Aligned_cols=171  Identities=46%  Similarity=0.795  Sum_probs=130.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .+++.+||+++|.+|||||||+++|+++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            47889999999999999999999999999888888898889999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      +|+|||++++.|++.+..|+..+......+.|+++|+||.|+........+++..++...+++|+++||++|+|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998877778899999999999988888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 027894          169 EVLTQIYHVVS  179 (217)
Q Consensus       169 ~i~~~~~~~~~  179 (217)
                      +|++.+.+..+
T Consensus       162 ~l~~~i~~k~~  172 (173)
T d2fu5c1         162 TLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999876654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-36  Score=214.26  Aligned_cols=169  Identities=51%  Similarity=0.857  Sum_probs=152.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      +.+||+|+|.+|||||||+++|+++.+...+.++.+...........+..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            56999999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |||++++.+|+.+..|+..+......+.|+++|+||+|+...+....++...++...+++|+++||++|.|++++|.+|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999888877778899999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 027894          172 TQIYHVVSR  180 (217)
Q Consensus       172 ~~~~~~~~~  180 (217)
                      +.+.+...+
T Consensus       162 ~~i~~~~~~  170 (173)
T d2a5ja1         162 KEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            998865543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.5e-36  Score=212.10  Aligned_cols=163  Identities=40%  Similarity=0.756  Sum_probs=153.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|||||||+++|..+.+...+.++.+..........+.....+.+||++|++.+..++..+++.+|++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999999999988888888888988999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |||++++.+|+.+..|+..+........|+++|+||+|+.+.+.+..++++++++..+++|+++||++|.|++++|.+|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999888877778899999999999988888999999999999999999999999999999999998


Q ss_pred             HHH
Q 027894          172 TQI  174 (217)
Q Consensus       172 ~~~  174 (217)
                      +.+
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            875

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-36  Score=217.75  Aligned_cols=175  Identities=48%  Similarity=0.810  Sum_probs=162.4

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      +++++.+||+|+|.+|||||||+++|+.+.+...+.++.+.......+.+.+..+.+.+|||||++.+..++..+++++|
T Consensus         1 ~~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~   80 (194)
T d2bcgy1           1 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH   80 (194)
T ss_dssp             CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred             CCCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence            36789999999999999999999999999999988899999888888989999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      ++++|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++...++...+++|+++||++|.|++++|
T Consensus        81 ~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f  160 (194)
T d2bcgy1          81 GIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF  160 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHH
Confidence            99999999999999999998888877666889999999999999888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 027894          168 TEVLTQIYHVVSRKA  182 (217)
Q Consensus       168 ~~i~~~~~~~~~~~~  182 (217)
                      +++++.+.+......
T Consensus       161 ~~l~~~i~~~~~~~~  175 (194)
T d2bcgy1         161 LTMARQIKESMSQQN  175 (194)
T ss_dssp             HHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHhhhcc
Confidence            999999987765443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.1e-36  Score=213.22  Aligned_cols=164  Identities=33%  Similarity=0.538  Sum_probs=148.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      +++||+++|.+|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            469999999999999999999999998888877776544 5556789999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESM-NVENAFTE  169 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~  169 (217)
                      |||++++.||+.+..|+..+.+.. ..+.|+++++||+|+...+.++.+++.++++.++++|+++||+++. ||+++|+.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            999999999999999999887654 3679999999999999888899999999999999999999999875 99999999


Q ss_pred             HHHHHHH
Q 027894          170 VLTQIYH  176 (217)
Q Consensus       170 i~~~~~~  176 (217)
                      |++.+.+
T Consensus       162 l~~~i~~  168 (169)
T d1x1ra1         162 LVRVIRQ  168 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=3.8e-36  Score=214.08  Aligned_cols=163  Identities=34%  Similarity=0.534  Sum_probs=146.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      +.+||+++|.+|||||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            468999999999999999999999999888888887665 4556689999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++|+++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999998887654 3689999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027894          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      ++.+.
T Consensus       162 ~~~i~  166 (168)
T d1u8za_         162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-36  Score=214.16  Aligned_cols=164  Identities=34%  Similarity=0.437  Sum_probs=149.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|.+|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3468999999999999999999999999888888887665 456778999999999999999999998899999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      +|||++++.||+.+..|+..+.... ..+.|+++|+||+|+...+.++.++++++++.++++|+++||++|.|++++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998886654 367999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027894          170 VLTQIY  175 (217)
Q Consensus       170 i~~~~~  175 (217)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-36  Score=217.37  Aligned_cols=171  Identities=40%  Similarity=0.693  Sum_probs=152.3

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC----------eEEEEEEEeCCCchhhhhh
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED----------KIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~   78 (217)
                      ++++.+||+++|.+|||||||+++|+++.+...+.++.+.++....+.+++          ..+.+.+|||+|++.+..+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~   80 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL   80 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH
Confidence            367889999999999999999999999999888878877777666665533          3468899999999999999


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      +..+++++|++++|||++++.+++.+..|+..+..... ...|+++|+||+|+...+++..+++.+++++++++|+++||
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999999887765543 67889999999999988899999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Q 027894          158 LESMNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       158 ~~~~~v~~~~~~i~~~~~~~~~  179 (217)
                      ++|+|++++|++|++.+.+...
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999886553

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=211.97  Aligned_cols=164  Identities=45%  Similarity=0.758  Sum_probs=154.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|||||||+++|+.+.+...+.++.+.......+......+.+.+||++|++.+...+..+++++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            46899999999999999999999999999988999999988888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |+|++++.+++.+..|+..+.....++.|+++|+||+|+...+.++.+++..++..++++|+++||++|.|++++|++|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999988777768899999999999988888999999999999999999999999999999999998


Q ss_pred             HHHH
Q 027894          172 TQIY  175 (217)
Q Consensus       172 ~~~~  175 (217)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            7653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=210.92  Aligned_cols=165  Identities=33%  Similarity=0.546  Sum_probs=145.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            48999999999999999999999998888877765 45566677899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      ||.+++.|++.+..|+..+.... ....|+++|+||+|+...+.+..+++.++++.++++|+++||++|.|++++|+.|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999988766543 36799999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 027894          172 TQIYHVV  178 (217)
Q Consensus       172 ~~~~~~~  178 (217)
                      +.+.+.+
T Consensus       164 ~~i~k~~  170 (171)
T d2erya1         164 RVIRKFQ  170 (171)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9886543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=209.81  Aligned_cols=164  Identities=34%  Similarity=0.458  Sum_probs=143.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|||||||+++|+.+.+...+.+|.+..+... +..++..+.+.+||++|++.+. ....+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            48999999999999999999999999888888887766544 4478889999999999998764 456688999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESM-NVENAFTEV  170 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~i  170 (217)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.++.+++.+++++++++|+++||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999988876554433 3689999999999998888899999999999999999999999998 599999999


Q ss_pred             HHHHHHHh
Q 027894          171 LTQIYHVV  178 (217)
Q Consensus       171 ~~~~~~~~  178 (217)
                      ++.+.+.+
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=211.34  Aligned_cols=161  Identities=31%  Similarity=0.429  Sum_probs=143.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|+++.+...+.+|.+..+ ......++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            58999999999999999999999999888888877554 44556888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccC--CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHT--DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      ||++++.+++.+..|+..+....  ..+.|+++|+||+|+...+++..+++.++++.++++|+++||++|.|++++|+.|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999988776543  2679999999999998888899999999999999999999999999999999998


Q ss_pred             HHHH
Q 027894          171 LTQI  174 (217)
Q Consensus       171 ~~~~  174 (217)
                      ++.+
T Consensus       161 ~~~~  164 (171)
T d2erxa1         161 LNLE  164 (171)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-35  Score=208.06  Aligned_cols=166  Identities=44%  Similarity=0.743  Sum_probs=144.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ++..+||+++|.+|||||||+++|+.+.+... ..++.+.+.....+...+..+.+.+|||+|++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            57889999999999999999999999987554 34556778888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      +++|||++++.++..+..|+..+........|+++|+||+|......+..+++..+++.++++|+++||++|.|++++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999988887776667899999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027894          169 EVLTQIY  175 (217)
Q Consensus       169 ~i~~~~~  175 (217)
                      +|++.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9998874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-35  Score=208.69  Aligned_cols=164  Identities=32%  Similarity=0.507  Sum_probs=148.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|||||||+++|+++.+...+.++.+ +........++..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            358999999999999999999999999888877776 4455667789999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..+++..+++.++++|+++||++|.|++++|+.|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            9999999999999999988776443 679999999999998888889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027894          171 LTQIYH  176 (217)
Q Consensus       171 ~~~~~~  176 (217)
                      ++.+..
T Consensus       161 ~~~i~~  166 (167)
T d1kaoa_         161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHcc
Confidence            987753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-35  Score=212.00  Aligned_cols=165  Identities=28%  Similarity=0.449  Sum_probs=143.5

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +....+||+++|.+|||||||+++|+.+.+...+.+|.+. .....+...+..+.+.+||++|++.+...+..+++.+|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            3567899999999999999999999999998888888764 455666678888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHH-HHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHcC-CcEEE
Q 027894           89 ALLVYDVTRHVTFENVER-WLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAEREN-TFFME  154 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~  154 (217)
                      +++|||++++.||+.+.. |...+... ..+.|+++|+||+|+.+            .+.++.+++.++++.++ +.|++
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E  162 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  162 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEE
Confidence            999999999999998755 44555444 47899999999999853            45778899999999887 78999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 027894          155 TSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       155 ~Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      |||++|.|++++|+.+++.++
T Consensus       163 ~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         163 CSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCCcCHHHHHHHHHHHHc
Confidence            999999999999999998874

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.3e-35  Score=207.28  Aligned_cols=163  Identities=40%  Similarity=0.693  Sum_probs=150.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      .++||+++|.+|||||||+++|+++.+...+.++.+.++....+...+..+.+.+||++|++.+...+..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999998999988888889899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC---cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH---LCAVSTEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      |||++++.|++.+..|+..+........|+++++||+|+.+   .+.+..+++.++++..+++|+++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999998887776667899999999999853   467888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027894          169 EVLTQI  174 (217)
Q Consensus       169 ~i~~~~  174 (217)
                      .|++.+
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            987653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=209.83  Aligned_cols=163  Identities=28%  Similarity=0.373  Sum_probs=140.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|||||||+++|+.+.+...+.+|.+.. ........+..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            36899999999999999999999999988888887644 45556678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHc-CCcEEEeccC
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAERE-NTFFMETSAL  158 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~-~~~~~~~Sa~  158 (217)
                      |||+++++||+.+..|+.........+.|+++|+||+|+.+            .+.+..+++.+++..+ +++|+++||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            99999999999997654444444447899999999999853            3457889999999886 4789999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027894          159 ESMNVENAFTEVLTQIY  175 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~~~  175 (217)
                      +|.|++++|+.++..+.
T Consensus       161 ~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         161 TQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             TCTTHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999887664

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-36  Score=214.17  Aligned_cols=162  Identities=31%  Similarity=0.557  Sum_probs=141.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      -.+||+++|.+|||||||+++|+++.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            35899999999999999999999999998888999999888888888889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  171 (217)
                      |||++++.||+.+..|+..+.... .+.|+++|+||+|+......  ++...++...+++|+++||++|.|++++|++|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999998887665 68999999999999764433  345577888899999999999999999999999


Q ss_pred             HHHHH
Q 027894          172 TQIYH  176 (217)
Q Consensus       172 ~~~~~  176 (217)
                      +.++.
T Consensus       159 ~~l~~  163 (170)
T d1i2ma_         159 RKLIG  163 (170)
T ss_dssp             HHHHT
T ss_pred             HHHcc
Confidence            98863

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=205.96  Aligned_cols=169  Identities=45%  Similarity=0.734  Sum_probs=154.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +...++||+++|.+|||||||+++|.++.+...+.++.+.......+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus         3 ~~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T d1x3sa1           3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   82 (177)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             cccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            34567999999999999999999999999999988888888888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +++|||++++.+++.+..|+..+..... ...|+++++||.|... +.+...+..++++.++++|+++||++|+|++++|
T Consensus        83 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f  161 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999877553 6788999999999754 6788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027894          168 TEVLTQIYHVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      +++++.+.+..
T Consensus       162 ~~l~~~l~~~p  172 (177)
T d1x3sa1         162 EELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHHHTSG
T ss_pred             HHHHHHHccCc
Confidence            99999988653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=207.99  Aligned_cols=162  Identities=29%  Similarity=0.386  Sum_probs=141.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      ..||+++|.+|||||||+++|..+.+...+.+|.+ .........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999888878765 44456667888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHcC-CcEEEeccCC
Q 027894           93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAEREN-TFFMETSALE  159 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  159 (217)
                      ||++++.||+.+..|+..+.....++.|+++|+||+|+.+            .+.+..+++..+++.++ ++|+++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999887655444444447899999999999953            24578889999999988 5799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQIY  175 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~~  175 (217)
                      |.|++++|+.+++.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998876

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=205.66  Aligned_cols=163  Identities=31%  Similarity=0.510  Sum_probs=146.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            358999999999999999999999999888888876554 4555678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-ENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      |||++++.||+.+..|+..+.... .++.|+++|+||+|+........++...++++ .+++|+++||++|.|++++|++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999999998887643 36899999999999988888899999999887 4789999999999999999999


Q ss_pred             HHHHHH
Q 027894          170 VLTQIY  175 (217)
Q Consensus       170 i~~~~~  175 (217)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-34  Score=205.13  Aligned_cols=163  Identities=44%  Similarity=0.767  Sum_probs=145.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  172 (217)
                      ||.+++.|++.+..|+..+........|++++++|.|+.. .....+++.++++.++++|+++||++|+|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999998888887778899999999999864 456788899999999999999999999999999999998


