Citrus Sinensis ID: 027976

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MVVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Secondary Structure (PSIPRED)
cHHccccccccccEEEEccccccccHHHHHHHcccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHccccEEEcccccccHHHHHccccEEEEEccccccccccccccccEEEEccccccccccccccccccEEEccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHEEEEEccccEEEEEccccccccHHHHHHcccHHHEcccccHHHHHHHHccccccccccHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHcccEEEEEccccccHHHHHccccEEEEcccccccEcHHHcccccEEEEccccccEEEEcccccccEEEEccEcHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvvqkmkflmpCQIIIRIHQlmhldegkilDAVSlekdvdgfhplnignlamrgreplfipctpkgCIELLIRSGVEIMGKNAVVIGrsnivglptslllqRHHATVSIVHAltknpeqitSEADIVIAAAGVANLvrgswlkpgavvldvgtcpvdvsvdpsceygyrlmgDVCYEEAMRLASvitpvpggvgpMTVAMLLSNTLDSAKRAYGFT
Flexible Loop (DISEMBL)
MVVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTldsakraygft
Low Complexity Region (SEG)
MVVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Disordered region (IsUnstruct)
*****MKFLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNT***********
Disordered Region (DISOPRED)
MVVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG**
Disordered Region (DISEMBL)
MVVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Disordered Region (DISPRO)
*VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q27772	933	C-1-tetrahydrofolate synt	N/A	no	0.851	0.197	0.558	7e-53
O96553	968	C-1-tetrahydrofolate synt	yes	no	0.851	0.190	0.558	2e-51
P09440	975	C-1-tetrahydrofolate synt	yes	no	0.870	0.192	0.528	4e-51
Q92BZ4	284	Bifunctional protein FolD	yes	no	0.875	0.665	0.485	3e-49
Q8Y7C5	284	Bifunctional protein FolD	yes	no	0.833	0.633	0.497	7e-49
C1L2R6	284	Bifunctional protein FolD	yes	no	0.833	0.633	0.502	1e-48
A0AIG1	284	Bifunctional protein FolD	yes	no	0.875	0.665	0.48	1e-48
B8DFW8	284	Bifunctional protein FolD	yes	no	0.833	0.633	0.497	1e-48
Q71ZW2	284	Bifunctional protein FolD	yes	no	0.833	0.633	0.502	3e-48
A0LE04	285	Bifunctional protein FolD	yes	no	0.884	0.670	0.519	4e-48

>sp|Q27772|C1TC_SPOFR C-1-tetrahydrofolate synthase, cytoplasmic OS=Spodoptera frugiperda PE=2 SV=3

 Score =  206 bits (525), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 137/188 (72%), Gaps = 4/188 (2%)

Query: 24  LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
           +D   I DAVS +KDVDG + +N G + + G    FIPCTP GC+EL+ R+GV I GKN 
Sbjct: 108 IDSHAITDAVSPDKDVDGLNTINEGRVRV-GDLSGFIPCTPAGCVELIKRTGVTIAGKNV 166

Query: 84  VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
           VV+GRS IVG P S LL+  HATV++ H+ TKN  +IT  ADI++ A G   +VRGSW+K
Sbjct: 167 VVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSEITKTADILVVAIGRGEMVRGSWIK 226

Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
           PGAVV+D G  P+    DP+ + G RL+GDV YEEA+++AS +TPVPGGVGPMTVAML+ 
Sbjct: 227 PGAVVIDCGINPIS---DPTKKSGQRLVGDVAYEEAVQVASHVTPVPGGVGPMTVAMLMR 283

Query: 204 NTLDSAKR 211
           NT+ +A+R
Sbjct: 284 NTVQAARR 291

Spodoptera frugiperda (taxid: 7108)
EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 3

>sp|O96553|C1TC_DROME C-1-tetrahydrofolate synthase, cytoplasmic OS=Drosophila melanogaster GN=pug PE=1 SV=4

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 137/188 (72%), Gaps = 4/188 (2%)

Query: 24  LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
           +D  +I DAVS EKDVDG H +N G LA+ G    F+PCTP GC+EL+ RSGVEI G  A
Sbjct: 143 IDSHRITDAVSPEKDVDGLHTVNEGRLAI-GDLGGFLPCTPWGCLELIRRSGVEIAGARA 201

Query: 84  VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
           VV+GRS IVG P + LL+  +ATV++ H+ T+N E+IT  ADI++   GVA +V+GSW+K
Sbjct: 202 VVLGRSKIVGTPAAELLKWANATVTVCHSKTRNLEEITRSADILVVGIGVAEMVKGSWIK 261

Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
           PGAVV+D   C ++V  D S   G +L+GDV Y EA+++A  +TPVPGGVGPMTVAML+ 
Sbjct: 262 PGAVVID---CGINVKPDASKASGSKLVGDVDYAEALQVAGHLTPVPGGVGPMTVAMLMK 318

Query: 204 NTLDSAKR 211
           NT+ SA R
Sbjct: 319 NTVRSAAR 326

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|P09440|C1TM_YEAST C-1-tetrahydrofolate synthase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIS1 PE=1 SV=1

 Score =  201 bits (510), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 136/191 (71%), Gaps = 3/191 (1%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           HLDE  I +AV  +KDVDGFH  N G LA +G +P FIPCTP GC++LL  + V++ GKN
Sbjct: 137 HLDETTITNAVDFKKDVDGFHRYNAGELAKKGGKPYFIPCTPYGCMKLLEEAHVKLDGKN 196

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVV+GRS+IVG P + LL+  +ATV++ H+ T+N  ++ S+ADIVIAA G+   V+  W+
Sbjct: 197 AVVLGRSSIVGNPIASLLKNANATVTVCHSHTRNIAEVVSQADIVIAACGIPQYVKSDWI 256

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K GAVV+DVG   ++   D S + G +L+GDV ++      S ITPVPGGVGPMTVAML+
Sbjct: 257 KEGAVVIDVG---INYVPDISKKSGQKLVGDVDFDSVKEKTSYITPVPGGVGPMTVAMLV 313

Query: 203 SNTLDSAKRAY 213
           SN L +AKR +
Sbjct: 314 SNVLLAAKRQF 324

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|Q92BZ4|FOLD_LISIN Bifunctional protein FolD OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=folD PE=3 SV=1

 Score =  194 bits (494), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/200 (48%), Positives = 138/200 (69%), Gaps = 11/200 (5%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    H+ E K++DA+S +KDVDGFHP+N+GNL + G++  F+PCTP G IEL+  
Sbjct: 93  ILVQLPLPKHISEEKVIDAISFDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKS 150

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ A G+
Sbjct: 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGL 210

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
           A  V+  ++KPGA+V+DVG            +   +L GDV +++    A  ITPVPGGV
Sbjct: 211 AKFVKKEYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVKEQAGFITPVPGGV 261

Query: 194 GPMTVAMLLSNTLDSAKRAY 213
           GPMT+ MLL+NTL +AKR +
Sbjct: 262 GPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria innocua serovar 6a (strain CLIP 11262) (taxid: 272626)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|Q8Y7C5|FOLD_LISMO Bifunctional protein FolD OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=folD PE=3 SV=1

 Score =  193 bits (491), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 95/191 (49%), Positives = 134/191 (70%), Gaps = 11/191 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IEL+  +G +I GK 
Sbjct: 102 HISEEKVIDTISFDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKR 159

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ A G+A  V+  ++
Sbjct: 160 AVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYI 219

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           KPGA+V+DVG            +   +L GDV +++ ++ A  ITPVPGGVGPMT+ MLL
Sbjct: 220 KPGAIVIDVGM---------DRDENNKLCGDVDFDDVVQEAGFITPVPGGVGPMTITMLL 270

Query: 203 SNTLDSAKRAY 213
           +NTL +AKR +
Sbjct: 271 ANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|C1L2R6|FOLD_LISMC Bifunctional protein FolD OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=folD PE=3 SV=1

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 133/191 (69%), Gaps = 11/191 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IEL+  +G +I GK 
Sbjct: 102 HISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKR 159

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ A G+A  V+  ++
Sbjct: 160 AVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYI 219

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           KPGAVV+DVG            +   +L GDV +++ +  A  ITPVPGGVGPMT+ MLL
Sbjct: 220 KPGAVVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLL 270

Query: 203 SNTLDSAKRAY 213
           +NTL +AKR +
Sbjct: 271 ANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4b (strain Clip81459) (taxid: 568819)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|A0AIG1|FOLD_LISW6 Bifunctional protein FolD OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=folD PE=3 SV=1

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 138/200 (69%), Gaps = 11/200 (5%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IEL+  
Sbjct: 93  ILVQLPLPKHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKS 150

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TKN  ++  EADI++ A G+
Sbjct: 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKNLPEVAKEADILVVATGL 210

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
           A  V+  ++KPGA+V+DVG            +   +L GDV +++ +  A  ITPVPGGV
Sbjct: 211 AKFVKKEYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVIEEAGFITPVPGGV 261

Query: 194 GPMTVAMLLSNTLDSAKRAY 213
           GPMT+ MLL+NTL +AKR +
Sbjct: 262 GPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) (taxid: 386043)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|B8DFW8|FOLD_LISMH Bifunctional protein FolD OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=folD PE=3 SV=1

 Score =  192 bits (488), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/191 (49%), Positives = 133/191 (69%), Gaps = 11/191 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IEL+  +G +I GK 
Sbjct: 102 HISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKR 159

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ A G+A  V+  ++
Sbjct: 160 AVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYI 219

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           KPGA+V+DVG            +   +L GDV +++ +  A  ITPVPGGVGPMT+ MLL
Sbjct: 220 KPGAIVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLL 270

Query: 203 SNTLDSAKRAY 213
           +NTL +AKR +
Sbjct: 271 ANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4a (strain HCC23) (taxid: 552536)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|Q71ZW2|FOLD_LISMF Bifunctional protein FolD OS=Listeria monocytogenes serotype 4b (strain F2365) GN=folD PE=3 SV=1

 Score =  191 bits (485), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 133/191 (69%), Gaps = 11/191 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IEL+  +G +I GK 
Sbjct: 102 HISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKR 159

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ A G+A  V+  ++
Sbjct: 160 AVVIGRSNIVGKPVAQLLLIENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYI 219

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           KPGAVV+DVG            +   +L GDV +++ +  A  ITPVPGGVGPMT+ MLL
Sbjct: 220 KPGAVVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLL 270

Query: 203 SNTLDSAKRAY 213
           +NTL +AKR +
Sbjct: 271 ANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|A0LE04|FOLD_MAGSM Bifunctional protein FolD OS=Magnetococcus sp. (strain MC-1) GN=folD PE=3 SV=1

 Score =  191 bits (484), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 134/202 (66%), Gaps = 11/202 (5%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    H+DE K+L+A+S  KD DGFHP N+G L     +P F PCTP G +E+L  
Sbjct: 94  ILVQLPLPKHIDEQKVLEAISPSKDADGFHPYNVGRLVTG--DPTFQPCTPWGVMEMLKV 151

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           SGV+  GK+AVVIGRSNIVG P +L+L   HATV+I H+ T +  +    ADIV+AA G 
Sbjct: 152 SGVDPKGKHAVVIGRSNIVGKPVALMLLAAHATVTICHSRTPDLAETVKRADIVVAAVGR 211

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
           AN+V GSW+K GAVV+DVG            E G +L GDV Y      AS ITPVPGGV
Sbjct: 212 ANMVPGSWIKKGAVVIDVGIN--------RGEDG-KLCGDVDYASCFEHASAITPVPGGV 262

Query: 194 GPMTVAMLLSNTLDSAKRAYGF 215
           GPMT+AMLL NT++ AKRA+  
Sbjct: 263 GPMTIAMLLKNTVEGAKRAHNI 284

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Magnetococcus sp. (strain MC-1) (taxid: 156889)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
224069028	269	predicted protein [Populus trichocarpa]	0.925	0.743	0.812	2e-91
449525075	357	PREDICTED: bifunctional protein FolD-lik	0.925	0.560	0.802	6e-91
449459574	357	PREDICTED: bifunctional protein FolD-lik	0.925	0.560	0.798	1e-90
255557907	358	methylenetetrahydrofolate dehydrogenase,	0.921	0.555	0.772	2e-88
356505416	361	PREDICTED: bifunctional protein FolD-lik	0.925	0.554	0.773	7e-88
147770970	362	hypothetical protein VITISV_024214 [Viti	0.939	0.560	0.763	4e-87
225439037	355	PREDICTED: bifunctional protein FolD-lik	0.925	0.563	0.778	9e-87
296085803	358	unnamed protein product [Vitis vinifera]	0.925	0.558	0.778	9e-87
388512035	361	unknown [Medicago truncatula]	0.925	0.554	0.773	2e-86
357438639	309	Bifunctional protein folD [Medicago trun	0.925	0.647	0.773	2e-86

>gi|224069028|ref|XP_002326257.1| predicted protein [Populus trichocarpa] gi|222833450|gb|EEE71927.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/203 (81%), Positives = 181/203 (89%), Gaps = 3/203 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLDEGKIL+ + LEKDVDGFHPLN+GNLAMRGREPLFIPCTPKGCIELLIR
Sbjct: 70  ILVQLPLPQHLDEGKILNVLKLEKDVDGFHPLNMGNLAMRGREPLFIPCTPKGCIELLIR 129

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           S VEIMGKNAVVIGRSNIVGLP SLLLQRHHATV+IVHA TKNPEQI  EADIV+ A GV
Sbjct: 130 SSVEIMGKNAVVIGRSNIVGLPISLLLQRHHATVTIVHAFTKNPEQIAREADIVVTATGV 189

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NLVRG+WLKPGAVV+DVGT PV+   DPSCE GYRL+GDVCYEEA ++AS ITPVPGGV
Sbjct: 190 PNLVRGNWLKPGAVVIDVGTFPVE---DPSCENGYRLIGDVCYEEASKVASAITPVPGGV 246

Query: 194 GPMTVAMLLSNTLDSAKRAYGFT 216
           GPMT+AMLLSNTLDSAKRAY FT
Sbjct: 247 GPMTIAMLLSNTLDSAKRAYDFT 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525075|ref|XP_004169545.1| PREDICTED: bifunctional protein FolD-like [Cucumis sativus]

 Score =  338 bits (868), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 163/203 (80%), Positives = 182/203 (89%), Gaps = 3/203 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLDE KIL++V LEKDVDGFHPLN+GNLAMRGREPLF+PCTPKGCIELLIR
Sbjct: 158 ILVQLPLPQHLDESKILNSVHLEKDVDGFHPLNMGNLAMRGREPLFLPCTPKGCIELLIR 217

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           SGVEI GK AVVIGRSNIVGLPTSLLLQRHHATVSIVHA T+NPEQI  EADIV+AAAGV
Sbjct: 218 SGVEITGKRAVVIGRSNIVGLPTSLLLQRHHATVSIVHAFTRNPEQIAREADIVVAAAGV 277

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NLVRGSWLKPGA+V+DVG  PV+   DPSCE+GYRL+GDVCYEEA R+AS ITPVPGGV
Sbjct: 278 PNLVRGSWLKPGAIVIDVGINPVE---DPSCEFGYRLIGDVCYEEASRVASAITPVPGGV 334

Query: 194 GPMTVAMLLSNTLDSAKRAYGFT 216
           GP+TVAMLL NTL+SAKRA+ FT
Sbjct: 335 GPVTVAMLLLNTLESAKRAHNFT 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459574|ref|XP_004147521.1| PREDICTED: bifunctional protein FolD-like [Cucumis sativus]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 162/203 (79%), Positives = 182/203 (89%), Gaps = 3/203 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLDE KIL++V LEKDVDGFHPLN+GNLAMRGREPLF+PCTPKGC+ELLIR
Sbjct: 158 ILVQLPLPQHLDESKILNSVHLEKDVDGFHPLNMGNLAMRGREPLFLPCTPKGCVELLIR 217

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           SGVEI GK AVVIGRSNIVGLPTSLLLQRHHATVSIVHA T+NPEQI  EADIV+AAAGV
Sbjct: 218 SGVEITGKRAVVIGRSNIVGLPTSLLLQRHHATVSIVHAFTRNPEQIAREADIVVAAAGV 277

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NLVRGSWLKPGA+V+DVG  PV+   DPSCE+GYRL+GDVCYEEA R+AS ITPVPGGV
Sbjct: 278 PNLVRGSWLKPGAIVIDVGINPVE---DPSCEFGYRLIGDVCYEEASRVASAITPVPGGV 334

Query: 194 GPMTVAMLLSNTLDSAKRAYGFT 216
           GP+TVAMLL NTL+SAKRA+ FT
Sbjct: 335 GPVTVAMLLLNTLESAKRAHNFT 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557907|ref|XP_002519982.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis] gi|223540746|gb|EEF42306.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 156/202 (77%), Positives = 179/202 (88%), Gaps = 3/202 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           +++++    HLDE KIL+ ++LEKDVDGFHPLN+GNLAMRGREPLFIPCTPKGC+ELLIR
Sbjct: 159 VLVQLPLPQHLDENKILNVLNLEKDVDGFHPLNMGNLAMRGREPLFIPCTPKGCVELLIR 218

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           S VEI GKNAVVIGRSNIVGLPTSLLLQRHHATV++VHA T +PE+IT +ADIV+ AAGV
Sbjct: 219 SDVEIKGKNAVVIGRSNIVGLPTSLLLQRHHATVTVVHAFTNDPEEITRKADIVVTAAGV 278

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NLVR +WLKPGAVV+DVGTCPV+   DPS E GYRL GDVCYEEA+++AS ITPVPGGV
Sbjct: 279 PNLVRNNWLKPGAVVIDVGTCPVE---DPSSECGYRLTGDVCYEEAVKVASAITPVPGGV 335

Query: 194 GPMTVAMLLSNTLDSAKRAYGF 215
           GPMT+AMLLSNTLDSAKR Y F
Sbjct: 336 GPMTIAMLLSNTLDSAKRTYNF 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505416|ref|XP_003521487.1| PREDICTED: bifunctional protein FolD-like [Glycine max]

 Score =  328 bits (842), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 157/203 (77%), Positives = 179/203 (88%), Gaps = 3/203 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLDE K+LDAV LEKDVDGFHPLN+GNLA+RGREPLF PCTPKGCIELLIR
Sbjct: 162 ILVQLPLPQHLDEEKVLDAVCLEKDVDGFHPLNMGNLAIRGREPLFTPCTPKGCIELLIR 221

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           SGVEIMGK AVVIG SNIVGLP SLLLQRHHATV+++HA T+NPEQITSEADIV++AAGV
Sbjct: 222 SGVEIMGKKAVVIGTSNIVGLPASLLLQRHHATVTVIHAFTQNPEQITSEADIVVSAAGV 281

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NLVRG+W+KPGA V+DVGT PV+   DP CE GYRL GDVCYEEA+++AS+ITPVPGGV
Sbjct: 282 PNLVRGNWIKPGAAVIDVGTTPVE---DPGCEDGYRLAGDVCYEEAVKVASIITPVPGGV 338

Query: 194 GPMTVAMLLSNTLDSAKRAYGFT 216
           GPMTVAMLL NTLDSAKR   F+
Sbjct: 339 GPMTVAMLLCNTLDSAKRMLNFS 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770970|emb|CAN65246.1| hypothetical protein VITISV_024214 [Vitis vinifera]

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 158/207 (76%), Positives = 181/207 (87%), Gaps = 4/207 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLDE KIL+ VSLEKDVDGF+PLN+GNLAMRGREPLFIPCT KGCIELL+R
Sbjct: 156 ILVQLPLPKHLDEEKILNMVSLEKDVDGFNPLNMGNLAMRGREPLFIPCTAKGCIELLLR 215

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           SGVEIMGK AVVIGRSNI GLPTSLLLQRHHATVSI+HAL+KNP+QIT +ADIV+ A GV
Sbjct: 216 SGVEIMGKKAVVIGRSNIAGLPTSLLLQRHHATVSILHALSKNPDQITRQADIVVTAVGV 275

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSV----DPSCEYGYRLMGDVCYEEAMRLASVITPV 189
            NLVRG WLKPGAVV+DVGT PV++ +    DPS E+GY L+GDVCYEEA+ +AS +TPV
Sbjct: 276 PNLVRGHWLKPGAVVIDVGTYPVEIKLMDQQDPSSEFGYHLVGDVCYEEALGVASAVTPV 335

Query: 190 PGGVGPMTVAMLLSNTLDSAKRAYGFT 216
           PGGVGPMT+AMLLSNTLDSAKRAY  T
Sbjct: 336 PGGVGPMTIAMLLSNTLDSAKRAYDIT 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439037|ref|XP_002264477.1| PREDICTED: bifunctional protein FolD-like [Vitis vinifera]

 Score =  325 bits (833), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 158/203 (77%), Positives = 179/203 (88%), Gaps = 3/203 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLDE KIL+ VSLEKDVDGF+PLN+GNLAMRGREPLFIPCT KGCIELL+R
Sbjct: 156 ILVQLPLPKHLDEEKILNMVSLEKDVDGFNPLNMGNLAMRGREPLFIPCTAKGCIELLLR 215

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           SGVEIMGK AVVIGRSNI GLPTSLLLQRHHATVSI+HAL+KNP+QIT +ADIV+ A GV
Sbjct: 216 SGVEIMGKKAVVIGRSNIAGLPTSLLLQRHHATVSILHALSKNPDQITRQADIVVTAVGV 275

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NLVRG WLKPGAVV+DVGT PV+   DPS E+GY L+GDVCYEEA+ +AS +TPVPGGV
Sbjct: 276 PNLVRGHWLKPGAVVIDVGTYPVE---DPSSEFGYHLVGDVCYEEALGVASAVTPVPGGV 332

Query: 194 GPMTVAMLLSNTLDSAKRAYGFT 216
           GPMT+AMLLSNTLDSAKRAY  T
Sbjct: 333 GPMTIAMLLSNTLDSAKRAYDIT 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085803|emb|CBI31127.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (832), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 158/203 (77%), Positives = 179/203 (88%), Gaps = 3/203 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLDE KIL+ VSLEKDVDGF+PLN+GNLAMRGREPLFIPCT KGCIELL+R
Sbjct: 159 ILVQLPLPKHLDEEKILNMVSLEKDVDGFNPLNMGNLAMRGREPLFIPCTAKGCIELLLR 218

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           SGVEIMGK AVVIGRSNI GLPTSLLLQRHHATVSI+HAL+KNP+QIT +ADIV+ A GV
Sbjct: 219 SGVEIMGKKAVVIGRSNIAGLPTSLLLQRHHATVSILHALSKNPDQITRQADIVVTAVGV 278

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NLVRG WLKPGAVV+DVGT PV+   DPS E+GY L+GDVCYEEA+ +AS +TPVPGGV
Sbjct: 279 PNLVRGHWLKPGAVVIDVGTYPVE---DPSSEFGYHLVGDVCYEEALGVASAVTPVPGGV 335

Query: 194 GPMTVAMLLSNTLDSAKRAYGFT 216
           GPMT+AMLLSNTLDSAKRAY  T
Sbjct: 336 GPMTIAMLLSNTLDSAKRAYDIT 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512035|gb|AFK44079.1| unknown [Medicago truncatula]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/203 (77%), Positives = 179/203 (88%), Gaps = 3/203 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLDE KILDAV LEKDVDGFHP+N+GNLA+RGREPLFIPCT K CIELLIR
Sbjct: 162 ILVQLPLPQHLDEEKILDAVCLEKDVDGFHPVNMGNLALRGREPLFIPCTTKACIELLIR 221

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           SGVEIMGK AVVIGRSNIVGLPTSLLLQRHHATV++VHA T+NPEQITSEADIV++AAGV
Sbjct: 222 SGVEIMGKKAVVIGRSNIVGLPTSLLLQRHHATVTVVHAFTENPEQITSEADIVVSAAGV 281

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NLV G+W+K GA V+DVGT PV+   DPSCE GYRL+GDVC+EE +++ASVITPVPGGV
Sbjct: 282 PNLVCGNWIKSGATVIDVGTIPVE---DPSCEDGYRLVGDVCFEEVIKVASVITPVPGGV 338

Query: 194 GPMTVAMLLSNTLDSAKRAYGFT 216
           GPMTV MLL NTLDSAKR + FT
Sbjct: 339 GPMTVTMLLVNTLDSAKRLFNFT 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438639|ref|XP_003589595.1| Bifunctional protein folD [Medicago truncatula] gi|355478643|gb|AES59846.1| Bifunctional protein folD [Medicago truncatula]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/203 (77%), Positives = 179/203 (88%), Gaps = 3/203 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLDE KILDAV LEKDVDGFHP+N+GNLA+RGREPLFIPCT K CIELLIR
Sbjct: 110 ILVQLPLPQHLDEEKILDAVCLEKDVDGFHPVNMGNLALRGREPLFIPCTTKACIELLIR 169

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           SGVEIMGK AVVIGRSNIVGLPTSLLLQRHHATV++VHA T+NPEQITSEADIV++AAGV
Sbjct: 170 SGVEIMGKKAVVIGRSNIVGLPTSLLLQRHHATVTVVHAFTENPEQITSEADIVVSAAGV 229

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NLV G+W+K GA V+DVGT PV+   DPSCE GYRL+GDVC+EE +++ASVITPVPGGV
Sbjct: 230 PNLVCGNWIKSGATVIDVGTIPVE---DPSCEDGYRLVGDVCFEEVIKVASVITPVPGGV 286

Query: 194 GPMTVAMLLSNTLDSAKRAYGFT 216
           GPMTV MLL NTLDSAKR + FT
Sbjct: 287 GPMTVTMLLVNTLDSAKRLFNFT 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2064143	352	AT2G38660 [Arabidopsis thalian	0.912	0.559	0.755	1.1e-78
TAIR|locus:2127113	360	EMB3127 "EMBRYO DEFECTIVE 3127	0.921	0.552	0.702	5.1e-74
TAIR|locus:2127083	310	AT4G00600 [Arabidopsis thalian	0.921	0.641	0.658	2.4e-69
TAIR|locus:2082254	299	AT3G12290 [Arabidopsis thalian	0.916	0.662	0.641	9.4e-66
DICTYBASE|DDB_G0283121	292	DDB_G0283121 "methenyl tetrahy	0.875	0.647	0.560	9.2e-52
FB|FBgn0020385	968	pug "pugilist" [Drosophila mel	0.851	0.190	0.558	3.4e-48
ASPGD|ASPL0000036964	1031	AN2998 [Emericella nidulans (t	0.907	0.190	0.535	1.4e-47
SGD|S000000288	975	MIS1 "Mitochondrial C1-tetrahy	0.912	0.202	0.51	2e-47
CGD|CAL0000024	1025	MIS12 [Candida albicans (taxid	0.893	0.188	0.494	4.8e-47
UNIPROTKB|Q5AAF6	1025	MIS1 "Putative uncharacterized	0.893	0.188	0.494	4.8e-47

TAIR|locus:2064143 AT2G38660 [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 151/200 (75%), Positives = 174/200 (87%)

Query:    14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
             I++++    HL+E KIL+ V LEKDVDGFHPLN+GNLAMRGREPLF+ CTPKGC+ELLIR
Sbjct:   155 ILVQLPLPQHLNESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIR 214

Query:    74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
             +GVEI GKNAVVIGRSNIVGLP SLLLQRH ATVS VHA TK+PE IT +ADIVIAAAG+
Sbjct:   215 TGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEHITRKADIVIAAAGI 274

Query:   134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
              NLVRGSWLKPGAVV+DVGT PV+   D SCE+GYRL+GDVCYEEA+ +AS ITPVPGGV
Sbjct:   275 PNLVRGSWLKPGAVVIDVGTTPVE---DSSCEFGYRLVGDVCYEEALGVASAITPVPGGV 331

Query:   194 GPMTVAMLLSNTLDSAKRAY 213
             GPMT+ MLL NTL++AKR +
Sbjct:   332 GPMTITMLLCNTLEAAKRIF 351

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2127113 EMB3127 "EMBRYO DEFECTIVE 3127" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 142/202 (70%), Positives = 169/202 (83%)

Query:    14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
             I++++    H+DE  IL+AVS+EKDVDGFHPLNIG LAMRGREPLF+PCTPKGCIELL R
Sbjct:   161 ILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHR 220

Query:    74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
               +EI GK AVVIGRSNIVG+P +LLLQR  ATVSI+H+ TKNPE+IT EADI+I+A G 
Sbjct:   221 YNIEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIIHSRTKNPEEITREADIIISAVGQ 280

Query:   134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
              N+VRGSW+KPGAV++DVG  PV+   DPS   GYRL+GD+CYEEA ++AS ITPVPGGV
Sbjct:   281 PNMVRGSWIKPGAVLIDVGINPVE---DPSAARGYRLVGDICYEEASKVASAITPVPGGV 337

Query:   194 GPMTVAMLLSNTLDSAKRAYGF 215
             GPMT+AMLLSNTL SAKR + F
Sbjct:   338 GPMTIAMLLSNTLTSAKRIHNF 359

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2127083 AT4G00600 [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 133/202 (65%), Positives = 164/202 (81%)

Query:    14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
             +++++    H+DE  IL+AVS+EKDVDGFHPLNIG LAMRGREPLF+PCTPKGCIELL R
Sbjct:   111 VLVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHR 170

Query:    74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
               +E  GK AVVIGRSNIVG+P +LLLQ+  ATVSI+H+ T NPE++T +ADI+I+A G 
Sbjct:   171 YNIEFKGKRAVVIGRSNIVGMPAALLLQKEDATVSIIHSRTMNPEELTRQADILISAVGK 230

Query:   134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
              N+VRGSW+KPGAV++DVG  PV+   DPS   G RL+GD+CY EA ++AS ITPVPG V
Sbjct:   231 PNMVRGSWIKPGAVLIDVGIKPVE---DPSAAGGERLVGDICYVEASKIASAITPVPGDV 287

Query:   194 GPMTVAMLLSNTLDSAKRAYGF 215
             GPMT+AMLLSNTL SAKR + F
Sbjct:   288 GPMTIAMLLSNTLTSAKRIHNF 309

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2082254 AT3G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 129/201 (64%), Positives = 162/201 (80%)