Q ss_pred             HHHH
Q 027894          173 QIYH  176 (217)
Q Consensus       173 ~~~~  176 (217)
                      .+.+
T Consensus       161 ~i~~  164 (166)
T d1g16a_         161 LIQE  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=203.72  Aligned_cols=163  Identities=31%  Similarity=0.520  Sum_probs=146.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|||||||+++|+++.+...+.++.+..+... +...+..+.+.+||++|++.+...+..+++.++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            358999999999999999999999999888888887666544 5578888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  170 (217)
                      |+|++++.+++.+..|+..+..... .++|+++|+||+|+.. +.+..+++.++++.++++|+++||++|+|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999998877543 6799999999999864 5677889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027894          171 LTQIYH  176 (217)
Q Consensus       171 ~~~~~~  176 (217)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-34  Score=203.72  Aligned_cols=164  Identities=29%  Similarity=0.410  Sum_probs=141.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCC---chhhhhhhHhhhcCCcE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAG---QERYRAITSAYYRGAVG   88 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G---~~~~~~~~~~~~~~~d~   88 (217)
                      .+||+++|.+|+|||||+++|.+..+.. ...++.+.+.....+.+++..+.+.+||+++   ++++  ++..+++.+|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            5899999999999999999999876543 3345566677778888899999999999775   4444  56678899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894           89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +++|||++++.|++.+..|+..+..... .+.|+++|+||+|+...++++.+++++++..++++|+++||++|.|++++|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            9999999999999999999988876543 689999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027894          168 TEVLTQIYHVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      +.|++.+...+
T Consensus       161 ~~l~~~i~~rr  171 (172)
T d2g3ya1         161 EGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHcc
Confidence            99999987654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=200.60  Aligned_cols=166  Identities=39%  Similarity=0.691  Sum_probs=146.2

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..+||+|+|.+|||||||+++|+.+.+...+.++.+..........++..+.+.+||++|+..+...+..++..+|++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            45678999999999999999999999999988889888888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhccC----CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-CCcEEEeccCCCCCHH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGHT----DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-NTFFMETSALESMNVE  164 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~  164 (217)
                      ++++|.+++.|++.+..|+..+....    ..+.|+++|+||+|+.+ +.+..+++..++++. .++|+++||++|+|++
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            99999999999999999987775432    25789999999999964 678889999999876 5899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027894          165 NAFTEVLTQIYH  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      ++|+++++.+++
T Consensus       162 e~f~~l~~~il~  173 (174)
T d1wmsa_         162 AAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998863

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.5e-33  Score=197.05  Aligned_cols=158  Identities=39%  Similarity=0.705  Sum_probs=143.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-AITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~ii~   91 (217)
                      .+||+++|.+|||||||+++|+.+.+...+.++.+.........+......+.+||++|...+. ..+..+++++|++++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            5899999999999999999999999999998998888888888899999999999999987665 456778999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC---CCCHHHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE---SMNVENAF  167 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~  167 (217)
                      |||++++.||+.+..|+..+.... ..+.|+++|+||+|+.+.+.++.+++.++++.++++|+++||++   ++||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            999999999999999998887654 36899999999999988888999999999999999999999987   56999999


Q ss_pred             HHH
Q 027894          168 TEV  170 (217)
Q Consensus       168 ~~i  170 (217)
                      ++|
T Consensus       162 ~~l  164 (165)
T d1z06a1         162 MTL  164 (165)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-33  Score=201.94  Aligned_cols=166  Identities=38%  Similarity=0.667  Sum_probs=131.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      .+||+++|.+|||||||+++|+++.+...+.++.+.......... +.....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999988887777766655555544 3445678999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccC----CCCCcEEEEEeCCCCCCcc-cCCHHHHHHHHHHcC-CcEEEeccCCCCCHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHT----DSNIVIMLVGNKADLRHLC-AVSTEDAKAFAEREN-TFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  165 (217)
                      |||++++.||+.+..|+..+....    ..++|+++|+||+|+.+.+ .+..+++.++++.++ ++|+++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999999999998875432    2578999999999997643 467888999998886 7899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027894          166 AFTEVLTQIYHVV  178 (217)
Q Consensus       166 ~~~~i~~~~~~~~  178 (217)
                      +|++|++.++++.
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999888764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=202.35  Aligned_cols=164  Identities=32%  Similarity=0.480  Sum_probs=141.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..+||+|+|.+|||||||+++|+.+.+...+.+|.+. .....+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            456799999999999999999999999998888888764 4455666899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHH-HHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcC-CcEEEe
Q 027894           90 LLVYDVTRHVTFENVER-WLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAEREN-TFFMET  155 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  155 (217)
                      ++|||++++.||+.+.. |...+... ..+.|+++|+||+|+.+.            ......+...+++.++ ++|++|
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~  159 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence            99999999999999876 55555444 478999999999998532            3456778888888877 789999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q 027894          156 SALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       156 Sa~~~~~v~~~~~~i~~~~~  175 (217)
                      ||++|.|++++|+.+++.++
T Consensus       160 SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         160 SALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             CTTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999998874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-33  Score=203.11  Aligned_cols=169  Identities=40%  Similarity=0.692  Sum_probs=149.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+|+|.+|||||||+++|+++.+...+.+|.+.+.........+..+.+.+||++|+..+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            48999999999999999999999999998889999988888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccC----CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHT----DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-RENTFFMETSALESMNVENAF  167 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~  167 (217)
                      +|.+++.+++.+..|+..+....    ..+.|+++|+||+|+.+ +.+..++...++. ..+++|+++||++|.|++++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            99999999999999987775432    25689999999999865 4566666777765 457999999999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 027894          168 TEVLTQIYHVVSRKA  182 (217)
Q Consensus       168 ~~i~~~~~~~~~~~~  182 (217)
                      +++++.+.+.+.+.+
T Consensus       161 ~~l~~~i~~~~~~~~  175 (184)
T d1vg8a_         161 QTIARNALKQETEVE  175 (184)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccc
Confidence            999999988776553

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.4e-33  Score=198.83  Aligned_cols=163  Identities=27%  Similarity=0.405  Sum_probs=140.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|+.+.+...+.++.+. .....+..++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            479999999999999999999999998888787653 4445566788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHcC-CcEEEeccCC
Q 027894           93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAEREN-TFFMETSALE  159 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  159 (217)
                      ||++++.||+.+..|+.........+.|+++|+||+|+..            .+.++.++...+++..+ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999987755444433447899999999999853            35688899999999887 5799999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 027894          160 SM-NVENAFTEVLTQIYH  176 (217)
Q Consensus       160 ~~-~v~~~~~~i~~~~~~  176 (217)
                      +. +++++|+.++..++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999988763

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-31  Score=190.76  Aligned_cols=164  Identities=20%  Similarity=0.325  Sum_probs=137.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      +.+||+++|.+|||||||+++|+++.+.... ++.+. .....+.+++..+.+.+|||+|+..+.     +++.+|++++
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-~t~~~-~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESE-QYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCCC-CSSCE-EEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCcC-Cccce-eEEEEeecCceEEEEEEeecccccccc-----cccccceeEE
Confidence            4699999999999999999999999986543 44443 345667789999999999999987543     6788999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccC---CCCCcEEEEEeCCCCC--CcccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHT---DSNIVIMLVGNKADLR--HLCAVSTEDAKAFAER-ENTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~  165 (217)
                      |||++++.||+.+..|+..+....   ....|+++|+||.|+.  ..+.+..+++..++.. .+++|+++||+++.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            999999999999999988876543   3667999999998874  4556788888888765 578999999999999999


Q ss_pred             HHHHHHHHHHHHhhccc
Q 027894          166 AFTEVLTQIYHVVSRKA  182 (217)
Q Consensus       166 ~~~~i~~~~~~~~~~~~  182 (217)
                      +|..+++.+...+.+++
T Consensus       157 ~F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcc
Confidence            99999999998886553

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=188.22  Aligned_cols=155  Identities=20%  Similarity=0.355  Sum_probs=127.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|||||||+++|..+.+...+.+|.+..+.  .+..++  +.+.+||+||++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            589999999999999999999999998888787765543  344454  7899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHH-----HHHcCCcEEEeccCCCCCHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAF-----AERENTFFMETSALESMNVENA  166 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      ||+++..+++....|+..+.... .++.|+++|+||.|+.+.  ....+..+.     +...+++++++||++|+|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchh--hhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            99999999999988877665543 378999999999998642  222222222     2234567999999999999999


Q ss_pred             HHHHHHH
Q 027894          167 FTEVLTQ  173 (217)
Q Consensus       167 ~~~i~~~  173 (217)
                      |++|+++
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.9e-30  Score=185.62  Aligned_cols=159  Identities=22%  Similarity=0.326  Sum_probs=125.0

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+.+..+||+++|.+|||||||+++|.++.+.... ++.+.  ....+...+  +.+.+||++|++.+...+..+++.+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~--~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeee--eEEEeccCC--eeEeEeeccccccchhHHHHHhhccc
Confidence            34556799999999999999999999998875433 33333  333444444  77899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHH-----HHHcCCcEEEeccCCCC
Q 027894           88 GALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAF-----AERENTFFMETSALESM  161 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  161 (217)
                      ++++|||+++..++..+..|+..+..... .+.|+++|+||+|+...  .......+.     +....++++++||++|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccc--ccHHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            99999999999999999887776655443 67999999999999653  232322222     22245679999999999


Q ss_pred             CHHHHHHHHHHH
Q 027894          162 NVENAFTEVLTQ  173 (217)
Q Consensus       162 ~v~~~~~~i~~~  173 (217)
                      |++++|+||++.
T Consensus       164 gv~e~~~~l~~~  175 (176)
T d1fzqa_         164 GVQDGMNWVCKN  175 (176)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CHHHHHHHHHhc
Confidence            999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=7.5e-30  Score=180.71  Aligned_cols=156  Identities=19%  Similarity=0.334  Sum_probs=122.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|.+..+. ...+|.+..  ...+...+  +.+.+||+||++.+...+..+++.++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeee--eeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            489999999999999999999988764 344555543  33444444  7789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHhc-cCCCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHH
Q 027894           93 YDVTRHVTFENVERWLKELRG-HTDSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVENA  166 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~  166 (217)
                      +|+++..++.....++..+.. ....+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|+|+.++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc--CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            999999999888766655443 333789999999999997533  333333222     223467999999999999999


Q ss_pred             HHHHHHHHH
Q 027894          167 FTEVLTQIY  175 (217)
Q Consensus       167 ~~~i~~~~~  175 (217)
                      |++|++++.
T Consensus       155 ~~~l~~~i~  163 (165)
T d1ksha_         155 IDWLLDDIS  163 (165)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=3.7e-30  Score=185.15  Aligned_cols=162  Identities=19%  Similarity=0.329  Sum_probs=123.6

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....+||+++|.+|||||||+++|....+... .+|.+....  .....+  +.+.+||++|++.+...+..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVE--TLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCCEE--EEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceEEE--EEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            44579999999999999999999998876443 355444333  333344  7889999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHH-----HHHcCCcEEEeccCCCCCH
Q 027894           90 LLVYDVTRHVTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAF-----AERENTFFMETSALESMNV  163 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v  163 (217)
                      ++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+  .....+....     +...+++++++||++|+|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc--ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            9999999999999988877665443 336799999999999864  2333333332     2334567999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027894          164 ENAFTEVLTQIYHVV  178 (217)
Q Consensus       164 ~~~~~~i~~~~~~~~  178 (217)
                      +++|++|++.+.+.+
T Consensus       167 ~e~~~~l~~~i~~~~  181 (182)
T d1moza_         167 TEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999887653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=9.4e-30  Score=181.58  Aligned_cols=156  Identities=18%  Similarity=0.366  Sum_probs=121.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|||||||+++|.++.+... .+|.+...  .......  +.+.+||+||++.+...+..+++.++++++
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEE--EEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeE--EEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            358999999999999999999998876442 24444332  3333333  788999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHH-----HHHcCCcEEEeccCCCCCHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAF-----AERENTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      |+|+++..++..+..|+..+... ...+.|+++++||+|+.+.  ....+....     +...++.++++||++|+|+++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            99999999999998877666543 3367999999999999652  233222222     223456799999999999999


Q ss_pred             HHHHHHHHH
Q 027894          166 AFTEVLTQI  174 (217)
Q Consensus       166 ~~~~i~~~~  174 (217)
                      +|++|.+.+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=1e-28  Score=173.59  Aligned_cols=156  Identities=17%  Similarity=0.284  Sum_probs=121.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|||||||+++|.++.+..........     ........+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999998876554333221     1223345578999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccC---CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894           94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAV---STEDAKAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  169 (217)
                      |..++.++..+..|+..+..... ...|+++++||.|+.+....   .......+++..+++++++||++|+|++++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            99999999999888777765443 67899999999998653211   111122233445678999999999999999999


Q ss_pred             HHHHH
Q 027894          170 VLTQI  174 (217)
Q Consensus       170 i~~~~  174 (217)
                      |.+++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.93  E-value=4.4e-25  Score=157.46  Aligned_cols=156  Identities=21%  Similarity=0.350  Sum_probs=116.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+|+|.+|||||||+++|.+..+.... ++.+..  .......+  ..+.+||++|.+.....+..++..++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccc-ccccee--EEEEeecc--eEEEEeccccccccccchhhhhccceeeee
Confidence            4589999999999999999999998875433 222222  22222333  678999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHHH
Q 027894           92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~  165 (217)
                      ++|.++..+++....++....... ....|+++|+||+|+....  ...+.....     ...+++++++||++|+|+++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            999999999988766555544433 3789999999999986532  333333332     22456799999999999999