Query:    14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
             I++++    H++E  IL A+S++KDVDGFHPLNIG LAM+GREPLF+PCTPKGC+ELL R
Sbjct:   101 ILVQLPLPKHINEEHILGAISIDKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLAR 160

Query:    74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
             SGV+I G+ AVV+GRSNIVGLP SLLL +  ATV+ VH+ TK+PE I  EADIVIAA G 
Sbjct:   161 SGVKIKGQRAVVVGRSNIVGLPVSLLLLKADATVTTVHSHTKDPEAIIREADIVIAACGQ 220

Query:   134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
             A++++G+W+KPGA V+DVGT  V    DPS + GYRL+GDV + EA ++A  ITPVPGGV
Sbjct:   221 AHMIKGNWIKPGAAVIDVGTNAVS---DPSKKSGYRLVGDVDFAEASKVAGFITPVPGGV 277

Query:   194 GPMTVAMLLSNTLDSAKRAYG 214
             GPMTVAMLL NT+D AKR +G
Sbjct:   278 GPMTVAMLLRNTVDGAKRVFG 298

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0283121 DDB_G0283121 "methenyl tetrahydrofolate cyclohydrolase / NADP-dependent methylene H4F dehydrogenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 111/198 (56%), Positives = 142/198 (71%)

Query:    14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
             I++++    H++E  IL  +   KDVDGFHP+NIG LAMRGR+  F PCTPKGCIE+L R
Sbjct:   100 ILVQLPLPSHINEEIILTQIDESKDVDGFHPVNIGKLAMRGRKADFEPCTPKGCIEMLDR 159

Query:    74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
             SG+EI GKNAVV+GRSNIVGLP S+LL    ATV+I H+ T N ++   EADI++ A G 
Sbjct:   160 SGIEIAGKNAVVLGRSNIVGLPVSMLLLSRDATVTICHSKTPNLKEKCREADILVVAIGK 219

Query:   134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
             A LV+  W+K GAVV+DVG     ++ D +     +L GDV Y E   +AS ITPVPGGV
Sbjct:   220 AKLVKKDWVKTGAVVIDVG-----MNTDEN----NKLCGDVDYNEVKEVASYITPVPGGV 270

Query:   194 GPMTVAMLLSNTLDSAKR 211
             GPMT+AML+ NTL+SAK+
Sbjct:   271 GPMTIAMLMKNTLESAKK 288

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;IBA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IBA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0020385 pug "pugilist" [Drosophila melanogaster (taxid:7227)]

 Score = 512 (185.3 bits), Expect = 3.4e-48, P = 3.4e-48
 Identities = 105/188 (55%), Positives = 137/188 (72%)

Query:    24 LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
             +D  +I DAVS EKDVDG H +N G LA+ G    F+PCTP GC+EL+ RSGVEI G  A
Sbjct:   143 IDSHRITDAVSPEKDVDGLHTVNEGRLAI-GDLGGFLPCTPWGCLELIRRSGVEIAGARA 201

Query:    84 VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
             VV+GRS IVG P + LL+  +ATV++ H+ T+N E+IT  ADI++   GVA +V+GSW+K
Sbjct:   202 VVLGRSKIVGTPAAELLKWANATVTVCHSKTRNLEEITRSADILVVGIGVAEMVKGSWIK 261

Query:   144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
             PGAVV+D   C ++V  D S   G +L+GDV Y EA+++A  +TPVPGGVGPMTVAML+ 
Sbjct:   262 PGAVVID---CGINVKPDASKASGSKLVGDVDYAEALQVAGHLTPVPGGVGPMTVAMLMK 318

Query:   204 NTLDSAKR 211
             NT+ SA R
Sbjct:   319 NTVRSAAR 326

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=ISS;IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=ISS;IBA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=ISS;IBA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

ASPGD|ASPL0000036964 AN2998 [Emericella nidulans (taxid:162425)]

 Score = 507 (183.5 bits), Expect = 1.4e-47, P = 1.4e-47
 Identities = 107/200 (53%), Positives = 137/200 (68%)

Query:    14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
             I++++    HL E  +  AV+ EKDVDGF  +NIG LA RG  PLF+PCTPK  + LL  
Sbjct:   188 ILVQLPLPQHLSEHAVTSAVADEKDVDGFGAINIGELAKRGGRPLFVPCTPKAVMVLLKA 247

Query:    74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
             SGV+  GK AVV+GRS+IVG P S LL+   ATV++ H+ T +      +ADIV+AA G 
Sbjct:   248 SGVDPAGKEAVVLGRSDIVGSPVSYLLKNADATVTVCHSKTPDIASAVKKADIVVAAIGK 307

Query:   134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
                V+G W+KPGAVV+DVG   ++   D + + G RL+GDV YE A ++AS ITPVPGGV
Sbjct:   308 TEFVKGDWIKPGAVVIDVG---INYKPDSTKKSGQRLVGDVEYESASQVASKITPVPGGV 364

Query:   194 GPMTVAMLLSNTLDSAKRAY 213
             GPMTVAMLL N + SAK AY
Sbjct:   365 GPMTVAMLLENVVASAK-AY 383

GO:0006730 "one-carbon metabolic process" evidence=IEA;RCA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;RCA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IEA;RCA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;RCA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IEA

GO:0009257 "10-formyltetrahydrofolate biosynthetic process" evidence=IEA

SGD|S000000288 MIS1 "Mitochondrial C1-tetrahydrofolate synthase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 505 (182.8 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 102/200 (51%), Positives = 141/200 (70%)

Query:    14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
             ++I++    HLDE  I +AV  +KDVDGFH  N G LA +G +P FIPCTP GC++LL  
Sbjct:   128 LLIQLPLPRHLDETTITNAVDFKKDVDGFHRYNAGELAKKGGKPYFIPCTPYGCMKLLEE 187

Query:    74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
             + V++ GKNAVV+GRS+IVG P + LL+  +ATV++ H+ T+N  ++ S+ADIVIAA G+
Sbjct:   188 AHVKLDGKNAVVLGRSSIVGNPIASLLKNANATVTVCHSHTRNIAEVVSQADIVIAACGI 247

Query:   134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
                V+  W+K GAVV+DVG   ++   D S + G +L+GDV ++      S ITPVPGGV
Sbjct:   248 PQYVKSDWIKEGAVVIDVG---INYVPDISKKSGQKLVGDVDFDSVKEKTSYITPVPGGV 304

Query:   194 GPMTVAMLLSNTLDSAKRAY 213
             GPMTVAML+SN L +AKR +
Sbjct:   305 GPMTVAMLVSNVLLAAKRQF 324

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;IDA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IEA;IDA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0000105 "histidine biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IMP

CGD|CAL0000024 MIS12 [Candida albicans (taxid:5476)]

 Score = 502 (181.8 bits), Expect = 4.8e-47, P = 4.8e-47
 Identities = 97/196 (49%), Positives = 135/196 (68%)

Query:    14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
             I++++    H+DE  I ++V+ +KDVDGF   N+G L+ RG  P F PCTP G +EL+  
Sbjct:   171 ILVQLPLPKHIDESVITNSVATDKDVDGFDHYNVGQLSKRGGTPYFKPCTPNGIMELIKT 230

Query:    74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
             +G+ + GK AVVIGRS+IVG P + +L+    TV++ H  T+N  +I  +ADIV+AA G+
Sbjct:   231 TGIPLRGKTAVVIGRSDIVGTPVATMLRNEDCTVTVCHRYTQNLPEIVRQADIVVAAVGI 290

Query:   134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
             A  V+  W+K GA+V+DVG   ++   DP+ + G RL+GDV YEE  + AS ITPVPGGV
Sbjct:   291 AEYVKADWVKDGAIVIDVG---INYKDDPTAKRGRRLVGDVDYEEVAKKASFITPVPGGV 347

Query:   194 GPMTVAMLLSNTLDSA 209
             GPMTVAML SN  D+A
Sbjct:   348 GPMTVAMLCSNVYDAA 363

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5AAF6 MIS1 "Putative uncharacterized protein MIS1" [Candida albicans SC5314 (taxid:237561)]

 Score = 502 (181.8 bits), Expect = 4.8e-47, P = 4.8e-47
 Identities = 97/196 (49%), Positives = 135/196 (68%)

Query:    14 IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
             I++++    H+DE  I ++V+ +KDVDGF   N+G L+ RG  P F PCTP G +EL+  
Sbjct:   171 ILVQLPLPKHIDESVITNSVATDKDVDGFDHYNVGQLSKRGGTPYFKPCTPNGIMELIKT 230

Query:    74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
             +G+ + GK AVVIGRS+IVG P + +L+    TV++ H  T+N  +I  +ADIV+AA G+
Sbjct:   231 TGIPLRGKTAVVIGRSDIVGTPVATMLRNEDCTVTVCHRYTQNLPEIVRQADIVVAAVGI 290

Query:   134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
             A  V+  W+K GA+V+DVG   ++   DP+ + G RL+GDV YEE  + AS ITPVPGGV
Sbjct:   291 AEYVKADWVKDGAIVIDVG---INYKDDPTAKRGRRLVGDVDYEEVAKKASFITPVPGGV 347

Query:   194 GPMTVAMLLSNTLDSA 209
             GPMTVAML SN  D+A
Sbjct:   348 GPMTVAMLCSNVYDAA 363

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3ECA6	FOLD_CHLL2	3, ., 5, ., 4, ., 9	0.5154	0.8657	0.6317	yes	no
Q71ZW2	FOLD_LISMF	3, ., 5, ., 4, ., 9	0.5026	0.8333	0.6338	yes	no
Q1MPZ8	FOLD_LAWIP	3, ., 5, ., 4, ., 9	0.5130	0.8518	0.6195	yes	no
C1L2R6	FOLD_LISMC	3, ., 5, ., 4, ., 9	0.5026	0.8333	0.6338	yes	no
Q3ASI0	FOLD_CHLCH	3, ., 5, ., 4, ., 9	0.5126	0.8796	0.6440	yes	no
B3EJG9	FOLD_CHLPB	3, ., 5, ., 4, ., 9	0.5126	0.8796	0.6375	yes	no
A0LE04	FOLD_MAGSM	3, ., 5, ., 4, ., 9	0.5198	0.8842	0.6701	yes	no
B4SGR4	FOLD_PELPB	3, ., 5, ., 4, ., 9	0.5129	0.8611	0.6305	yes	no
Q2RIB4	FOLD_MOOTA	3, ., 5, ., 4, ., 9	0.5026	0.8240	0.6357	yes	no
A1BF67	FOLD_CHLPD	3, ., 5, ., 4, ., 9	0.5025	0.8611	0.6305	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.4.9	0.824
3rd Layer	3.5.4	0.766
3rd Layer	1.5.1	0.766
4th Layer	1.5.1.5	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
PLN02897	345	PLN02897, PLN02897, tetrahydrofolate dehydrogenase	1e-126
PLN02616	364	PLN02616, PLN02616, tetrahydrofolate dehydrogenase	1e-106
PLN02516	299	PLN02516, PLN02516, methylenetetrahydrofolate dehy	3e-97
cd01080	168	cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding	2e-82
pfam02882	160	pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydro	3e-82
COG0190	283	COG0190, FolD, 5,10-methylene-tetrahydrofolate deh	8e-80
PRK14190	284	PRK14190, PRK14190, bifunctional 5,10-methylene-te	3e-72
PRK14188	296	PRK14188, PRK14188, bifunctional 5,10-methylene-te	9e-71
PRK10792	285	PRK10792, PRK10792, bifunctional 5,10-methylene-te	7e-68
PRK14186	297	PRK14186, PRK14186, bifunctional 5,10-methylene-te	1e-65
PRK14174	295	PRK14174, PRK14174, bifunctional 5,10-methylene-te	6e-65
PRK14189	285	PRK14189, PRK14189, bifunctional 5,10-methylene-te	1e-64
PRK14191	285	PRK14191, PRK14191, bifunctional 5,10-methylene-te	1e-62
PRK14168	297	PRK14168, PRK14168, bifunctional 5,10-methylene-te	1e-62
PRK14179	284	PRK14179, PRK14179, bifunctional 5,10-methylene-te	1e-61
PRK14167	297	PRK14167, PRK14167, bifunctional 5,10-methylene-te	3e-60
PRK14170	284	PRK14170, PRK14170, bifunctional 5,10-methylene-te	6e-60
PRK14185	293	PRK14185, PRK14185, bifunctional 5,10-methylene-te	8e-60
PRK14194	301	PRK14194, PRK14194, bifunctional 5,10-methylene-te	6e-58
PRK14187	294	PRK14187, PRK14187, bifunctional 5,10-methylene-te	1e-57
PRK14193	284	PRK14193, PRK14193, bifunctional 5,10-methylene-te	3e-57
PRK14175	286	PRK14175, PRK14175, bifunctional 5,10-methylene-te	2e-56
PRK14176	287	PRK14176, PRK14176, bifunctional 5,10-methylene-te	2e-54
PRK14173	287	PRK14173, PRK14173, bifunctional 5,10-methylene-te	2e-54
PRK14184	286	PRK14184, PRK14184, bifunctional 5,10-methylene-te	4e-54
PRK14172	278	PRK14172, PRK14172, bifunctional 5,10-methylene-te	9e-54
PRK14183	281	PRK14183, PRK14183, bifunctional 5,10-methylene-te	1e-53
PRK14166	282	PRK14166, PRK14166, bifunctional 5,10-methylene-te	1e-53
PRK14182	282	PRK14182, PRK14182, bifunctional 5,10-methylene-te	6e-53
PRK14181	287	PRK14181, PRK14181, bifunctional 5,10-methylene-te	2e-52
PRK14178	279	PRK14178, PRK14178, bifunctional 5,10-methylene-te	2e-52
PRK14171	288	PRK14171, PRK14171, bifunctional 5,10-methylene-te	9e-51
PRK14169	282	PRK14169, PRK14169, bifunctional 5,10-methylene-te	4e-48
PRK14192	283	PRK14192, PRK14192, bifunctional 5,10-methylene-te	4e-47
PRK14177	284	PRK14177, PRK14177, bifunctional 5,10-methylene-te	7e-44
PRK14180	282	PRK14180, PRK14180, bifunctional 5,10-methylene-te	3e-43
cd05212	140	cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) b	3e-28
cd01079	197	cd01079, NAD_bind_m-THF_DH, NAD binding domain of	2e-13

>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase, putative

 Score =  360 bits (924), Expect = e-126
 Identities = 155/200 (77%), Positives = 175/200 (87%), Gaps = 3/200 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLDE KIL+ V LEKDVDGFHPLN+GNLAMRGREPLF+ CTPKGC+ELLIR
Sbjct: 148 ILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIR 207

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           SGVEI GKNAVVIGRSNIVGLP SLLLQRH ATVS VHA TK+PEQIT +ADIVIAAAG+
Sbjct: 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGI 267

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NLVRGSWLKPGAVV+DVGT PV+   D SCE+GYRL+GDVCYEEA+ +AS ITPVPGGV
Sbjct: 268 PNLVRGSWLKPGAVVIDVGTTPVE---DSSCEFGYRLVGDVCYEEALGVASAITPVPGGV 324

Query: 194 GPMTVAMLLSNTLDSAKRAY 213
           GPMT+ MLL NTLD+AKR +
Sbjct: 325 GPMTITMLLCNTLDAAKRIF 344

Length = 345

>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase, putative

 Score =  308 bits (791), Expect = e-106
 Identities = 144/202 (71%), Positives = 168/202 (83%), Gaps = 3/202 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    H+DE  IL+AVS+EKDVDGFHPLNIG LAMRGREPLF+PCTPKGCIELL R
Sbjct: 165 ILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHR 224

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
             VEI GK AVVIGRSNIVG+P +LLLQR  ATVSIVH+ TKNPE+IT EADI+I+A G 
Sbjct: 225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQ 284

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            N+VRGSW+KPGAVV+DVG  PV+   D S   GYRL+GDVCYEEA ++AS +TPVPGGV
Sbjct: 285 PNMVRGSWIKPGAVVIDVGINPVE---DASSPRGYRLVGDVCYEEACKVASAVTPVPGGV 341

Query: 194 GPMTVAMLLSNTLDSAKRAYGF 215
           GPMT+AMLLSNTL SAKR + F
Sbjct: 342 GPMTIAMLLSNTLTSAKRIHNF 363

Length = 364

>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase (NADP+)

 Score =  284 bits (729), Expect = 3e-97
 Identities = 129/201 (64%), Positives = 159/201 (79%), Gaps = 3/201 (1%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    H++E KIL+ +SLEKDVDGFHPLNIG LAM+GREPLF+PCTPKGC+ELL R
Sbjct: 101 ILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSR 160

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           SG+ I GK AVV+GRSNIVGLP SLLL +  ATV++VH+ T +PE I  EADIVIAAAG 
Sbjct: 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQ 220

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
           A +++G W+KPGA V+DVGT  V    DPS + GYRL+GDV + E  ++A  ITPVPGGV
Sbjct: 221 AMMIKGDWIKPGAAVIDVGTNAVS---DPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGV 277

Query: 194 GPMTVAMLLSNTLDSAKRAYG 214
           GPMTVAMLL NT+D AKR + 
Sbjct: 278 GPMTVAMLLKNTVDGAKRVFA 298

Length = 299

>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

 Score =  242 bits (620), Expect = 2e-82
 Identities = 98/175 (56%), Positives = 124/175 (70%), Gaps = 8/175 (4%)

Query: 36  EKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP 95
           EKDVDG HP+N+G LA+    P FIPCTP G +ELL R G+++ GK  VV+GRSNIVG P
Sbjct: 2   EKDVDGLHPVNLGRLALGR--PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59

Query: 96  TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCP 155
            + LL   +ATV++ H+ TKN ++ T +ADIVI A G   LV+G  +KPGAVV+DVG   
Sbjct: 60  LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR 119

Query: 156 VDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 210
           V    D S   G +L+GDV +E A   AS ITPVPGGVGPMTVAML+ NT+++AK
Sbjct: 120 VP---DKS---GGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well as bifunctional m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains the bifunctional DH/cyclohydrolase. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. Length = 168

>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

 Score =  241 bits (618), Expect = 3e-82
 Identities = 91/170 (53%), Positives = 119/170 (70%), Gaps = 11/170 (6%)

Query: 43  HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 102
           HP+N+G L +   EP F+PCTP+G +ELL R G+++ GKN VVIGRSNIVG P +LLL  
Sbjct: 1   HPINLGRLVLG--EPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLN 58

Query: 103 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 162
            +ATV++ H+ TK+  +IT EADIV+ A G   L++  W+KPGAVV+DVG   V+     
Sbjct: 59  ANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE----- 113

Query: 163 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 212
                 +L+GDV +E     AS ITPVPGGVGPMTVAMLL NT+++AKR 
Sbjct: 114 ----NGKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQ 159

Length = 160

>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

 Score =  239 bits (613), Expect = 8e-80
 Identities = 99/190 (52%), Positives = 127/190 (66%), Gaps = 11/190 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           HLDE K+L A+  EKDVDGFHP N+G LA    EP F+PCTP G + LL   G+++ GKN
Sbjct: 101 HLDEQKLLQAIDPEKDVDGFHPYNLGKLA--QGEPGFLPCTPAGIMTLLEEYGIDLRGKN 158

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
            VV+GRSNIVG P +LLL   +ATV++ H+ TK+   IT  ADIV+ A G  + ++   +
Sbjct: 159 VVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMV 218

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           KPGAVV+DVG   V+           +L+GDV ++     AS ITPVPGGVGPMTVAMLL
Sbjct: 219 KPGAVVIDVGINRVN---------DGKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLL 269

Query: 203 SNTLDSAKRA 212
            NTL +A+R 
Sbjct: 270 ENTLKAAERQ 279

Length = 283

>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  220 bits (563), Expect = 3e-72
 Identities = 93/205 (45%), Positives = 129/205 (62%), Gaps = 18/205 (8%)

Query: 17  RIHQLM-------HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 69
           RI+ ++       H+DE  +++ +S EKDVDGFHP+N+G + +   +  F+PCTP G +E
Sbjct: 90  RINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMMLG--QDTFLPCTPHGILE 147

Query: 70  LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 129
           LL    ++I GK+ VV+GRSNIVG P   LL   +ATV+  H+ TKN  ++T +ADI+I 
Sbjct: 148 LLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIV 207

Query: 130 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 189
           A G   L+    +K GAVV+DVG   +        E G  L GDV ++     AS ITPV
Sbjct: 208 AVGKPKLITADMVKEGAVVIDVGVNRL--------ENGK-LCGDVDFDNVKEKASYITPV 258

Query: 190 PGGVGPMTVAMLLSNTLDSAKRAYG 214
           PGGVGPMT+ ML+ NT++ AKRA G
Sbjct: 259 PGGVGPMTITMLMHNTVELAKRAGG 283

Length = 284

>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  217 bits (554), Expect = 9e-71
 Identities = 96/195 (49%), Positives = 127/195 (65%), Gaps = 10/195 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           HLD   ++ A+  EKDVDG H +N G LA    E   +PCTP GC+ LL R   ++ G N
Sbjct: 103 HLDSEAVIQAIDPEKDVDGLHVVNAGRLA--TGETALVPCTPLGCMMLLRRVHGDLSGLN 160

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVVIGRSN+VG P + LL   +ATV+I H+ T++   +   ADI++AA G   +V+G W+
Sbjct: 161 AVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWI 220

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGY---RLMGDVCYEEAMRLASVITPVPGGVGPMTVA 199
           KPGA V+DVG     ++  P+ E G    RL+GDV + EA  +A  ITPVPGGVGPMT+A
Sbjct: 221 KPGATVIDVG-----INRIPAPEKGEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIA 275

Query: 200 MLLSNTLDSAKRAYG 214
            LL+NTL +A RA G
Sbjct: 276 CLLANTLTAACRAAG 290

Length = 296

>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  209 bits (534), Expect = 7e-68
 Identities = 90/187 (48%), Positives = 116/187 (62%), Gaps = 11/187 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+D  K+L+ +  +KDVDGFHP N+G LA R   PL  PCTP+G + LL R G++  G N
Sbjct: 104 HIDNVKVLERIHPDKDVDGFHPYNVGRLAQR--IPLLRPCTPRGIMTLLERYGIDTYGLN 161

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVV+G SNIVG P SL L     TV++ H  TKN       AD+++ A G    + G W+
Sbjct: 162 AVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWI 221

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           KPGA+V+DVG   ++           +L+GDV +E A   AS ITPVPGGVGPMTVA LL
Sbjct: 222 KPGAIVIDVGINRLEDG---------KLVGDVEFETAAERASWITPVPGGVGPMTVATLL 272

Query: 203 SNTLDSA 209
            NTL + 
Sbjct: 273 ENTLQAC 279

Length = 285

>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  204 bits (520), Expect = 1e-65
 Identities = 96/192 (50%), Positives = 128/192 (66%), Gaps = 7/192 (3%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           HLDE  +L A+  +KD DG HPLN+G L ++G EP    CTP G + LL    ++I GK 
Sbjct: 103 HLDEVPLLHAIDPDKDADGLHPLNLGRL-VKG-EPGLRSCTPAGVMRLLRSQQIDIAGKK 160

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVV+GRS +VG P +L+L   +ATV+I H+ T++   IT EADI++AAAG  NL+    +
Sbjct: 161 AVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMV 220

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           KPGAVV+DVG     +   PS +   RL GDV +EE   +A+ ITPVPGGVGPMTV MLL
Sbjct: 221 KPGAVVVDVG-----IHRLPSSDGKTRLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLL 275

Query: 203 SNTLDSAKRAYG 214
            NT+ S ++ +G
Sbjct: 276 VNTVLSWQKRHG 287

Length = 297

>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  202 bits (515), Expect = 6e-65
 Identities = 99/196 (50%), Positives = 126/196 (64%), Gaps = 7/196 (3%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
            +DE  +  A+   KDVDGFHP N+G L M   +  F+ CTP G +ELL R  +E  GK+
Sbjct: 102 QIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKH 161

Query: 83  AVVIGRSNIVGLP-TSLLLQRHHA---TVSIVHALTKNPEQITSEADIVIAAAGVANLVR 138
            VV+GRSNIVG P  +L+LQ+      TV+I H+ TK+    T +ADI+IAA G A  + 
Sbjct: 162 CVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFIT 221

Query: 139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV 198
              +KPGAVV+DVG   ++   DPS + GYRL+GDV YE     AS ITPVPGGVGPMT+
Sbjct: 222 ADMVKPGAVVIDVGINRIE---DPSTKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTI 278

Query: 199 AMLLSNTLDSAKRAYG 214
           AMLL NTL S +R   
Sbjct: 279 AMLLKNTLQSFERVNN 294

Length = 295

>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  201 bits (513), Expect = 1e-64
 Identities = 91/192 (47%), Positives = 125/192 (65%), Gaps = 11/192 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+D  K+++A++ EKDVDGFH  N G L M G +PLF PCTP G +++L   G+ + G +
Sbjct: 103 HIDSHKVIEAIAPEKDVDGFHVANAGAL-MTG-QPLFRPCTPYGVMKMLESIGIPLRGAH 160

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVVIGRSNIVG P ++LL +  ATV+I H+ T++    T +ADIV+AA G  N++    +
Sbjct: 161 AVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMV 220

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           KPGA V+DVG    D           +L GDV +     +A  ITPVPGGVGPMT+ MLL
Sbjct: 221 KPGATVIDVGMNRDDAG---------KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLL 271

Query: 203 SNTLDSAKRAYG 214
            NT+++A+RA  
Sbjct: 272 VNTIEAAERAAA 283

Length = 285

>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  196 bits (499), Expect = 1e-62
 Identities = 86/188 (45%), Positives = 115/188 (61%), Gaps = 11/188 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+D   +L+A+   KDVDGFHPLNIG L     +  F+P TP G + LL    +EI GK+
Sbjct: 102 HIDTKMVLEAIDPNKDVDGFHPLNIGKLCS-QLDG-FVPATPMGVMRLLKHYHIEIKGKD 159

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
            V+IG SNIVG P ++L+    A+VS+ H LTK+    T  ADIV    G  +L++ S +
Sbjct: 160 VVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMV 219

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K GAVV+D+G   ++           RL+GDV +E     AS ITPVPGGVGPMT+  LL
Sbjct: 220 KKGAVVVDIGINRLNDG---------RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLL 270

Query: 203 SNTLDSAK 210
            NTL +A+
Sbjct: 271 ENTLIAAE 278

Length = 285

>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  196 bits (499), Expect = 1e-62
 Identities = 97/197 (49%), Positives = 128/197 (64%), Gaps = 7/197 (3%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H++E K+L+A+  +KDVDGFHP+N+G L + G E  F+PCTP G  E+L+RSGVE  G  
Sbjct: 104 HINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAE 163

Query: 83  AVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVR 138
            VV+GRSNIVG P + ++ +     +ATV+IVH  +KN  +    ADI+I AAGV NLV+
Sbjct: 164 VVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVK 223

Query: 139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV 198
             W+KPGA V+DVG   V  +          L GDV ++    +A  ITPVPGGVGPMT+
Sbjct: 224 PEWIKPGATVIDVGVNRVGTNESTGKAI---LSGDVDFDAVKEIAGKITPVPGGVGPMTI 280

Query: 199 AMLLSNTLDSAKRAYGF 215
           AML+ NTL SAK     
Sbjct: 281 AMLMRNTLKSAKFHLSL 297

Length = 297

>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  193 bits (492), Expect = 1e-61
 Identities = 92/189 (48%), Positives = 128/189 (67%), Gaps = 11/189 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H++E KIL A+  +KDVDGFHP+N G+L   GR P+ IPCTP G +E+     VE+ GK+
Sbjct: 103 HINEEKILLAIDPKKDVDGFHPMNTGHL-WSGR-PVMIPCTPAGIMEMFREYNVELEGKH 160

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVVIGRSNIVG P + LL   +ATV++ H+ T+N  ++  +ADI++ A G  + V   ++
Sbjct: 161 AVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFV 220

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K GAVV+DVG     ++ D   E G +L+GDV ++E   +AS ITPVPGGVGPMT+ ML+
Sbjct: 221 KEGAVVIDVG-----MNRD---ENG-KLIGDVDFDEVAEVASYITPVPGGVGPMTITMLM 271

Query: 203 SNTLDSAKR 211
             T  +A R
Sbjct: 272 EQTYQAALR 280

Length = 284

>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  190 bits (484), Expect = 3e-60
 Identities = 95/196 (48%), Positives = 122/196 (62%), Gaps = 10/196 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+D+ ++L  +   KDVDGFHP N+G L     +  F PCTP G  +LL  +GV+  G +
Sbjct: 102 HVDDREVLRRIDPAKDVDGFHPENVGRLV--AGDARFKPCTPHGIQKLLAAAGVDTEGAD 159

Query: 83  AVVIGRSNIVGLP-TSLLLQRHH---ATVSIVHALTKNPEQITSEADIVIAAAGVANLVR 138
            VV+GRS+IVG P  +LL+Q+     ATV++ H+ T +    T  ADIV+AAAGV  L+ 
Sbjct: 160 VVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELID 219

Query: 139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV 198
           GS L  GA V+DVG       VD   E GY L+GDV +E A   AS ITPVPGGVGPMT 
Sbjct: 220 GSMLSEGATVIDVGIN----RVDADTEKGYELVGDVEFESAKEKASAITPVPGGVGPMTR 275

Query: 199 AMLLSNTLDSAKRAYG 214
           AMLL NT+ +A    G
Sbjct: 276 AMLLYNTVKAASLQEG 291

Length = 297

>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  189 bits (480), Expect = 6e-60
 Identities = 96/200 (48%), Positives = 138/200 (69%), Gaps = 11/200 (5%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IEL+  
Sbjct: 93  ILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKS 150

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ A G+
Sbjct: 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGL 210

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
           A  V+  ++KPGA+V+DVG            +   +L GDV +++ +  A  ITPVPGGV
Sbjct: 211 AKFVKKDYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITPVPGGV 261

Query: 194 GPMTVAMLLSNTLDSAKRAY 213
           GPMT+ MLL+NTL +AKR +
Sbjct: 262 GPMTITMLLANTLKAAKRIW 281

Length = 284

>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  189 bits (481), Expect = 8e-60
 Identities = 88/195 (45%), Positives = 126/195 (64%), Gaps = 9/195 (4%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+ E K+++A+   KDVDGFHP+N+G +++    P F+  TP G +ELL R  +E  GK 
Sbjct: 102 HISEQKVIEAIDYRKDVDGFHPINVGRMSIG--LPCFVSATPNGILELLKRYHIETSGKK 159