Q ss_pred             HHHHHHHHH
Q 027894          166 AFTEVLTQI  174 (217)
Q Consensus       166 ~~~~i~~~~  174 (217)
                      +|++|.+++
T Consensus       167 ~~~~L~~~l  175 (177)
T d1zj6a1         167 GLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=9.4e-25  Score=154.25  Aligned_cols=158  Identities=18%  Similarity=0.310  Sum_probs=120.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|+++.+.... ++.+  .........+  +.+.+||.+|.+.+...+...+..+++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            489999999999999999999999875433 3333  2233333444  6789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHH-hccCCCCCcEEEEEeCCCCCCcccC---CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894           93 YDVTRHVTFENVERWLKEL-RGHTDSNIVIMLVGNKADLRHLCAV---STEDAKAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      +|+.+..++.....+.... ........|+++++||.|+.+....   .......++...+++|+++||++|+|++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~  159 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAME  159 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence            9999988888776654443 3333477899999999999753221   11112223444567899999999999999999


Q ss_pred             HHHHHHH
Q 027894          169 EVLTQIY  175 (217)
Q Consensus       169 ~i~~~~~  175 (217)
                      +|.+.+.
T Consensus       160 ~l~~~l~  166 (169)
T d1upta_         160 WLVETLK  166 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.9e-24  Score=154.44  Aligned_cols=156  Identities=22%  Similarity=0.207  Sum_probs=107.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--------YRAITSAY   82 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~   82 (217)
                      +.-.|+|+|.+|||||||+++|++....... .+..+...........+  ..+.+|||||...        +.......
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccc
Confidence            3346999999999999999999998654322 22223333333444454  5689999999522        23334456


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCC
Q 027894           83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESM  161 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  161 (217)
                      +.++|++++|+|++++.+..+ ..|...+.... .+.|+++|+||+|+....   .+....+....+ ..++++||+++.
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~  156 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDER  156 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred             cccccceeeeechhhhhcccc-cchhhheeccc-cchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCC
Confidence            789999999999988755332 34445554433 578999999999985421   233344444444 568999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027894          162 NVENAFTEVLTQI  174 (217)
Q Consensus       162 ~v~~~~~~i~~~~  174 (217)
                      |+++++++|.+.+
T Consensus       157 gi~~L~~~i~~~l  169 (178)
T d1wf3a1         157 QVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999997654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.9e-24  Score=150.35  Aligned_cols=151  Identities=18%  Similarity=0.271  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|++|||||||+++|.++.+.. ..++.+....  .....  .....+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE--ELAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE--EECCT--TCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE--EeccC--CeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988753 3344443332  22233  3568999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHH------------HcCCcEEEeccCCCC
Q 027894           95 VTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAE------------RENTFFMETSALESM  161 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~  161 (217)
                      .++..++.....++........ .+.|++++++|.|+..  .....+......            ...+.++++||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999998888777666655443 7889999999999865  334343333221            123569999999999


Q ss_pred             CHHHHHHHHHH
Q 027894          162 NVENAFTEVLT  172 (217)
Q Consensus       162 ~v~~~~~~i~~  172 (217)
                      |++|+|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999865

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.4e-25  Score=154.34  Aligned_cols=151  Identities=21%  Similarity=0.219  Sum_probs=110.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCC-CCcccceeEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhHhhhc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--------YRAITSAYYR   84 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~   84 (217)
                      +||+++|.+|||||||+++|++...... ..+..+.......+...+  ..+.+||+||...        .......++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999999999998875432 223333333334444555  5688999999421        1223445678


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      .+|++++++|..+..+++....|...+.... .+.|+++|+||+|+..+....       .+..+.+++++||+++.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            9999999999999888777776665555544 679999999999985432211       11245789999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          165 NAFTEVLTQI  174 (217)
Q Consensus       165 ~~~~~i~~~~  174 (217)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.3e-24  Score=155.54  Aligned_cols=159  Identities=16%  Similarity=0.083  Sum_probs=107.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhhhcCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------YRAITSAYYRGA   86 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~   86 (217)
                      .+|+++|.+|||||||+|+|++...........+........ .......+.+|||||...       ........+..+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART   80 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhh
Confidence            359999999999999999999876544443333343333333 333335689999999321       112233456789


Q ss_pred             cEEEEEEeCCChh--hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           87 VGALLVYDVTRHV--TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        87 d~ii~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      +++++++|.....  ++.....++....... .++|+++|+||+|+....  ..++..+.....+.+++++||++|+|++
T Consensus        81 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2          81 RVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEE--AVKALADALAREGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHH--HHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhHH--HHHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence            9999999986543  2223333333322111 458999999999986532  2234455566678999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027894          165 NAFTEVLTQIYH  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      ++++.|.+.+..
T Consensus       158 ~L~~~i~~~l~~  169 (180)
T d1udxa2         158 ALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999988887753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2.7e-24  Score=155.45  Aligned_cols=155  Identities=19%  Similarity=0.233  Sum_probs=114.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|..|||||||+++|....++..     ++  ....+....  +.+.+||++|++.+...+..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~~--~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT-----GI--VETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC-----SE--EEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc-----cE--EEEEEEeee--eeeeeeccccccccccchhhcccCCceeeeE
Confidence            58999999999999999999988776432     22  223344444  7789999999999999999999999999999


Q ss_pred             EeCCChhhHH-----------HHHHHHHHHhccCCCCCcEEEEEeCCCCCCc---------------ccCCHHHHHHH--
Q 027894           93 YDVTRHVTFE-----------NVERWLKELRGHTDSNIVIMLVGNKADLRHL---------------CAVSTEDAKAF--  144 (217)
Q Consensus        93 ~d~~~~~s~~-----------~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~---------------~~~~~~~~~~~--  144 (217)
                      +|+++..++.           ....|...+......+.|+++++||+|+...               ......+....  
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            9999877652           2344555555554578999999999996211               11122222211  


Q ss_pred             ---HHH------cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          145 ---AER------ENTFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       145 ---~~~------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                         ...      ..+.+++|||++++|++++|+.+.+.+++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence               111      23457899999999999999999887765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.5e-24  Score=157.41  Aligned_cols=159  Identities=18%  Similarity=0.160  Sum_probs=122.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|..|||||||+++|....+.  +.+|.|.....  +.  ...+.+.+||++|++.+...+..+++.+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP--FD--LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEE--EE--CSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEE--Ee--ccceeeeeccccccccccccccccccccceeeEe
Confidence            589999999999999999999988873  55777765432  33  3347789999999999999999999999999999


Q ss_pred             EeCCChh-----------hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc----------------cCCHHHHHHHH
Q 027894           93 YDVTRHV-----------TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC----------------AVSTEDAKAFA  145 (217)
Q Consensus        93 ~d~~~~~-----------s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~----------------~~~~~~~~~~~  145 (217)
                      +|.++..           .++....|...+......+.|+++++||.|+...+                .........+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998754           34556778777776666889999999999984211                12233333332


Q ss_pred             HH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894          146 ER----------ENTFFMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       146 ~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                      ..          ..+.++++||++++|++++|+.+.+.+++.
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            21          234578999999999999999998888754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=3.6e-23  Score=147.81  Aligned_cols=159  Identities=17%  Similarity=0.150  Sum_probs=106.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCccc-----c--eeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTI-----G--VEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      ..++|+++|++|+|||||+|+|++.........+.     +  .......+...+  ..+.++|+||+..+.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            45799999999999999999998754322221111     1  111111222233  56889999999999888888899


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC--HHHHHHHHHH----cCCcEEEeccC
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--TEDAKAFAER----ENTFFMETSAL  158 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~----~~~~~~~~Sa~  158 (217)
                      .+|++++++|+.+....+..+.+ ..+..   .++|+++|+||+|+.......  .+....+.+.    .+.+++++||+
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~~~~-~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTGEHM-LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hccccccccccccccchhhhhhh-hhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            99999999999986554433322 33332   568999999999986532211  1222222222    24679999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027894          159 ESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~~~~  176 (217)
                      +|+|++++++.|.+.+.+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCc
Confidence            999999999999888764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.1e-23  Score=149.57  Aligned_cols=156  Identities=21%  Similarity=0.251  Sum_probs=100.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCc---------hhhhhhhHhhhc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------ERYRAITSAYYR   84 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~~~~   84 (217)
                      .|+++|.+|||||||+++|++....... .+..+.......+....  ..+.+||++|.         ..+.......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            6999999999999999999987653322 12212222222333334  56899999992         223344455678


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      .+|+++++++.+....... ..++..+..   .+.|+++|+||+|+..+  ...+...++.......++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~---~~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRK---STVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHH---HTCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-ccccccccc---ccccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            9999999999887655433 334444443   45899999999998542  12222223333334568999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027894          165 NAFTEVLTQIYHVV  178 (217)
Q Consensus       165 ~~~~~i~~~~~~~~  178 (217)
                      +++++|++.+.+..
T Consensus       154 ~L~~~i~~~l~e~~  167 (171)
T d1mkya1         154 TMLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCC
Confidence            99999999876544

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=7.5e-23  Score=146.52  Aligned_cols=157  Identities=20%  Similarity=0.264  Sum_probs=112.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ....||+++|.+|||||||+++|.+..+.... ++.+...  ..+...+  ..+.+||+.++..+...+..+.+..++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccce--eEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            34589999999999999999999998875433 3333332  2344555  45789999999988888999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHhc-cCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----------------cCCcE
Q 027894           91 LVYDVTRHVTFENVERWLKELRG-HTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----------------ENTFF  152 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  152 (217)
                      +++|.++...+.....++..... ....+.|+++++||.|+..  .....+.......                 .++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888877654444433 3337899999999999865  3444444444322                 12458


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 027894          153 METSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       153 ~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      +++||++|+|++|+|+||.+++
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=7.4e-22  Score=141.69  Aligned_cols=163  Identities=20%  Similarity=0.150  Sum_probs=107.2

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchh------------
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER------------   74 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------------   74 (217)
                      +.....+||+++|.+|+|||||+|+|++....... .+..+.......+..++  ..+.++|+||...            
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~   80 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKY   80 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCS
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccc
Confidence            33445799999999999999999999987643222 12222222233344555  4578889998432            


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----cC
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----EN  149 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~  149 (217)
                      ........++.+|++++|+|+..+..-+ ...++..+..   .+.|+|+|+||+|+.........+..+....     ..
T Consensus        81 ~~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          81 SNYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred             hhHHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCC
Confidence            2233444567899999999998764422 2333444433   5689999999999865444444444443332     23


Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          150 TFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       150 ~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                      .+++++||++|.|+++++++|.+.+..
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            579999999999999999999766544

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.3e-22  Score=147.17  Aligned_cols=158  Identities=21%  Similarity=0.282  Sum_probs=108.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|.   +...+.+|.|...  ..+....  ..+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999993   4445667777543  3344444  7789999999999999999999999999999


Q ss_pred             EeCCChhh----------HHHHHHHHHHHhc-cCCCCCcEEEEEeCCCCCCcc----------------cCCHHHHHHHH
Q 027894           93 YDVTRHVT----------FENVERWLKELRG-HTDSNIVIMLVGNKADLRHLC----------------AVSTEDAKAFA  145 (217)
Q Consensus        93 ~d~~~~~s----------~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~----------------~~~~~~~~~~~  145 (217)
                      +|.++..+          ++....++..+.. ....+.|+++++||+|+.++.                ....+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99997543          3334444444333 333789999999999984210                11223333332


Q ss_pred             HH-----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894          146 ER-----------ENTFFMETSALESMNVENAFTEVLTQIYHV  177 (217)
Q Consensus       146 ~~-----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  177 (217)
                      ..           ..+.+++|||+++++++++|+.+.+.+++.
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            22           125577899999999999999998877654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=2.3e-22  Score=140.99  Aligned_cols=149  Identities=21%  Similarity=0.264  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCC-CCcccceeEEEEEEEECCeEEEEEEEeCCCchh--------h-hhhhHhhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--------Y-RAITSAYY   83 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~-~~~~~~~~   83 (217)
                      +||+++|.+|||||||+|+|++...... ..+..+.......+...+  ..+.+|||||...        . .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6899999999999999999998764332 222223333334444555  5688999999311        1 11223346


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894           84 RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  163 (217)
                      ..+|++++|+|++++...+....+ ..+     ...++++++||+|+.+.  ...++.... ...+.+++++||++|+|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~~--~~~~~~~~~-~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEK--INEEEIKNK-LGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCC--CCHHHHHHH-HTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccch--hhhHHHHHH-hCCCCcEEEEECCCCCCH
Confidence            789999999999998765544332 222     45778999999999753  333333322 234678999999999999


Q ss_pred             HHHHHHHHHH
Q 027894          164 ENAFTEVLTQ  173 (217)
Q Consensus       164 ~~~~~~i~~~  173 (217)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=1.8e-22  Score=144.64  Aligned_cols=150  Identities=21%  Similarity=0.218  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc---------------hhhhhhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------------ERYRAIT   79 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------------~~~~~~~   79 (217)
                      .|+++|.+|||||||+|+|++........+..+.+  ...+...+    +.+|||||.               ..+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            58999999999999999999887644433333322  23333443    578999993               1112223


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHH----------HHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC
Q 027894           80 SAYYRGAVGALLVYDVTRHVTFENV----------ERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN  149 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~----------~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  149 (217)
                      ....+.+|++++|+|...+......          ..++..+..   .+.|+++|+||+|+....+   .....+.....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQ---EVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHH---HHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHH---HHHHHHHHHhc
Confidence            4456789999999998754332211          112233332   4689999999999754221   22222222222


Q ss_pred             -------CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894          150 -------TFFMETSALESMNVENAFTEVLTQIYH  176 (217)
Q Consensus       150 -------~~~~~~Sa~~~~~v~~~~~~i~~~~~~  176 (217)
                             ..++++||++|+|+++++++|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   248999999999999999999988764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=3.2e-22  Score=148.03  Aligned_cols=161  Identities=18%  Similarity=0.208  Sum_probs=105.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEE----------------ECCeEEEEEEEeCCCchhhhhhh
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIR----------------VEDKIVKAQIWDTAGQERYRAIT   79 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~Dt~G~~~~~~~~   79 (217)
                      |+|+|++++|||||+++|++...........+.........                +......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999988643322211111111111111                12223468999999999888877