Query: 83  AVVIGRSNIVGLP-TSLLLQRHH---ATVSIVHALTKNPEQITSEADIVIAAAGVANLVR 138
            VV+GRSNIVG P   L++Q+ +    TV++ H+ +KN ++   EADI+IAA G    V+
Sbjct: 160 CVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVK 219

Query: 139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV 198
              +K GAVV+DVGT  V    D + + G++L GDV ++E     S ITPVPGGVGPMT+
Sbjct: 220 ADMVKEGAVVIDVGTTRVP---DATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTI 276

Query: 199 AMLLSNTLDSAKRAY 213
             L+ NTL + K+A 
Sbjct: 277 VSLMKNTLLAGKKAI 291

Length = 293

>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  184 bits (469), Expect = 6e-58
 Identities = 91/189 (48%), Positives = 131/189 (69%), Gaps = 10/189 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+DE ++L A++  KDVDGFH  N+G L+ +GR+ L  PCTP GC+ LL  +  ++ GK+
Sbjct: 104 HIDEARVLQAINPLKDVDGFHSENVGGLS-QGRDVL-TPCTPSGCLRLLEDTCGDLTGKH 161

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVVIGRSNIVG P + LL + H +V++VH+ + + + +  +ADIV+AA G   L+   WL
Sbjct: 162 AVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWL 221

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGY-RLMGDVCYEEAMRLASVITPVPGGVGPMTVAML 201
           KPGAVV+DVG   +D       + G  RL+GDV ++ A+ + S ITPVPGGVGPMT+A L
Sbjct: 222 KPGAVVIDVGINRID-------DDGRSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFL 274

Query: 202 LSNTLDSAK 210
           + NT+ +A+
Sbjct: 275 MKNTVTAAR 283

Length = 301

>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  183 bits (466), Expect = 1e-57
 Identities = 84/187 (44%), Positives = 120/187 (64%), Gaps = 6/187 (3%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+D+  I++ +  EKDVDGFH  N+G L    ++   IPCTPKGC+ L+      + G +
Sbjct: 103 HIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSD 162

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVVIGRSNIVG P + LL   + TV+ VH+ T++     S+ADI++AA G+ N V+ SW+
Sbjct: 163 AVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWI 222

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K GA+V+DVG   ++           + +GDV + E  + AS ITPVPGGVGPMT+A L+
Sbjct: 223 KKGAIVIDVGINSIEE------GGVKKFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLM 276

Query: 203 SNTLDSA 209
            NT+ +A
Sbjct: 277 VNTVIAA 283

Length = 294

>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  182 bits (463), Expect = 3e-57
 Identities = 89/197 (45%), Positives = 117/197 (59%), Gaps = 20/197 (10%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           HLDE  +L+ +   KD DG HP N+G L +    PL  PCTP+G + LL R  VE+ G +
Sbjct: 103 HLDENAVLERIDPAKDADGLHPTNLGRLVLNEPAPL--PCTPRGIVHLLRRYDVELAGAH 160

Query: 83  AVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGS 140
            VVIGR   VG P  LLL R    ATV++ H  T++    T  ADI++AAAGVA+LV   
Sbjct: 161 VVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTAD 220

Query: 141 WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDV---CYEEAMRLASVITPVPGGVGPMT 197
            +KPGA VLDVG   V  + D       +L+GDV    +E    +A  ++P PGGVGPMT
Sbjct: 221 MVKPGAAVLDVG---VSRAGD------GKLVGDVHPDVWE----VAGAVSPNPGGVGPMT 267

Query: 198 VAMLLSNTLDSAKRAYG 214
            A LL+N ++ A+R  G
Sbjct: 268 RAFLLTNVVERAERRAG 284

Length = 284

>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  180 bits (458), Expect = 2e-56
 Identities = 90/203 (44%), Positives = 132/203 (65%), Gaps = 11/203 (5%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++     + E KIL+A++ EKDVDGFHP+NIG L +   E  F+PCTP G +E+L  
Sbjct: 94  ILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYID--EQTFVPCTPLGIMEILKH 151

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           + +++ GKNAVVIGRS+IVG P S LL + +A+V+I+H+ +K+      +AD++++A G 
Sbjct: 152 ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGK 211

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
             LV    +K GAV++DVG  P         E G +L GDV Y+    +A  ITPVPGGV
Sbjct: 212 PGLVTKDVVKEGAVIIDVGNTPD--------ENG-KLKGDVDYDAVKEIAGAITPVPGGV 262

Query: 194 GPMTVAMLLSNTLDSAKRAYGFT 216
           GP+T+ M+L+NTL + K   G  
Sbjct: 263 GPLTITMVLNNTLLAEKMRRGID 285

Length = 286

>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  175 bits (445), Expect = 2e-54
 Identities = 83/191 (43%), Positives = 120/191 (62%), Gaps = 12/191 (6%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           HLD  + ++A+   KD DGFHP N+G L M G E   +PCTP G I  L   GV+I GKN
Sbjct: 109 HLDPQEAMEAIDPAKDADGFHPYNMGKL-MIGDEG-LVPCTPHGVIRALEEYGVDIEGKN 166

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AV++G SN+VG P + +L   +ATVS+ H  T + ++ T +ADI++ A GV +L++   +
Sbjct: 167 AVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMV 226

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K GAV+ DVG    +  V           GDV +E  ++ AS+ITPVPGGVGP+T+AML+
Sbjct: 227 KEGAVIFDVGITKEEDKV----------YGDVDFENVIKKASLITPVPGGVGPLTIAMLM 276

Query: 203 SNTLDSAKRAY 213
            + L  A+++ 
Sbjct: 277 KHVLMCAEKSL 287

Length = 287

>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  175 bits (444), Expect = 2e-54
 Identities = 90/192 (46%), Positives = 121/192 (63%), Gaps = 8/192 (4%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+D  ++L+A+   KDVDGFHPLN+G L M G E L  PCTP G + LL   G+ + GK 
Sbjct: 100 HIDFQRVLEAIDPLKDVDGFHPLNVGRLWM-GGEALE-PCTPAGVVRLLKHYGIPLAGKE 157

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
            VV+GRSNIVG P + LL R  ATV++ H+ T++   +T  AD+++ A G  +L+    +
Sbjct: 158 VVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMV 217

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           +PGAVV+DVG   V             L GDV  E A  +A  +TPVPGGVGPMTVAML+
Sbjct: 218 RPGAVVVDVGINRV-----GGNGGRDILTGDVHPEVA-EVAGALTPVPGGVGPMTVAMLM 271

Query: 203 SNTLDSAKRAYG 214
           +NT+ +A R  G
Sbjct: 272 ANTVIAALRRRG 283

Length = 287

>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  174 bits (442), Expect = 4e-54
 Identities = 87/191 (45%), Positives = 111/191 (58%), Gaps = 16/191 (8%)

Query: 24  LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
           LD  + L+ +   KDVDGFHP N+G LA+    P F PCTP G + LL R G+   GK A
Sbjct: 103 LDSQRCLELIDPAKDVDGFHPENMGRLALG--LPGFRPCTPAGVMTLLERYGLSPAGKKA 160

Query: 84  VVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 139
           VV+GRSNIVG P +L+L       +ATV++ H+ T +  +   EAD +  A G    V  
Sbjct: 161 VVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTA 220

Query: 140 SWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVA 199
             +KPGAVV+DVG    D            L+GD  +E    +AS ITPVPGGVGPMT+A
Sbjct: 221 DMVKPGAVVVDVGINRTDDG----------LVGDCDFEGLSDVASAITPVPGGVGPMTIA 270

Query: 200 MLLSNTLDSAK 210
            LL NT+ S K
Sbjct: 271 QLLVNTVQSWK 281

Length = 286

>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  173 bits (439), Expect = 9e-54
 Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 12/197 (6%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLDE KI + +   KD+D    +++G       E  F+PCTP   I L+  
Sbjct: 94  IMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPNSVITLIKS 151

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
             ++I GK  VVIGRSNIVG P + LL   +ATV+I H+ TKN +++  +ADI++ A G 
Sbjct: 152 LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIGR 211

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
              +   ++K GA+V+DVGT  V+           ++ GDV +++ +  AS ITPVPGGV
Sbjct: 212 PKFIDEEYVKEGAIVIDVGTSSVN----------GKITGDVNFDKVIDKASYITPVPGGV 261

Query: 194 GPMTVAMLLSNTLDSAK 210
           G +T  +L+ N  ++ K
Sbjct: 262 GSLTTTLLIKNVCEALK 278

Length = 278

>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  173 bits (439), Expect = 1e-53
 Identities = 91/197 (46%), Positives = 125/197 (63%), Gaps = 11/197 (5%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    H+D  KIL+A+  +KDVDGFHP N+G L + G +  F+PCTP G +ELL  
Sbjct: 93  ILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRL-VTGLDG-FVPCTPLGVMELLEE 150

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
             +++ GK+  V+G SNIVG P + LL   +ATV I H  TK+ +  T +ADIVI   G 
Sbjct: 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVGK 210

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NL+    +K GA+V+D+G    +           RL+GDV +E   +  S ITPVPGGV
Sbjct: 211 PNLITEDMVKEGAIVIDIGINRTEDG---------RLVGDVDFENVAKKCSYITPVPGGV 261

Query: 194 GPMTVAMLLSNTLDSAK 210
           GPMT+AMLLSNTL +AK
Sbjct: 262 GPMTIAMLLSNTLKAAK 278

Length = 281

>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  173 bits (439), Expect = 1e-53
 Identities = 88/197 (44%), Positives = 129/197 (65%), Gaps = 10/197 (5%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    H+ +  IL+++   KDVDGFHP+N+G L + G E  F+PCTP G ++LL  
Sbjct: 92  ILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLGVMKLLKA 150

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
             +++ GK+AV+IG SNIVG P + +L    ATVS+ H  TK+    T +AD++I AAG 
Sbjct: 151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGC 210

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            NL+R   +K G +V+DVG   ++           +++GDV +EE  + +S ITPVPGGV
Sbjct: 211 VNLLRSDMVKEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYITPVPGGV 261

Query: 194 GPMTVAMLLSNTLDSAK 210
           GPMT+AMLL NT+ SAK
Sbjct: 262 GPMTIAMLLENTVKSAK 278

Length = 282

>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  171 bits (434), Expect = 6e-53
 Identities = 93/198 (46%), Positives = 128/198 (64%), Gaps = 10/198 (5%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    H+DE  +LDA+S  KD DGFHP N+G L++ G   +  PCTP G + +L  
Sbjct: 92  ILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSI-GIAGVPRPCTPAGVMRMLDE 150

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           + V+  GK A+V+GRSNIVG P +++L   HATV+I H+ T +       ADI++AA G 
Sbjct: 151 ARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGK 210

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
           A LV+G+W+K GAVV+DVG   +            +L+GDV +  A   AS ITPVPGGV
Sbjct: 211 AELVKGAWVKEGAVVIDVGMNRLADG---------KLVGDVEFAAAAARASAITPVPGGV 261

Query: 194 GPMTVAMLLSNTLDSAKR 211
           GPMT AMLL NT++ AKR
Sbjct: 262 GPMTRAMLLVNTVELAKR 279

Length = 282

>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  170 bits (431), Expect = 2e-52
 Identities = 90/202 (44%), Positives = 128/202 (63%), Gaps = 9/202 (4%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLD   IL A+S +KDVDG HP+N+G L + G    FIPCTP G IELL  
Sbjct: 88  ILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLL-GETDGFIPCTPAGIIELLKY 146

Query: 74  SGVEIMGKNAVVIGRSNIVGLP-TSLLLQRH---HATVSIVHALTKNPEQITSEADIVIA 129
             + + G++  ++GRSNIVG P  +LL+Q+H   +ATV+++H+ ++N  +I   ADI+IA
Sbjct: 147 YEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIA 206

Query: 130 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 189
           A GV   ++   +   AV++DVGT  V  +       GY L+GDV +   +     ITPV
Sbjct: 207 AIGVPLFIKEEMIAEKAVIVDVGTSRVPAANPK----GYILVGDVDFNNVVPKCRAITPV 262

Query: 190 PGGVGPMTVAMLLSNTLDSAKR 211
           PGGVGPMTVAML+ NT +S  R
Sbjct: 263 PGGVGPMTVAMLMRNTWESYLR 284

Length = 287

>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  169 bits (430), Expect = 2e-52
 Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 12/187 (6%)

Query: 24  LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
           +D  +++ A+  EKDVDGFHPLN+G L + G  P F PCTP G + LL    + I GK A
Sbjct: 98  VDTERVIAAILPEKDVDGFHPLNLGRL-VSGL-PGFAPCTPNGIMTLLHEYKISIAGKRA 155

Query: 84  VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
           VV+GRS  VG P + LL    ATV+I H+ T+N +    +ADI+++AAG A  +    +K
Sbjct: 156 VVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVK 215

Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
           PGA V+DVG   V+           +L GDV ++    +A  ITPVPGGVGPMT+A L+ 
Sbjct: 216 PGATVIDVGINQVN----------GKLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLME 265

Query: 204 NTLDSAK 210
           NT D+AK
Sbjct: 266 NTFDAAK 272

Length = 279

>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  165 bits (420), Expect = 9e-51
 Identities = 86/200 (43%), Positives = 121/200 (60%), Gaps = 10/200 (5%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           II+++     +D+ KIL AVS  KD+DGFHPLN+G L   G    FIPCT  GC+ ++ +
Sbjct: 94  IIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYL-HSGISQGFIPCTALGCLAVIKK 152

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
               + GKN V+IGRSNIVG P S LL + + +V+I H+ T N   ITS+ADIV+AA G 
Sbjct: 153 YEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIGS 212

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
              +   +  P ++V+DVG   +          G +++GDV +E        ITPVPGG+
Sbjct: 213 PLKLTAEYFNPESIVIDVGINRIS---------GNKIIGDVDFENVKSKVKYITPVPGGI 263

Query: 194 GPMTVAMLLSNTLDSAKRAY 213
           GPMT+A LL NT+ + K + 
Sbjct: 264 GPMTIAFLLKNTVKAFKDSL 283

Length = 288

>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  158 bits (402), Expect = 4e-48
 Identities = 84/188 (44%), Positives = 118/188 (62%), Gaps = 11/188 (5%)

Query: 24  LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
           LDE  ++DA+  +KDVDGF P+++G L     EP  +  TP G + LL    +++ GK  
Sbjct: 102 LDEQAVIDAIDPDKDVDGFSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGKRV 159

Query: 84  VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
           V++GRSNIVG P + L+  H ATV+I H+ T+N +Q+T EADI++ A GV + +    +K
Sbjct: 160 VIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVK 219

Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
           PGAVV+DVG   +    D        L+GDV       +AS ITPVPGGVGPMT+A L++
Sbjct: 220 PGAVVIDVG---ISRGADGK------LLGDVDEAAVAPIASAITPVPGGVGPMTIASLMA 270

Query: 204 NTLDSAKR 211
            T+  AKR
Sbjct: 271 QTVTLAKR 278

Length = 282

>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  156 bits (395), Expect = 4e-47
 Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 12/192 (6%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
            +DE    DA+SL KDVDG   L  G +AM   E  +   TP G + LL    +E+ GK+
Sbjct: 104 QIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNIELAGKH 161

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVV+GRS I+G P +++L   +ATV+I H+ T+N  ++  +ADI++ A G   L++  W+
Sbjct: 162 AVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWI 221

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K GAVV+D G  P D             +GD+  +    +AS  TPVPGGVGPMT+  L+
Sbjct: 222 KQGAVVVDAGFHPRDGGG----------VGDIELQGIEEIASAYTPVPGGVGPMTINTLI 271

Query: 203 SNTLDSAKRAYG 214
             T+++A++A G
Sbjct: 272 RQTVEAAEKALG 283

Length = 283

>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  147 bits (373), Expect = 7e-44
 Identities = 81/190 (42%), Positives = 115/190 (60%), Gaps = 15/190 (7%)

Query: 24  LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
           +DE    D ++LEKDVDG   L+ G L+M G E  ++PCTP G + LL   G+++ GKNA
Sbjct: 105 IDERAAFDRIALEKDVDGVTTLSFGKLSM-GVET-YLPCTPYGMVLLLKEYGIDVTGKNA 162

Query: 84  VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
           VV+GRS I+G P ++LL   +ATV++ H+ T+N   I  +ADI++ A G    ++  W+ 
Sbjct: 163 VVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWIS 222

Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
            GAV+LD G  P +V             GD+   +A   +S  TPVPGGVGPMT+A+LL 
Sbjct: 223 EGAVLLDAGYNPGNV-------------GDIEISKAKDKSSFYTPVPGGVGPMTIAVLLL 269

Query: 204 NTLDSAKRAY 213
            TL S K  +
Sbjct: 270 QTLYSFKEHF 279

Length = 284

>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  146 bits (369), Expect = 3e-43
 Identities = 79/197 (40%), Positives = 116/197 (58%), Gaps = 11/197 (5%)

Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    H+++  ++ ++  EKDVDGFHP N+G L +R ++ L   CTPKG + +L  
Sbjct: 93  ILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLE-SCTPKGIMTMLRE 151

Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
            G++  G  AVV+G SN+VG P S LL    ATV+  H  T + +  T++ADI+I A G 
Sbjct: 152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGK 211

Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            N +    +K GAVV+DVG   VD           +++GDV +       + ITPVPGGV
Sbjct: 212 PNFITADMVKEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAAITPVPGGV 261

Query: 194 GPMTVAMLLSNTLDSAK 210
           GPMT+  LL NT   A+
Sbjct: 262 GPMTITELLYNTFQCAQ 278

Length = 282

>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

 Score =  103 bits (258), Expect = 3e-28
 Identities = 51/158 (32%), Positives = 72/158 (45%), Gaps = 25/158 (15%)

Query: 60  IPCTPKGC-------IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 112
            PCTP           ELL + GV + GK  +V+GRS IVG P   LLQR  ATV     
Sbjct: 1   GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60

Query: 113 LTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMG 172
            T   +    +AD+V+  +     V   W+KPGA V++            S         
Sbjct: 61  KTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINC-----------SPTK------ 103

Query: 173 DVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 210
            +  ++    AS+  P+ GGVG +TVAM + N + S +
Sbjct: 104 -LSGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, mono-functional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express a monofunctional DH. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 140

>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of methylene-tetrahydrofolate dehydrogenase

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 50/210 (23%), Positives = 72/210 (34%), Gaps = 59/210 (28%)

Query: 35  LEKDVDGFHPLNIGNLAMRGR----EPLF---IPCTPKGCIELL---------IRSGVEI 78
             KDV+G     I NL    R    E      +PCTP   +++L         +  G  +
Sbjct: 1   PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRL 60

Query: 79  MGKNAVVIGRSNIVGLPTSLLLQRHHATV-SI--------------------VHALTKNP 117
            GK   +I RS +VG P + LL    A V S+                    V       
Sbjct: 61  YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMT 120

Query: 118 EQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCY 176
               S++D+VI      N  V    LK GA+ ++  +                       
Sbjct: 121 LDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKNFE------------------ 162

Query: 177 EEAMRLASVITPVPGGVGPMTVAMLLSNTL 206
                 AS+  P    +G +T+AMLL N L
Sbjct: 163 PSVKEKASIYVPS---IGKVTIAMLLRNLL 189

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional DHs from S. cerevisiae and certain bacteria. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 197

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	100.0
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	100.0
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	100.0
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	100.0
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	100.0
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
KOG0089	309	consensus Methylenetetrahydrofolate dehydrogenase/	100.0
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	100.0
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	100.0
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	100.0
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	100.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	99.96
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	99.95
PRK12548	289	shikimate 5-dehydrogenase; Provisional	99.95
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	99.95
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	99.95
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	99.95
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	99.95
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	99.94
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	99.93
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	99.92
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	99.9
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.65
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.61
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.56
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	99.45
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	99.29
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	99.25
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	99.23
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.21
PRK13940	414	glutamyl-tRNA reductase; Provisional	99.19
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	99.17
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.06
PRK14982	340	acyl-ACP reductase; Provisional	98.99
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.95
PLN00203	519	glutamyl-tRNA reductase	98.86
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.79
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.76
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.73
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.64
PF00763	117	THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cycloh	98.63
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.61
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.58
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.58
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.56
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.46
PLN02494	477	adenosylhomocysteinase	98.45
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.43
PRK08291	330	ectoine utilization protein EutC; Validated	98.33
PLN02928	347	oxidoreductase family protein	98.3
COG5322	351	Predicted dehydrogenase [General function predicti	98.28
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.21
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.2
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.18
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.14
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.13
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	98.13
PRK13243	333	glyoxylate reductase; Reviewed	98.13
PRK08618	325	ornithine cyclodeaminase; Validated	98.12
PRK06141	314	ornithine cyclodeaminase; Validated	98.06
PRK07340	304	ornithine cyclodeaminase; Validated	98.06
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	98.05
PRK06932	314	glycerate dehydrogenase; Provisional	98.04
PRK06487	317	glycerate dehydrogenase; Provisional	98.03
PRK07574	385	formate dehydrogenase; Provisional	98.03
PRK06436	303	glycerate dehydrogenase; Provisional	98.02
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.01
PRK12480	330	D-lactate dehydrogenase; Provisional	98.0
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.98
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.96
PRK08605	332	D-lactate dehydrogenase; Validated	97.96
PLN02306	386	hydroxypyruvate reductase	97.9
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.87
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.87
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.87
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.87
PLN03139	386	formate dehydrogenase; Provisional	97.87
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.86
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.81
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.77
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.76
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.74
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.74
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.69
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.65
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.63
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.61
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.6
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.58
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.57
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.55
PRK06823	315	ornithine cyclodeaminase; Validated	97.53
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	97.48
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.46
PRK06046	326	alanine dehydrogenase; Validated	97.46
PRK06407	301	ornithine cyclodeaminase; Provisional	97.44
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	97.41
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.4
PRK12862	763	malic enzyme; Reviewed	97.39
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.37
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.36
PLN02256	304	arogenate dehydrogenase	97.35
PLN02712	667	arogenate dehydrogenase	97.34
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.33
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.32
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.31
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	97.31
PRK07589	346	ornithine cyclodeaminase; Validated	97.3
PRK12861	764	malic enzyme; Reviewed	97.29
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.27
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.24
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	97.24
PLN03129	581	NADP-dependent malic enzyme; Provisional	97.2
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.2
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	97.15
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.14
COG0281	432	SfcA Malic enzyme [Energy production and conversio	97.11
PRK13403	335	ketol-acid reductoisomerase; Provisional	97.08
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.06
PRK06545	359	prephenate dehydrogenase; Validated	97.06
PRK07417	279	arogenate dehydrogenase; Reviewed	97.04
PRK08818	370	prephenate dehydrogenase; Provisional	96.98
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.97
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.95
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.94
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.94
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.94
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.9
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.89
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.89
PRK13529	563	malate dehydrogenase; Provisional	96.88
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.86
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.85
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.84
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.83
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.82
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.81
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.8
PRK08655	437	prephenate dehydrogenase; Provisional	96.79
PRK10637	457	cysG siroheme synthase; Provisional	96.78
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.77
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.74
PRK06199	379	ornithine cyclodeaminase; Validated	96.74
PTZ00317	559	NADP-dependent malic enzyme; Provisional	96.71
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.68
PRK06398	258	aldose dehydrogenase; Validated	96.65
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.63
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.63
PRK06949	258	short chain dehydrogenase; Provisional	96.62
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.62
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.6
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.59
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.59
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	96.57
PLN02688	266	pyrroline-5-carboxylate reductase	96.56
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.55
PRK08507	275	prephenate dehydrogenase; Validated	96.55
PRK08223	287	hypothetical protein; Validated	96.54
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.53
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.52
PRK12367	245	short chain dehydrogenase; Provisional	96.51
PRK06523	260	short chain dehydrogenase; Provisional	96.5
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.49
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.48
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.47
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.46
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.44
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.44
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.43
PRK09072	263	short chain dehydrogenase; Provisional	96.43
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.41
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.36
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.36
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.34
PLN02712	667	arogenate dehydrogenase	96.34
PRK08862	227	short chain dehydrogenase; Provisional	96.32
PRK02102	331	ornithine carbamoyltransferase; Validated	96.32
PLN02342	348	ornithine carbamoyltransferase	96.31
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.31
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.3
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.3
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.3
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.3
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.29
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	96.29
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.28
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.28
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.27
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.27
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.27
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.26
PRK05866	293	short chain dehydrogenase; Provisional	96.26
PTZ00117	319	malate dehydrogenase; Provisional	96.25
PRK12828	239	short chain dehydrogenase; Provisional	96.25
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.24
PRK14804	311	ornithine carbamoyltransferase; Provisional	96.24
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.22
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.22
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	96.21
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.21
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.2
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.2
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.19
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.19
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.17
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	96.17
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.17
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.16
PRK08339	263	short chain dehydrogenase; Provisional	96.16
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.15
PRK06172	253	short chain dehydrogenase; Provisional	96.13
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.13
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.12
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.1
PRK07062	265	short chain dehydrogenase; Provisional	96.09
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.09
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.08
PLN02858	1378	fructose-bisphosphate aldolase	96.07
PRK05867	253	short chain dehydrogenase; Provisional	96.07
PRK14805	302	ornithine carbamoyltransferase; Provisional	96.07
CHL00194	317	ycf39 Ycf39; Provisional	96.07
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.06
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.05
PLN02477	410	glutamate dehydrogenase	96.04
PRK05717	255	oxidoreductase; Validated	96.03
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.03
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.03
PRK07063	260	short chain dehydrogenase; Provisional	96.03
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.03
PRK08265	261	short chain dehydrogenase; Provisional	96.02
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.02
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.02
PRK07890	258	short chain dehydrogenase; Provisional	96.01
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.99
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	95.99
PRK06138	252	short chain dehydrogenase; Provisional	95.99
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.99
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.98
PRK06179	270	short chain dehydrogenase; Provisional	95.98
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.97
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.97
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.96
PRK08628	258	short chain dehydrogenase; Provisional	95.96
PRK06182	273	short chain dehydrogenase; Validated	95.96
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.96
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.95
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	95.94
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.94
PRK12829	264	short chain dehydrogenase; Provisional	95.94
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.94
PRK06057	255	short chain dehydrogenase; Provisional	95.93
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.92
PRK06841	255	short chain dehydrogenase; Provisional	95.91
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	95.91
PRK02255	338	putrescine carbamoyltransferase; Provisional	95.9
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.89
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.88
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.88
PRK14031	444	glutamate dehydrogenase; Provisional	95.87
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.86
PRK09186	256	flagellin modification protein A; Provisional	95.86
PRK09242	257	tropinone reductase; Provisional	95.85
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.85
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	95.84
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	95.82
PRK05225	487	ketol-acid reductoisomerase; Validated	95.81
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.81
PRK05854	313	short chain dehydrogenase; Provisional	95.81
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	95.81
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.79
PLN02514	357	cinnamyl-alcohol dehydrogenase	95.79
PLN02858	1378	fructose-bisphosphate aldolase	95.79
PRK05872	296	short chain dehydrogenase; Provisional	95.78
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.78
PRK07478	254	short chain dehydrogenase; Provisional	95.78
PRK07680	273	late competence protein ComER; Validated	95.77
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.77
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.76
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.76
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	95.76
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	95.74
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.73
PRK08703	239	short chain dehydrogenase; Provisional	95.73
PRK07060	245	short chain dehydrogenase; Provisional	95.72
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.7
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.69
PRK07825	273	short chain dehydrogenase; Provisional	95.69
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.68
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	95.68
PRK07035	252	short chain dehydrogenase; Provisional	95.68
COG2910	211	Putative NADH-flavin reductase [General function p	95.68
PRK06194	287	hypothetical protein; Provisional	95.67
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.66
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.66
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.65
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.64
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.64
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.63
PRK05876	275	short chain dehydrogenase; Provisional	95.62
PRK06125	259	short chain dehydrogenase; Provisional	95.62
PRK07856	252	short chain dehydrogenase; Provisional	95.61
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	95.61
PRK06196	315	oxidoreductase; Provisional	95.61
PRK07814	263	short chain dehydrogenase; Provisional	95.61
PRK07774	250	short chain dehydrogenase; Provisional	95.6
PRK06500	249	short chain dehydrogenase; Provisional	95.6
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.6
PRK08264	238	short chain dehydrogenase; Validated	95.6
PRK09291	257	short chain dehydrogenase; Provisional	95.59
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	95.59
PLN02427	386	UDP-apiose/xylose synthase	95.59
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.57
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	95.57
PRK08589	272	short chain dehydrogenase; Validated	95.57
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.56
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	95.56
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	95.54
PRK07067	257	sorbitol dehydrogenase; Provisional	95.54
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.54
PLN02214	342	cinnamoyl-CoA reductase	95.52
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.52
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.51
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.5
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.48
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	95.48
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	95.48
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	95.47
PRK07576	264	short chain dehydrogenase; Provisional	95.46
PLN02178	375	cinnamyl-alcohol dehydrogenase	95.46
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.45
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.44
PRK06139	330	short chain dehydrogenase; Provisional	95.44
PLN02527	306	aspartate carbamoyltransferase	95.44
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	95.44
PLN00198	338	anthocyanidin reductase; Provisional	95.42
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.41
PRK06114	254	short chain dehydrogenase; Provisional	95.41
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.41
PRK06223	307	malate dehydrogenase; Reviewed	95.39
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.38
KOG0725	270	consensus Reductases with broad range of substrate	95.38
PRK12939	250	short chain dehydrogenase; Provisional	95.38
PRK07411	390	hypothetical protein; Validated	95.38
PRK08936	261	glucose-1-dehydrogenase; Provisional	95.37
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.37
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.36
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.36
PLN02778	298	3,5-epimerase/4-reductase	95.35
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.33
PRK05875	276	short chain dehydrogenase; Provisional	95.33
PRK07326	237	short chain dehydrogenase; Provisional	95.32
PLN03209	576	translocon at the inner envelope of chloroplast su	95.3
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.28
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	95.28
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.28
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	95.26
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.26
PLN00106	323	malate dehydrogenase	95.25
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	95.24
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.24
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	95.23
PLN02253	280	xanthoxin dehydrogenase	95.22
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	95.22
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.22
PRK08192	338	aspartate carbamoyltransferase; Provisional	95.22
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	95.21
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.21
PLN02383	344	aspartate semialdehyde dehydrogenase	95.21
PRK12742	237	oxidoreductase; Provisional	95.2
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.19
PRK06197	306	short chain dehydrogenase; Provisional	95.19
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.17
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	95.16
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.14
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	95.14
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	95.14
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.12
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.1
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	95.08
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	95.08
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	95.06
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.06
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.05
PRK14030	445	glutamate dehydrogenase; Provisional	95.04
PRK05086	312	malate dehydrogenase; Provisional	95.02
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.02
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	95.01
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.0
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.99
PRK08278	273	short chain dehydrogenase; Provisional	94.99
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.99
PRK06914	280	short chain dehydrogenase; Provisional	94.98
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.97
PRK06153	393	hypothetical protein; Provisional	94.96
PRK08226	263	short chain dehydrogenase; Provisional	94.96
PRK07109	334	short chain dehydrogenase; Provisional	94.95
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	94.94
PRK08643	256	acetoin reductase; Validated	94.94
PRK09414	445	glutamate dehydrogenase; Provisional	94.92
PRK08263	275	short chain dehydrogenase; Provisional	94.91
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.9
PRK00779	304	ornithine carbamoyltransferase; Provisional	94.9
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	94.88
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	94.88
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	94.88
PRK07806	248	short chain dehydrogenase; Provisional	94.87
PRK06720	169	hypothetical protein; Provisional	94.86
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	94.86
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	94.84
PRK07677	252	short chain dehydrogenase; Provisional	94.84
PRK12779	944	putative bifunctional glutamate synthase subunit b	94.84
PRK06701	290	short chain dehydrogenase; Provisional	94.84
PRK05993	277	short chain dehydrogenase; Provisional	94.83
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	94.83
PRK12827	249	short chain dehydrogenase; Provisional	94.83
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	94.82
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	94.82
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.81
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	94.81
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.8
PRK09135	249	pteridine reductase; Provisional	94.8
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.8
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	94.78
PRK06483	236	dihydromonapterin reductase; Provisional	94.77
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.74
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	94.74
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	94.73
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.72
PRK12937	245	short chain dehydrogenase; Provisional	94.7
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	94.68
PRK08303	305	short chain dehydrogenase; Provisional	94.68
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	94.65
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.63
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.63
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	94.62
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.6
PRK08267	260	short chain dehydrogenase; Provisional	94.6
PRK09620	229	hypothetical protein; Provisional	94.59
PRK07791	286	short chain dehydrogenase; Provisional	94.58
PRK06444	197	prephenate dehydrogenase; Provisional	94.57
PRK07985	294	oxidoreductase; Provisional	94.57
PRK06198	260	short chain dehydrogenase; Provisional	94.57
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.57
PRK07577	234	short chain dehydrogenase; Provisional	94.56
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	94.54
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.54
PRK08328	231	hypothetical protein; Provisional	94.54
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	94.53
PRK07831	262	short chain dehydrogenase; Provisional	94.51
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.5
PRK06180	277	short chain dehydrogenase; Provisional	94.5
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.5
PLN02780	320	ketoreductase/ oxidoreductase	94.49
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	94.47
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	94.47
PRK07453	322	protochlorophyllide oxidoreductase; Validated	94.46
PLN02653	340	GDP-mannose 4,6-dehydratase	94.45
PRK11730	715	fadB multifunctional fatty acid oxidation complex	94.44
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	94.44
PRK06128	300	oxidoreductase; Provisional	94.44
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	94.44
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	94.44
KOG0409	327	consensus Predicted dehydrogenase [General functio	94.43
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.42
PRK08324	681	short chain dehydrogenase; Validated	94.41
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.4
PRK12744	257	short chain dehydrogenase; Provisional	94.39
PRK07454	241	short chain dehydrogenase; Provisional	94.39
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	94.38
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	94.37
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	94.36