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC-------------H-------H
Q 027894           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS-------------T-------E  139 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-------------~-------~  139 (217)
                      ...+..+|++++|+|+.++-..+.... +..+..   .+.|+|+|+||+|+.......             .       .
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQEA-LNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHHHH-HHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchhHH-HHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            778899999999999988655444333 333333   568999999999986422111             0       0


Q ss_pred             HHH----HHHHH--------------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894          140 DAK----AFAER--------------ENTFFMETSALESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       140 ~~~----~~~~~--------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      ...    .+...              ..++++++||++|.|++++++.|.....+...+
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            011    11110              114689999999999999999998877665543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2.9e-22  Score=143.78  Aligned_cols=157  Identities=18%  Similarity=0.093  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh----h---hhHhhhcCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR----A---ITSAYYRGA   86 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~~~~~~   86 (217)
                      .+|+++|.+|||||||+|+|++........+..+.........+.+ ...+.+|||||.....    .   .....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            4799999999999999999998775444333433443333333322 2357899999952211    1   112234568


Q ss_pred             cEEEEEEeCCChhhHHHH-----HHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH--cCCcEEEeccCC
Q 027894           87 VGALLVYDVTRHVTFENV-----ERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER--ENTFFMETSALE  159 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~-----~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~  159 (217)
                      +.++++++..........     .............++|+++|+||+|+.+..    +....+.+.  .+.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCC
Confidence            889888887654332211     111222222222578999999999986522    233334333  367899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027894          160 SMNVENAFTEVLTQIY  175 (217)
Q Consensus       160 ~~~v~~~~~~i~~~~~  175 (217)
                      |.|++++++.|.+.+.
T Consensus       157 g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         157 REGLRELLFEVANQLE  172 (185)
T ss_dssp             SSTTHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999988763

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2e-20  Score=136.44  Aligned_cols=116  Identities=17%  Similarity=0.267  Sum_probs=85.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEEEE
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-AITSAYYRGAVGALLVY   93 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~ii~v~   93 (217)
                      +|+++|++|||||||+++|+++.+.... ++.+.+.....+ .....+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999998876654 454444443333 24445789999999998875 56778889999999999


Q ss_pred             eCCChhhH-HHHHHHHHHH-hc--cCCCCCcEEEEEeCCCCCC
Q 027894           94 DVTRHVTF-ENVERWLKEL-RG--HTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        94 d~~~~~s~-~~~~~~~~~l-~~--~~~~~~p~iiv~nK~D~~~  132 (217)
                      |+++..++ .+...++..+ ..  ....++|++||+||+|+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            99997653 3443333333 21  1225689999999999975

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=7.2e-21  Score=137.54  Aligned_cols=157  Identities=17%  Similarity=0.149  Sum_probs=94.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------h---hhh
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------E---RYR   76 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~---~~~   76 (217)
                      .+...+|+|+|.+|||||||+|+|++...........+.+..........   .+.+.|++|.          +   .+.
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHH
Confidence            34456999999999999999999998653222222222222222222332   2455666651          1   111


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH----cCCcE
Q 027894           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER----ENTFF  152 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~  152 (217)
                      ......+..+|++++++|+..+..-. ...+++.+..   .++|+++|+||+|+.+..... +....+.+.    .+.++
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~~-~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSND-DVQMYEFLKY---YGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH---TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEE
T ss_pred             hhhhccccchhhhhhhhhcccccccc-cccccccccc---ccCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCE
Confidence            22334456789999999998764322 2344455544   468999999999985433221 222222222    44679


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 027894          153 METSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       153 ~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      +.+||++++|+++++++|.+.+
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998775

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.85  E-value=1.3e-20  Score=136.11  Aligned_cols=163  Identities=21%  Similarity=0.199  Sum_probs=106.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-----CcccceeEEEEEEEE-------------------CCeEEEEE
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-----KSTIGVEFATRSIRV-------------------EDKIVKAQ   65 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~-------------------~~~~~~~~   65 (217)
                      ....++|+++|+.++|||||+++|++.......     ..+....+.......                   ......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            456789999999999999999999874322111     011111111111110                   11235689


Q ss_pred             EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHHHH
Q 027894           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDAKA  143 (217)
Q Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~  143 (217)
                      ++||||+..|.......+..+|++++|+|+.++...+.....+..+...  ...++++++||+|+.+....  ......+
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~--~~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh--cCccceeeeecccchhhHHHHHHHHHHHH
Confidence            9999999999988888889999999999998864323333333333322  23457888999998653221  1223334


Q ss_pred             HHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          144 FAERE---NTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       144 ~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      +....   +++++++||++|+|++++++.|.+++
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            44332   36799999999999999999887754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=3.5e-21  Score=141.79  Aligned_cols=159  Identities=18%  Similarity=0.218  Sum_probs=114.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|..|||||||+++|....+.    +|.|..  ...+.+++  +.+.+||++|++.++..|..++..++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~----pTiG~~--~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIF--ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC----CCCSCE--EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC----CCCCeE--EEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            4689999999999999999999776543    565543  44455565  778999999999999999999999999999


Q ss_pred             EEeCCChhh----------HHH-HHHHHHHHhccCCCCCcEEEEEeCCCCCCccc----C--------------------
Q 027894           92 VYDVTRHVT----------FEN-VERWLKELRGHTDSNIVIMLVGNKADLRHLCA----V--------------------  136 (217)
Q Consensus        92 v~d~~~~~s----------~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----~--------------------  136 (217)
                      ++|.++...          +.+ ...|...+......++|++|++||+|+.+++.    .                    
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            999986432          222 33344444433337899999999999842110    0                    


Q ss_pred             ------CHHHHHHHHH-----H--------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894          137 ------STEDAKAFAE-----R--------ENTFFMETSALESMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       137 ------~~~~~~~~~~-----~--------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  178 (217)
                            ...++..+..     .        ..+..++|||.+..+++.+|+.+.+.+++..
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                  0122222221     1        1234678999999999999999887777543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=9.3e-20  Score=132.60  Aligned_cols=162  Identities=21%  Similarity=0.198  Sum_probs=102.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-----cccceeEEEEEEEE------------------------CCeE
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-----STIGVEFATRSIRV------------------------EDKI   61 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-----~~~~~~~~~~~~~~------------------------~~~~   61 (217)
                      .+.++|+++|+.++|||||+++|++........     .+.........+..                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            456899999999999999999998632211110     00000011111101                        0122


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC--HH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--TE  139 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~  139 (217)
                      .++.++|+||+..|.......+..+|++++|+|+.+.-.-......+..+...  ...|+|+++||+|+.+..+..  ..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHHHHHH
Confidence            46899999999999888888889999999999998863222222222223221  235788899999996532211  12


Q ss_pred             HHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          140 DAKAFAER---ENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       140 ~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      +...+...   .+++++++||++|.|++++++.|.+++
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            22222222   247899999999999999999888764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.83  E-value=1.1e-20  Score=136.13  Aligned_cols=157  Identities=18%  Similarity=0.105  Sum_probs=106.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc----------------CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNE----------------FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      +.++|+++|+.++|||||+++|+...                ...+  ...+++.......+......+.++||||+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~E--r~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEE--RARGITINAAHVEYSTAARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEE--EETTEEEECEEEEEECSSCEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhh--cCCCccCCcceEEEEeceeeEEeecCcchHHH
Confidence            45899999999999999999997521                1111  12233333443444444467899999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC---CHHHHHHHHHHcC---
Q 027894           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV---STEDAKAFAEREN---  149 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~---  149 (217)
                      .......+..+|++++|+|+.+...-+..+.|... ...  ...|+|+++||+|+..+.+.   -..+...+....+   
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a-~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLA-RQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHH-HHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHH-HHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            88888889999999999999987544333333322 221  23578899999998643221   1123444444443   


Q ss_pred             --CcEEEeccCCC----------CCHHHHHHHHHHH
Q 027894          150 --TFFMETSALES----------MNVENAFTEVLTQ  173 (217)
Q Consensus       150 --~~~~~~Sa~~~----------~~v~~~~~~i~~~  173 (217)
                        ++++++|+++|          .++.++++.|.++
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence              67999999987          4778777776554

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=4.5e-19  Score=126.10  Aligned_cols=156  Identities=22%  Similarity=0.194  Sum_probs=99.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEE-EEEEEECCeEEEEEEEeCCCchhh---------hhhhHh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFA-TRSIRVEDKIVKAQIWDTAGQERY---------RAITSA   81 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~   81 (217)
                      +--.|+++|.+|||||||+|+|++...........+.... ......+.  ..+..||++|....         ......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            4456999999999999999999987654433222222222 22333344  34677888884221         111122


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCC
Q 027894           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALES  160 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  160 (217)
                      ....+++++++.|..+...  ....+...+..   ...|.++|+||.|..............+..+.+ .+++++||++|
T Consensus        82 ~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  156 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTP--DDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  156 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCH--HHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             chhhcceeEEEEecCccch--hHHHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence            2346788888888776432  22333333333   457789999999986543333344445555555 57999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027894          161 MNVENAFTEVLTQI  174 (217)
Q Consensus       161 ~~v~~~~~~i~~~~  174 (217)
                      .|++++++.|.+++
T Consensus       157 ~gi~~L~~~i~~~l  170 (179)
T d1egaa1         157 LNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999987764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=2.1e-19  Score=130.34  Aligned_cols=141  Identities=18%  Similarity=0.125  Sum_probs=94.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcC------CCC-----------CCcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEF------SLE-----------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER   74 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      +.++|+++|+.++|||||+++|+...-      ...           .....+++.....+.+.+  .++.++||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            458999999999999999999964210      000           001223333444444444  5789999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC---CHHHHHHHHHHcC-
Q 027894           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV---STEDAKAFAEREN-  149 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~-  149 (217)
                      |.......+..+|++++|+|+.++-..+..+.|.....    .++| +++++||+|+.+..+.   ...++..+....+ 
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            99888889999999999999998776655554433333    4555 6778999998543221   1233344444433 


Q ss_pred             ----CcEEEeccC
Q 027894          150 ----TFFMETSAL  158 (217)
Q Consensus       150 ----~~~~~~Sa~  158 (217)
                          ++++..|+.
T Consensus       156 ~~~~i~~i~~sa~  168 (204)
T d2c78a3         156 PGDEVPVIRGSAL  168 (204)
T ss_dssp             CTTTSCEEECCHH
T ss_pred             Ccccceeeeeech
Confidence                458888875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.79  E-value=2e-18  Score=126.35  Aligned_cols=151  Identities=24%  Similarity=0.229  Sum_probs=100.3

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC---------------------------------CCCcccceeEEEEE
Q 027894            8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---------------------------------ESKSTIGVEFATRS   54 (217)
Q Consensus         8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~   54 (217)
                      -+....+||+++|+.++|||||+.+|+...-..                                 ......+.+.....
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            345578999999999999999999996421100                                 00011222222223


Q ss_pred             EEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCC-cEEEEEeCCCCCCc
Q 027894           55 IRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNI-VIMLVGNKADLRHL  133 (217)
Q Consensus        55 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p~iiv~nK~D~~~~  133 (217)
                      +...+  .++.++|+||+..|.......+..+|++++|+|+.+...-+..+.+... ..   .++ .+|+++||+|+.+.
T Consensus        84 ~~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~-~~---~gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          84 FSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIA-SL---LGIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             EECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHH-HH---TTCCEEEEEEECTTTTTS
T ss_pred             Eeccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHH-HH---cCCCEEEEEEEccccccc
Confidence            32333  5789999999999999998899999999999999887554444433222 22   344 47889999999753


Q ss_pred             ccCC----HHHHHHHHHHcC-----CcEEEeccCCCCCHH
Q 027894          134 CAVS----TEDAKAFAEREN-----TFFMETSALESMNVE  164 (217)
Q Consensus       134 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~  164 (217)
                      .+..    ..++..+.+..+     ++++++||++|.|+.
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            2221    233445555554     358999999999873

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=5.8e-18  Score=123.15  Aligned_cols=115  Identities=18%  Similarity=0.257  Sum_probs=80.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhh----hcCCc
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAY----YRGAV   87 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~~~d   87 (217)
                      +..+|+++|++|||||||+|+|+++.+.+.    .+.......  +......+.+||+||++.+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSCEEE--TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecceEEE--EEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            456899999999999999999999876532    222222222  33333567999999988766555444    34568


Q ss_pred             EEEEEEeCCC-hhhHHHHHHHH----HHHhccCCCCCcEEEEEeCCCCCC
Q 027894           88 GALLVYDVTR-HVTFENVERWL----KELRGHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        88 ~ii~v~d~~~-~~s~~~~~~~~----~~l~~~~~~~~p~iiv~nK~D~~~  132 (217)
                      .+++++|..+ ..+++....|+    ..+......+.|+++|+||+|+.+
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  125 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccc
Confidence            8899999774 55555555444    333344457899999999999865

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.2e-17  Score=117.80  Aligned_cols=164  Identities=16%  Similarity=0.095  Sum_probs=86.4

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc-------hhhhhhh
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ-------ERYRAIT   79 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~~~~~   79 (217)
                      +.+.+..++|+++|.+|||||||+|+|++...........+................+..++.++.       .......
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHH
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhh
Confidence            445777899999999999999999999987654433222222222222222222222222222221       1111111


Q ss_pred             ---HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC--HHHHHHHHHHc--CCcE
Q 027894           80 ---SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--TEDAKAFAERE--NTFF  152 (217)
Q Consensus        80 ---~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~~  152 (217)
                         .......+.++.+.+......... ..++..+..   ...++++++||+|+.+.....  .+...+.....  ..++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  165 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             hhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcE
Confidence               112234455566666655443322 333344433   457889999999986422111  12222222222  3568


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 027894          153 METSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       153 ~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      +++||++|.|++++++.|.+.+
T Consensus       166 i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         166 ETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999887654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=2.1e-16  Score=118.45  Aligned_cols=112  Identities=18%  Similarity=0.224  Sum_probs=82.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC------------------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSL------------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      -+|+++|+.++|||||+.+++...-..                  ......++......+.+.+  .++.++||||+..|
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSSC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhhh
Confidence            379999999999999999986521111                  0111222333334444555  67899999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      .......++.+|++++|+|+.++-..+....|... ..   .++|.++++||+|..
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a-~~---~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK---YKVPRIAFANKMDKT  136 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHH-HT---TTCCEEEEEECTTST
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHHHHHH-HH---cCCCEEEEEeccccc
Confidence            98899999999999999999998766655555333 32   679999999999973

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.72  E-value=3.9e-16  Score=116.75  Aligned_cols=112  Identities=19%  Similarity=0.207  Sum_probs=83.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCC------------------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLE------------------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      -+|+++|+.++|||||+.+|+...-...                  .....++......+.+.+  .++.++||||+..|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            3699999999999999999864221110                  011223444444555565  57899999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      .......++.+|++++|+|+.++-..+....|.....    .++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhh----ccccccccccccccc
Confidence            9889899999999999999998776665555543333    578999999999963

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=6e-17  Score=119.76  Aligned_cols=148  Identities=16%  Similarity=0.133  Sum_probs=98.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc--CC---------------C--------------CCCcccceeEEEEEEEECCe
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNE--FS---------------L--------------ESKSTIGVEFATRSIRVEDK   60 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~--~~---------------~--------------~~~~~~~~~~~~~~~~~~~~   60 (217)
                      ..++|+++|+.++|||||+.+|+...  ..               .              ......+++.....+.+.+ 
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC-
Confidence            45899999999999999999986311  00               0              0112223333344444444 


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh-------HHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCC
Q 027894           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT-------FENVERWLKELRGHTDSNIV-IMLVGNKADLRH  132 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-------~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~  132 (217)
                       .++.++||||+..|.......+..+|++++|+|+....-       .+..+.|+.. ..   .++| +|+++||+|+.+
T Consensus        84 -~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~-~~---~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          84 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGT
T ss_pred             -EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHH-HH---cCCCeEEEEEECCCCCC
Confidence             689999999999999999999999999999999986521       1222333222 21   3454 788999999865


Q ss_pred             cccCC----HHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Q 027894          133 LCAVS----TEDAKAFAEREN-----TFFMETSALESMNVEN  165 (217)
Q Consensus       133 ~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  165 (217)
                      ..+..    ..+...+....+     ++++++|+..+.|+-+
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            32221    233444554444     5689999999988644

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.66  E-value=2.6e-16  Score=115.57  Aligned_cols=149  Identities=15%  Similarity=0.133  Sum_probs=92.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcC-------------------------------CCCCCcccceeEEEEEEEECCeE
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEF-------------------------------SLESKSTIGVEFATRSIRVEDKI   61 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   61 (217)
                      .++|+++|+.++|||||+.+|+...-                               ........+.......+...  .
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~--~   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK--K   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS--S
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecC--C
Confidence            68999999999999999999853110                               00111112222222233333  3


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHH------HHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFE------NVERWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~------~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      ..+.++||||+..|.......+.-+|++++|+|+.+...-+      .....+......  ...++|+++||+|+.....
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCccc
Confidence            67899999999999999999999999999999999863211      111111111111  2346788999999864221


Q ss_pred             C------CHHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Q 027894          136 V------STEDAKAFAEREN-----TFFMETSALESMNVEN  165 (217)
Q Consensus       136 ~------~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  165 (217)
                      .      ...+...+...++     ++++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            1      1122334444433     4689999999998753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.64  E-value=7e-16  Score=114.47  Aligned_cols=153  Identities=20%  Similarity=0.134  Sum_probs=82.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-------------------------------CCCCcccceeEEEEEEEECC
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFS-------------------------------LESKSTIGVEFATRSIRVED   59 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   59 (217)
                      ...++|+++|+.++|||||+.+|+...-.                               .......+++.....+.+  
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~--   99 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET--   99 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc--
Confidence            35789999999999999999999531100                               000011111111112222  


Q ss_pred             eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHH------HHHHHHHHHhccCCCCC-cEEEEEeCCCCCC
Q 027894           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFE------NVERWLKELRGHTDSNI-VIMLVGNKADLRH  132 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~------~~~~~~~~l~~~~~~~~-p~iiv~nK~D~~~  132 (217)
                      ...++.++||||+..|..........+|++++|+|+.+..--.      .....+..+..   .++ ++++++||+|+..
T Consensus       100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPS  176 (245)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTT
T ss_pred             ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH---cCCCeEEEEEEcCCCCc
Confidence            2257899999999999988888899999999999998753110      11222222222   234 4788999999864


Q ss_pred             ccc--CCH----HHHHHHHHHc-------CCcEEEeccCCCCCHHHHHH
Q 027894          133 LCA--VST----EDAKAFAERE-------NTFFMETSALESMNVENAFT  168 (217)
Q Consensus       133 ~~~--~~~----~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~~  168 (217)
                      ...  ...    ++...+....       .++++++||++|+|+.++++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            221  111    1222222222       25799999999999976543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.7e-14  Score=114.34  Aligned_cols=159  Identities=11%  Similarity=0.123  Sum_probs=90.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcc---cceeEEEEEEEECCeEEEEEEEeCCCchhhhh-----hhHhhhc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKST---IGVEFATRSIRVEDKIVKAQIWDTAGQERYRA-----ITSAYYR   84 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~   84 (217)
                      .++|+|+|.+|+|||||+|+|.+..........   .+++.....+...+ .-.+.+|||||-.....     .....+.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            589999999999999999999986542221111   11111112222221 12478999999532211     1222356


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC-------cccCCHHH----H----HHHHHHcC
Q 027894           85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH-------LCAVSTED----A----KAFAEREN  149 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-------~~~~~~~~----~----~~~~~~~~  149 (217)
                      .+|.++++.|..-..  .+ ..+...+..   .++|+++|.||+|...       ......+.    .    .......+
T Consensus       135 ~~d~~l~~~~~~~~~--~d-~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~  208 (400)
T d1tq4a_         135 EYDFFIIISATRFKK--ND-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  208 (400)
T ss_dssp             GCSEEEEEESSCCCH--HH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cceEEEEecCCCCCH--HH-HHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC
Confidence            788888887643222  22 233344443   4689999999999631       11112221    1    12222333


Q ss_pred             ---CcEEEeccCC--CCCHHHHHHHHHHHHHHHh
Q 027894          150 ---TFFMETSALE--SMNVENAFTEVLTQIYHVV  178 (217)
Q Consensus       150 ---~~~~~~Sa~~--~~~v~~~~~~i~~~~~~~~  178 (217)
                         .++|.+|..+  ..++.++.+.+.+.+.+..
T Consensus       209 ~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         209 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence               3478888765  4588888888877766544

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.55  E-value=6.3e-14  Score=104.70  Aligned_cols=124  Identities=15%  Similarity=0.030  Sum_probs=76.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCch-------hhhhhhHh-
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQE-------RYRAITSA-   81 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~~-   81 (217)
                      ...++|+++|.+|+|||||+|.+++........ +..+...........+  ..+.++||||..       ........ 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            456999999999999999999999987544332 2223334444455666  568999999932       11111111 


Q ss_pred             -hhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCC
Q 027894           82 -YYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVS  137 (217)
Q Consensus        82 -~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~  137 (217)
                       .....++++||++++... +-. ....+..+....+  --.++++|+||+|........
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~-~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNL-DKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHH-HHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence             224568899999887542 221 1222233322222  225789999999986544444

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=1.6e-14  Score=111.31  Aligned_cols=115  Identities=21%  Similarity=0.224  Sum_probs=83.0

Q ss_pred             ee-EEEEEcCCCCChHHHHHHHhhCcCCC----------------CCCcccceeEEEEEEEE--------------CCeE
Q 027894           13 LY-KVVLIGDSGVGKSNLLSRFTRNEFSL----------------ESKSTIGVEFATRSIRV--------------EDKI   61 (217)
Q Consensus        13 ~~-~I~vvG~~~~GKtsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~~~   61 (217)
                      .+ +|+++|+.++|||||+.+|+...-..                +.....++......+.+              .+..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            35 59999999999999999996321100                01111122222222211              3356


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~  131 (217)
                      ..+.++||||+..|.......++-+|++++|+|+.++-..+....|.....    .+.|.++++||+|..
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH----cCCCeEEEEECcccc
Confidence            789999999999999888889999999999999999877776666655554    679999999999974

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.43  E-value=8.1e-14  Score=103.09  Aligned_cols=113  Identities=13%  Similarity=-0.101  Sum_probs=65.0

Q ss_pred             EEEEEEeCCCchhhhhhhHh---h--hcCCcEEEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894           62 VKAQIWDTAGQERYRAITSA---Y--YRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLCA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~---~--~~~~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~  135 (217)
                      ..+.++|+||+..+......   .  ....+.+++++|+.....-.... ..+........-..|.++|+||+|+.....
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~  174 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE  174 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHH
Confidence            35889999998665332222   1  12456889999986432222111 111111111113588999999999864221


Q ss_pred             CCH-----------------------HHHH---HHHH--HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894          136 VST-----------------------EDAK---AFAE--RENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       136 ~~~-----------------------~~~~---~~~~--~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  174 (217)
                      ...                       ....   ....  ...++++++||++|+|+++++..|.++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            100                       0000   0011  1347899999999999999999887764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.39  E-value=8.8e-13  Score=101.14  Aligned_cols=108  Identities=10%  Similarity=0.044  Sum_probs=65.5

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  141 (217)
                      +.+.+++|.|...-...   ...-+|.+++|..+..++..+.++.-   +..     ..-++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~g---ilE-----~aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKG---IFE-----LADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTT---HHH-----HCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhh---Hhh-----hhheeeEeccccccchHHHHHHH
Confidence            46788888885322221   33459999999998877654433221   111     22388999999865332222221


Q ss_pred             HHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894          142 KAFAER----------ENTFFMETSALESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       142 ~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      ..+...          +..+++.+||++++|+++++++|.++.......
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~  261 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTAT  261 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHC
Confidence            122111          346799999999999999999998877655443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.1e-12  Score=100.66  Aligned_cols=106  Identities=14%  Similarity=0.098  Sum_probs=61.6

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC--HHH
Q 027894           63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--TED  140 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~  140 (217)
                      .+.+++|.|...-.   ..+...+|.+++|.++...+..+.++..+..+        +-++|+||+|+.......  ..+
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~--------aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV--------ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH--------CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc--------ccEEEEEeecccchHHHHHHHHH
Confidence            46677776642211   12456689999999876665544443333222        237889999986422111  112


Q ss_pred             HHHHHH-------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 027894          141 AKAFAE-------RENTFFMETSALESMNVENAFTEVLTQIYHVVS  179 (217)
Q Consensus       141 ~~~~~~-------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~  179 (217)
                      ......       .+..+++.+||.+|+|++++++.|.++......
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~~  262 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA  262 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence            222222       133579999999999999999999887665444

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.32  E-value=1.3e-11  Score=93.03  Aligned_cols=84  Identities=20%  Similarity=0.178  Sum_probs=54.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCe---------------EEEEEEEeCCCch----
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK---------------IVKAQIWDTAGQE----   73 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~----   73 (217)
                      .++|++||.|+||||||++++++........+..+++...-.+.+.+.               ...+.++|+||.-    
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999998765544454444444444444332               1258899999931    


Q ss_pred             hhhhhh---HhhhcCCcEEEEEEeCC
Q 027894           74 RYRAIT---SAYYRGAVGALLVYDVT   96 (217)
Q Consensus        74 ~~~~~~---~~~~~~~d~ii~v~d~~   96 (217)
                      .-..+.   ...++.+|++++|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence            111222   33468899999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=1.6e-10  Score=87.86  Aligned_cols=119  Identities=17%  Similarity=0.203  Sum_probs=72.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCcccceeEEEEEEEEC----------C----------------------
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRVE----------D----------------------   59 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~----------~----------------------   59 (217)
                      ..+|+|+|..++|||||||+|++..+.+. ..+++............          +                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            56899999999999999999999887443 32322111111111000          0                      


Q ss_pred             -----------------eEEEEEEEeCCCch-------------hhhhhhHhhhcCCcE-EEEEEeCCChhhHHHHHHHH
Q 027894           60 -----------------KIVKAQIWDTAGQE-------------RYRAITSAYYRGAVG-ALLVYDVTRHVTFENVERWL  108 (217)
Q Consensus        60 -----------------~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~  108 (217)
                                       ....+.++|+||-.             ....+...|+.+.+. +++|.+.....+-.....+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             00137899999931             123445666777765 55566666554444444555


Q ss_pred             HHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894          109 KELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus       109 ~~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                      ..+..   ...++++|+||+|..++.
T Consensus       186 ~~~~~---~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         186 KEVDP---QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHCT---TCSSEEEEEECGGGSCTT
T ss_pred             HHhCc---CCCceeeEEeccccccch
Confidence            55532   446799999999986543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.13  E-value=2.2e-10  Score=87.33  Aligned_cols=117  Identities=18%  Similarity=0.228  Sum_probs=69.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEE-------------------------------------
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRS-------------------------------------   54 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~-------------------------------------   54 (217)
                      ..+|+|+|..++|||||||+|++..+.+... +++........                                     
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            4689999999999999999999988744322 21111111100                                     


Q ss_pred             ---------------------EEECCeEEEEEEEeCCCch-------------hhhhhhHhhhcCCcEEEEEE-eCCChh
Q 027894           55 ---------------------IRVEDKIVKAQIWDTAGQE-------------RYRAITSAYYRGAVGALLVY-DVTRHV   99 (217)
Q Consensus        55 ---------------------~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~-d~~~~~   99 (217)
                                           +.... ...+.++||||..             ....+...|+.+++.+++++ +.....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~  182 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHhcCCCCcccccceEEEecCCC-CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccc
Confidence                                 00000 1246799999932             12355677888999866665 443322