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=100.00  E-value=6.4e-66  Score=445.17  Aligned_cols=197  Identities=51%  Similarity=0.800  Sum_probs=189.8

Q ss_pred             ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976            8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG   87 (216)
Q Consensus         8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG   87 (216)
                      +-.+|||+||+|||+|+|+++++++|+|+|||||||++|.|+|..+  +++|+||||.|++++|++|+++++||+++|||
T Consensus        86 D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~--~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVG  163 (283)
T COG0190          86 DPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQG--EPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVG  163 (283)
T ss_pred             CCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEC
Confidence            4689999999999999999999999999999999999999999866  78899999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976           88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG  167 (216)
Q Consensus        88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~  167 (216)
                      +|..||||++.+|++.+|+||+||+.|+++.+.+++|||||+|+|+|++++.+|+++|++|||+|+|+.+         .
T Consensus       164 rS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVIDVGinrv~---------~  234 (283)
T COG0190         164 RSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVN---------D  234 (283)
T ss_pred             CCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCccccccccccCCCEEEecCCcccc---------C
Confidence            9999999999999999999999999999999999999999999999999999999999999999999976         1


Q ss_pred             CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      ++|+|||||++++++++++|||||||||||++|||+|+++++++..+.
T Consensus       235 ~kl~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~~~  282 (283)
T COG0190         235 GKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRGE  282 (283)
T ss_pred             CceEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHHHHhcc
Confidence            589999999999999999999999999999999999999999987764

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=100.00  E-value=1.9e-65  Score=454.02  Aligned_cols=204  Identities=76%  Similarity=1.205  Sum_probs=190.8

Q ss_pred             ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976            8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG   87 (216)
Q Consensus         8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG   87 (216)
                      +-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.++..++|+||||.|++++|++|+++++||+|+|||
T Consensus       142 D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~i~l~GK~vvVIG  221 (345)
T PLN02897        142 DTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIAGKNAVVIG  221 (345)
T ss_pred             CCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEEC
Confidence            35799999999999999999999999999999999999999998764447899999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976           88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG  167 (216)
Q Consensus        88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~  167 (216)
                      +|..||+|++++|.++||+||+||+.|+++.+++++|||||+|+|+|++++++|+|+|++|||+|+|+.+   ++++++|
T Consensus       222 RS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDVGin~~~---~~~~~~g  298 (345)
T PLN02897        222 RSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVE---DSSCEFG  298 (345)
T ss_pred             CCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEccccccc---cccccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999864   2222233


Q ss_pred             CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      .+++|||||+++.++++++|||||||||||++|||+|+++++++|+.
T Consensus       299 ~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~~~~~~  345 (345)
T PLN02897        299 YRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRIFL  345 (345)
T ss_pred             CeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHHHHhcC
Confidence            48999999999999999999999999999999999999999999863

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=100.00  E-value=3.4e-65  Score=454.24  Aligned_cols=204  Identities=71%  Similarity=1.123  Sum_probs=191.0

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.++..++|+||||.|++++|++|+++++||+|+|||+
T Consensus       160 ~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~y~i~l~GK~vvVIGR  239 (364)
T PLN02616        160 PSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGKRAVVIGR  239 (364)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            56899999999999999999999999999999999999999987644578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.+++|+||+||++|+++.+++++|||||+|+|+|++++++|+|+|++|||+|+|+.+   ++++++|.
T Consensus       240 S~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDVGIn~~~---~~~~~~g~  316 (364)
T PLN02616        240 SNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVE---DASSPRGY  316 (364)
T ss_pred             CccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEeccccccc---cccccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999864   22222234


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      +++|||||++++++++++|||||||||||++|||+|++++++++.+.
T Consensus       317 klvGDVdfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa~~~~~~  363 (364)
T PLN02616        317 RLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHNF  363 (364)
T ss_pred             eEEecCcHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHhhcC
Confidence            89999999999999999999999999999999999999999998764

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1e-64  Score=441.93  Aligned_cols=195  Identities=44%  Similarity=0.715  Sum_probs=186.1

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -++|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+++.|. .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        89 ~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~av~~lL~~y~i~l~GK~vvViGr  167 (288)
T PRK14171         89 NEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGI-SQGFIPCTALGCLAVIKKYEPNLTGKNVVIIGR  167 (288)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            4689999999999999999999999999999999999999999763 478999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.+++|+||+||++|++|++.+++|||||+|+|+|++++++|+++|++|||+|+|+.+         ++
T Consensus       168 S~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDvGin~~~---------~g  238 (288)
T PRK14171        168 SNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRIS---------GN  238 (288)
T ss_pred             CCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCCCccCHHHcCCCCEEEEeeccccC---------CC
Confidence            999999999999999999999999999999999999999999999999999999999999999999864         14


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      +++|||||++++++++++|||||||||||++|||+|+++++++.+
T Consensus       239 kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~  283 (288)
T PRK14171        239 KIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFKDSL  283 (288)
T ss_pred             CeECCccHHHHHhhceEeCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999998643

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.3e-64  Score=440.48  Aligned_cols=196  Identities=48%  Similarity=0.828  Sum_probs=187.9

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+  .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        88 ~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGr  165 (284)
T PRK14170         88 KTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIG--KDSFVPCTPAGIIELIKSTGTQIEGKRAVVIGR  165 (284)
T ss_pred             CCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            578999999999999999999999999999999999999999977  567999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.+++|+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++.+         ++
T Consensus       166 S~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVIDvGin~~~---------~g  236 (284)
T PRK14170        166 SNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDE---------NN  236 (284)
T ss_pred             CCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccC---------CC
Confidence            999999999999999999999999999999999999999999999999999999999999999999854         14


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      +++|||||+++.++++++|||||||||||++|||+|+++++++++..
T Consensus       237 kl~GDvdfe~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~  283 (284)
T PRK14170        237 KLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIWKM  283 (284)
T ss_pred             CeecccchHHHHhhccEecCCCCChHHHHHHHHHHHHHHHHHHHhhc
Confidence            89999999999999999999999999999999999999999988743

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=100.00  E-value=2.8e-64  Score=441.16  Aligned_cols=204  Identities=63%  Similarity=1.034  Sum_probs=190.3

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.++..++|+||||.|++++|++|+++++||+|+|||+
T Consensus        96 ~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGR  175 (299)
T PLN02516         96 PDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAVVVGR  175 (299)
T ss_pred             CCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            57899999999999999999999999999999999999999987643578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||||++++|.++||+||+||++|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++.+   +++..++.
T Consensus       176 S~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDvGin~~~---~~~~~~g~  252 (299)
T PLN02516        176 SNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVS---DPSKKSGY  252 (299)
T ss_pred             CccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEeeccccC---cccccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999864   22211233


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      +++|||||+++.++++++|||||||||||++|||+|+++++++|+.+
T Consensus       253 kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~~~  299 (299)
T PLN02516        253 RLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVFAQ  299 (299)
T ss_pred             ceEcCcChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHHHHHhhC
Confidence            89999999999999999999999999999999999999999999853

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.3e-64  Score=439.58  Aligned_cols=199  Identities=44%  Similarity=0.726  Sum_probs=186.8

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|  .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        88 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~GK~vvViGr  165 (293)
T PRK14185         88 DDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSIG--LPCFVSATPNGILELLKRYHIETSGKKCVVLGR  165 (293)
T ss_pred             CCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            578999999999999999999999999999999999999999977  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhC----CCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC  164 (216)
Q Consensus        89 gg~vg~~~a~~L~~~----ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~  164 (216)
                      |..||+|++++|.++    +|+||+||++|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+|+.+   +++.
T Consensus       166 S~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~---~~~~  242 (293)
T PRK14185        166 SNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVP---DATR  242 (293)
T ss_pred             CccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecCcccc---cccc
Confidence            999999999999998    799999999999999999999999999999999999999999999999999864   2222


Q ss_pred             CCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976          165 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA  212 (216)
Q Consensus       165 ~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~  212 (216)
                      ++|.+++|||||++++++++++|||||||||||++|||+|+++++++.
T Consensus       243 ~~g~klvGDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~  290 (293)
T PRK14185        243 KSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKA  290 (293)
T ss_pred             cCCCeeEcCCCHHHHHhhccEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            223389999999999999999999999999999999999999998764

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.4e-64  Score=437.84  Aligned_cols=194  Identities=43%  Similarity=0.677  Sum_probs=186.0

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+  .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        87 ~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr  164 (282)
T PRK14169         87 PDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGKRVVIVGR  164 (282)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            468999999999999999999999999999999999999999976  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.++||+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++..         ++
T Consensus       165 S~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDvGin~~~---------~g  235 (282)
T PRK14169        165 SNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGA---------DG  235 (282)
T ss_pred             CccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCcEEEEeeccccC---------CC
Confidence            999999999999999999999999999999999999999999999999999999999999999999853         14


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      +++|||||+++.++++++|||||||||||++|||+|+++++++..
T Consensus       236 kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  280 (282)
T PRK14169        236 KLLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKRRA  280 (282)
T ss_pred             CeeecCcHHHHHhhccEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999998754

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.7e-64  Score=438.24  Aligned_cols=196  Identities=46%  Similarity=0.756  Sum_probs=188.3

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|  ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus        89 ~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGr  166 (284)
T PRK14190         89 PRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDISGKHVVVVGR  166 (284)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECC
Confidence            479999999999999999999999999999999999999999977  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.++||+||+||+.|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+         .+
T Consensus       167 S~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDvGi~~~~---------~g  237 (284)
T PRK14190        167 SNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLE---------NG  237 (284)
T ss_pred             CCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeccccC---------CC
Confidence            999999999999999999999999999999999999999999999999999999999999999999864         14


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      +++|||||++++++++++|||||||||||++|||+|+++++++|.+.
T Consensus       238 kl~GDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~  284 (284)
T PRK14190        238 KLCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAGGR  284 (284)
T ss_pred             CeeccCcHHHHhhhceEecCCCCCChHHHHHHHHHHHHHHHHHhhcC
Confidence            89999999999999999999999999999999999999999998763

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.8e-64  Score=439.65  Aligned_cols=203  Identities=49%  Similarity=0.796  Sum_probs=189.1

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|...++|+||||.|++++|++|+++++||+|+|||+
T Consensus        90 ~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr  169 (297)
T PRK14168         90 DSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAEVVVVGR  169 (297)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            46899999999999999999999999999999999999999998754478999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhC----CCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC  164 (216)
Q Consensus        89 gg~vg~~~a~~L~~~----ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~  164 (216)
                      |..||+|++++|.++    +|+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+|+..   +.++
T Consensus       170 S~iVGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gavVIDvGin~~~---~~~~  246 (297)
T PRK14168        170 SNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVG---TNES  246 (297)
T ss_pred             CCcccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEecCCCccC---cccc
Confidence            999999999999998    799999999999999999999999999999999999999999999999999853   1111


Q ss_pred             CCC-CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          165 EYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       165 ~~~-~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                       ++ .+++|||||+++.++++++|||||||||||++|||+|+++++++|++.
T Consensus       247 -~g~~~~~GDVdfe~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~  297 (297)
T PRK14168        247 -TGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLSL  297 (297)
T ss_pred             -CCCcceeccccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence             12 249999999999999999999999999999999999999999999973

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.8e-64  Score=437.51  Aligned_cols=190  Identities=39%  Similarity=0.669  Sum_probs=183.4

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.|  .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        89 ~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGr  166 (278)
T PRK14172         89 NNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEGKEVVVIGR  166 (278)
T ss_pred             CCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            468999999999999999999999999999999999999999987  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.++||+||+||++|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+          +
T Consensus       167 S~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~----------g  236 (278)
T PRK14172        167 SNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVN----------G  236 (278)
T ss_pred             CccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEeeccccC----------C
Confidence            999999999999999999999999999999999999999999999999999999999999999999854          4


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHH
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK  210 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~  210 (216)
                      +++|||||++++++++++|||||||||||++|||+|++++++
T Consensus       237 kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~  278 (278)
T PRK14172        237 KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKNVCEALK  278 (278)
T ss_pred             ceeeeccHHHHHhhccEecCCCCCccHHHHHHHHHHHHHhcC
Confidence            899999999999999999999999999999999999999864

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=5.7e-64  Score=436.40  Aligned_cols=195  Identities=45%  Similarity=0.705  Sum_probs=185.9

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|. .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        87 ~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGr  165 (282)
T PRK14166         87 DSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGL-ESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGA  165 (282)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            4789999999999999999999999999999999999999998763 468999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.+++|+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++..        + +
T Consensus       166 S~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDvGin~~~--------~-g  236 (282)
T PRK14166        166 SNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLE--------S-G  236 (282)
T ss_pred             CCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEecccccC--------C-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999853        1 4


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      +++|||||++++++++++|||||||||||++|||+|+++++++..
T Consensus       237 kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~  281 (282)
T PRK14166        237 KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRL  281 (282)
T ss_pred             CeeCCCCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999999999999999999998753

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=5.7e-64  Score=436.09  Aligned_cols=194  Identities=47%  Similarity=0.737  Sum_probs=185.9

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCc-cCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPL-FIPCTPKGCIELLIRSGVEIMGKNAVVIG   87 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~-~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG   87 (216)
                      -.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+|+.|  ..+ |+||||.|++++|++|+++++||+|+|||
T Consensus        87 ~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~~PcTp~avi~ll~~~~i~l~Gk~vvViG  164 (282)
T PRK14182         87 PAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSIG--IAGVPRPCTPAGVMRMLDEARVDPKGKRALVVG  164 (282)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHhCC--CCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEC
Confidence            478999999999999999999999999999999999999999977  344 89999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976           88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG  167 (216)
Q Consensus        88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~  167 (216)
                      +|..||+|++++|.+++|+||+||++|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++..         +
T Consensus       165 rS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDvGin~~~---------~  235 (282)
T PRK14182        165 RSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLA---------D  235 (282)
T ss_pred             CCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEeeceecC---------C
Confidence            9999999999999999999999999999999999999999999999999999999999999999999853         1


Q ss_pred             CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      ++++|||||++++++++++|||||||||||++|||+|+++++++|.
T Consensus       236 gkl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~~~~~~~  281 (282)
T PRK14182        236 GKLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKRTA  281 (282)
T ss_pred             CCeeCCCCHHHHHhhccEecCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence            4899999999999999999999999999999999999999999885

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=7.4e-64  Score=437.58  Aligned_cols=200  Identities=43%  Similarity=0.715  Sum_probs=187.5

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|...++|+||||.|++++|++|+++++||+|+|||+
T Consensus        89 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr  168 (294)
T PRK14187         89 DSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSDAVVIGR  168 (294)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            47899999999999999999999999999999999999999998754468999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.+++|+||+||+.|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+|+.+   +..   ..
T Consensus       169 S~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDVGin~~~---~~~---~~  242 (294)
T PRK14187        169 SNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIE---EGG---VK  242 (294)
T ss_pred             CccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccC---CCC---cc
Confidence            999999999999999999999999999999999999999999999999999999999999999999853   100   02


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      +++|||||+++.++++++|||||||||||++|||+|+++++++..+
T Consensus       243 kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~  288 (294)
T PRK14187        243 KFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAACNQKG  288 (294)
T ss_pred             ceeCCccHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999999999999999999999999999987543

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.3e-63  Score=434.12  Aligned_cols=195  Identities=40%  Similarity=0.653  Sum_probs=186.5

Q ss_pred             ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976            8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG   87 (216)
Q Consensus         8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG   87 (216)
                      +-.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+++.|. ..+|+||||.|++++|++|+++++||+|+|||
T Consensus        87 D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~~PcTp~aii~lL~~y~i~l~Gk~vvViG  165 (282)
T PRK14180         87 DSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAYAVVVG  165 (282)
T ss_pred             CCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCC-CCCcCCCCHHHHHHHHHHhCCCCCCCEEEEEC
Confidence            35789999999999999999999999999999999999999998763 37899999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976           88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG  167 (216)
Q Consensus        88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~  167 (216)
                      +|..||+|++++|.++||+||+||+.|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+          
T Consensus       166 rS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~----------  235 (282)
T PRK14180        166 ASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVD----------  235 (282)
T ss_pred             CCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEecccccC----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999854          


Q ss_pred             CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      ++++|||||++++++++++|||||||||||++|||+|+++++++++
T Consensus       236 gkl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~  281 (282)
T PRK14180        236 GKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN  281 (282)
T ss_pred             CceeCCcCHHHHHhhccEeccCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            4899999999999999999999999999999999999999998764

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.8e-63  Score=435.98  Aligned_cols=201  Identities=47%  Similarity=0.727  Sum_probs=188.3

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|  ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus        88 ~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr  165 (297)
T PRK14167         88 EDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAG--DARFKPCTPHGIQKLLAAAGVDTEGADVVVVGR  165 (297)
T ss_pred             CCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            578999999999999999999999999999999999999999977  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhC----CCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC  164 (216)
Q Consensus        89 gg~vg~~~a~~L~~~----ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~  164 (216)
                      |..||||++++|.++    +|+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+|+.+   +++ 
T Consensus       166 S~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gaiVIDvGin~~~---~~~-  241 (297)
T PRK14167        166 SDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRVD---ADT-  241 (297)
T ss_pred             CcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEccccccC---ccc-
Confidence            999999999999988    899999999999999999999999999999999999999999999999999853   111 


Q ss_pred             CCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          165 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       165 ~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      .+|.+++|||||++++++++++|||||||||||++|||+|+++++++.++.
T Consensus       242 ~~g~kl~GDVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~  292 (297)
T PRK14167        242 EKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEGV  292 (297)
T ss_pred             ccCCceeecCcHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence            122389999999999999999999999999999999999999999987664

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.2e-63  Score=433.36  Aligned_cols=199  Identities=44%  Similarity=0.699  Sum_probs=185.7

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|. .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        83 ~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~-~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr  161 (287)
T PRK14181         83 PNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGE-TDGFIPCTPAGIIELLKYYEIPLHGRHVAIVGR  161 (287)
T ss_pred             CCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            4789999999999999999999999999999999999999999773 467999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhC----CCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC  164 (216)
Q Consensus        89 gg~vg~~~a~~L~~~----ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~  164 (216)
                      |..||||++++|.++    +|+||+||++|+++++++++|||||+|+|+|++++++|+++|++|||+|+|+..   ++..
T Consensus       162 S~iVGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVIDvGin~~~---~~~~  238 (287)
T PRK14181        162 SNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVP---AANP  238 (287)
T ss_pred             CccchHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccc---cccC
Confidence            999999999999999    899999999999999999999999999999999999999999999999999853   1110


Q ss_pred             CCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976          165 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA  212 (216)
Q Consensus       165 ~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~  212 (216)
                       ++.+++|||||+++.++++++|||||||||||++|||+|+++++++.
T Consensus       239 -~g~kl~GDVd~e~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~  285 (287)
T PRK14181        239 -KGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLRH  285 (287)
T ss_pred             -CCCeeEeccchHHHHhhcccccCCCCchHHHHHHHHHHHHHHHHHhh
Confidence             12389999999999999999999999999999999999999999865

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.1e-63  Score=433.76  Aligned_cols=199  Identities=47%  Similarity=0.711  Sum_probs=187.1

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.|  ...|+||||.|++++|++|+++++||+|+|||+
T Consensus        89 ~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGr  166 (297)
T PRK14186         89 ERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRLVKG--EPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGR  166 (297)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            468999999999999999999999999999999999999999877  467999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.++||+||+||+.|+++++++++|||||+|+|+|++++++|+++|++|||+|+++.+   +++ .+ +
T Consensus       167 S~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~---~~~-~~-g  241 (297)
T PRK14186        167 SILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLP---SSD-GK-T  241 (297)
T ss_pred             CccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccc---ccc-cC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999853   111 12 4


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      +++|||||+++.++++++|||||||||||++|||+|+++++++..+
T Consensus       242 kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~~  287 (297)
T PRK14186        242 RLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRHG  287 (297)
T ss_pred             ceeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhhC
Confidence            8999999999999999999999999999999999999999987654

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.8e-63  Score=430.69  Aligned_cols=194  Identities=46%  Similarity=0.723  Sum_probs=185.7

Q ss_pred             ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976            8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG   87 (216)
Q Consensus         8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG   87 (216)
                      +-++|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+++.|  .++|+||||.|++++|++|+++++||+|+|||
T Consensus        87 D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViG  164 (281)
T PRK14183         87 NPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRLVTG--LDGFVPCTPLGVMELLEEYEIDVKGKDVCVVG  164 (281)
T ss_pred             CCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEEC
Confidence            3578999999999999999999999999999999999999999977  67899999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976           88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG  167 (216)
Q Consensus        88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~  167 (216)
                      +|..||+|++++|.++||+||+||+.|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+         .
T Consensus       165 rS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDvGin~~~---------~  235 (281)
T PRK14183        165 ASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTE---------D  235 (281)
T ss_pred             CCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCcccccCHHHcCCCcEEEEeeccccC---------C
Confidence            9999999999999999999999999999999999999999999999999999999999999999999853         1


Q ss_pred             CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976          168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA  212 (216)
Q Consensus       168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~  212 (216)
                      ++++|||||++++++++++|||||||||||++|||+|+++++++.
T Consensus       236 gkl~GDVd~~~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~  280 (281)
T PRK14183        236 GRLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAKNR  280 (281)
T ss_pred             CCeECCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHhc
Confidence            489999999999999999999999999999999999999999763

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.5e-63  Score=432.23  Aligned_cols=194  Identities=46%  Similarity=0.687  Sum_probs=186.6

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+  .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        88 ~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGr  165 (286)
T PRK14184         88 PDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLALG--LPGFRPCTPAGVMTLLERYGLSPAGKKAVVVGR  165 (286)
T ss_pred             CcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            478999999999999999999999999999999999999999976  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHh----CCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976           89 SNIVGLPTSLLLQR----HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC  164 (216)
Q Consensus        89 gg~vg~~~a~~L~~----~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~  164 (216)
                      |..||+|++++|.+    ++|+|++||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++.+       
T Consensus       166 S~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavVIDVGi~~~~-------  238 (286)
T PRK14184        166 SNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTD-------  238 (286)
T ss_pred             CccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeeeccC-------
Confidence            99999999999999    8999999999999999999999999999999999999999999999999999865       


Q ss_pred             CCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          165 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       165 ~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                         ++++|||||++++++++++|||||||||||++|||+|+++++++..|
T Consensus       239 ---~~l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~~~~~~  285 (286)
T PRK14184        239 ---DGLVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWKERVG  285 (286)
T ss_pred             ---CCccCCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHHhhC
Confidence               36999999999999999999999999999999999999999988766

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.7e-63  Score=430.69  Aligned_cols=190  Identities=42%  Similarity=0.697  Sum_probs=183.1

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|  .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        90 ~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~ll~~y~i~l~Gk~vvViGr  167 (284)
T PRK14177         90 PNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMG--VETYLPCTPYGMVLLLKEYGIDVTGKNAVVVGR  167 (284)
T ss_pred             CCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHHHHHcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            578999999999999999999999999999999999999999977  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.++||+||+||++|+++++.+++|||||+|+|+|++++++|+++|++|||+|+|+             
T Consensus       168 S~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDvGin~-------------  234 (284)
T PRK14177        168 SPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNP-------------  234 (284)
T ss_pred             CCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEecCcc-------------
Confidence            9999999999999999999999999999999999999999999999999999999999999999985             


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      +++|||||++++++++++|||||||||||++|||+|+++++++.+
T Consensus       235 ~~~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  279 (284)
T PRK14177        235 GNVGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFKEHF  279 (284)
T ss_pred             cccCCcCHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHhcc
Confidence            478999999999999999999999999999999999999987643

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=9.8e-63  Score=429.02  Aligned_cols=194  Identities=45%  Similarity=0.735  Sum_probs=184.6

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+  ...|+||||.|++++|++|+++++||+++|||+
T Consensus        89 ~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGr  166 (284)
T PRK14193         89 PACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLN--EPAPLPCTPRGIVHLLRRYDVELAGAHVVVIGR  166 (284)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            468999999999999999999999999999999999999999876  567899999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHh--CCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQR--HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEY  166 (216)
Q Consensus        89 gg~vg~~~a~~L~~--~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~  166 (216)
                      |..||+|++++|.+  ++|+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++..         
T Consensus       167 S~~VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~GavVIDvGin~~~---------  237 (284)
T PRK14193        167 GVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAG---------  237 (284)
T ss_pred             CCcchHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCcCccCHHHcCCCCEEEEccccccC---------
Confidence            99999999999998  7999999999999999999999999999999999999999999999999999853         


Q ss_pred             CCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          167 GYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       167 ~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      +++++|||| ++++++++++|||||||||||++|||+|+++++++..|
T Consensus       238 ~gkl~GDvd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~  284 (284)
T PRK14193        238 DGKLVGDVH-PDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAERRAG  284 (284)
T ss_pred             CCcEEeecC-HhHHhhCCEEeCCCCChhHHHHHHHHHHHHHHHHHhhC
Confidence            148999999 88999999999999999999999999999999987654

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.1e-62  Score=429.08  Aligned_cols=195  Identities=46%  Similarity=0.735  Sum_probs=187.3

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.+  .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        89 ~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~vvViGr  166 (285)
T PRK14189         89 PKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMTG--QPLFRPCTPYGVMKMLESIGIPLRGAHAVVIGR  166 (285)
T ss_pred             CCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhHhhCC--CCCCcCCCHHHHHHHHHHcCCCCCCCEEEEECC
Confidence            568999999999999999999999999999999999999999876  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |+.||+|++++|.++||+||+||++|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++..         ++
T Consensus       167 s~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDVGin~~~---------~g  237 (285)
T PRK14189        167 SNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDD---------AG  237 (285)
T ss_pred             CCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEccccccC---------CC
Confidence            999999999999999999999999999999999999999999999999999999999999999999863         14


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      +++|||||++++++++++|||||||||||++|||+|++++++++..
T Consensus       238 kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N~~~a~~~~~~  283 (285)
T PRK14189        238 KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAERAAA  283 (285)
T ss_pred             CeeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999999999999999999999999999998865

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.1e-62  Score=427.14  Aligned_cols=195  Identities=47%  Similarity=0.766  Sum_probs=187.2