Q ss_pred             hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894          100 TFENVERWLKELRGHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus       100 s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  133 (217)
                      .-.....+...+..   ...++++|+||+|....
T Consensus       183 ~~~~~~~~~~~~~~---~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         183 ANSDALQLAKEVDP---EGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             TTCSHHHHHHHHCS---SCSSEEEEEECTTSSCS
T ss_pred             cccHHHHHHHHhCc---CCCeEEEEEeccccccc
Confidence            22233344444432   44679999999998643

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=1e-10  Score=89.78  Aligned_cols=84  Identities=19%  Similarity=0.155  Sum_probs=45.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEE---E-------------------ECCeEEEEEEEeCCC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI---R-------------------VEDKIVKAQIWDTAG   71 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~l~Dt~G   71 (217)
                      ++|+++|.|+||||||+|+|++........+..|++...-..   .                   .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            489999999999999999999987654444443333211111   0                   012336789999999


Q ss_pred             chhh-------hhhhHhhhcCCcEEEEEEeCCC
Q 027894           72 QERY-------RAITSAYYRGAVGALLVYDVTR   97 (217)
Q Consensus        72 ~~~~-------~~~~~~~~~~~d~ii~v~d~~~   97 (217)
                      --..       .......++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            4211       1111223578999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.05  E-value=3.6e-10  Score=85.71  Aligned_cols=86  Identities=16%  Similarity=0.171  Sum_probs=58.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCe---------------EEEEEEEeCCCchh-
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDK---------------IVKAQIWDTAGQER-   74 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~-   74 (217)
                      ..++|+++|.|+||||||++++++.... ....|..|++...-.+.+.+.               ...+.++|+||... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            4589999999999999999999987642 333344445544444444432               24688999998311 


Q ss_pred             ------hhhhhHhhhcCCcEEEEEEeCCC
Q 027894           75 ------YRAITSAYYRGAVGALLVYDVTR   97 (217)
Q Consensus        75 ------~~~~~~~~~~~~d~ii~v~d~~~   97 (217)
                            ....-...++.+|++++|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  11223334689999999999865

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=4.4e-09  Score=78.64  Aligned_cols=60  Identities=22%  Similarity=0.393  Sum_probs=38.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894            9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus         9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      .....++|+|+|.||||||||+|+|.+....... ...|.+.....+..+.   .+.++||||.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEECCC---CeEEecCCCc
Confidence            3456799999999999999999999998764433 4445555555554443   3899999993

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=2e-07  Score=66.87  Aligned_cols=85  Identities=18%  Similarity=0.120  Sum_probs=62.1

Q ss_pred             hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH--cCCcEEEecc
Q 027894           81 AYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER--ENTFFMETSA  157 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa  157 (217)
                      ....+.|.+++|+++.+|. +...+++++.....   .+++.+||+||+|+.++.  ..+....+...  .+.+++.+|+
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~--~~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDED--DLRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH--HHHHHHHHHHHHTTTSCEEECCT
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHH--HHHHHHHhhcccccceeEEEecc
Confidence            3467899999999988764 56677888777665   578999999999996522  12223333332  3467899999


Q ss_pred             CCCCCHHHHHHHH
Q 027894          158 LESMNVENAFTEV  170 (217)
Q Consensus       158 ~~~~~v~~~~~~i  170 (217)
                      +++.|++++...+
T Consensus        81 ~~~~g~~~L~~~l   93 (225)
T d1u0la2          81 KTGMGIEELKEYL   93 (225)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             ccchhHhhHHHHh
Confidence            9999999987655

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.46  E-value=1.4e-06  Score=60.04  Aligned_cols=24  Identities=29%  Similarity=0.700  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      +||+++|++|+|||||++.+++..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcC
Confidence            489999999999999999998743

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.35  E-value=9.5e-08  Score=68.55  Aligned_cols=58  Identities=22%  Similarity=0.197  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCC------cccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESK------STIGVEFATRSIRVEDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ..+++|++|||||||||+|.+........      ...-++.....+.+.+.   -.++||||...+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            46899999999999999998764322111      11112222333444332   379999996544

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=4e-07  Score=64.68  Aligned_cols=90  Identities=12%  Similarity=0.055  Sum_probs=52.2

Q ss_pred             EEEEEEeCCCchhhhh----hh---Hhhhc-----CCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCC
Q 027894           62 VKAQIWDTAGQERYRA----IT---SAYYR-----GAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKA  128 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~----~~---~~~~~-----~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~  128 (217)
                      ..+.++||+|......    ..   ....+     ..+-+++|+|+.... ....+..++..+       -+--+++||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------CCceEEEeec
Confidence            3689999999422211    11   11122     245789999987543 333333333332       1235679999


Q ss_pred             CCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894          129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus       129 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      |...    ..-.+..++...+.|+.+++  .|++++
T Consensus       165 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         165 DGTA----KGGVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             TTCT----TTTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            9633    33556677778899987777  455553

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=1.7e-06  Score=64.30  Aligned_cols=94  Identities=12%  Similarity=0.074  Sum_probs=66.3

Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccC
Q 027894           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSAL  158 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                      ....+..+|++++|+|+.+|-+..+  ..+..+.    .++|.|+|+||+|+.+..  ..++..++....+...+.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeecc
Confidence            4556889999999999988765432  1222222    368999999999986522  1222333445567889999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhc
Q 027894          159 ESMNVENAFTEVLTQIYHVVSR  180 (217)
Q Consensus       159 ~~~~v~~~~~~i~~~~~~~~~~  180 (217)
                      ++.+..++...+.+.+.+...+
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~  102 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFDR  102 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhhhhhhh
Confidence            9999999888887777665543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.22  E-value=6e-07  Score=63.87  Aligned_cols=92  Identities=16%  Similarity=0.052  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCchhhh------hhhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894           62 VKAQIWDTAGQERYR------AITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~------~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~  133 (217)
                      ..+.++||+|...+.      .....+  .-..+-+++|++++....  .+.........   .+. --+++||.|..  
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~---~~~-~~lI~TKlDet--  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQA---SKI-GTIIITKMDGT--  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHH---CTT-EEEEEECTTSC--
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhhcc---cCc-ceEEEecccCC--
Confidence            368999999943221      111111  124567899999876532  22222222222   122 24669999963  


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894          134 CAVSTEDAKAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (217)
                        ...-.+..+....+.|+.+++  .|+++++
T Consensus       167 --~~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         167 --AKGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             --SCHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             --CcccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence              356777888888999987777  3555543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=2.4e-06  Score=60.72  Aligned_cols=91  Identities=18%  Similarity=0.005  Sum_probs=51.2

Q ss_pred             EEEEEEeCCCchhhhh----hhHhhh---c-----CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894           62 VKAQIWDTAGQERYRA----ITSAYY---R-----GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~----~~~~~~---~-----~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D  129 (217)
                      .++.++||+|...+..    ....+.   .     ..+-.++|+|++...  +.+..........    -+--+++||.|
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lI~TKlD  167 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV----NVTGIILTKLD  167 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS----CCCEEEEECGG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc----CCceEEEeccc
Confidence            3689999999422211    111111   1     146789999986542  3333333333221    12356799999


Q ss_pred             CCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894          130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  164 (217)
                      ...    ..-.+..++...+.|+.+++  +|+.++
T Consensus       168 e~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~  196 (213)
T d1vmaa2         168 GTA----KGGITLAIARELGIPIKFIG--VGEKAE  196 (213)
T ss_dssp             GCS----CTTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCC----cccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            632    33456677777889977776  355553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=2.9e-07  Score=66.17  Aligned_cols=87  Identities=13%  Similarity=0.063  Sum_probs=63.1

Q ss_pred             hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC--HHHHHHHHHHcCCcEEEecc
Q 027894           81 AYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--TEDAKAFAERENTFFMETSA  157 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ....+.|.+++|+++.+|. ++..+++++.....   .+++.+||+||+|+.+..+..  .....+.....+.+++.+|+
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeec
Confidence            3457899999999998764 56778888777665   678899999999996532111  11222334556899999999


Q ss_pred             CCCCCHHHHHHHH
Q 027894          158 LESMNVENAFTEV  170 (217)
Q Consensus       158 ~~~~~v~~~~~~i  170 (217)
                      .++.|++++...+
T Consensus        83 ~~~~gl~~L~~~l   95 (231)
T d1t9ha2          83 KDQDSLADIIPHF   95 (231)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CChhHHHHHHHhh
Confidence            9999988876544

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.19  E-value=8.8e-07  Score=62.88  Aligned_cols=85  Identities=16%  Similarity=0.065  Sum_probs=49.7

Q ss_pred             EEEEEEeCCCchhhh----hhhHhh--hcCCcEEEEEEeCCChhh-HHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894           62 VKAQIWDTAGQERYR----AITSAY--YRGAVGALLVYDVTRHVT-FENVERWLKELRGHTDSNIVIMLVGNKADLRHLC  134 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~  134 (217)
                      .++.++||+|.....    ..+..+  ..+.+-+++|.|...+.. .+.+..++..+.      . -=+++||.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~------~-~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG------V-TGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC------C-CEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC------C-CeeEEeecCccc--
Confidence            468999999942221    111111  245678899999876542 222233323221      1 236799999532  


Q ss_pred             cCCHHHHHHHHHHcCCcEEEecc
Q 027894          135 AVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                        ..-.+..++...+.|+.+++.
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~~  184 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAGV  184 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC-
T ss_pred             --cchHHHHHHHHHCCCEEEEeC
Confidence              345567777788998776653

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1.2e-05  Score=57.56  Aligned_cols=72  Identities=11%  Similarity=0.014  Sum_probs=41.1

Q ss_pred             CCcEEEEEEeCCChhhHHH-HHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc--CCcEEEeccCCCC
Q 027894           85 GAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE--NTFFMETSALESM  161 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~  161 (217)
                      ..+.++.++|+........ ...+..++....      ++|+||+|+..+    .+..++..+..  .+++++++ .-..
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD------~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAGE----AEKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHHTCS------EEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHHhCC------cccccccccccH----HHHHHHHHHHHhCCCeEEEee-CCcc
Confidence            3578899999987643222 222334444322      788999998652    23445555544  36677544 3344


Q ss_pred             CHHHHH
Q 027894          162 NVENAF  167 (217)
Q Consensus       162 ~v~~~~  167 (217)
                      .++.+|
T Consensus       190 ~~~~ll  195 (222)
T d1nija1         190 DLGLLF  195 (222)
T ss_dssp             CGGGGS
T ss_pred             CHHHhh
Confidence            555554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.18  E-value=1.6e-07  Score=67.52  Aligned_cols=23  Identities=43%  Similarity=0.657  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ..+++|++|||||||||+|.+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            45799999999999999998863

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.13  E-value=1.9e-06  Score=61.05  Aligned_cols=85  Identities=12%  Similarity=0.039  Sum_probs=50.1

Q ss_pred             EEEEEEeCCCchhhhhh----hHhh---h-----cCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCC
Q 027894           62 VKAQIWDTAGQERYRAI----TSAY---Y-----RGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKA  128 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~----~~~~---~-----~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~  128 (217)
                      ..+.++||+|...+...    +..+   .     ...+-+++|+|++... ....+..++..+.      . --+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~------~-~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG------L-TGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC------C-SEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC------C-ceEEEecc
Confidence            46899999994322111    1111   1     2456789999987654 3444444444442      1 24579999


Q ss_pred             CCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894          129 DLRHLCAVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus       129 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      |...    ..-.+..++...+.|+.+++.
T Consensus       162 Det~----~~G~~l~~~~~~~~Pi~~i~~  186 (207)
T d1okkd2         162 DGTA----KGGVLIPIVRTLKVPIKFVGV  186 (207)
T ss_dssp             TSSC----CCTTHHHHHHHHCCCEEEEEC
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEeC
Confidence            9643    234456667777888766663

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.72  E-value=7.3e-06  Score=56.52  Aligned_cols=41  Identities=12%  Similarity=0.207  Sum_probs=28.8

Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHhhccc
Q 027894          139 EDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKA  182 (217)
Q Consensus       139 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~  182 (217)
                      ....++.+.++.+++.+..   .++++.++.+++.+.+....++
T Consensus       146 ~~~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~ll~~~~  186 (192)
T d1lw7a2         146 QLLKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEKVLNEEE  186 (192)
T ss_dssp             HHHHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHHHHCcCc
Confidence            3455566677888887764   4688889888888877665443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1e-05  Score=54.99  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-|+|+|.+|||||||+++|...
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            35899999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.66  E-value=1.4e-05  Score=54.53  Aligned_cols=27  Identities=15%  Similarity=0.324  Sum_probs=23.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .+..++|++.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            355689999999999999999998764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.60  E-value=1.3e-05  Score=54.49  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..+|+++|++||||||+.+.|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=4.6e-05  Score=56.29  Aligned_cols=60  Identities=18%  Similarity=0.179  Sum_probs=40.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCC-----CCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-----SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ   72 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      +..=|.++|+.++|||+|+|.|.+....-.     ...|.|+-.....+ ..+....+.++||.|.
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~   95 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGL   95 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCB
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccc
Confidence            466789999999999999999998763221     12344443333322 2344467899999994

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.52  E-value=2.4e-05  Score=52.15  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+++|++|||||||+++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998653

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.48  E-value=3.2e-05  Score=53.75  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..+||+++|+|||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999998875

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.47  E-value=3e-05  Score=52.64  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |.|+|.+|||||||+++|+..
T Consensus         4 i~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            369999999999999998764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.46  E-value=3.2e-05  Score=53.19  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999888653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.39  E-value=4.4e-05  Score=52.65  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ++|+++|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=4.7e-05  Score=52.41  Aligned_cols=23  Identities=26%  Similarity=0.593  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +||+++|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=4.8e-05  Score=52.42  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .+||+|+|++||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999998663

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.37  E-value=4.5e-05  Score=51.68  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -|++.|++||||||+.++|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.34  E-value=6.6e-05  Score=52.21  Aligned_cols=25  Identities=32%  Similarity=0.632  Sum_probs=22.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..+||+++|+|||||||+...|...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            4579999999999999999998763

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.33  E-value=4.5e-05  Score=52.94  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .++|+|+|++||||||+.+.|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=5.8e-05  Score=51.83  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +||+++|+|||||||..+.|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999888653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=7.3e-05  Score=51.18  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ...-|+++|.+||||||+.+++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.24  E-value=0.0001  Score=51.17  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..|+|+|+|||||||+.++|...
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999998763

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=7.3e-05  Score=50.08  Aligned_cols=22  Identities=27%  Similarity=0.596  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=7.3e-05  Score=51.14  Aligned_cols=22  Identities=36%  Similarity=0.641  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .|++.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=8.4e-05  Score=53.64  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .|+++|++|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999888743

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.21  E-value=0.00031  Score=47.02  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ..-|++-|+-|+|||||++.+...-
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            3568899999999999999988754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=3.5e-05  Score=53.18  Aligned_cols=21  Identities=29%  Similarity=0.664  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+++|++|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=9.4e-05  Score=51.23  Aligned_cols=21  Identities=43%  Similarity=0.724  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.19  E-value=8.2e-05  Score=50.43  Aligned_cols=23  Identities=39%  Similarity=0.576  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .||+++|++||||||+.+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999888654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=9.9e-05  Score=51.81  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .-|+++|.||||||||.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3489999999999999999875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.13  E-value=0.00012  Score=50.45  Aligned_cols=21  Identities=43%  Similarity=0.591  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+++|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999998764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.13  E-value=0.00013  Score=52.75  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            68999999999999999887743

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.13  E-value=0.00015  Score=50.88  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            46899999999999999998754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.10  E-value=0.00013  Score=49.92  Aligned_cols=20  Identities=30%  Similarity=0.358  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027894           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~   35 (217)
                      |+|.|.+||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998855

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.09  E-value=0.00013  Score=53.07  Aligned_cols=23  Identities=48%  Similarity=0.599  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            68999999999999999887643

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00017  Score=50.09  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      +.|+|+|+|||||||..+.|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998865

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00014  Score=52.07  Aligned_cols=23  Identities=48%  Similarity=0.625  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            36899999999999999887743

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00014  Score=52.76  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            68999999999999999887743

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.08  E-value=0.00013  Score=49.16  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +|+++|++||||||+.+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.07  E-value=0.00014  Score=52.00  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47899999999999999777643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00016  Score=50.28  Aligned_cols=21  Identities=52%  Similarity=0.782  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+|+|++|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998664

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.05  E-value=0.00023  Score=48.31  Aligned_cols=24  Identities=17%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -+-|.++|.+||||||+.+.|...
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999888653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00016  Score=48.90  Aligned_cols=22  Identities=41%  Similarity=0.533  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      =++++|++||||||+.+.|...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999998764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.02  E-value=0.00017  Score=48.90  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999888664

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.02  E-value=0.00018  Score=51.68  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ++++|++|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5789999999999999998854

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00017  Score=53.25  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            48999999999999999988743

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.99  E-value=0.00019  Score=51.54  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37999999999999999888754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00019  Score=50.48  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -|+|+||+|||||||+++|...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999875

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.97  E-value=0.00021  Score=48.40  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |++.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566799999999999998774

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.94  E-value=0.00016  Score=52.58  Aligned_cols=22  Identities=41%  Similarity=0.584  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +++++|++|||||||++.+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            6899999999999999877763

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.93  E-value=0.00023  Score=51.15  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999888754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.92  E-value=0.00021  Score=52.11  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -|++.|+||+|||||.+.+.+..
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999987743

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00031  Score=48.77  Aligned_cols=24  Identities=17%  Similarity=0.517  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .--|+++|++||||||+...|...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998663

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.0022  Score=45.88  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ..+++.|++|+||||+++.+....
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999987753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00021  Score=51.35  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            46999999999999999987754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.91  E-value=0.00035  Score=52.63  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -+|+|.|++|||||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.91  E-value=0.00034  Score=48.23  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=21.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ...+=|+|.|++|||||||.+.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456699999999999999999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.90  E-value=0.00024  Score=51.21  Aligned_cols=22  Identities=41%  Similarity=0.563  Sum_probs=20.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ++++|+.|+|||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999998854

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.90  E-value=0.00016  Score=51.64  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ++++|++|||||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            7999999999999999998854

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00017  Score=51.69  Aligned_cols=21  Identities=43%  Similarity=0.726  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ++++|+.|+|||||++.+.+-
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            789999999999999999873

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.86  E-value=0.00029  Score=47.78  Aligned_cols=21  Identities=19%  Similarity=0.534  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+++|++||||||+.+.|...
T Consensus         5 Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.85  E-value=0.00027  Score=49.04  Aligned_cols=22  Identities=18%  Similarity=0.493  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -|+++|+|||||||+...|...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999998663

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.84  E-value=0.00039  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      ++++|+.|+|||||++.+.+-..
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            68999999999999999988653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.00035  Score=50.07  Aligned_cols=24  Identities=29%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ...+++.|+||+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00016  Score=49.95  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..-|.++|.+||||||+.+.|...
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999988654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.76  E-value=0.00036  Score=50.74  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999998743

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.73  E-value=0.00038  Score=50.54  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=20.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ++++|+.|+|||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999998864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.72  E-value=0.00038  Score=47.69  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=17.9

Q ss_pred             EEE-EEcCCCCChHHHHHHHhhC
Q 027894           15 KVV-LIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~-vvG~~~~GKtsli~~l~~~   36 (217)
                      ||+ |.|.+||||||+++.|...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            454 5799999999999988653

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00049  Score=47.68  Aligned_cols=24  Identities=33%  Similarity=0.628  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -+++++|++|+|||+++..|...-
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            478999999999999998876643

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.71  E-value=0.00041  Score=49.61  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..+++.|+||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            36899999999999999988764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.67  E-value=0.00021  Score=51.34  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999998854

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00057  Score=49.88  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -++++||++|+|||+++..|...-
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            478999999999999999876643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.58  E-value=0.00065  Score=47.91  Aligned_cols=24  Identities=17%  Similarity=0.354  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .+.|++-|++||||||+.+.|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            477899999999999999988663

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00073  Score=47.44  Aligned_cols=23  Identities=17%  Similarity=0.393  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +-|+|.|++|||||||.+.|...
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            66899999999999999988653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.52  E-value=0.00075  Score=47.98  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .+++.|++|+||||+++.+....
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            58999999999999999887643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.00073  Score=50.48  Aligned_cols=23  Identities=30%  Similarity=0.702  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.|+++||||+|||.|.+.+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999998774

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.46  E-value=0.00075  Score=48.70  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .--|++.|++|+|||+|++.+.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            456999999999999999999764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.43  E-value=0.0011  Score=45.83  Aligned_cols=24  Identities=29%  Similarity=0.643  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .+-|+|-|..||||||+++.|...
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            367999999999999999998764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.00094  Score=48.03  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .-.+++.|++|+||||+++.+.+..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999998743

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.37  E-value=0.001  Score=48.14  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -.+++.|++|+|||++++.+....
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999987754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.37  E-value=0.00093  Score=48.62  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -+++.|+||+|||++++.+...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3456799999999999998765

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.30  E-value=0.00094  Score=48.39  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -|+|.|++|+|||||++++...
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            5789999999999999998653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0013  Score=46.25  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      =|+|.|+|||||+|+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4677899999999999988664

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.22  E-value=0.0017  Score=44.56  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .+-|+|.|.+||||||+.+.|...
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            467899999999999999988653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.20  E-value=0.0013  Score=47.40  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -|++.|++|+|||+|++.+...
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            4899999999999999999863

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.0015  Score=46.38  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999988764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.10  E-value=0.0016  Score=45.32  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998865

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.0017  Score=47.05  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.|++.|++|+|||+|++.+...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            35899999999999999998774

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.04  E-value=0.0018  Score=45.39  Aligned_cols=27  Identities=26%  Similarity=0.242  Sum_probs=22.1

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           10 YDYLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        10 ~~~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .....-|.+.|.+|||||||.+.|...
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            334566999999999999999998653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0018  Score=46.97  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -.|++.|++|+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            35899999999999999999764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.04  E-value=0.0015  Score=51.16  Aligned_cols=21  Identities=33%  Similarity=0.849  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      +|+++||+|||||-|.++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999865

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.0018  Score=45.73  Aligned_cols=22  Identities=18%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .+++.|++|+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            5899999999999999988654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0025  Score=47.33  Aligned_cols=29  Identities=21%  Similarity=0.289  Sum_probs=23.3

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhh
Q 027894            7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus         7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      +......+=|+|.|++|||||||.+.|..
T Consensus        74 ~~~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          74 TNGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            34455678999999999999999888754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0019  Score=45.61  Aligned_cols=23  Identities=22%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .+++.|++|+||||+++.+...-
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHh
Confidence            48999999999999999998753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.0025  Score=46.41  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      --|++.|++|+|||+|++.+....
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            459999999999999999997744

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0029  Score=44.16  Aligned_cols=20  Identities=25%  Similarity=0.400  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027894           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~   35 (217)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998865

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0027  Score=45.08  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .|+|-|..||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.57  E-value=0.0023  Score=49.23  Aligned_cols=22  Identities=36%  Similarity=0.721  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      -++++||++|||||+++..|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            4579999999999999865543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.55  E-value=0.0053  Score=42.65  Aligned_cols=22  Identities=41%  Similarity=0.622  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      +=|++.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6689999999999999988754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.50  E-value=0.0049  Score=41.76  Aligned_cols=24  Identities=38%  Similarity=0.576  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      -|++.|++|+||||+.-.|....+
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            489999999999999999887654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0058  Score=42.56  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      +=|+|.|..||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            558899999999999999886543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0038  Score=43.65  Aligned_cols=20  Identities=30%  Similarity=0.414  Sum_probs=17.4

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027894           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~   35 (217)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999998887755

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.0066  Score=44.47  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=19.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHh
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~   34 (217)
                      ...+=|+|-|.+|||||||...+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            345788999999999999987663

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.37  E-value=0.0023  Score=47.03  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      =|+|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999998754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.28  E-value=0.0056  Score=41.49  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      .-|++.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            3479999999999999999987554

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.28  E-value=0.0024  Score=47.98  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .|+++|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999998864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.25  E-value=0.0051  Score=44.95  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-|.|+|+.|+|||||...+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999998764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.22  E-value=0.0051  Score=46.14  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           11 DYLYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        11 ~~~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      ...++|.|=|.-|+||||+++.|....
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999997753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.011  Score=40.82  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      +.|.|++|+|||+|...|...-.
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            68999999999999988876543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.13  E-value=0.0056  Score=46.53  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -+++.|+||+|||+|.+.+.+.
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988763

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.001  Score=45.86  Aligned_cols=19  Identities=37%  Similarity=0.663  Sum_probs=16.5

Q ss_pred             EEEcCCCCChHHHHHHHhh
Q 027894           17 VLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        17 ~vvG~~~~GKtsli~~l~~   35 (217)
                      +|+|+.|||||||+.++.-
T Consensus        28 vi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            5789999999999998753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0062  Score=43.22  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999998764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.97  E-value=0.0046  Score=45.57  Aligned_cols=17  Identities=35%  Similarity=0.798  Sum_probs=15.9

Q ss_pred             EEEcCCCCChHHHHHHH
Q 027894           17 VLIGDSGVGKSNLLSRF   33 (217)
Q Consensus        17 ~vvG~~~~GKtsli~~l   33 (217)
                      +++|+.||||||++.++
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            78999999999999887

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.94  E-value=0.0093  Score=44.70  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=22.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999988764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.93  E-value=0.0065  Score=46.21  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..-+++++||+|||||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            345699999999999999998865

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.92  E-value=0.0085  Score=40.29  Aligned_cols=25  Identities=32%  Similarity=0.542  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      .-|++.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999988887654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.0068  Score=42.81  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -+.|.|++|+|||+|...|...-
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999998887654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.85  E-value=0.0073  Score=46.58  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      |+|.|++||||||.+..++...
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            8999999999999999998854

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.78  E-value=0.0095  Score=44.53  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999998864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.012  Score=43.68  Aligned_cols=24  Identities=21%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      .-.++++|++|+|||.|.+.|...
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHhh
Confidence            346899999999999999988663

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.75  E-value=0.0087  Score=41.87  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      +.+.|++|+|||.|++++.+..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999987754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.64  E-value=0.0085  Score=42.59  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~~   38 (217)
                      =++|.|++|+|||+|.-.++..-.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhh
Confidence            368999999999999888876543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.011  Score=41.31  Aligned_cols=21  Identities=14%  Similarity=0.286  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |++-|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            889999999999999888653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.37  E-value=0.011  Score=41.82  Aligned_cols=24  Identities=38%  Similarity=0.635  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      --++|.|++|+|||+|...+...-
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            346899999999999999887753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.013  Score=40.75  Aligned_cols=21  Identities=19%  Similarity=0.445  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +++.|++|+||||+++.+...
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHh
Confidence            899999999999999987664

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.32  E-value=0.013  Score=43.58  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=17.9

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +++.|+||+|||.|.+.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.014  Score=41.49  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +++.|++|+||||+++.+...
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999987553

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.11  E-value=0.012  Score=45.10  Aligned_cols=22  Identities=32%  Similarity=0.641  Sum_probs=18.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~   34 (217)
                      ..+. +|+|+.|+|||+++.++.
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHHH
Confidence            3455 588999999999999873

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.91  E-value=0.015  Score=40.96  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      =+.|.|++|+|||+|...+..+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999999887644

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.018  Score=40.80  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -+.|.|++|+|||+|...++...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999998887643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.81  E-value=0.018  Score=40.67  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      -|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998865