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|  ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus        90 ~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGr  167 (285)
T PRK10792         90 PTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQR--IPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGA  167 (285)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhHHhCC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECC
Confidence            469999999999999999999999999999999999999999876  568999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.++||+||+||++|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++.+         ++
T Consensus       168 s~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDvGin~~~---------~g  238 (285)
T PRK10792        168 SNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLE---------DG  238 (285)
T ss_pred             CcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEccccccc---------CC
Confidence            999999999999999999999999999999999999999999999999999999999999999999864         14


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      +++|||||+.++++++++|||||||||||++|||+|+++++++|+.
T Consensus       239 k~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~N~~~a~~~~~~  284 (285)
T PRK10792        239 KLVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQACEEYHD  284 (285)
T ss_pred             CcCCCcCHHHHHhhccCcCCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999999999999999999999999999999974

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.3e-62  Score=427.29  Aligned_cols=195  Identities=45%  Similarity=0.701  Sum_probs=183.7

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+|+.|  ...|+||||.|++++|++|+++++||+|+|||+
T Consensus        86 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGr  163 (287)
T PRK14173         86 PEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMG--GEALEPCTPAGVVRLLKHYGIPLAGKEVVVVGR  163 (287)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECC
Confidence            468999999999999999999999999999999999999999977  467999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.++||+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+++..   +.   + +
T Consensus       164 S~iVGkPla~lL~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDVGin~~~---~~---~-g  236 (287)
T PRK14173        164 SNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVG---GN---G-G  236 (287)
T ss_pred             CCccHHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccc---CC---C-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999852   00   1 3


Q ss_pred             e--EecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          169 R--LMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       169 ~--l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      +  ++|||| ++++++++++|||||||||||++|||+|++.++++..
T Consensus       237 k~~l~GDVd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  282 (287)
T PRK14173        237 RDILTGDVH-PEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALRRR  282 (287)
T ss_pred             ceeeecccc-HhHHhhCcEEecCCCChhHHHHHHHHHHHHHHHHHHc
Confidence            6  999999 6888999999999999999999999999999998754

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.7e-62  Score=426.47  Aligned_cols=192  Identities=42%  Similarity=0.739  Sum_probs=184.5

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|  ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus        95 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGr  172 (287)
T PRK14176         95 KDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIG--DEGLVPCTPHGVIRALEEYGVDIEGKNAVIVGH  172 (287)
T ss_pred             CCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECC
Confidence            478999999999999999999999999999999999999999977  568999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.++||+||+||+.|+++++.+++|||||+|+|+|++++++|+++|++|||+|+|+..          +
T Consensus       173 s~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvGin~~~----------g  242 (287)
T PRK14176        173 SNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKEE----------D  242 (287)
T ss_pred             CcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEccCCccccCHHHcCCCcEEEEecccccC----------C
Confidence            999999999999999999999999999999999999999999999999999999999999999999754          4


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA  212 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~  212 (216)
                      +++|||||+.++++++++|||||||||||++|||+|+++++++.
T Consensus       243 kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~  286 (287)
T PRK14176        243 KVYGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEKS  286 (287)
T ss_pred             CccCCcCHHHHHhhceEcCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999998753

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.3e-62  Score=425.89  Aligned_cols=194  Identities=45%  Similarity=0.689  Sum_probs=185.9

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+|+.|  ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus        88 ~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGr  165 (285)
T PRK14191         88 QNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQ--LDGFVPATPMGVMRLLKHYHIEIKGKDVVIIGA  165 (285)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcC--CCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            458999999999999999999999999999999999999999977  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||+|++++|.++||+||+||+.|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+         .+
T Consensus       166 s~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvGi~~~~---------~g  236 (285)
T PRK14191        166 SNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLN---------DG  236 (285)
T ss_pred             CchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEeeccccc---------CC
Confidence            999999999999999999999999999999999999999999999999999999999999999999864         14


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      +++|||||++++++++++|||||||||||++|||+|+++++++..
T Consensus       237 klvGDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~  281 (285)
T PRK14191        237 RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAEKRQ  281 (285)
T ss_pred             ceeccccHHHHhhhccEEecCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999998754

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=7.7e-62  Score=423.71  Aligned_cols=195  Identities=45%  Similarity=0.731  Sum_probs=187.3

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+  .++|+||||.|++++|++|+++++||+++|||+
T Consensus        89 ~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~  166 (284)
T PRK14179         89 PTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSG--RPVMIPCTPAGIMEMFREYNVELEGKHAVVIGR  166 (284)
T ss_pred             CCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            478999999999999999999999999999999999999999976  678999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |+.||+|++.+|+++|++|++||++++++++.+++|||||+|+|.|++++++|+++|++|||+|+++..        + +
T Consensus       167 S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDvgin~~~--------~-g  237 (284)
T PRK14179        167 SNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDE--------N-G  237 (284)
T ss_pred             CCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCccccCCHHHccCCcEEEEecceecC--------C-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999864        1 4


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      +++|||||+++.++++++|||||||||||++|||+|+++++++|.-
T Consensus       238 kl~GDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~  283 (284)
T PRK14179        238 KLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALRSLH  283 (284)
T ss_pred             CeecCccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999974

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.5e-61  Score=424.06  Aligned_cols=202  Identities=49%  Similarity=0.729  Sum_probs=187.7

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+|+.|+..++|+||||.|++++|++|+++++||+|+|||+
T Consensus        88 ~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i~l~Gk~vvViGr  167 (295)
T PRK14174         88 PDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGR  167 (295)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            46899999999999999999999999999999999999999998743478999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHh----CCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCC
Q 027976           89 SNIVGLPTSLLLQR----HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSC  164 (216)
Q Consensus        89 gg~vg~~~a~~L~~----~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~  164 (216)
                      |..||+|++++|.+    ++++|++||+++.++++++++|||||+|+|+|++++++|+++|++|||+|+++.+   ++++
T Consensus       168 S~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~~li~~~~vk~GavVIDVgi~~~~---~~~~  244 (295)
T PRK14174        168 SNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIE---DPST  244 (295)
T ss_pred             CCcchHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEecCccCccCHHHcCCCCEEEEeeccccc---cccc
Confidence            99999999999988    7899999999999999999999999999999999999999999999999999854   2222


Q ss_pred             CCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          165 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       165 ~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      ++|.+++|||||++++++++++|||||||||||++|||+|+++++++..
T Consensus       245 ~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~  293 (295)
T PRK14174        245 KSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVN  293 (295)
T ss_pred             cCCCceECCcCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            2234899999999999999999999999999999999999999998754

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.4e-61  Score=422.62  Aligned_cols=196  Identities=45%  Similarity=0.759  Sum_probs=187.1

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|  .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        89 ~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGr  166 (286)
T PRK14175         89 DSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYID--EQTFVPCTPLGIMEILKHADIDLEGKNAVVIGR  166 (286)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECC
Confidence            468999999999999999999999999999999999999999977  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |+.||+|++++|.++||+|++||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++..         .+
T Consensus       167 s~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvGi~~~~---------~g  237 (286)
T PRK14175        167 SHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDE---------NG  237 (286)
T ss_pred             CchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcCCCcCC---------CC
Confidence            999999999999999999999999999999999999999999999999999999999999999999854         14


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      +++|||||++++++++++|||||||||||++|||+|+++++++..+.
T Consensus       238 kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~~~~  284 (286)
T PRK14175        238 KLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRRGI  284 (286)
T ss_pred             CeecCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999886654

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=8.1e-61  Score=416.07  Aligned_cols=193  Identities=45%  Similarity=0.683  Sum_probs=185.4

Q ss_pred             ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976            8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG   87 (216)
Q Consensus         8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG   87 (216)
                      +-.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.+  .++|+||||.|++++|++|+++++||+|+|+|
T Consensus        82 D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~V~ViG  159 (279)
T PRK14178         82 DPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRLVSG--LPGFAPCTPNGIMTLLHEYKISIAGKRAVVVG  159 (279)
T ss_pred             CCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEEC
Confidence            4579999999999999999999999999999999999999999976  57899999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976           88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG  167 (216)
Q Consensus        88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~  167 (216)
                      +|..+|||++++|.++|++|++||++++++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+          
T Consensus       160 rs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDVgi~~~~----------  229 (279)
T PRK14178        160 RSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVN----------  229 (279)
T ss_pred             CCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEeeccccC----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999854          


Q ss_pred             CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976          168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA  212 (216)
Q Consensus       168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~  212 (216)
                      ++++|||||++++++++++|||||||||||++|||+|+++++++.
T Consensus       230 gkl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~  274 (279)
T PRK14178        230 GKLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAKMR  274 (279)
T ss_pred             CCCcCCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999999999999999999999999864

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.8e-60  Score=416.60  Aligned_cols=197  Identities=46%  Similarity=0.799  Sum_probs=186.9

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+++.+++++|+|+|||||+|+.|.|+|+.|  .++|+||||.|++++|++|+++++||+|+|||+
T Consensus        90 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~  167 (301)
T PRK14194         90 PSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQG--RDVLTPCTPSGCLRLLEDTCGDLTGKHAVVIGR  167 (301)
T ss_pred             CCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECC
Confidence            478999999999999999999999999999999999999999877  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC-
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-  167 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~-  167 (216)
                      |+.+|+|++.+|.++|++|++|||+++++++.+++|||||+++|.|++++++|+++|++|||+++|+..   +    ++ 
T Consensus       168 s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDvgin~~~---~----~g~  240 (301)
T PRK14194        168 SNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRID---D----DGR  240 (301)
T ss_pred             CCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhhccCCcEEEEecccccC---C----CCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999853   1    01 


Q ss_pred             CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      .+++|||||+++.++++++|||||||||||++|||+|+++++++|..
T Consensus       241 ~kl~GDvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~  287 (301)
T PRK14194        241 SRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAH  287 (301)
T ss_pred             cceecccchHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            28999999999999999999999999999999999999999999874

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=100.00  E-value=4.6e-60  Score=435.10  Aligned_cols=201  Identities=54%  Similarity=0.862  Sum_probs=195.2

Q ss_pred             CccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCC
Q 027976           10 MPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS   89 (216)
Q Consensus        10 ~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~g   89 (216)
                      -+|||+||+|||.|+|++.+.++|+|+||||||+..|.|+|..++.++.|+||||.||+++|+++++.+.||+++|+|||
T Consensus        92 tvHGiiVQLPLp~hide~~Vt~aI~peKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a~v~v~Gk~aVVlGRS  171 (935)
T KOG4230|consen   92 TVHGIIVQLPLPAHIDEDTVTEAIDPEKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEAGVFVAGKNAVVLGRS  171 (935)
T ss_pred             ccceEEEeccCccccchhhHhhccCcccccccccccchhhhhccCCCceeeccChHHHHHHHHHcCCccccceeEEEecc
Confidence            48999999999999999999999999999999999999999888778999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCCe
Q 027976           90 NIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYR  169 (216)
Q Consensus        90 g~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~  169 (216)
                      .+||.|++.+|...+++||+||++|+++.+.+.+|||||.|+|.|+|++.||+|||++|||+|+|+..   |+++.+|.|
T Consensus       172 ~IVG~Pia~LL~~~NaTVTiCHSKT~~lae~v~~ADIvIvAiG~PefVKgdWiKpGavVIDvGINyvp---D~~Kksg~k  248 (935)
T KOG4230|consen  172 KIVGSPIAALLLWANATVTICHSKTRNLAEKVSRADIVIVAIGQPEFVKGDWIKPGAVVIDVGINYVP---DPSKKSGFK  248 (935)
T ss_pred             cccCChHHHHHHhcCceEEEecCCCccHHHHhccCCEEEEEcCCcceeecccccCCcEEEEccccccC---CCCCcccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999987   777777889


Q ss_pred             EecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          170 LMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       170 l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      ++|||||+++.+.++++|||||||||||+||||+|++.+++|++
T Consensus       249 lvGDVdfe~Akevas~ITPVPGGVGPMTVAMLmqNtveaAKR~r  292 (935)
T KOG4230|consen  249 LVGDVDFESAKEVASFITPVPGGVGPMTVAMLMQNTVEAAKRQR  292 (935)
T ss_pred             EeeecchHhhhhhhhccccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999875

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.6e-58  Score=404.28  Aligned_cols=200  Identities=48%  Similarity=0.769  Sum_probs=185.2

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.|  ..+|+||||.|++++|++|+++++||+|+|||+
T Consensus        89 ~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGr  166 (296)
T PRK14188         89 PAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATG--ETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGR  166 (296)
T ss_pred             CCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEEcC
Confidence            468999999999999999999999999999999999999999877  578999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      ++.+|+|+|.+|+++|++|++||+.|+++++.+++|||||+++|.|+.++.+|+++|++|||+|+++.+   ++...+|.
T Consensus       167 s~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin~~~---~~~~~~g~  243 (296)
T PRK14188        167 SNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIP---APEKGEGK  243 (296)
T ss_pred             CcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCcccC---CccccCCC
Confidence            999999999999999999999998888999999999999999999999999999999999999999843   11101122


Q ss_pred             -eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          169 -RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       169 -~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                       +++|||||++++++++++|||||||||||++|||+|+++++++..
T Consensus       244 ~~l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  289 (296)
T PRK14188        244 TRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRAA  289 (296)
T ss_pred             ceeeCCCCHHHHHhhccEecCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence             799999999999999999999999999999999999999998753

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=8.1e-58  Score=399.97  Aligned_cols=200  Identities=39%  Similarity=0.649  Sum_probs=189.2

Q ss_pred             hhhcccc-CccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCC
Q 027976            3 VQKMKFL-MPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGK   81 (216)
Q Consensus         3 ~~~~~~~-~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk   81 (216)
                      +++++.. ++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.|  .+.+.|||+.|++++|++++++++||
T Consensus        83 i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n~G~l~~~--~~~~~p~T~~gii~~L~~~~i~l~Gk  160 (283)
T PRK14192         83 IEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNIELAGK  160 (283)
T ss_pred             HHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccccCccccC--CCcccCCcHHHHHHHHHHcCCCCCCC
Confidence            5666665 79999999999999999999999999999999999999999876  57889999999999999999999999


Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD  161 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~  161 (216)
                      +|+|+|+|+.+|||++++|.++||+|++|||+++++.+.+++|||||+|||.|++++.+|+++|++|+|++|+|.+    
T Consensus       161 ~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDvg~n~~~----  236 (283)
T PRK14192        161 HAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRD----  236 (283)
T ss_pred             EEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEEEEeecC----
Confidence            9999999998899999999999999999999999999999999999999999999999999999999999999965    


Q ss_pred             CCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          162 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       162 ~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                            .+++|||||++++++++++|||||||||||++|||+|+++++++.+|
T Consensus       237 ------~~~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~n~~~~~~~~~~  283 (283)
T PRK14192        237 ------GGGVGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEKALG  283 (283)
T ss_pred             ------CCCcccccHHHhhccceEeCCCCCcChHHHHHHHHHHHHHHHHHhcC
Confidence                  26899999999999999999999999999999999999999998765

>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]

Probab=100.00  E-value=8.8e-57  Score=382.90  Aligned_cols=206  Identities=56%  Similarity=0.880  Sum_probs=191.1

Q ss_pred             ccccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEE
Q 027976            6 MKFLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVV   85 (216)
Q Consensus         6 ~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~V   85 (216)
                      -.+-.+|||+||+|+|+|++++.+++.++|+|||||+|+.|.|+|......+.|+||||.|++++|+++++.+.||+++|
T Consensus        92 N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~gI~~~GKn~VV  171 (309)
T KOG0089|consen   92 NNDPSVHGILVQLPVPQHIQEQYILNAVSPEKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERTGIETYGKNAVV  171 (309)
T ss_pred             cCCCceeeEEEEeeccccccHHHHHhhcCcccccccccccchhhhccccccccccCCchHHHHHHHHHhCCeecCceEEE
Confidence            34567999999999999999999999999999999999999999987655667999999999999999999999999999


Q ss_pred             EcCCchhHHHHHHHHHhC--------CCEEEEEeCCCC--CHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCC
Q 027976           86 IGRSNIVGLPTSLLLQRH--------HATVSIVHALTK--NPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus        86 iG~gg~vg~~~a~~L~~~--------ga~Vti~~~~t~--~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~  155 (216)
                      +|||.+||+|+|++|++.        .|+|+++||.|+  +++.++++|||+|+|+|.|++++.+|+++|+.|+|+++|+
T Consensus       172 igRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g~p~li~~d~Ik~Ga~vidvgin~  251 (309)
T KOG0089|consen  172 IGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVGIPNLITSDMIKPGAAVIDVGINR  251 (309)
T ss_pred             EcccccccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcCCCcccccceeecCceeEecCCCc
Confidence            999999999999999998        578999999985  4689999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          156 VDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       156 ~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      .+   |+.+..+.+|+||+||+++.++++++||||||+||||+||||+|+++++++.+.
T Consensus       252 v~---dp~~a~~~klvgdvdFe~~~~kag~itpVPggvGpmTiAMLl~Ntl~~ak~v~~  307 (309)
T KOG0089|consen  252 VH---DPSTAVGIKLVGDVDFEEASKKAGAITPVPGGVGPMTIAMLLRNTLRAAKRVFL  307 (309)
T ss_pred             cc---ccccceeeEEeeeccHHHhhhhcCccccCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence            88   555444578999999999999999999999999999999999999999997653

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=100.00  E-value=2.5e-51  Score=331.56  Aligned_cols=160  Identities=54%  Similarity=0.864  Sum_probs=138.4

Q ss_pred             CccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhcc
Q 027976           43 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITS  122 (216)
Q Consensus        43 ~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~  122 (216)
                      ||+|.|+|+.+  +++|+||||.|++++|++|+++++||+|+|||+|..||+|++.+|.++||+|++||++|+++++.++
T Consensus         1 hp~N~g~l~~~--~~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~   78 (160)
T PF02882_consen    1 HPLNLGRLVSG--QPGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR   78 (160)
T ss_dssp             SHHHHHHHHTT--TTSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT
T ss_pred             CcHhHHHHhCC--CCCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee
Confidence            78999999987  7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHH
Q 027976          123 EADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL  202 (216)
Q Consensus       123 ~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl  202 (216)
                      +|||||+|+|+|++++.+|+|+|++|||+|+++.+        .+++++||+||++++++++++|||||||||+|++|||
T Consensus        79 ~ADIVVsa~G~~~~i~~~~ik~gavVIDvG~~~~~--------~~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~  150 (160)
T PF02882_consen   79 RADIVVSAVGKPNLIKADWIKPGAVVIDVGINYVP--------GDGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLM  150 (160)
T ss_dssp             TSSEEEE-SSSTT-B-GGGS-TTEEEEE--CEEET--------TTTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHH
T ss_pred             eccEEeeeeccccccccccccCCcEEEecCCcccc--------ccceeeecccHHHhhccceEEeeCCCCccHHHHHHHH
Confidence            99999999999999999999999999999999872        1269999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027976          203 SNTLDSAKRA  212 (216)
Q Consensus       203 ~n~~~a~~~~  212 (216)
                      +|+++++|++
T Consensus       151 ~N~v~a~~~~  160 (160)
T PF02882_consen  151 KNLVKAAKRQ  160 (160)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999873

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=100.00  E-value=2e-45  Score=303.77  Aligned_cols=158  Identities=31%  Similarity=0.441  Sum_probs=142.7

Q ss_pred             cccccCccCccccccccccCC-------CCccCCCcHHHHHHHHHHhCC---------CCCCCeEEEEcCCchhHHHHHH
Q 027976           35 LEKDVDGFHPLNIGNLAMRGR-------EPLFIPCTPKGCIELLIRSGV---------EIMGKNAVVIGRSNIVGLPTSL   98 (216)
Q Consensus        35 p~KDvdg~~~~n~g~l~~~~~-------~~~~~p~Ta~g~~~~L~~~~~---------~l~gk~v~ViG~gg~vg~~~a~   98 (216)
                      |+|||||+|+.|.|+|+.+..       ..+|+||||.|++++|++|++         +++||+|+|||+|..||+|+++
T Consensus         1 P~KDVDGl~~~n~g~l~~~~~~~~~~~~~~~~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~   80 (197)
T cd01079           1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAA   80 (197)
T ss_pred             CCCCcCCCCHHHHHHHhcCCccccccccCCCccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHH
Confidence            789999999999999987631       158999999999999999976         8999999999999999999999


Q ss_pred             HHHhCCCEEEEE---------------eCCC--CC----HHhhccCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeCCc
Q 027976           99 LLQRHHATVSIV---------------HALT--KN----PEQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus        99 ~L~~~ga~Vti~---------------~~~t--~~----l~~~~~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~~~  156 (216)
                      +|+++||+|++|               |+.+  ++    +.+.+++|||||+|+|+|++ ++++|+++|++|||+|++. 
T Consensus        81 lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~~-  159 (197)
T cd01079          81 LLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIK-  159 (197)
T ss_pred             HHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCCc-
Confidence            999999999999               5555  35    78999999999999999999 9999999999999999863 


Q ss_pred             cCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          157 DVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       157 ~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                                      |+| ++++++++++|||   |||||++|||+|+++++++++
T Consensus       160 ----------------dvd-~~v~~~as~iTPv---VGpvTva~L~~Nlv~~~~~~~  196 (197)
T cd01079         160 ----------------NFE-PSVKEKASIYVPS---IGKVTIAMLLRNLLRLYHNQH  196 (197)
T ss_pred             ----------------Ccc-HhHHhhcCEeCCC---cCHHHHHHHHHHHHHHHHHhc
Confidence                            344 5778999999987   999999999999999998764

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=100.00  E-value=8.6e-42  Score=278.37  Aligned_cols=168  Identities=58%  Similarity=0.918  Sum_probs=156.8

Q ss_pred             cccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           35 LEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        35 p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      |+|||||++..|.++++.+  ...|+|||+.+++++++++..+++||+|+|+|+|+++|++++.+|.++|++|++++|++
T Consensus         1 ~~kdvdg~~~~~~~~~~~~--~~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080           1 PEKDVDGLHPVNLGRLALG--RPGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCccccCCCccchhhHhcC--CCCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            6899999999999999865  57899999999999999999999999999999999889999999999999999999999


Q ss_pred             CCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCccc
Q 027976          115 KNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVG  194 (216)
Q Consensus       115 ~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvG  194 (216)
                      +++.+.+++||+||+|||+|+++++++++++.++||++.+|+.   |.+   +++++||+||+.+++++..+||+|||+|
T Consensus        79 ~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla~prdv---d~~---~~~~~G~~d~~~~~~~~~~~~~~pggvg  152 (168)
T cd01080          79 KNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVP---DKS---GGKLVGDVDFESAKEKASAITPVPGGVG  152 (168)
T ss_pred             hhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEEccCCCcc---ccc---CCCeeCCcCHHHHHhhccCcCCCCCcCh
Confidence            9999999999999999999999999999999999999999976   311   2489999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 027976          195 PMTVAMLLSNTLDSAK  210 (216)
Q Consensus       195 p~T~amLl~n~~~a~~  210 (216)
                      |+|+++||+|++++++
T Consensus       153 p~t~a~l~~n~~~~~~  168 (168)
T cd01080         153 PMTVAMLMKNTVEAAK  168 (168)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999998864

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=100.00  E-value=2.6e-39  Score=256.39  Aligned_cols=136  Identities=37%  Similarity=0.565  Sum_probs=128.0

Q ss_pred             CCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCC
Q 027976           56 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        56 ~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~  135 (216)
                      +++|+||||.|++++|++|+++++||+|+|+|+|..+|+|++.+|.++|++|++||++++++++++++|||||+|+|+++
T Consensus         4 ~~~~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~   83 (140)
T cd05212           4 TPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPE   83 (140)
T ss_pred             CCcccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976          136 LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       136 ~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      +++++|+|+|++|+|++.++..                  |+++.++++++||+||||||||++|||+|+++++
T Consensus        84 ~i~~~~ikpGa~Vidvg~~~~~------------------~~~~~~~a~~~tPvpgGVGp~T~a~L~~n~~~~~  139 (140)
T cd05212          84 KVPTEWIKPGATVINCSPTKLS------------------GDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSV  139 (140)
T ss_pred             ccCHHHcCCCCEEEEcCCCccc------------------chhhHhhceEEcCCCCCchHHHHHHHHHHHHHhc
Confidence            8999999999999999987621                  2567788999999999999999999999999875

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=99.96  E-value=1e-28  Score=216.53  Aligned_cols=182  Identities=16%  Similarity=0.128  Sum_probs=150.1

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCcc-Cccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGF-HPLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~-~~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      .++++|.+++.|++||+|||  ....++++.+++ ++.+.++ |.++ .|++. |+|+|+      .|+++.|++...++
T Consensus        55 ~~~~l~~~~~~G~nVTiP~K--~~v~~~~D~~~~~A~~iGAvNTv~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~  125 (284)
T PRK12549         55 LLDAAERMGFAGLNITHPCK--QAVIPHLDELSDDARALGAVNTVVFRDGRRI-GHNTDW------SGFAESFRRGLPDA  125 (284)
T ss_pred             HHHHHHhcCCCEEEECcCCH--HHHHHHhccCCHHHHHhCCceEEEecCCEEE-EEcCCH------HHHHHHHHhhccCc
Confidence            36778888999999999999  556888888999 8888888 4444 45554 666666      99999999877788


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC----------------------CHHhhccCCCEEEEecCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK----------------------NPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~----------------------~l~~~~~~ADIVIsatg~p~  135 (216)
                      ++|+|+|+|+||+ |++++..|+..|+ +|++++|+..                      ++.+.++++|+||++|+..+
T Consensus       126 ~~k~vlIlGaGGa-araia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm  204 (284)
T PRK12549        126 SLERVVQLGAGGA-GAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM  204 (284)
T ss_pred             cCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence            9999999999997 9999999999997 6999998631                      12335678999999987532


Q ss_pred             ------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976          136 ------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       136 ------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                            +++.++++++.+|+|+.|+|.+          |+|+     +.+ ++.|+  ++.+|.+     ||++|++.+|
T Consensus       205 ~~~~~~~~~~~~l~~~~~v~DivY~P~~----------T~ll-----~~A-~~~G~--~~~~G~~-----ML~~Qa~~~f  261 (284)
T PRK12549        205 AKHPGLPLPAELLRPGLWVADIVYFPLE----------TELL-----RAA-RALGC--RTLDGGG-----MAVFQAVDAF  261 (284)
T ss_pred             CCCCCCCCCHHHcCCCcEEEEeeeCCCC----------CHHH-----HHH-HHCCC--eEecCHH-----HHHHHHHHHH
Confidence                  3666789999999999999977          6888     555 78899  5588988     9999999999


Q ss_pred             HHHhCCC
Q 027976          210 KRAYGFT  216 (216)
Q Consensus       210 ~~~~~~~  216 (216)
                      |+|+|++
T Consensus       262 ~~wtg~~  268 (284)
T PRK12549        262 ELFTGRE  268 (284)
T ss_pred             HHhcCCC
Confidence            9999963

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=99.95  E-value=3.4e-28  Score=213.68  Aligned_cols=182  Identities=20%  Similarity=0.192  Sum_probs=147.7

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      .++.++.+++.|++||+|||  ....++++.+++ +|.+.+++ .++ .|++. |+|+|+      .||++.|++.+.++
T Consensus        52 ~~~~l~~~~~~G~nVTiP~K--~~~~~~~D~l~~~A~~iGAVNTv~~~~g~l~-G~NTD~------~Gf~~~l~~~~~~~  122 (288)
T PRK12749         52 AIEGLKALKMRGTGVSMPNK--QLACEYVDELTPAAKLVGAINTIVNDDGYLR-GYNTDG------TGHIRAIKESGFDI  122 (288)
T ss_pred             HHHHHHhcCCCEEEECcCCH--HHHHHHhccCCHHHHHhCceeEEEccCCEEE-EEecCH------HHHHHHHHhcCCCc
Confidence            35788888999999999999  566888899999 88888884 434 55664 666666      99999999999999


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC------CH-----------------------HhhccCCCEEE
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK------NP-----------------------EQITSEADIVI  128 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~------~l-----------------------~~~~~~ADIVI  128 (216)
                      ++|+++|+|+||+ +|+++..|+..|+ +|+|++|+..      .+                       .+.++++|+||
T Consensus       123 ~~k~vlvlGaGGa-arAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivI  201 (288)
T PRK12749        123 KGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT  201 (288)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEE
Confidence            9999999999998 9999999999996 6999999731      01                       11345689999


Q ss_pred             EecCCCC-------c-ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHH
Q 027976          129 AAAGVAN-------L-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAM  200 (216)
Q Consensus       129 satg~p~-------~-i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~am  200 (216)
                      |+|+..+       + .+.+.++++.+|+|+.|+|.+          |+|+     +.+ +++|+  ++.+|.+     |
T Consensus       202 NaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~~~Gl~-----M  258 (288)
T PRK12749        202 NGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHM----------TKLL-----QQA-QQAGC--KTIDGYG-----M  258 (288)
T ss_pred             ECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCcc----------CHHH-----HHH-HHCCC--eEECCHH-----H
Confidence            9998533       1 233557889999999999987          6888     555 78899  4578988     9


Q ss_pred             HHHHHHHHHHHHhCCC
Q 027976          201 LLSNTLDSAKRAYGFT  216 (216)
Q Consensus       201 Ll~n~~~a~~~~~~~~  216 (216)
                      |++|++.+||+|+|++
T Consensus       259 L~~Qa~~~f~lwtg~~  274 (288)
T PRK12749        259 LLWQGAEQFTLWTGKD  274 (288)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999999999963

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=99.95  E-value=7.6e-28  Score=211.41  Aligned_cols=182  Identities=21%  Similarity=0.247  Sum_probs=148.6

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      .++++|.+++.|++||+|||  ....++++.++| ++.+.+++ .++ .|++. |+++|+      .|+++.|++++.++
T Consensus        54 ~~~~~~~~~~~G~nVT~P~K--~~v~~~ld~~~~~A~~iGavNTi~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~  124 (289)
T PRK12548         54 AIKAIKTFNMRGANVTMPCK--SEAAKYMDELSPAARIIGAVNTIVNDDGKLT-GHITDG------LGFVRNLREHGVDV  124 (289)
T ss_pred             HHHHHHHCCCCEEEECccCH--HHHHHHhhcCCHHHHHhCceeEEEeECCEEE-EEecCH------HHHHHHHHhcCCCc
Confidence            36778888999999999999  666888999999 88888883 444 46664 766666      99999999888889