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.76  E-value=0.014  Score=40.27  Aligned_cols=23  Identities=26%  Similarity=0.289  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      =-+++.|++++|||.|+..++.-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            35789999999999999987664

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.015  Score=44.91  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .-+++|+|.+|+|||+++..++.+.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHH
Confidence            3469999999999999998776543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.40  E-value=0.023  Score=41.08  Aligned_cols=20  Identities=25%  Similarity=0.504  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027894           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~   35 (217)
                      +++.|.+|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            68999999999999888764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.38  E-value=0.021  Score=39.84  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      -+.|.|++|+|||+|...++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            468899999999999877654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.20  E-value=0.19  Score=36.04  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +.+.|++++|||+|.-.+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            578999999999998877664

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.06  E-value=0.018  Score=42.02  Aligned_cols=15  Identities=20%  Similarity=0.665  Sum_probs=13.0

Q ss_pred             EEEEcCCCCChHHHH
Q 027894           16 VVLIGDSGVGKSNLL   30 (217)
Q Consensus        16 I~vvG~~~~GKtsli   30 (217)
                      ++|+|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678999999999764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.04  E-value=0.029  Score=40.95  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      =|++++|++|+|||+|+..+..+.
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHH
Confidence            489999999999999998887643

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.57  E-value=0.025  Score=41.59  Aligned_cols=15  Identities=27%  Similarity=0.747  Sum_probs=13.2

Q ss_pred             EEEEcCCCCChHHHH
Q 027894           16 VVLIGDSGVGKSNLL   30 (217)
Q Consensus        16 I~vvG~~~~GKtsli   30 (217)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.46  E-value=0.43  Score=32.82  Aligned_cols=76  Identities=14%  Similarity=0.094  Sum_probs=49.5

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEE-EEEeCCCCCCcccCCHHH
Q 027894           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRHLCAVSTED  140 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~  140 (217)
                      +.+.++|+|+....  .....+..+|.++++... +..++..+......+..   .+.|++ +|+|+.+..+ .......
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~-~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD-RDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT-TCCCHHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhcccccccc-cceecchhhHHHHHHhh---hhhhhhhhhhccccccc-chhhhHH
Confidence            47899999886432  334456679999998885 45566666666666654   456654 7899998654 3344444


Q ss_pred             HHHH
Q 027894          141 AKAF  144 (217)
Q Consensus       141 ~~~~  144 (217)
                      .+.+
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4443

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.21  E-value=0.038  Score=39.70  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027894           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~   35 (217)
                      .+|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56999999999999887654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.07  E-value=0.057  Score=39.95  Aligned_cols=22  Identities=27%  Similarity=0.631  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027894           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -++++|++|+|||.+.+.|...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            5789999999999999987654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.75  E-value=0.38  Score=34.47  Aligned_cols=20  Identities=15%  Similarity=0.282  Sum_probs=16.9

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027894           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~   35 (217)
                      +.+.|++++|||+|.-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999866654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.55  E-value=0.053  Score=40.90  Aligned_cols=19  Identities=26%  Similarity=0.581  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 027894           15 KVVLIGDSGVGKSNLLSRF   33 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l   33 (217)
                      -.+|.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4688999999999988654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.51  E-value=0.057  Score=38.94  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027894           13 LYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .--+.+.|++++|||+|++.+..
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHH
Confidence            44578899999999999998766

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.74  E-value=0.064  Score=38.79  Aligned_cols=23  Identities=39%  Similarity=0.612  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      =|++++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHH
Confidence            37999999999999998888765

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.49  E-value=0.12  Score=32.23  Aligned_cols=26  Identities=15%  Similarity=0.089  Sum_probs=22.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      .-+-|.+-|.+|+||++|.+.|...-
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999986543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.94  E-value=0.13  Score=36.96  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027894           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      +.+.|++|+|||+|.-.+...-
T Consensus        57 tei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHHH
Confidence            5789999999999987776543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.71  E-value=0.13  Score=36.50  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      .-|++.|++|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3589999999999999988755

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.92  E-value=2.1  Score=29.99  Aligned_cols=87  Identities=11%  Similarity=0.067  Sum_probs=51.3

Q ss_pred             EEEEEEeCCCchhh-hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCc-EEEEEeCCCCCCcccCCH
Q 027894           62 VKAQIWDTAGQERY-RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIV-IMLVGNKADLRHLCAVST  138 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p-~iiv~nK~D~~~~~~~~~  138 (217)
                      +.+.++|+|+.-.. ..........+|.++++... +..++..+......+..... .+.+ .-++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            46899999874322 22222333567877777765 56667666665555544332 2333 346789988644    34


Q ss_pred             HHHHHHHHHcCCcEE
Q 027894          139 EDAKAFAERENTFFM  153 (217)
Q Consensus       139 ~~~~~~~~~~~~~~~  153 (217)
                      +...++.+..+.+++
T Consensus       191 ~~~~~~~~~~~~~~~  205 (269)
T d1cp2a_         191 ELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHTCCEE
T ss_pred             chhhhhHhhcCCeEE
Confidence            556666777776654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=87.91  E-value=0.44  Score=31.73  Aligned_cols=102  Identities=15%  Similarity=0.159  Sum_probs=55.2

Q ss_pred             CCeeeEEEEEcC-CCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh-------------
Q 027894           10 YDYLYKVVLIGD-SGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY-------------   75 (217)
Q Consensus        10 ~~~~~~I~vvG~-~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------------   75 (217)
                      ....+||+|+|. .+.|-+. +-.|..+.....                 ...+.+.++|.+.....             
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~l-~~~La~g~v~g~-----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~   82 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNHL-LFKLASGEVFGQ-----------------DQPIALKLLGSERSFQALEGVAMELEDSLY   82 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHHH-HHHHHHTTTTCT-----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTC
T ss_pred             cCCCcEEEEECCCcHHHHHH-HHHHHcCcccCC-----------------CceEEEEEecCccccchhcchhhhhccccc
Confidence            345789999996 6677554 445555432111                 11234566666552111             


Q ss_pred             --------hhhhHhhhcCCcEEEEEEeCCChh--hHHH--------HHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894           76 --------RAITSAYYRGAVGALLVYDVTRHV--TFEN--------VERWLKELRGHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        76 --------~~~~~~~~~~~d~ii~v~d~~~~~--s~~~--------~~~~~~~l~~~~~~~~p~iiv~nK~D  129 (217)
                              .......+.++|+++++-......  +-.+        ++.+...+..+..++..+++|+|-.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          83 PLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                    111233467889888877655422  1111        23444555555545666777778766

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.44  E-value=0.17  Score=36.00  Aligned_cols=21  Identities=33%  Similarity=0.619  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027894           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l~~   35 (217)
                      +|+|.|.-|+||||+.-.|..
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~   23 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            588999999999999876544

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.41  E-value=0.15  Score=34.30  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      |+|.|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998753

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.39  E-value=0.18  Score=35.41  Aligned_cols=20  Identities=20%  Similarity=0.333  Sum_probs=17.5

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027894           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~   35 (217)
                      +++.|+..+||||+++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            58899999999999998644

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.93  E-value=0.2  Score=34.96  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027894           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~~   36 (217)
                      +++.|+..+||||+++.+.-.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHHH
Confidence            689999999999999986443

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.56  E-value=0.17  Score=31.91  Aligned_cols=20  Identities=25%  Similarity=0.235  Sum_probs=15.9

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027894           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l~~   35 (217)
                      .++.+++|+|||.++-.+..
T Consensus        11 ~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            47799999999998765543

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.48  E-value=0.12  Score=37.44  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~   36 (217)
                      -|++++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            47899999999999998877654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=84.79  E-value=0.2  Score=36.69  Aligned_cols=15  Identities=47%  Similarity=0.733  Sum_probs=13.3

Q ss_pred             EEEcCCCCChHHHHH
Q 027894           17 VLIGDSGVGKSNLLS   31 (217)
Q Consensus        17 ~vvG~~~~GKtsli~   31 (217)
                      +++|-+|+|||||-.
T Consensus        18 lfFGLSGTGKTTLs~   32 (313)
T d2olra1          18 VFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEECSTTSSHHHHHC
T ss_pred             EEEccCCCCccccee
Confidence            699999999999763

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.52  E-value=0.33  Score=33.02  Aligned_cols=24  Identities=4%  Similarity=-0.022  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027894           12 YLYKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~vvG~~~~GKtsli~~l~~   35 (217)
                      ....+++.|++|+|||++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998876

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=84.45  E-value=0.23  Score=35.79  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027894           14 YKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~vvG~~~~GKtsli~~l~~~~   37 (217)
                      -|++++|.+|+|||+|+..+....
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             ceEeeccCCCCChHHHHHHHHhhh
Confidence            478999999999999987765543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.11  E-value=0.33  Score=33.00  Aligned_cols=21  Identities=19%  Similarity=0.320  Sum_probs=16.8

Q ss_pred             EEEEEcCC-CCChHHHHHHHhh
Q 027894           15 KVVLIGDS-GVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~vvG~~-~~GKtsli~~l~~   35 (217)
                      |+.|.|-. ||||||+.-.|..
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            68899995 9999999766533

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.70  E-value=0.22  Score=36.61  Aligned_cols=15  Identities=47%  Similarity=0.733  Sum_probs=13.4

Q ss_pred             EEEcCCCCChHHHHH
Q 027894           17 VLIGDSGVGKSNLLS   31 (217)
Q Consensus        17 ~vvG~~~~GKtsli~   31 (217)
                      +++|.+|+|||||-.
T Consensus        18 lffGLSGTGKTTLs~   32 (318)
T d1j3ba1          18 VFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEECTTSCHHHHTC
T ss_pred             EEEccCCCCcccccc
Confidence            899999999999753

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=83.39  E-value=2.4  Score=27.70  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=39.5

Q ss_pred             CChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894           96 TRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA  157 (217)
Q Consensus        96 ~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      +|..+++.. ......+..   .+.|+|+++......    ...+++.+++++.+++++.+..
T Consensus         3 sd~~~l~~~v~~~~~~l~~---AkrPvIi~G~g~~~~----~a~~~l~~lae~~~~Pv~tt~~   58 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIAN---RDKVAVLVGSKLRAA----GAEEAAVKFTDALGGAVATMAA   58 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---CSCEEEEECTTTTTT----TCHHHHHHHHHHHCCCEEEEGG
T ss_pred             CChHHHHHHHHHHHHHHHc---CCCEEEEECcCcccc----chHHHHHHHHHhhceeEEeccc
Confidence            566666554 444444443   679999999888753    3678899999999999886653

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.11  E-value=0.26  Score=36.19  Aligned_cols=14  Identities=50%  Similarity=0.750  Sum_probs=13.1

Q ss_pred             EEEcCCCCChHHHH
Q 027894           17 VLIGDSGVGKSNLL   30 (217)
Q Consensus        17 ~vvG~~~~GKtsli   30 (217)
                      +++|-+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999987

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.80  E-value=0.38  Score=34.25  Aligned_cols=18  Identities=33%  Similarity=0.807  Sum_probs=13.8

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 027894           16 VVLIGDSGVGKSNLLSRF   33 (217)
Q Consensus        16 I~vvG~~~~GKtsli~~l   33 (217)
                      |++.|.-|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            355599999999985544

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.78  E-value=0.37  Score=34.47  Aligned_cols=19  Identities=26%  Similarity=0.508  Sum_probs=15.2

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 027894           15 KVVLIGDSGVGKSNLLSRF   33 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l   33 (217)
                      =|++.|.-|+||||+.-.+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            3578999999999976554

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.74  E-value=3.9  Score=25.81  Aligned_cols=23  Identities=26%  Similarity=0.522  Sum_probs=16.5

Q ss_pred             EEEEEcC-CCCChHHHHHHHhhCcC
Q 027894           15 KVVLIGD-SGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~vvG~-~~~GKtsli~~l~~~~~   38 (217)
                      ||.++|. -.+| +++...+.....
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            8999995 7899 555666655443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.50  E-value=0.4  Score=34.43  Aligned_cols=87  Identities=13%  Similarity=0.109  Sum_probs=46.0

Q ss_pred             EEEEEEeCCCchhhhhhhHh-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcE-EEEEeCCCCCCcccCCH
Q 027894           62 VKAQIWDTAGQERYRAITSA-YYRGAVGALLVYDVTRHVTFENVERWLKELRGHT-DSNIVI-MLVGNKADLRHLCAVST  138 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~-iiv~nK~D~~~~~~~~~  138 (217)
                      +.+.++|+|+.-........ ....++.++++.. .+..++..+...+..+.... ..+.++ .+|.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            46789999875322222211 2235666665544 45556665555555443322 234443 36789887432    23


Q ss_pred             HHHHHHHHHcCCcEE
Q 027894          139 EDAKAFAERENTFFM  153 (217)
Q Consensus       139 ~~~~~~~~~~~~~~~  153 (217)
                      +...++....+.+++
T Consensus       194 ~~~~~~~~~~g~~vl  208 (289)
T d2afhe1         194 ELIIALANKLGTQMI  208 (289)
T ss_dssp             HHHHHHHHHHTSCEE
T ss_pred             HHHHHHHHHcCCeEE
Confidence            345566666676654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=80.87  E-value=0.5  Score=30.12  Aligned_cols=18  Identities=28%  Similarity=0.477  Sum_probs=14.3

Q ss_pred             EEEcCCCCChHH-HHHHHh
Q 027894           17 VLIGDSGVGKSN-LLSRFT   34 (217)
Q Consensus        17 ~vvG~~~~GKts-li~~l~   34 (217)
                      +++|+=.||||| |++++-
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            578999999999 566553

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.52  E-value=4.1  Score=28.70  Aligned_cols=19  Identities=26%  Similarity=0.585  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 027894           15 KVVLIGDSGVGKSNLLSRF   33 (217)
Q Consensus        15 ~I~vvG~~~~GKtsli~~l   33 (217)
                      +|++-|.-|+||||+.-.|
T Consensus         4 ~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5778899999999986654