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCC---C---C------------------------HHhhccCCCEE
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT---K---N------------------------PEQITSEADIV  127 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t---~---~------------------------l~~~~~~ADIV  127 (216)
                      ++|+++|+|+||+ |++++..|+..|++ |++++|+.   +   +                        +.+.++++|+|
T Consensus       125 ~~k~vlI~GAGGa-grAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil  203 (289)
T PRK12548        125 KGKKLTVIGAGGA-ATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL  203 (289)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence            9999999999998 99999999999986 99999863   1   0                        11234567999


Q ss_pred             EEecCCCC-------cc-cCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHH
Q 027976          128 IAAAGVAN-------LV-RGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVA  199 (216)
Q Consensus       128 Isatg~p~-------~i-~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~a  199 (216)
                      |++|+..+       ++ +.++++++.+|+|+.|+|.+          |+|+     +.+ ++.|+  ++.+|++     
T Consensus       204 INaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~~~G~~-----  260 (289)
T PRK12548        204 VNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKK----------TKLL-----EDA-EAAGC--KTVGGLG-----  260 (289)
T ss_pred             EEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCC----------CHHH-----HHH-HHCCC--eeeCcHH-----
Confidence            99997532       23 44678889999999999987          6888     454 78898  5688988     


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 027976          200 MLLSNTLDSAKRAYGFT  216 (216)
Q Consensus       200 mLl~n~~~a~~~~~~~~  216 (216)
                      ||++|++.+||+|+|++
T Consensus       261 ML~~Qa~~~f~lwtg~~  277 (289)
T PRK12548        261 MLLWQGAEAYKLYTGKD  277 (289)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999999963

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=99.95  E-value=4.9e-28  Score=212.20  Aligned_cols=182  Identities=18%  Similarity=0.161  Sum_probs=149.0

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccCcc-c--cccccccCCCCccCCCcHHHHHHHHHHhCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFHPL-N--IGNLAMRGREPLFIPCTPKGCIELLIRSGVE   77 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~~~-n--~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~   77 (216)
                      .++.+|.+++.|++||+|||  .+..++++.++| ++.+.+++.+ +  .|++. |+++|+      .||++.|++...+
T Consensus        54 ~~~~~~~~~~~G~nVT~P~K--~~~~~~lD~l~~~A~~iGAVNTv~~~~~g~l~-G~NTD~------~Gf~~~L~~~~~~  124 (283)
T PRK14027         54 LLDAALYLGFNGLNITHPYK--QAVLPLLDEVSEQATQLGAVNTVVIDATGHTT-GHNTDV------SGFGRGMEEGLPN  124 (283)
T ss_pred             HHHHHHhcCCCEEEECccCH--HHHHHHhhhCCHHHHHhCCceEEEECCCCcEE-EEcCCH------HHHHHHHHhcCcC
Confidence            46778889999999999999  666889999999 9999888433 4  46664 767777      9999999876667


Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC---CH---------------------HhhccCCCEEEEecC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---NP---------------------EQITSEADIVIAAAG  132 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---~l---------------------~~~~~~ADIVIsatg  132 (216)
                      +++|+++|+|+||+ ||+++..|++.|+ +++|++|+..   .+                     .+.+.++|+||++|+
T Consensus       125 ~~~k~vlilGaGGa-arAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        125 AKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             cCCCeEEEECCcHH-HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence            89999999999998 9999999999997 6999998631   11                     123456899999998


Q ss_pred             CCC------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHH
Q 027976          133 VAN------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL  206 (216)
Q Consensus       133 ~p~------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~  206 (216)
                      ..+      +++.+.++++.+|+|+.|+|.+          |+|+     +.+ +++|+  ++-+|.+     ||++|++
T Consensus       204 ~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~~~Gl~-----MLv~Qa~  260 (283)
T PRK14027        204 MGMPAHPGTAFDVSCLTKDHWVGDVVYMPIE----------TELL-----KAA-RALGC--ETLDGTR-----MAIHQAV  260 (283)
T ss_pred             CCCCCCCCCCCCHHHcCCCcEEEEcccCCCC----------CHHH-----HHH-HHCCC--EEEccHH-----HHHHHHH
Confidence            543      2555668888999999999987          7888     454 78899  4578988     9999999


Q ss_pred             HHHHHHhCCC
Q 027976          207 DSAKRAYGFT  216 (216)
Q Consensus       207 ~a~~~~~~~~  216 (216)
                      .+|++|+|.+
T Consensus       261 ~~f~lw~G~~  270 (283)
T PRK14027        261 DAFRLFTGLE  270 (283)
T ss_pred             HHHHHHhCCC
Confidence            9999999963

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=99.95  E-value=9.5e-28  Score=209.94  Aligned_cols=181  Identities=23%  Similarity=0.284  Sum_probs=149.9

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCcc-Ccccc--ccccccCCCCccCCCcHHHHHHHHHHhC--
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGF-HPLNI--GNLAMRGREPLFIPCTPKGCIELLIRSG--   75 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~-~~~n~--g~l~~~~~~~~~~p~Ta~g~~~~L~~~~--   75 (216)
                      .+++++++++.|.||++|+|  ....++++.+++ ++-+.++ |.++.  |++. |+|+|+      .|+.+.|++++  
T Consensus        51 ~v~~~~~~g~~G~NVTiP~K--e~~~~~lD~l~~~A~~iGAVNTl~~~~~g~l~-G~NTD~------~G~~~~L~~~~~~  121 (283)
T COG0169          51 AVSGIRALGFRGLNVTIPFK--EAALPLLDELSPRARLIGAVNTLVREDDGKLR-GYNTDG------IGFLRALKEFGLP  121 (283)
T ss_pred             HHHHHHhcCCCeeEECCccH--HHHHHHHhcCCHHHHHhCCceEEEEccCCEEE-EEcCCH------HHHHHHHHhcCCC
Confidence            36788999999999999999  666889999999 8888888 56665  6775 777777      99999999977  


Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC---CH----------------H--hhccCCCEEEEecCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---NP----------------E--QITSEADIVIAAAGV  133 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---~l----------------~--~~~~~ADIVIsatg~  133 (216)
                      .+.+|++++|+|+||+ +|+++..|++.|+ +|+|+||+.+   +|                .  +...++|+|||+|+.
T Consensus       122 ~~~~~~~vlilGAGGA-arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~  200 (283)
T COG0169         122 VDVTGKRVLILGAGGA-ARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPV  200 (283)
T ss_pred             cccCCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCC
Confidence            5677999999999999 9999999999996 6999999742   11                0  111158999999985


Q ss_pred             CC-------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHH
Q 027976          134 AN-------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL  206 (216)
Q Consensus       134 p~-------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~  206 (216)
                      .+       +++.+.++++.+|+|+.|+|.+          |+|+     +.+ ++.|+.|  .+|.|     ||++|++
T Consensus       201 Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------TplL-----~~A-~~~G~~~--idGl~-----Mlv~Qaa  257 (283)
T COG0169         201 GMAGPEGDSPVPAELLPKGAIVYDVVYNPLE----------TPLL-----REA-RAQGAKT--IDGLG-----MLVHQAA  257 (283)
T ss_pred             CCCCCCCCCCCcHHhcCcCCEEEEeccCCCC----------CHHH-----HHH-HHcCCeE--ECcHH-----HHHHHHH
Confidence            33       2345778999999999999987          7899     555 7788864  77989     9999999


Q ss_pred             HHHHHHhCC
Q 027976          207 DSAKRAYGF  215 (216)
Q Consensus       207 ~a~~~~~~~  215 (216)
                      .+|++|+|+
T Consensus       258 ~aF~lwtg~  266 (283)
T COG0169         258 EAFELWTGV  266 (283)
T ss_pred             HHHHHHhCC
Confidence            999999986

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=99.95  E-value=7.4e-28  Score=209.98  Aligned_cols=181  Identities=15%  Similarity=0.121  Sum_probs=146.4

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCcc-Cccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGF-HPLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~-~~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      +++.+|.+++.|++||+|||  ....++++.++| ++.+.++ |.++ .|++. |+++|+      .|+++.|++.+.+ 
T Consensus        51 ~~~~l~~~~~~G~nVT~P~K--~~~~~~lD~l~~~A~~iGAVNTi~~~~g~l~-G~NTD~------~Gf~~~L~~~~~~-  120 (272)
T PRK12550         51 AIGGVRALGIRGCAVSMPFK--EAVIPLVDELDPSAQAIESVNTIVNTDGHLK-AYNTDY------IAIAKLLASYQVP-  120 (272)
T ss_pred             HHHHHHhcCCCEEEECcCCH--HHHHHHhhcCCHHHHHhCCeeEEEeeCCEEE-EEecCH------HHHHHHHHhcCCC-
Confidence            46788889999999999999  556888999999 8888888 4444 45554 666666      9999999988775 


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCCC---HH--------hhc--cCCCEEEEecCCCC---------
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN---PE--------QIT--SEADIVIAAAGVAN---------  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~~---l~--------~~~--~~ADIVIsatg~p~---------  135 (216)
                      .+++++|+|+||+ +|+++..|++.|+ +|+|++|+.+.   +.        +.+  ..+|+|||||+..+         
T Consensus       121 ~~~~vlilGaGGa-arAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~  199 (272)
T PRK12550        121 PDLVVALRGSGGM-AKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKL  199 (272)
T ss_pred             CCCeEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccC
Confidence            4679999999998 9999999999997 59999997421   11        112  45899999998432         


Q ss_pred             cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          136 LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       136 ~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      +++.++++++.+|+|+.|+|.+          |+|+     +.+ ++.|+  ++.+|++     ||++|++.+||+|+|+
T Consensus       200 pi~~~~l~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~i~Gl~-----MLi~Qa~~~f~lwtg~  256 (272)
T PRK12550        200 AFPEAEIDAASVVFDVVALPAE----------TPLI-----RYA-RARGK--TVITGAE-----VIALQAVEQFVLYTGV  256 (272)
T ss_pred             CCCHHHcCCCCEEEEeecCCcc----------CHHH-----HHH-HHCcC--eEeCCHH-----HHHHHHHHHHHHHhCC
Confidence            3566778999999999999977          6888     555 78898  5588988     9999999999999996


Q ss_pred             C
Q 027976          216 T  216 (216)
Q Consensus       216 ~  216 (216)
                      .
T Consensus       257 ~  257 (272)
T PRK12550        257 R  257 (272)
T ss_pred             C
Confidence            3

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=99.95  E-value=2.2e-27  Score=207.28  Aligned_cols=181  Identities=19%  Similarity=0.217  Sum_probs=148.4

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHH-hCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIR-SGVE   77 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~-~~~~   77 (216)
                      +++.++.+++.|++|++|||  .+..++++.++| ++.+.+++ .++ .|++. |+++|+      .|+++.|++ .+.+
T Consensus        50 ~~~~~~~~~~~G~nVT~P~K--~~~~~~~d~~~~~A~~igavNtv~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~  120 (278)
T PRK00258         50 AVKGFFALGGRGANVTVPFK--EAAFALADELSERARLIGAVNTLVLEDGRLI-GDNTDG------IGFVRALEERLGVD  120 (278)
T ss_pred             HHHHHHhCCCCEEEECcCCH--HHHHHHhhcCCHHHHHhCCceEEEeeCCEEE-EEcccH------HHHHHHHHhccCCC
Confidence            46778888999999999999  666888999999 88888884 335 44554 655555      999999986 5778


Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCCC-------------------HHhhccCCCEEEEecCCCC--
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTKN-------------------PEQITSEADIVIAAAGVAN--  135 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~~-------------------l~~~~~~ADIVIsatg~p~--  135 (216)
                      +++|+++|+|+|++ |++++..|+..| ++|++++|+.+.                   +.+.+.++|+||++|+.++  
T Consensus       121 ~~~k~vlVlGaGg~-a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~  199 (278)
T PRK00258        121 LKGKRILILGAGGA-ARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG  199 (278)
T ss_pred             CCCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence            99999999999997 999999999999 689999987321                   1234577999999998654  


Q ss_pred             -----cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHH
Q 027976          136 -----LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK  210 (216)
Q Consensus       136 -----~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~  210 (216)
                           +++.++++++.+|+|+.|+|.+          |+|+     +.+ +++|+  ++.+|.+     ||++|++.+|+
T Consensus       200 ~~~~~~~~~~~l~~~~~v~DivY~P~~----------T~ll-----~~A-~~~G~--~~~~G~~-----Ml~~Qa~~~f~  256 (278)
T PRK00258        200 ELPLPPLPLSLLRPGTIVYDMIYGPLP----------TPFL-----AWA-KAQGA--RTIDGLG-----MLVHQAAEAFE  256 (278)
T ss_pred             CCCCCCCCHHHcCCCCEEEEeecCCCC----------CHHH-----HHH-HHCcC--eecCCHH-----HHHHHHHHHHH
Confidence                 2455778999999999999976          6888     555 88899  5688988     99999999999


Q ss_pred             HHhCC
Q 027976          211 RAYGF  215 (216)
Q Consensus       211 ~~~~~  215 (216)
                      +|+|+
T Consensus       257 ~wtg~  261 (278)
T PRK00258        257 LWTGV  261 (278)
T ss_pred             HHcCC
Confidence            99996

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=99.94  E-value=5.6e-27  Score=205.33  Aligned_cols=180  Identities=14%  Similarity=0.106  Sum_probs=143.6

Q ss_pred             hhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc--cccccccCCCCccCCCcHHHHHHHHHHhCC--
Q 027976            3 VQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN--IGNLAMRGREPLFIPCTPKGCIELLIRSGV--   76 (216)
Q Consensus         3 ~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n--~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~--   76 (216)
                      +++++. ++.|++||+|||  ....++++.++| +|.+.+++ .++  .|+++ |+|+|+      .|+++.|++.+.  
T Consensus        52 ~~~~~~-~~~G~nVT~P~K--~~~~~~~d~~~~~A~~iGAVNTv~~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~  121 (282)
T TIGR01809        52 LSGFGP-QFGGASVTIPLK--FAILRFADEHTDRASLIGSVNTLLRTQNGIWK-GDNTDW------DGIAGALANIGKFE  121 (282)
T ss_pred             HHhcCC-CCcEEEECCCCH--HHHHHHhhcCCHHHHHhCceeEEEEcCCCcEE-EecCCH------HHHHHHHHhhCCcc
Confidence            445544 899999999999  666888899999 88888884 434  35564 666666      999999998773  


Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC----------------------CHHhhccCCCEEEEecCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK----------------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~----------------------~l~~~~~~ADIVIsatg~  133 (216)
                      ++++|+++|||+||+ ||+++..|++.|+ +|+|++|+.+                      ++.+.+.++|+|||+|+.
T Consensus       122 ~~~~k~vlvlGaGGa-arai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~  200 (282)
T TIGR01809       122 PLAGFRGLVIGAGGT-SRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA  200 (282)
T ss_pred             ccCCceEEEEcCcHH-HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence            689999999999998 9999999999997 6999998621                      112345678999999998


Q ss_pred             CCcccCCc------------ccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHH
Q 027976          134 ANLVRGSW------------LKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML  201 (216)
Q Consensus       134 p~~i~~~~------------i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amL  201 (216)
                      .++++.+.            ++++.+|+|+.|+|.+          |+|+     +.+ +++|+  ++.+|.+     ||
T Consensus       201 g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~~~Gl~-----ML  257 (282)
T TIGR01809       201 DVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWP----------TPLV-----AIV-SAAGW--RVISGLQ-----ML  257 (282)
T ss_pred             CCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCC----------CHHH-----HHH-HHCCC--EEECcHH-----HH
Confidence            77654433            2457899999999987          6888     444 77898  4578988     99


Q ss_pred             HHHHHHHHHHHhCCC
Q 027976          202 LSNTLDSAKRAYGFT  216 (216)
Q Consensus       202 l~n~~~a~~~~~~~~  216 (216)
                      ++|++.+|+.|+|.+
T Consensus       258 v~Qa~~~f~lwtg~~  272 (282)
T TIGR01809       258 LHQGFAQFEQWTGMP  272 (282)
T ss_pred             HHHHHHHHHHHHCCC
Confidence            999999999999963

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=99.93  E-value=5.2e-26  Score=197.65  Aligned_cols=181  Identities=18%  Similarity=0.123  Sum_probs=145.6

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      +++++|.+++.|++||+|||  .+..++++.+++ ++.+.+++ .++ .|++. |+++|+      .|+++.|++.....
T Consensus        45 ~~~~~~~~~~~G~nVT~P~K--~~~~~~~d~~~~~A~~~gavNti~~~~g~l~-g~NTD~------~G~~~~l~~~~~~~  115 (270)
T TIGR00507        45 ALSGFFALGFKGANVTSPFK--EEAFQFLDEIDERAKLAGAVNTLKLEDGKLV-GYNTDG------IGLVSDLERLIPLR  115 (270)
T ss_pred             HHHHHHhcCCCEEEECcCCH--HHHHHHhhhCCHHHHHhCCceEEEeeCCEEE-EEcCCH------HHHHHHHHhcCCCc
Confidence            46778888999999999999  666888999999 88888884 334 45554 655555      99999999877777


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH------------------H-hhccCCCEEEEecCCCC----
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP------------------E-QITSEADIVIAAAGVAN----  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l------------------~-~~~~~ADIVIsatg~p~----  135 (216)
                      ++|+++|+|+|++ |++++..|++.|++|++++|+.+..                  . ....++|+||++|+..+    
T Consensus       116 ~~k~vliiGaGg~-g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       116 PNQRVLIIGAGGA-ARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             cCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            8999999999986 9999999999999999998863211                  1 12257899999999642    


Q ss_pred             ---cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 027976          136 ---LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA  212 (216)
Q Consensus       136 ---~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~  212 (216)
                         .++.++++++.+|+|+.|+|.+          |+|+     +.+ +++|+  ++.+|.+     ||++|++.+|++|
T Consensus       195 ~~~~~~~~~l~~~~~v~D~~y~p~~----------T~ll-----~~A-~~~G~--~~vdG~~-----Ml~~Qa~~~f~~w  251 (270)
T TIGR00507       195 DEPPVPAEKLKEGMVVYDMVYNPGE----------TPFL-----AEA-KSLGT--KTIDGLG-----MLVAQAALAFELW  251 (270)
T ss_pred             CCCCCCHHHcCCCCEEEEeccCCCC----------CHHH-----HHH-HHCCC--eeeCCHH-----HHHHHHHHHHHHH
Confidence               2345668899999999999976          5676     444 78888  5588988     9999999999999


Q ss_pred             hCC
Q 027976          213 YGF  215 (216)
Q Consensus       213 ~~~  215 (216)
                      +|+
T Consensus       252 ~g~  254 (270)
T TIGR00507       252 TGV  254 (270)
T ss_pred             cCC
Confidence            996

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=99.92  E-value=1e-24  Score=205.76  Aligned_cols=182  Identities=21%  Similarity=0.205  Sum_probs=146.7

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc---cccccccCCCCccCCCcHHHHHHHHHHh--
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN---IGNLAMRGREPLFIPCTPKGCIELLIRS--   74 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n---~g~l~~~~~~~~~~p~Ta~g~~~~L~~~--   74 (216)
                      +++.+|..++.|++|++|||  ....++++.++| ++.+.+++ .++   .|++. |+|+|+      .|+++.|++.  
T Consensus       295 ~~~~l~~~~~~G~nVTiP~K--~~v~~~lD~~~~~A~~iGAVNTvv~~~~~g~l~-G~NTD~------~G~~~~l~~~~~  365 (529)
T PLN02520        295 FLQTYSSPDFAGFSCTIPHK--EDALKCCDEVDPIAKSIGAINTIIRRPSDGKLV-GYNTDY------IGAISAIEDGLR  365 (529)
T ss_pred             HHHHHhhCCCCEEEECcCCH--HHHHHHhccCCHHHHHhCCceEEEEeCCCCEEE-EEcccH------HHHHHHHHhhhc
Confidence            46778889999999999999  566888899999 89998884 334   36664 766666      9999999852  


Q ss_pred             --------CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---H--------------Hh-hccCCCEEE
Q 027976           75 --------GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---P--------------EQ-ITSEADIVI  128 (216)
Q Consensus        75 --------~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---l--------------~~-~~~~ADIVI  128 (216)
                              +.++++|+++|+|+||+ |++++..|+++|++|++++|+.+.   +              .+ ....+|+||
T Consensus       366 ~~~~~~~~~~~~~~k~vlIlGaGGa-grAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiI  444 (529)
T PLN02520        366 ASGSSPASGSPLAGKLFVVIGAGGA-GKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILA  444 (529)
T ss_pred             ccccccccccCCCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEE
Confidence                    45789999999999997 999999999999999999886321   1              11 123579999


Q ss_pred             EecCCCC-------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHH
Q 027976          129 AAAGVAN-------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML  201 (216)
Q Consensus       129 satg~p~-------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amL  201 (216)
                      ++|+..+       +++.+++++..+|+|+.|+|.+          |+|+     +.+ +++|+  ++.+|++     ||
T Consensus       445 NtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~~~Gl~-----ML  501 (529)
T PLN02520        445 NTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKI----------TRLL-----REA-EESGA--IIVSGTE-----MF  501 (529)
T ss_pred             ecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCc----------CHHH-----HHH-HHCCC--eEeCcHH-----HH
Confidence            9987532       3566778899999999999987          6888     555 78899  5588988     99


Q ss_pred             HHHHHHHHHHHhCCC
Q 027976          202 LSNTLDSAKRAYGFT  216 (216)
Q Consensus       202 l~n~~~a~~~~~~~~  216 (216)
                      ++|++.+|++|+|.+
T Consensus       502 v~Qa~~~f~lwtg~~  516 (529)
T PLN02520        502 IRQAYEQFERFTGLP  516 (529)
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999999963

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=99.90  E-value=1.5e-23  Score=195.65  Aligned_cols=178  Identities=15%  Similarity=0.128  Sum_probs=144.8

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      +++.++..++.|++|++|||  ....++++.++| ++.+.+++ .++ .|++. |+|+|+      .|+++.|++.+.++
T Consensus       260 ~~~~~~~~~~~G~nVT~P~K--~~v~~~~d~~~~~A~~iGAVNTv~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~  330 (477)
T PRK09310        260 FFSTIRDLPFLGLSVTMPLK--TAVLDFLDKLDPSVKLCGSCNTLVFRNGKIE-GYNTDG------EGLFSLLKQKNIPL  330 (477)
T ss_pred             HHHHHHhCCCCEEEECccCH--HHHHHHhccCCHHHHHhCcceEEEeeCCEEE-EEecCH------HHHHHHHHhcCCCc
Confidence            45778888999999999999  666888899999 89988884 334 56664 766666      99999999999999


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH--------------H--hhccCCCEEEEecCCCCcccCCcc
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------E--QITSEADIVIAAAGVANLVRGSWL  142 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l--------------~--~~~~~ADIVIsatg~p~~i~~~~i  142 (216)
                      ++++++|+|+|++ |++++..|.+.|++|++++|+....              .  ..+.++|+||++|+....+.. .+
T Consensus       331 ~~k~vlIiGaGgi-G~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~~~~-~l  408 (477)
T PRK09310        331 NNQHVAIVGAGGA-AKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVTIPK-AF  408 (477)
T ss_pred             CCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCcchh-HH
Confidence            9999999999986 9999999999999999998863211              1  114678999999987655543 33


Q ss_pred             cCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       143 ~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      .  .+|+|+.|+|.+          |.|+     +.+ ++.|+  ++.+|++     ||++|++.+|++|+|.
T Consensus       409 ~--~~v~D~~Y~P~~----------T~ll-----~~A-~~~G~--~~~~G~~-----Ml~~Qa~~~f~lw~g~  456 (477)
T PRK09310        409 P--PCVVDINTLPKH----------SPYT-----QYA-RSQGS--SIIYGYE-----MFAEQALLQFRLWFPT  456 (477)
T ss_pred             h--hhEEeccCCCCC----------CHHH-----HHH-HHCcC--EEECcHH-----HHHHHHHHHHHHHcCC
Confidence            3  389999999976          5777     444 77898  4578988     9999999999999996

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.65  E-value=8.5e-16  Score=135.61  Aligned_cols=130  Identities=22%  Similarity=0.362  Sum_probs=104.1

Q ss_pred             cHHH-HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------CHHhhccCCC
Q 027976           63 TPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------NPEQITSEAD  125 (216)
Q Consensus        63 Ta~g-~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------~l~~~~~~AD  125 (216)
                      |+++ +.+.+++++.++.|++|+|+|+|.+ |++++..|...|++|++++|+..                ++.+.++++|
T Consensus       134 ~aegav~~a~~~~~~~l~g~kvlViG~G~i-G~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aD  212 (296)
T PRK08306        134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRT-GMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKID  212 (296)
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCC
Confidence            4555 5566778888999999999999985 99999999999999999988742                3557789999


Q ss_pred             EEEEecCCCCcccCCc---ccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhH---cceecccCCcccHHHHH
Q 027976          126 IVIAAAGVANLVRGSW---LKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRL---ASVITPVPGGVGPMTVA  199 (216)
Q Consensus       126 IVIsatg~p~~i~~~~---i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~---~~~~tpvpgGvGp~T~a  199 (216)
                      +||++++.+ .++.++   ++++.++||++++|                |++||+.++++   ..+.++.||+++|+|.+
T Consensus       213 iVI~t~p~~-~i~~~~l~~~~~g~vIIDla~~p----------------ggtd~~~a~~~Gv~~~~~~~lpg~vap~ta~  275 (296)
T PRK08306        213 IIFNTIPAL-VLTKEVLSKMPPEALIIDLASKP----------------GGTDFEYAEKRGIKALLAPGLPGKVAPKTAG  275 (296)
T ss_pred             EEEECCChh-hhhHHHHHcCCCCcEEEEEccCC----------------CCcCeeehhhCCeEEEEECCCCccCCHHHHH
Confidence            999998643 355554   68899999999976                44666555333   44457889999999999


Q ss_pred             HHHHHHHHHHH
Q 027976          200 MLLSNTLDSAK  210 (216)
Q Consensus       200 mLl~n~~~a~~  210 (216)
                      .++.|.+..+-
T Consensus       276 ~~~~~~i~~~l  286 (296)
T PRK08306        276 QILANVLSQLL  286 (296)
T ss_pred             HHHHHHHHHHH
Confidence            99999987763

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.61  E-value=4.3e-15  Score=130.69  Aligned_cols=129  Identities=26%  Similarity=0.380  Sum_probs=101.5

Q ss_pred             CcHHHHH-HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------CHHhhccCC
Q 027976           62 CTPKGCI-ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------NPEQITSEA  124 (216)
Q Consensus        62 ~Ta~g~~-~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------~l~~~~~~A  124 (216)
                      +|+++++ .+++.++++++||+++|+|.|++ |++++..|...|++|++++|+.+                ++.+.++++
T Consensus       132 ~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~i-G~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~a  210 (287)
T TIGR02853       132 PTAEGAIMMAIEHTDFTIHGSNVMVLGFGRT-GMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEI  210 (287)
T ss_pred             hHHHHHHHHHHHhcCCCCCCCEEEEEcChHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccC
Confidence            4666654 55667788999999999999996 99999999999999999988642                345678899


Q ss_pred             CEEEEecCCCCcccCC---cccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceec---c-cCCcccHHH
Q 027976          125 DIVIAAAGVANLVRGS---WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT---P-VPGGVGPMT  197 (216)
Q Consensus       125 DIVIsatg~p~~i~~~---~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~t---p-vpgGvGp~T  197 (216)
                      |+||++++.+ .++.+   .+++++++||++|+|                |.+||+.+ ++.|..+   | .||.++|.|
T Consensus       211 DiVint~P~~-ii~~~~l~~~k~~aliIDlas~P----------------g~tdf~~A-k~~G~~a~~~~glPg~~ap~t  272 (287)
T TIGR02853       211 DIVINTIPAL-VLTADVLSKLPKHAVIIDLASKP----------------GGTDFEYA-KKRGIKALLAPGLPGIVAPKT  272 (287)
T ss_pred             CEEEECCChH-HhCHHHHhcCCCCeEEEEeCcCC----------------CCCCHHHH-HHCCCEEEEeCCCCcccCchh
Confidence            9999999754 23433   468899999999986                55677544 5655332   3 799999999


Q ss_pred             HHHHHHHHHHHH
Q 027976          198 VAMLLSNTLDSA  209 (216)
Q Consensus       198 ~amLl~n~~~a~  209 (216)
                      .+.++.|++...
T Consensus       273 a~~i~~~~~~~~  284 (287)
T TIGR02853       273 AGKILANVLSEL  284 (287)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.56  E-value=5.9e-14  Score=111.15  Aligned_cols=128  Identities=27%  Similarity=0.406  Sum_probs=100.4

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCC-------------------CHHhhcc
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-------------------NPEQITS  122 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~-------------------~l~~~~~  122 (216)
                      +..|+.+.+++.+.++++++++|+|.|++ |++++..|++.| .+|++++++.+                   +..+.++
T Consensus         2 d~~g~~~a~~~~~~~~~~~~i~iiG~G~~-g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (155)
T cd01065           2 DGLGFVRALEEAGIELKGKKVLILGAGGA-ARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA   80 (155)
T ss_pred             CHHHHHHHHHhhCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccc
Confidence            44899999999998899999999999875 999999999986 67999977521                   2234468


Q ss_pred             CCCEEEEecCCCCc------ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHH
Q 027976          123 EADIVIAAAGVANL------VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPM  196 (216)
Q Consensus       123 ~ADIVIsatg~p~~------i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~  196 (216)
                      ++|+||++++.+..      +....++++.+|+|++|.|..          +.+.     +.+ ++.+.  .+.+|..  
T Consensus        81 ~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~----------~~l~-----~~~-~~~g~--~~v~g~~--  140 (155)
T cd01065          81 EADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLE----------TPLL-----KEA-RALGA--KTIDGLE--  140 (155)
T ss_pred             cCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCC----------CHHH-----HHH-HHCCC--ceeCCHH--
Confidence            89999999986542      233446789999999998754          3344     344 66676  4567877  


Q ss_pred             HHHHHHHHHHHHHHHHhC
Q 027976          197 TVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       197 T~amLl~n~~~a~~~~~~  214 (216)
                         ||++|++++++.|+|
T Consensus       141 ---~~~~q~~~~~~~~~~  155 (155)
T cd01065         141 ---MLVYQAAEAFELWTG  155 (155)
T ss_pred             ---HHHHHHHHHHHHhcC
Confidence               999999999999997

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=99.45  E-value=8.4e-14  Score=109.43  Aligned_cols=87  Identities=25%  Similarity=0.271  Sum_probs=70.4

Q ss_pred             HHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCC--------------------CCHHhhccCCCEEE
Q 027976           70 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT--------------------KNPEQITSEADIVI  128 (216)
Q Consensus        70 ~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t--------------------~~l~~~~~~ADIVI  128 (216)
                      +.++...++++++++|+|+||+ |++++..|..+|++ |++++|+.                    .++.+.+.++|+||
T Consensus         2 la~~~~~~l~~~~vlviGaGg~-ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI   80 (135)
T PF01488_consen    2 LAKKKFGDLKGKRVLVIGAGGA-ARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVI   80 (135)
T ss_dssp             HHCTHHSTGTTSEEEEESSSHH-HHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEE
T ss_pred             hhHHhcCCcCCCEEEEECCHHH-HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEE
Confidence            3344445899999999999998 99999999999986 99999972                    23556788999999


Q ss_pred             EecCCCCc-ccCCcccCC----cEEEEeeeCCcc
Q 027976          129 AAAGVANL-VRGSWLKPG----AVVLDVGTCPVD  157 (216)
Q Consensus       129 satg~p~~-i~~~~i~~g----~vViDvg~~~~~  157 (216)
                      +||+.+++ ++.+++++.    .+|+|++++|+.
T Consensus        81 ~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i  114 (135)
T PF01488_consen   81 NATPSGMPIITEEMLKKASKKLRLVIDLAVPRDI  114 (135)
T ss_dssp             E-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred             EecCCCCcccCHHHHHHHHhhhhceeccccCCCC
Confidence            99999886 788898876    599999988764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=99.29  E-value=4.8e-12  Score=115.90  Aligned_cols=117  Identities=18%  Similarity=0.240  Sum_probs=95.1

Q ss_pred             HHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EE
Q 027976           29 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TV  107 (216)
Q Consensus        29 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~V  107 (216)
                      +..+|+-.|.|..-|.++.|...           -+++++++.++...+|++|+++|||+|.+ |..+|..|..+|. .|
T Consensus       138 FqkAi~~gKrvRseT~I~~~~VS-----------i~saAv~lA~~~~~~L~~~~vlvIGAGem-~~lva~~L~~~g~~~i  205 (414)
T COG0373         138 FQKAISVGKRVRSETGIGKGAVS-----------ISSAAVELAKRIFGSLKDKKVLVIGAGEM-GELVAKHLAEKGVKKI  205 (414)
T ss_pred             HHHHHHHHHHhhcccCCCCCccc-----------hHHHHHHHHHHHhcccccCeEEEEcccHH-HHHHHHHHHhCCCCEE
Confidence            34566667777666666655443           23889999999888899999999999997 9999999999995 69


Q ss_pred             EEEeCCC-----------------CCHHhhccCCCEEEEecCCCCc-ccCCcccC------CcEEEEeeeCCcc
Q 027976          108 SIVHALT-----------------KNPEQITSEADIVIAAAGVANL-VRGSWLKP------GAVVLDVGTCPVD  157 (216)
Q Consensus       108 ti~~~~t-----------------~~l~~~~~~ADIVIsatg~p~~-i~~~~i~~------g~vViDvg~~~~~  157 (216)
                      +|+||+-                 +++.+++.++|+||++||.|++ ++.+++..      ..++||++.||+.
T Consensus       206 ~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdi  279 (414)
T COG0373         206 TIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDV  279 (414)
T ss_pred             EEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCC
Confidence            9999982                 3567899999999999999998 67777643      2589999999975

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=99.25  E-value=2.2e-11  Score=103.75  Aligned_cols=92  Identities=22%  Similarity=0.316  Sum_probs=76.8

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCC----CC--------------------
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL----TK--------------------  115 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~----t~--------------------  115 (216)
                      +-.|++..++..+.++++++++|+|+|++ |++++.+|...|+   ++++++|+    ..                    
T Consensus         8 ~lAG~~~al~~~g~~l~~~rvlvlGAGgA-g~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~   86 (226)
T cd05311           8 TLAGLLNALKLVGKKIEEVKIVINGAGAA-GIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK   86 (226)
T ss_pred             HHHHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc
Confidence            45789999999999999999999999998 9999999999997   49999987    11                    


Q ss_pred             ---CHHhhccCCCEEEEecCCCCcccCCccc---CCcEEEEeeeCCcc
Q 027976          116 ---NPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTCPVD  157 (216)
Q Consensus       116 ---~l~~~~~~ADIVIsatg~p~~i~~~~i~---~g~vViDvg~~~~~  157 (216)
                         ++.+.++++|+||++|+ +..+++++++   ++.+|+|+. ||.+
T Consensus        87 ~~~~l~~~l~~~dvlIgaT~-~G~~~~~~l~~m~~~~ivf~ls-nP~~  132 (226)
T cd05311          87 TGGTLKEALKGADVFIGVSR-PGVVKKEMIKKMAKDPIVFALA-NPVP  132 (226)
T ss_pred             ccCCHHHHHhcCCEEEeCCC-CCCCCHHHHHhhCCCCEEEEeC-CCCC
Confidence               23456677999999999 6667777776   788999987 8765

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=99.23  E-value=4.4e-11  Score=86.83  Aligned_cols=78  Identities=29%  Similarity=0.460  Sum_probs=67.2

Q ss_pred             CcHHHHHHHHHHhC----CCCCCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCCCCHHhhccCCCEEEEecCCCCc
Q 027976           62 CTPKGCIELLIRSG----VEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTKNPEQITSEADIVIAAAGVANL  136 (216)
Q Consensus        62 ~Ta~g~~~~L~~~~----~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~  136 (216)
                      ||+.++++.|++..    .++++|+++|+|+|.. |++++.+|.+. +.+|++++|            |++|++++.+++
T Consensus         1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~-g~~~a~~l~~~~~~~v~v~~r------------di~i~~~~~~~~   67 (86)
T cd05191           1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEV-GKGIAKLLADEGGKKVVLCDR------------DILVTATPAGVP   67 (86)
T ss_pred             ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC------------CEEEEcCCCCCC
Confidence            68888888888654    4589999999999775 99999999998 467999877            999999999998


Q ss_pred             ccC---CcccCCcEEEEee
Q 027976          137 VRG---SWLKPGAVVLDVG  152 (216)
Q Consensus       137 i~~---~~i~~g~vViDvg  152 (216)
                      +.+   ++++++.+|+|+.
T Consensus        68 ~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          68 VLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             chHHHHHhcCCCCEEEecC
Confidence            766   6788999999974

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.21  E-value=6.5e-11  Score=95.86  Aligned_cols=92  Identities=24%  Similarity=0.404  Sum_probs=66.9

Q ss_pred             HHHHHHH-HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEe
Q 027976           65 KGCIELL-IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        65 ~g~~~~L-~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsa  130 (216)
                      +..++.+ +..+..+.||+++|+|.|.. ||.+|+.|...|+.|+|+...+             ..+.+.++++|++|++
T Consensus         7 ~S~~d~i~r~t~~~l~Gk~vvV~GYG~v-G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta   85 (162)
T PF00670_consen    7 QSLVDGIMRATNLMLAGKRVVVIGYGKV-GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA   85 (162)
T ss_dssp             HHHHHHHHHHH-S--TTSEEEEE--SHH-HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred             hhHHHHHHhcCceeeCCCEEEEeCCCcc-cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence            4444444 45688999999999999985 9999999999999999997753             3577899999999999


Q ss_pred             cCCCCcccCCc---ccCCcEEEEeeeCCcc
Q 027976          131 AGVANLVRGSW---LKPGAVVLDVGTCPVD  157 (216)
Q Consensus       131 tg~p~~i~~~~---i~~g~vViDvg~~~~~  157 (216)
                      ||..+.++.++   +|+|+++.++++...|
T Consensus        86 TG~~~vi~~e~~~~mkdgail~n~Gh~d~E  115 (162)
T PF00670_consen   86 TGNKDVITGEHFRQMKDGAILANAGHFDVE  115 (162)
T ss_dssp             SSSSSSB-HHHHHHS-TTEEEEESSSSTTS
T ss_pred             CCCccccCHHHHHHhcCCeEEeccCcCcee
Confidence            99988888776   4889999999987655

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=99.19  E-value=3.4e-11  Score=110.98  Aligned_cols=143  Identities=17%  Similarity=0.129  Sum_probs=98.8

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC------------------CCHHhhccC
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT------------------KNPEQITSE  123 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t------------------~~l~~~~~~  123 (216)
                      -+++++++.++...++.|++++|||+|++ |+.++..|..+|+ ++++++|+.                  .++.+.+.+
T Consensus       164 v~~~Av~la~~~~~~l~~kkvlviGaG~~-a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~  242 (414)
T PRK13940        164 VAFSAITLAKRQLDNISSKNVLIIGAGQT-GELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKK  242 (414)
T ss_pred             HHHHHHHHHHHHhcCccCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhcc
Confidence            45778899888777899999999999998 9999999999996 699999872                  124567889


Q ss_pred             CCEEEEecCCCCc-ccCCcccC-CcEEEEeeeCCccCCCCCCCC--CCCeEecccCh-HHHhhHcceecccCCcccHHHH
Q 027976          124 ADIVIAAAGVANL-VRGSWLKP-GAVVLDVGTCPVDVSVDPSCE--YGYRLMGDVCY-EEAMRLASVITPVPGGVGPMTV  198 (216)
Q Consensus       124 ADIVIsatg~p~~-i~~~~i~~-g~vViDvg~~~~~~~~~~~~~--~~~~l~GDvd~-~~~~~~~~~~tpvpgGvGp~T~  198 (216)
                      ||+||+||++|++ |+.++++. ..++||++.+++.   |+.-.  .|-.++ |+|. +...++....-    ---...+
T Consensus       243 aDiVI~aT~a~~~vi~~~~~~~~~~~~iDLavPRdi---dp~v~~l~~v~l~-~iDdl~~i~~~n~~~R----~~~~~~a  314 (414)
T PRK13940        243 ADIIIAAVNVLEYIVTCKYVGDKPRVFIDISIPQAL---DPKLGELEQNVYY-CVDDINAVIEDNKDKR----KYESSKA  314 (414)
T ss_pred             CCEEEECcCCCCeeECHHHhCCCCeEEEEeCCCCCC---CccccCcCCeEEE-eHHHHHHHHHHHHHHH----HHHHHHH
Confidence            9999999999998 68777653 4689999999986   33210  122333 5552 11111100000    0011124


Q ss_pred             HHHHHHHHHHHHHHhC
Q 027976          199 AMLLSNTLDSAKRAYG  214 (216)
Q Consensus       199 amLl~n~~~a~~~~~~  214 (216)
                      ..++..-+..|..|+.
T Consensus       315 ~~iI~e~~~~f~~w~~  330 (414)
T PRK13940        315 QKIIVKSLEEYLEKEK  330 (414)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5677778888888863

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=99.17  E-value=3.3e-10  Score=93.57  Aligned_cols=95  Identities=29%  Similarity=0.312  Sum_probs=71.7

Q ss_pred             cHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------
Q 027976           63 TPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------  115 (216)
Q Consensus        63 Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------  115 (216)
                      |+.+.++++    ++++.++++++++|+|+.|.+|+.++..|++.|++|++++|+.+                       
T Consensus         7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~   86 (194)
T cd01078           7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETS   86 (194)
T ss_pred             HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCC
Confidence            555555544    45567999999999997444699999999999999999877521                       


Q ss_pred             ---CHHhhccCCCEEEEecCCCCc--ccCC-cccCCcEEEEeeeCCcc
Q 027976          116 ---NPEQITSEADIVIAAAGVANL--VRGS-WLKPGAVVLDVGTCPVD  157 (216)
Q Consensus       116 ---~l~~~~~~ADIVIsatg~p~~--i~~~-~i~~g~vViDvg~~~~~  157 (216)
                         ++.+.++++|+||++|+.+.+  ...+ ..+++.+++|+.|+|+.
T Consensus        87 ~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078          87 DDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             CHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCC
Confidence               123567889999999998773  3333 34568899999999975

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.06  E-value=2.5e-10  Score=106.37  Aligned_cols=84  Identities=26%  Similarity=0.352  Sum_probs=72.8

Q ss_pred             HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCCcc
Q 027976           71 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLV  137 (216)
Q Consensus        71 L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~~i  137 (216)
                      ++..+..+.||+++|+|.|. +|+++|..|...|++|+++++..             .++.+.+++||+||+++|.++.+
T Consensus       245 ~R~~~~~LaGKtVgVIG~G~-IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI  323 (476)
T PTZ00075        245 FRATDVMIAGKTVVVCGYGD-VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDII  323 (476)
T ss_pred             HHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCccccc
Confidence            44567889999999999998 59999999999999999997652             24677899999999999998888


Q ss_pred             cCCcc---cCCcEEEEeeeCC
Q 027976          138 RGSWL---KPGAVVLDVGTCP  155 (216)
Q Consensus       138 ~~~~i---~~g~vViDvg~~~  155 (216)
                      +.++|   |++++++++|...
T Consensus       324 ~~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        324 TLEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             CHHHHhccCCCcEEEEcCCCc
Confidence            87776   8999999999875

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.99  E-value=5e-09  Score=94.29  Aligned_cols=87  Identities=21%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhC-CC-EEEEEeCCCC---------------CHHhhccCCCEEEEecCC
Q 027976           71 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALTK---------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        71 L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t~---------------~l~~~~~~ADIVIsatg~  133 (216)
                      .+..+.++++|+|+|+|++|.+|+.+++.|+.+ |+ ++++++|+..               ++.+.+.++|+||++++.
T Consensus       146 ~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~  225 (340)
T PRK14982        146 APRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM  225 (340)
T ss_pred             HHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC
Confidence            345567899999999999888899999999864 54 7999988631               233678899999999998


Q ss_pred             CCc--ccCCcccCCcEEEEeeeCCcc
Q 027976          134 ANL--VRGSWLKPGAVVLDVGTCPVD  157 (216)
Q Consensus       134 p~~--i~~~~i~~g~vViDvg~~~~~  157 (216)
                      ++.  +++++++++.++||++++++-
T Consensus       226 ~~~~~I~~~~l~~~~~viDiAvPRDV  251 (340)
T PRK14982        226 PKGVEIDPETLKKPCLMIDGGYPKNL  251 (340)
T ss_pred             CcCCcCCHHHhCCCeEEEEecCCCCC
Confidence            765  788999999999999999975

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.95  E-value=1.6e-09  Score=97.33  Aligned_cols=92  Identities=15%  Similarity=0.096  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC-----CHH----hhccCCCEEEEe---
Q 027976           64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----NPE----QITSEADIVIAA---  130 (216)
Q Consensus        64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-----~l~----~~~~~ADIVIsa---  130 (216)
                      +++++++++.. -++++|+++|||+|.+ |+.++..|.++|+ +|+++||+..     ++.    +...++||||++   
T Consensus       159 ~s~av~~~~~~-~~l~~k~vLvIGaGem-~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~  236 (338)
T PRK00676        159 ESVVQQELRRR-QKSKKASLLFIGYSEI-NRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSE  236 (338)
T ss_pred             HHHHHHHHHHh-CCccCCEEEEEcccHH-HHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCc
Confidence            35567777665 5799999999999997 9999999999995 6999999832     222    446789999997   


Q ss_pred             cCCCCc-ccCCcccC--CcEEEEeeeCCcc
Q 027976          131 AGVANL-VRGSWLKP--GAVVLDVGTCPVD  157 (216)
Q Consensus       131 tg~p~~-i~~~~i~~--g~vViDvg~~~~~  157 (216)
                      |+.|++ ++.+++++  ..++||++.+++.
T Consensus       237 Tas~~p~i~~~~~~~~~~r~~iDLAvPRdI  266 (338)
T PRK00676        237 SAYAFPHLSWESLADIPDRIVFDFNVPRTF  266 (338)
T ss_pred             CCCCCceeeHHHHhhccCcEEEEecCCCCC
Confidence            678887 66666643  2589999999986

>PLN00203 glutamyl-tRNA reductase

Probab=98.86  E-value=5.2e-09  Score=98.98  Aligned_cols=143  Identities=12%  Similarity=0.081  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHHhCC--CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------CCHHh
Q 027976           63 TPKGCIELLIRSGV--EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------KNPEQ  119 (216)
Q Consensus        63 Ta~g~~~~L~~~~~--~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------~~l~~  119 (216)
                      -+++++++.++..-  ++.+++|+|||+|++ |+.++..|...|+ +|++++|+.                    .++.+
T Consensus       247 v~s~Av~la~~~~~~~~l~~kkVlVIGAG~m-G~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~  325 (519)
T PLN00203        247 VSSAAVELALMKLPESSHASARVLVIGAGKM-GKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA  325 (519)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCEEEEEeCHHH-HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHH
Confidence            44678888876643  489999999999886 9999999999997 699998862                    13446


Q ss_pred             hccCCCEEEEecCCCCc-ccCCcccC----------CcEEEEeeeCCccCCCCCCC--CCCCeEecccCh-HHHhhHcce
Q 027976          120 ITSEADIVIAAAGVANL-VRGSWLKP----------GAVVLDVGTCPVDVSVDPSC--EYGYRLMGDVCY-EEAMRLASV  185 (216)
Q Consensus       120 ~~~~ADIVIsatg~p~~-i~~~~i~~----------g~vViDvg~~~~~~~~~~~~--~~~~~l~GDvd~-~~~~~~~~~  185 (216)
                      .+.+||+||++|+++++ +..+++++          ..++||++.+++.   |+.-  ..+-.++ |+|. +.+.++...
T Consensus       326 al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdI---dp~v~~l~~v~ly-diDdL~~i~~~n~~  401 (519)
T PLN00203        326 CAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNV---GACVSELESARVY-NVDDLKEVVAANKE  401 (519)
T ss_pred             HHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCC---ccccccCCCCeEE-EeccHHHHHHHhHH
Confidence            67899999999999887 78887643          2489999999975   2210  0122333 5552 121111000


Q ss_pred             ecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          186 ITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       186 ~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      .-    ---..-+..++..-+..|+.|+.
T Consensus       402 ~R----~~~~~~Ae~II~ee~~~F~~w~~  426 (519)
T PLN00203        402 DR----LRKAMEAQTIIREESKNFEAWRD  426 (519)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            00    00111245677777888888864

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.79  E-value=1.7e-08  Score=93.36  Aligned_cols=94  Identities=23%  Similarity=0.326  Sum_probs=78.4

Q ss_pred             CcHHHHHHHHHHh-CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEE
Q 027976           62 CTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIV  127 (216)
Q Consensus        62 ~Ta~g~~~~L~~~-~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIV  127 (216)
                      .|..+++..+++. +..+.|++|+|+|.|.+ |+.++..|...|++|++++++.             .++.+.++.+|+|
T Consensus       193 gt~~s~~~ai~rat~~~l~Gk~VlViG~G~I-G~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVV  271 (425)
T PRK05476        193 GTGESLLDGIKRATNVLIAGKVVVVAGYGDV-GKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIF  271 (425)
T ss_pred             HHHhhhHHHHHHhccCCCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEE
Confidence            4678888877766 77889999999999875 9999999999999999997653             1356778899999


Q ss_pred             EEecCCCCcccCCc---ccCCcEEEEeeeCCc
Q 027976          128 IAAAGVANLVRGSW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       128 Isatg~p~~i~~~~---i~~g~vViDvg~~~~  156 (216)
                      |++||.++.+..++   +++|++++++|....
T Consensus       272 I~aTG~~~vI~~~~~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        272 VTATGNKDVITAEHMEAMKDGAILANIGHFDN  303 (425)
T ss_pred             EECCCCHHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence            99999888776544   589999999998764

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.76  E-value=2.5e-08  Score=92.13  Aligned_cols=94  Identities=18%  Similarity=0.264  Sum_probs=73.5

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC-----------------CHHhhccCC
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----------------NPEQITSEA  124 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-----------------~l~~~~~~A  124 (216)
                      .+..++++.+....++.|++|+|+|+|.+ |+.++..|...|+ .|++++++..                 ++.+.+.++
T Consensus       165 v~~~Av~~a~~~~~~~~~~~vlViGaG~i-G~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~a  243 (423)
T PRK00045        165 VASAAVELAKQIFGDLSGKKVLVIGAGEM-GELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEA  243 (423)
T ss_pred             HHHHHHHHHHHhhCCccCCEEEEECchHH-HHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccC
Confidence            34455666655434689999999999886 9999999999997 6999988621                 233567889


Q ss_pred             CEEEEecCCCCc-ccCCcccC--------CcEEEEeeeCCcc
Q 027976          125 DIVIAAAGVANL-VRGSWLKP--------GAVVLDVGTCPVD  157 (216)
Q Consensus       125 DIVIsatg~p~~-i~~~~i~~--------g~vViDvg~~~~~  157 (216)
                      |+||++||.|++ ++.+|+++        +.+++|++.+++.
T Consensus       244 DvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdi  285 (423)
T PRK00045        244 DIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDI  285 (423)
T ss_pred             CEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCC
Confidence            999999999886 78888843        4799999988765

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.73  E-value=2.6e-08  Score=91.98  Aligned_cols=93  Identities=24%  Similarity=0.288  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCC-----------------CHHhhccCCC
Q 027976           64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-----------------NPEQITSEAD  125 (216)
Q Consensus        64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~-----------------~l~~~~~~AD  125 (216)
                      +.+++++.++...++.|++++|+|+|.+ |+.++..|...| .+|++++|+..                 ++.+.+.++|
T Consensus       164 ~~~Av~la~~~~~~l~~~~VlViGaG~i-G~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aD  242 (417)
T TIGR01035       164 SSAAVELAERIFGSLKGKKALLIGAGEM-GELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEAD  242 (417)
T ss_pred             HHHHHHHHHHHhCCccCCEEEEECChHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCC
Confidence            4556666666555689999999999886 999999999999 57999988631                 2446678999


Q ss_pred             EEEEecCCCCc-ccCCcccC-------CcEEEEeeeCCcc
Q 027976          126 IVIAAAGVANL-VRGSWLKP-------GAVVLDVGTCPVD  157 (216)
Q Consensus       126 IVIsatg~p~~-i~~~~i~~-------g~vViDvg~~~~~  157 (216)
                      +||++||.|++ ++.+|+++       ..+++|++.+++.
T Consensus       243 vVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdi  282 (417)
T TIGR01035       243 IVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDV  282 (417)
T ss_pred             EEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            99999998886 78888743       3599999977754

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.64  E-value=8.1e-08  Score=86.28  Aligned_cols=91  Identities=25%  Similarity=0.395  Sum_probs=74.5

Q ss_pred             HHHHH-HHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEe
Q 027976           65 KGCIE-LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        65 ~g~~~-~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsa  130 (216)
                      .+.+. +++.+++-+.||+++|.|.|.. ||.+|+.|...||+|.|..-..             ..+.++.+.+||+||+
T Consensus       193 qS~~DgI~RaTn~liaGK~vVV~GYG~v-GrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~  271 (420)
T COG0499         193 QSLLDGILRATNVLLAGKNVVVAGYGWV-GRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTA  271 (420)
T ss_pred             hhHHHHHHhhhceeecCceEEEeccccc-chHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEc
Confidence            44333 3445788899999999999985 9999999999999998886553             1356788999999999


Q ss_pred             cCCCCcccCCcc---cCCcEEEEeeeCCc
Q 027976          131 AGVANLVRGSWL---KPGAVVLDVGTCPV  156 (216)
Q Consensus       131 tg~p~~i~~~~i---~~g~vViDvg~~~~  156 (216)
                      ||..+.|+.+++   |+|+++.++|+.-.
T Consensus       272 TGnkdVi~~eh~~~MkDgaIl~N~GHFd~  300 (420)
T COG0499         272 TGNKDVIRKEHFEKMKDGAILANAGHFDV  300 (420)
T ss_pred             cCCcCccCHHHHHhccCCeEEecccccce
Confidence            999988988875   67999999996543

>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.63  E-value=1.9e-08  Score=77.47  Aligned_cols=33  Identities=39%  Similarity=0.494  Sum_probs=29.0

Q ss_pred             ccCccEEEEccCCCCCCCHHHHHhcCCcccccC
Q 027976            8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVD   40 (216)
Q Consensus         8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvd   40 (216)
                      +-++|||+||+|||+|+++.+++++|+|+||||
T Consensus        85 D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVD  117 (117)
T PF00763_consen   85 DPSVHGILVQLPLPKHIDERKILEAIDPEKDVD  117 (117)
T ss_dssp             -TT-SEEEEESSSSTTSHHHHHHHTS-GGGBTT
T ss_pred             CCCCCEEEEcCCCCCCccHHHHHhccCcccCCC
Confidence            357999999999999999999999999999997

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.61  E-value=2.1e-07  Score=85.68  Aligned_cols=94  Identities=28%  Similarity=0.378  Sum_probs=75.4

Q ss_pred             CcHHHHHHHHHH-hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEE
Q 027976           62 CTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIV  127 (216)
Q Consensus        62 ~Ta~g~~~~L~~-~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIV  127 (216)
                      +|...+++.+.+ .++.+.|++|+|+|.|.+ |+.+++.|...|++|+++.+..             .++.+.++.+|+|
T Consensus       176 g~g~s~~~~i~r~t~~~l~Gk~VvViG~G~I-G~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVV  254 (406)
T TIGR00936       176 GTGQSTIDGILRATNLLIAGKTVVVAGYGWC-GKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIF  254 (406)
T ss_pred             ccchhHHHHHHHhcCCCCCcCEEEEECCCHH-HHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEE
Confidence            355555555544 577899999999999985 9999999999999999986543             1356778899999


Q ss_pred             EEecCCCCcccC---CcccCCcEEEEeeeCCc
Q 027976          128 IAAAGVANLVRG---SWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       128 Isatg~p~~i~~---~~i~~g~vViDvg~~~~  156 (216)
                      |+++|.++.+..   ..+++|++++.+|....
T Consensus       255 ItaTG~~~vI~~~~~~~mK~GailiN~G~~~~  286 (406)
T TIGR00936       255 ITATGNKDVIRGEHFENMKDGAIVANIGHFDV  286 (406)
T ss_pred             EECCCCHHHHHHHHHhcCCCCcEEEEECCCCc
Confidence            999998887776   44689999999998654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.58  E-value=2.1e-07  Score=82.75  Aligned_cols=93  Identities=19%  Similarity=0.254  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC-----------------CHHhhccCCC
Q 027976           64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----------------NPEQITSEAD  125 (216)
Q Consensus        64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-----------------~l~~~~~~AD  125 (216)
                      +..+++..+...-++.+++|+|+|+|.+ |+.++..|...|+ .|++++|+.+                 ++.+.++++|
T Consensus       162 ~~~Av~~a~~~~~~l~~~~V~ViGaG~i-G~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aD  240 (311)
T cd05213         162 SSAAVELAEKIFGNLKGKKVLVIGAGEM-GELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEAD  240 (311)
T ss_pred             HHHHHHHHHHHhCCccCCEEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCC
Confidence            3445666666544589999999999886 9999999988775 6999988631                 2456678899


Q ss_pred             EEEEecCCCCc--ccCC----cccCCcEEEEeeeCCcc
Q 027976          126 IVIAAAGVANL--VRGS----WLKPGAVVLDVGTCPVD  157 (216)
Q Consensus       126 IVIsatg~p~~--i~~~----~i~~g~vViDvg~~~~~  157 (216)
                      +||++||.|++  +..+    ...++.+++|++.+++.
T Consensus       241 vVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi  278 (311)
T cd05213         241 VVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDI  278 (311)
T ss_pred             EEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCC
Confidence            99999998876  1111    12247899999987764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.58  E-value=2.4e-07  Score=85.54  Aligned_cols=96  Identities=26%  Similarity=0.364  Sum_probs=74.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCE
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADI  126 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADI  126 (216)
                      |-|--..+-.+++..++.+.|++|+|+|+|.+ |+.++..+...|++|+++.+..             ..+.+.++.+|+
T Consensus       182 ~g~g~s~~~~i~r~t~~~l~GktVvViG~G~I-G~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDV  260 (413)
T cd00401         182 YGCRESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDI  260 (413)
T ss_pred             chhchhhHHHHHHhcCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCE
Confidence            33333334445556688899999999999985 9999999999999999986652             134577889999


Q ss_pred             EEEecCCCCcccC---CcccCCcEEEEeeeCCc
Q 027976          127 VIAAAGVANLVRG---SWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       127 VIsatg~p~~i~~---~~i~~g~vViDvg~~~~  156 (216)
                      ||+++|.++.+..   +.+++|.+++.+|..+.
T Consensus       261 VI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~  293 (413)
T cd00401         261 FVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDV  293 (413)
T ss_pred             EEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            9999998876654   45689999999997643

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.56  E-value=2.9e-07  Score=83.82  Aligned_cols=124  Identities=25%  Similarity=0.291  Sum_probs=83.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------CCHHhhccCCCEEEEecCC---
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAGV---  133 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~---  133 (216)
                      +.+++|+|+|+|.+ |+.++..|...|++|++++++.                     .++.+.++++|+||++++.   
T Consensus       165 l~~~~VlViGaG~v-G~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       165 VEPGDVTIIGGGVV-GTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCceEEEEcCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            57789999999875 9999999999999999997642                     1345677899999999843   


Q ss_pred             --CCcccCCcc---cCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhh---HcceecccCCcccHHHHHHHHHHH
Q 027976          134 --ANLVRGSWL---KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNT  205 (216)
Q Consensus       134 --p~~i~~~~i---~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~---~~~~~tpvpgGvGp~T~amLl~n~  205 (216)
                        |.+++.+++   +++.+|+|+++.+.-     ..+ .++ .+..|++.+..   ..-++.-.|+-+ |.|...++.|.
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva~d~GG-----~~e-~~~-~t~~d~p~~~~~Gv~~~~v~nlP~~~-p~~aS~~~~~~  315 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVAIDQGG-----CVE-TSR-PTTHDQPTYAVHDVVHYCVANMPGAV-PKTSTYALTNA  315 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEecCCCC-----Ccc-CCc-CCCCCCCEEEECCeEEEEeCCccccc-HHHHHHHHHHH
Confidence              444666664   689999999987631     000 001 12222212111   122333457666 99999999888


Q ss_pred             HHHHH
Q 027976          206 LDSAK  210 (216)
Q Consensus       206 ~~a~~  210 (216)
                      +..+-
T Consensus       316 l~~~l  320 (370)
T TIGR00518       316 TMPYV  320 (370)
T ss_pred             HHHHH
Confidence            76553

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.46  E-value=7.5e-07  Score=79.71  Aligned_cols=92  Identities=16%  Similarity=0.233  Sum_probs=70.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHH-hCCC-EEEEEeCCC---------------------CC
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHA-TVSIVHALT---------------------KN  116 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~-~~ga-~Vti~~~~t---------------------~~  116 (216)
                      +.+.+.+++......  ....++++|||+|+. |+..+..|. .++. +|++++|+.                     .+
T Consensus       111 ~RTaa~~~laa~~la--~~~~~~v~iiGaG~q-A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~  187 (326)
T TIGR02992       111 VRTAAAGAVAARHLA--REDSSVVAIFGAGMQ-ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATD  187 (326)
T ss_pred             HHHHHHHHHHHHHhC--CCCCcEEEEECCCHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCC
Confidence            344556666655322  235689999999997 999988886 4674 699998862                     24


Q ss_pred             HHhhccCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          117 PEQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       117 l~~~~~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      +++.+++||+||++|+.+.+ ++.+|+++|+.+..+|.+
T Consensus       188 ~~~av~~aDiVvtaT~s~~p~i~~~~l~~g~~i~~vg~~  226 (326)
T TIGR02992       188 PRAAMSGADIIVTTTPSETPILHAEWLEPGQHVTAMGSD  226 (326)
T ss_pred             HHHHhccCCEEEEecCCCCcEecHHHcCCCcEEEeeCCC
Confidence            56678999999999998776 788999999999999864

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PLN02494 adenosylhomocysteinase

Probab=98.45  E-value=6.1e-07  Score=83.81  Aligned_cols=91  Identities=24%  Similarity=0.330  Sum_probs=72.8

Q ss_pred             cHHHHHHHHH-HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhccCCCEEE
Q 027976           63 TPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVI  128 (216)
Q Consensus        63 Ta~g~~~~L~-~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~ADIVI  128 (216)
                      |...+++.+. .+++.+.||+++|+|.|.+ |+.+|..+...|++|+++.+...             ++.+.++++|+||
T Consensus       236 tgqS~~d~i~r~t~i~LaGKtVvViGyG~I-Gr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI  314 (477)
T PLN02494        236 CRHSLPDGLMRATDVMIAGKVAVICGYGDV-GKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFV  314 (477)
T ss_pred             ccccHHHHHHHhcCCccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEE
Confidence            3455555554 4577899999999999985 99999999999999999866531             3567788999999


Q ss_pred             EecCCCCcccC---CcccCCcEEEEeeeC
Q 027976          129 AAAGVANLVRG---SWLKPGAVVLDVGTC  154 (216)
Q Consensus       129 satg~p~~i~~---~~i~~g~vViDvg~~  154 (216)
                      +++|..+.+..   +.++++++++++|..
T Consensus       315 ~tTGt~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        315 TTTGNKDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             ECCCCccchHHHHHhcCCCCCEEEEcCCC
Confidence            99998877644   456899999999984

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.43  E-value=6.5e-07  Score=73.29  Aligned_cols=82  Identities=26%  Similarity=0.361  Sum_probs=64.6

Q ss_pred             HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCC-C---C
Q 027976           73 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-A---N  135 (216)
Q Consensus        73 ~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~-p---~  135 (216)
                      ..+.++.||++.|+|.|.+ |+.+|..|...|++|+.+++..             .++.+.+++||+|+...+. +   +
T Consensus        29 ~~~~~l~g~tvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~  107 (178)
T PF02826_consen   29 FPGRELRGKTVGIIGYGRI-GRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRG  107 (178)
T ss_dssp             TTBS-STTSEEEEESTSHH-HHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTT
T ss_pred             CCccccCCCEEEEEEEcCC-cCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccce
Confidence            3456799999999999986 9999999999999999998863             3678899999999998883 3   3


Q ss_pred             cccCCc---ccCCcEEEEeeeCC
Q 027976          136 LVRGSW---LKPGAVVLDVGTCP  155 (216)
Q Consensus       136 ~i~~~~---i~~g~vViDvg~~~  155 (216)
                      +++.+.   +++|+++|+++-..
T Consensus       108 li~~~~l~~mk~ga~lvN~aRG~  130 (178)
T PF02826_consen  108 LINAEFLAKMKPGAVLVNVARGE  130 (178)
T ss_dssp             SBSHHHHHTSTTTEEEEESSSGG
T ss_pred             eeeeeeeeccccceEEEeccchh
Confidence            577665   47899999998654

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.33  E-value=2.3e-06  Score=76.69  Aligned_cols=92  Identities=17%  Similarity=0.251  Sum_probs=71.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC---------------------CC
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT---------------------KN  116 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t---------------------~~  116 (216)
                      +.+.+.|++......  ....++++|||+|+. |+..+..|.. ++. +|++++|+.                     .+
T Consensus       114 ~rT~a~~~~a~~~la--~~~~~~v~IiGaG~~-a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d  190 (330)
T PRK08291        114 VRTAAAGAVAARHLA--REDASRAAVIGAGEQ-ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARD  190 (330)
T ss_pred             HHHHHHHHHHHHHhC--CCCCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCC
Confidence            455567777776422  335689999999997 9988888774 554 699998761                     34


Q ss_pred             HHhhccCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          117 PEQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       117 l~~~~~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      +.+.+++||+||++|+...+ ++.+|+++|+.|..++.+
T Consensus       191 ~~~al~~aDiVi~aT~s~~p~i~~~~l~~g~~v~~vg~d  229 (330)
T PRK08291        191 VHEAVAGADIIVTTTPSEEPILKAEWLHPGLHVTAMGSD  229 (330)
T ss_pred             HHHHHccCCEEEEeeCCCCcEecHHHcCCCceEEeeCCC
Confidence            56778999999999998776 788999999999888765

>PLN02928 oxidoreductase family protein

Probab=98.30  E-value=2.1e-06  Score=77.58  Aligned_cols=136  Identities=21%  Similarity=0.268  Sum_probs=89.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------------CCHHhhccCCCEEEEe
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------------~~l~~~~~~ADIVIsa  130 (216)
                      .++.||++.|||.|.+ |+.+|..|...|++|+.+++..                         .++.+.+++||+|+.+
T Consensus       155 ~~l~gktvGIiG~G~I-G~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        155 DTLFGKTVFILGYGAI-GIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             cCCCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            4689999999999986 9999999999999999987641                         2467889999999999


Q ss_pred             cCC-C---CcccCCc---ccCCcEEEEeeeCCccCCCCC--CCCCCCeEec---ccChHH--------HhhHcceecccC
Q 027976          131 AGV-A---NLVRGSW---LKPGAVVLDVGTCPVDVSVDP--SCEYGYRLMG---DVCYEE--------AMRLASVITPVP  190 (216)
Q Consensus       131 tg~-p---~~i~~~~---i~~g~vViDvg~~~~~~~~~~--~~~~~~~l~G---Dvd~~~--------~~~~~~~~tpvp  190 (216)
                      ++. +   +++..+.   +|+|+++||++--...++ +.  .....+++.|   ||-..+        .....-.+||=.
T Consensus       234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde-~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHi  312 (347)
T PLN02928        234 CTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDY-DAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHV  312 (347)
T ss_pred             CCCChHhhcccCHHHHhcCCCCeEEEECCCccccCH-HHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcC
Confidence            884 2   3566654   478999999986554210 00  0000123322   552111        111234677777


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHh
Q 027976          191 GGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       191 gGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      +|.-.-+..-+....+...++|.
T Consensus       313 a~~t~~~~~~~~~~~~~nl~~~~  335 (347)
T PLN02928        313 AGVTEYSYRSMGKIVGDAALQLH  335 (347)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHH
Confidence            77665555555566666666664

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=98.28  E-value=3.5e-06  Score=73.45  Aligned_cols=147  Identities=14%  Similarity=0.188  Sum_probs=96.9

Q ss_pred             ccEEEEccCCCCC-------CCHHHHHhcCCcccccC----ccCcc-----ccccccccCC------CCcc-CCCcHHHH
Q 027976           11 PCQIIIRIHQLMH-------LDEGKILDAVSLEKDVD----GFHPL-----NIGNLAMRGR------EPLF-IPCTPKGC   67 (216)
Q Consensus        11 ~~Gi~v~~Pl~~~-------~~~~~i~~~i~p~KDvd----g~~~~-----n~g~l~~~~~------~~~~-~p~Ta~g~   67 (216)
                      +.|+++..||-+.       .-.++++++....++..    |+.-.     |+|.-..-.+      +-.- -.-|++++
T Consensus        71 ieg~l~~~pllpe~~~s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIVgn~~~n~q~~~~e~t~~~~ttgns~Tayaa  150 (351)
T COG5322          71 IEGYLVESPLLPEMLRSRPKAATRRVLNAMALAQKLGADVTGLGGFSSIVGNLGQNVQVRNVELTFTRFTTGNSHTAYAA  150 (351)
T ss_pred             EEEEEEccccCHHHHhhCHHHHHHHHHHHHHHHHHcCCeEEeecchhhhhccccccccccceEEEEEecccCCccchHHH
Confidence            5799999998642       23356677766655532    33111     2222110000      0011 12366664


Q ss_pred             ----HHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHH-hhcc
Q 027976           68 ----IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPE-QITS  122 (216)
Q Consensus        68 ----~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~-~~~~  122 (216)
                          .+...+.+++++...|.|+|+-|.+|.++++.|+.+++.....+|...                    ++. +++.
T Consensus       151 ~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~  230 (351)
T COG5322         151 CRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQ  230 (351)
T ss_pred             HHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccc
Confidence                444457799999999999999999999999999999988777775420                    122 3344


Q ss_pred             CCCEEEEecCCCCc-ccCCcccCCcEEEEeeeCCcc
Q 027976          123 EADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVD  157 (216)
Q Consensus       123 ~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~~~~  157 (216)
                      ++++|.+|+..++. |.+.++|||++++|-+|+.+-
T Consensus       231 e~i~v~vAs~~~g~~I~pq~lkpg~~ivD~g~P~dv  266 (351)
T COG5322         231 EDILVWVASMPKGVEIFPQHLKPGCLIVDGGYPKDV  266 (351)
T ss_pred             cceEEEEeecCCCceechhhccCCeEEEcCCcCccc
Confidence            44555588776665 899999999999999998764

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.21  E-value=5.7e-06  Score=69.17  Aligned_cols=94  Identities=17%  Similarity=0.171  Sum_probs=65.9

Q ss_pred             CCcHHHHHHHHHH----h--CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH--------------Hhh
Q 027976           61 PCTPKGCIELLIR----S--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------EQI  120 (216)
Q Consensus        61 p~Ta~g~~~~L~~----~--~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l--------------~~~  120 (216)
                      |.|++|+...+++    .  +.+++||++.|+|.|. +|+.+++.|.+.|++|++++++.+.+              .+.
T Consensus         3 ~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~-vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l   81 (200)
T cd01075           3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGK-VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEI   81 (200)
T ss_pred             ChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhh
Confidence            6788887655543    2  7789999999999997 59999999999999999887753211              122


Q ss_pred             c-cCCCEEEEecCCCCcccCCcccC--CcEEEEeeeCCc
Q 027976          121 T-SEADIVIAAAGVANLVRGSWLKP--GAVVLDVGTCPV  156 (216)
Q Consensus       121 ~-~~ADIVIsatg~p~~i~~~~i~~--g~vViDvg~~~~  156 (216)
                      . .++|+++.++.. +.++.+.++.  ..+|++-+-+|.
T Consensus        82 ~~~~~Dv~vp~A~~-~~I~~~~~~~l~~~~v~~~AN~~~  119 (200)
T cd01075          82 YSVDADVFAPCALG-GVINDDTIPQLKAKAIAGAANNQL  119 (200)
T ss_pred             ccccCCEEEecccc-cccCHHHHHHcCCCEEEECCcCcc
Confidence            2 368999966542 3455554432  456777776653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.20  E-value=3.5e-06  Score=74.60  Aligned_cols=84  Identities=26%  Similarity=0.407  Sum_probs=71.4

Q ss_pred             HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCCcccC
Q 027976           73 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRG  139 (216)
Q Consensus        73 ~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~~i~~  139 (216)
                      .+.+-+.||.++|.|.|.. |+..|..|...|+.|+|.....             -.+.+.++++||+|++||....|..
T Consensus       207 aTDvM~aGKv~Vv~GYGdV-GKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~dii~~  285 (434)
T KOG1370|consen  207 ATDVMIAGKVAVVCGYGDV-GKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCKDIITG  285 (434)
T ss_pred             hhhheecccEEEEeccCcc-chhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCCcchhhH
Confidence            4566689999999999985 9999999999999999986553             2467899999999999999888887


Q ss_pred             Ccc---cCCcEEEEeeeCCcc
Q 027976          140 SWL---KPGAVVLDVGTCPVD  157 (216)
Q Consensus       140 ~~i---~~g~vViDvg~~~~~  157 (216)
                      ++|   +++++|+++|+.-.|
T Consensus       286 ~H~~~mk~d~IvCN~Ghfd~E  306 (434)
T KOG1370|consen  286 EHFDQMKNDAIVCNIGHFDTE  306 (434)
T ss_pred             HHHHhCcCCcEEeccccccce
Confidence            776   678999999987544

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.18  E-value=9.6e-06  Score=76.71  Aligned_cols=90  Identities=23%  Similarity=0.302  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhCC----------CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------
Q 027976           65 KGCIELLIRSGV----------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------  115 (216)
Q Consensus        65 ~g~~~~L~~~~~----------~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------  115 (216)
                      .|+++....++.          ...+.+|+|+|+|.+ |..++..+...|+.|+++.++..                   
T Consensus       139 ~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~i-Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e  217 (511)
T TIGR00561       139 RAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE  217 (511)
T ss_pred             HHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccc
Confidence            456666655542          245689999999886 99999999999999998855410                   


Q ss_pred             --------------C--------HHhhccCCCEEEEec---CC--CCcccCCcc---cCCcEEEEeeeCC
Q 027976          116 --------------N--------PEQITSEADIVIAAA---GV--ANLVRGSWL---KPGAVVLDVGTCP  155 (216)
Q Consensus       116 --------------~--------l~~~~~~ADIVIsat---g~--p~~i~~~~i---~~g~vViDvg~~~  155 (216)
                                    +        +.+.++++||||+++   |+  |.+++.+++   |+|.+|+|++..+
T Consensus       218 ~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~  287 (511)
T TIGR00561       218 EGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ  287 (511)
T ss_pred             cccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence                          0        345678999999999   54  545888775   7899999999864

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.14  E-value=9.8e-06  Score=74.20  Aligned_cols=144  Identities=21%  Similarity=0.247  Sum_probs=95.7

Q ss_pred             HHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCC-C-----
Q 027976           70 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A-----  134 (216)
Q Consensus        70 ~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~-p-----  134 (216)
                      +.++.+.++.||++.|||.|.+ |+.++..|...|++|..+++..         .++.+.+++||+|+..++. +     
T Consensus       106 l~r~~g~~l~gktvGIIG~G~I-G~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~  184 (381)
T PRK00257        106 LAEREGVDLAERTYGVVGAGHV-GGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHP  184 (381)
T ss_pred             HhcccCCCcCcCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCcccc
Confidence            3345678899999999999885 9999999999999999886531         2578889999999988873 2     


Q ss_pred             --CcccCCc---ccCCcEEEEeeeCCccCCC---CCCCCCC--CeEecccCh------HHHhhHcceecccCCcccHHHH
Q 027976          135 --NLVRGSW---LKPGAVVLDVGTCPVDVSV---DPSCEYG--YRLMGDVCY------EEAMRLASVITPVPGGVGPMTV  198 (216)
Q Consensus       135 --~~i~~~~---i~~g~vViDvg~~~~~~~~---~~~~~~~--~~l~GDvd~------~~~~~~~~~~tpvpgGvGp~T~  198 (216)
                        +++..+.   +++|+++|+++--...++.   +.. .++  ....=||=.      ....+..-.+||=.+|...=..
T Consensus       185 T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL-~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~~  263 (381)
T PRK00257        185 TRHLLDEAFLASLRPGAWLINASRGAVVDNQALREAL-LSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDGK  263 (381)
T ss_pred             ccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH-HhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHHH
Confidence              3465543   5789999999876543100   000 001  012334421      1122335567887788776655


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 027976          199 AMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       199 amLl~n~~~a~~~~~~~  215 (216)
                      ....+..++.+++|++.
T Consensus       264 ~r~~~~~~~nl~~~~~~  280 (381)
T PRK00257        264 ARGTAQIYQALCRFFGI  280 (381)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            56666666677777654

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.13  E-value=9.9e-06  Score=74.09  Aligned_cols=143  Identities=18%  Similarity=0.231  Sum_probs=94.3

Q ss_pred             HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCC-C------
Q 027976           71 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A------  134 (216)
Q Consensus        71 L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~-p------  134 (216)
                      .++.+.++.||++.|||.|.+ |+.+|..|...|++|..+++..         .++.+.+++||||+..++. +      
T Consensus       107 ~r~~g~~L~gktvGIIG~G~I-G~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T  185 (378)
T PRK15438        107 AERDGFSLHDRTVGIVGVGNV-GRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKT  185 (378)
T ss_pred             hccCCCCcCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCccccc
Confidence            345678899999999999886 9999999999999999986421         2588899999999977762 2      


Q ss_pred             -CcccCCc---ccCCcEEEEeeeCCccCCC---CCCCCCC--CeEecccChH------HHhhHcceecccCCcccHHHHH
Q 027976          135 -NLVRGSW---LKPGAVVLDVGTCPVDVSV---DPSCEYG--YRLMGDVCYE------EAMRLASVITPVPGGVGPMTVA  199 (216)
Q Consensus       135 -~~i~~~~---i~~g~vViDvg~~~~~~~~---~~~~~~~--~~l~GDvd~~------~~~~~~~~~tpvpgGvGp~T~a  199 (216)
                       +++..+.   +++|+++|+++--...++.   +.. .++  ....=||-..      ...+.....||=.+|...=+..
T Consensus       186 ~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL-~~g~~~ga~LDV~e~EP~~~~~Ll~~~~i~TPHiAg~s~e~~~  264 (378)
T PRK15438        186 LHLADEKLIRSLKPGAILINACRGAVVDNTALLTCL-NEGQKLSVVLDVWEGEPELNVELLKKVDIGTPHIAGYTLEGKA  264 (378)
T ss_pred             ccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHH-HhCCCcEEEEecCCCCCCCchhhhhcCCEECCccCcCcHHHHH
Confidence             2355443   5789999999876643100   000 000  1133344211      1222334778888887765555


Q ss_pred             HHHHHHHHHHHHHhCC
Q 027976          200 MLLSNTLDSAKRAYGF  215 (216)
Q Consensus       200 mLl~n~~~a~~~~~~~  215 (216)
                      ......++++.+|+|.
T Consensus       265 ~~~~~~~~~l~~~~~~  280 (378)
T PRK15438        265 RGTTQVFEAYSKFIGH  280 (378)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            5556666666666664

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=98.13  E-value=4.9e-06  Score=69.75  Aligned_cols=113  Identities=19%  Similarity=0.292  Sum_probs=72.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-CC-----------------HHhhccCCCEEEEecCCCCc-
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KN-----------------PEQITSEADIVIAAAGVANL-  136 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~-----------------l~~~~~~ADIVIsatg~p~~-  136 (216)
                      ++++||+|+|||+|.. |...+..|.+.|++|+++.+.- +.                 ....+..+|+||.||+.+.. 
T Consensus         6 l~l~~k~vLVIGgG~v-a~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN   84 (202)
T PRK06718          6 IDLSNKRVVIVGGGKV-AGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN   84 (202)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH
Confidence            4689999999999885 9988999999999999996542 11                 12457889999999998763 


Q ss_pred             --ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhh---HcceecccCCcccHHHHHHHHHHHHH
Q 027976          137 --VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNTLD  207 (216)
Q Consensus       137 --i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~---~~~~~tpvpgGvGp~T~amLl~n~~~  207 (216)
                        +.... +.+. .+++.-.|..              +|+-+...-+   ..-.++  -+|-+|..+..|=++.-.
T Consensus        85 ~~i~~~a-~~~~-lvn~~d~~~~--------------~~f~~Pa~~~~g~l~iaIs--T~G~sP~la~~lr~~ie~  142 (202)
T PRK06718         85 EQVKEDL-PENA-LFNVITDAES--------------GNVVFPSALHRGKLTISVS--TDGASPKLAKKIRDELEA  142 (202)
T ss_pred             HHHHHHH-HhCC-cEEECCCCcc--------------CeEEEeeEEEcCCeEEEEE--CCCCChHHHHHHHHHHHH
Confidence              33222 3444 4455444322              2222233211   233444  578899888776554443

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.13  E-value=8.1e-06  Score=73.35  Aligned_cols=80  Identities=18%  Similarity=0.292  Sum_probs=65.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCCC----CcccC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA----NLVRG  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~p----~~i~~  139 (216)
                      .++.||++.|||.|.+ |+.+|..|...|++|..+++..            .++.+.+++||+|+.+++..    +.+..
T Consensus       146 ~~L~gktvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~  224 (333)
T PRK13243        146 YDVYGKTIGIIGFGRI-GQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINE  224 (333)
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCH
Confidence            4689999999999886 9999999999999999887642            25678899999999999842    24554


Q ss_pred             C---cccCCcEEEEeeeCCc
Q 027976          140 S---WLKPGAVVLDVGTCPV  156 (216)
Q Consensus       140 ~---~i~~g~vViDvg~~~~  156 (216)
                      +   .+++|+++||++--..
T Consensus       225 ~~~~~mk~ga~lIN~aRg~~  244 (333)
T PRK13243        225 ERLKLMKPTAILVNTARGKV  244 (333)
T ss_pred             HHHhcCCCCeEEEECcCchh
Confidence            3   4588999999987654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.12  E-value=1.7e-05  Score=70.99  Aligned_cols=76  Identities=17%  Similarity=0.177  Sum_probs=61.5

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHH-hCCC-EEEEEeCCC---------------------CCHHhhccCCCEEEEecCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQ-RHHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~-~~ga-~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p  134 (216)
                      ...++++|||+|+. |+..+..++ .+++ +|++++|+.                     .++++.+++||+||++|+++
T Consensus       125 ~~~~~v~iiGaG~~-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~  203 (325)
T PRK08618        125 EDAKTLCLIGTGGQ-AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK  203 (325)
T ss_pred             CCCcEEEEECCcHH-HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC
Confidence            35789999999997 988777664 4565 599998752                     24567788999999999988


Q ss_pred             Cc-ccCCcccCCcEEEEeeeCC
Q 027976          135 NL-VRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       135 ~~-i~~~~i~~g~vViDvg~~~  155 (216)
                      ++ +. +|+++|+.|+-+|.+.
T Consensus       204 ~p~i~-~~l~~G~hV~~iGs~~  224 (325)
T PRK08618        204 TPVFS-EKLKKGVHINAVGSFM  224 (325)
T ss_pred             CcchH-HhcCCCcEEEecCCCC
Confidence            87 78 9999999999998753

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.06  E-value=2.6e-05  Score=69.42  Aligned_cols=76  Identities=25%  Similarity=0.325  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHh-CC-CEEEEEeCCC--------------------CCHHhhccCCCEEEEecCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~-~g-a~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~p  134 (216)
                      ....+++.|||+|.. |++.+..+.. ++ .+|++++|+.                    .+..+.+++|||||++|+.+
T Consensus       122 ~~~~~~v~iiG~G~~-a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~  200 (314)
T PRK06141        122 RKDASRLLVVGTGRL-ASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST  200 (314)
T ss_pred             CCCCceEEEECCcHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC
Confidence            356899999999987 9998875554 45 5799998862                    23556788999999999987


Q ss_pred             Cc-ccCCcccCCcEEEEeeeC
Q 027976          135 NL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       135 ~~-i~~~~i~~g~vViDvg~~  154 (216)
                      .+ ++.+|+++|+ +||....
T Consensus       201 ~pvl~~~~l~~g~-~i~~ig~  220 (314)
T PRK06141        201 EPLVRGEWLKPGT-HLDLVGN  220 (314)
T ss_pred             CCEecHHHcCCCC-EEEeeCC
Confidence            76 7889999999 5565443

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.06  E-value=3.2e-05  Score=68.67  Aligned_cols=78  Identities=17%  Similarity=0.148  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC-------------------CCHHhhccCCCEEEEecCCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT-------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t-------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      ....++++|+|+|+. |+..+.++.. ++. +|.+++|+.                   .++++.+++||+||++|++++
T Consensus       122 ~~~~~~v~IiGaG~q-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~  200 (304)
T PRK07340        122 PAPPGDLLLIGTGVQ-ARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT  200 (304)
T ss_pred             CCCCCEEEEECCcHH-HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence            457899999999987 9998888865 564 599998762                   246678899999999999988


Q ss_pred             cccCCcccCCcEEEEeeeCC
Q 027976          136 LVRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       136 ~i~~~~i~~g~vViDvg~~~  155 (216)
                      ++-..|++||+.|.-+|.+.
T Consensus       201 Pl~~~~~~~g~hi~~iGs~~  220 (304)
T PRK07340        201 PVYPEAARAGRLVVAVGAFT  220 (304)
T ss_pred             ceeCccCCCCCEEEecCCCC
Confidence            74234899999999998653

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=98.05  E-value=1.5e-05  Score=70.93  Aligned_cols=80  Identities=29%  Similarity=0.338  Sum_probs=65.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCC-C---CcccCCc-
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A---NLVRGSW-  141 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~-p---~~i~~~~-  141 (216)
                      .++.||++.|||.|.+ |+.+|.++...|++|..+++..         .++.+.+++||+|+..++. +   ++|..+. 
T Consensus       141 ~~L~gktvGIiG~G~I-G~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~  219 (311)
T PRK08410        141 GEIKGKKWGIIGLGTI-GKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKEL  219 (311)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHH
Confidence            3689999999999986 9999999999999998887642         2578899999999988883 3   3566654 


Q ss_pred             --ccCCcEEEEeeeCCc
Q 027976          142 --LKPGAVVLDVGTCPV  156 (216)
Q Consensus       142 --i~~g~vViDvg~~~~  156 (216)
                        +|+++++|+++--..
T Consensus       220 ~~Mk~~a~lIN~aRG~v  236 (311)
T PRK08410        220 KLLKDGAILINVGRGGI  236 (311)
T ss_pred             HhCCCCeEEEECCCccc
Confidence              588999999987654

>PRK06932 glycerate dehydrogenase; Provisional

Probab=98.04  E-value=1.3e-05  Score=71.56  Aligned_cols=136  Identities=20%  Similarity=0.216  Sum_probs=87.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------CCHHhhccCCCEEEEecCC-C---CcccCCc--
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------KNPEQITSEADIVIAAAGV-A---NLVRGSW--  141 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------~~l~~~~~~ADIVIsatg~-p---~~i~~~~--  141 (216)
                      .++.||++.|||.|.+ |+.+|..|...|++|...++..        .++.+.+++||+|+...+. +   +++..+.  
T Consensus       143 ~~l~gktvgIiG~G~I-G~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~  221 (314)
T PRK06932        143 TDVRGSTLGVFGKGCL-GTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLA  221 (314)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHH
Confidence            3689999999999986 9999999999999987776532        2578999999999988883 3   3566654  


Q ss_pred             -ccCCcEEEEeeeCCccCCCCCC--CCCCCeE---ecccChHH-------Hh-----hHcceecccCCcccHHHHHHHHH
Q 027976          142 -LKPGAVVLDVGTCPVDVSVDPS--CEYGYRL---MGDVCYEE-------AM-----RLASVITPVPGGVGPMTVAMLLS  203 (216)
Q Consensus       142 -i~~g~vViDvg~~~~~~~~~~~--~~~~~~l---~GDvd~~~-------~~-----~~~~~~tpvpgGvGp~T~amLl~  203 (216)
                       +|+|+++|+++--...++. ..  ....+++   .-||-..+       ..     ...-.+||=.+|.-.-+..-+..
T Consensus       222 ~mk~ga~lIN~aRG~~Vde~-AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~  300 (314)
T PRK06932        222 LMKPTAFLINTGRGPLVDEQ-ALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVN  300 (314)
T ss_pred             hCCCCeEEEECCCccccCHH-HHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHH
Confidence             5889999999876543100 00  0000122   23442111       10     12345677777766555555555


Q ss_pred             HHHHHHHHHh
Q 027976          204 NTLDSAKRAY  213 (216)
Q Consensus       204 n~~~a~~~~~  213 (216)
                      ..+...++|+
T Consensus       301 ~~~~ni~~~~  310 (314)
T PRK06932        301 KVAQNIEEFV  310 (314)
T ss_pred             HHHHHHHHHH
Confidence            5565555554

>PRK06487 glycerate dehydrogenase; Provisional

Probab=98.03  E-value=1.5e-05  Score=71.14  Aligned_cols=79  Identities=18%  Similarity=0.285  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------CCHHhhccCCCEEEEecCC-C---CcccCCc---c
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------KNPEQITSEADIVIAAAGV-A---NLVRGSW---L  142 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------~~l~~~~~~ADIVIsatg~-p---~~i~~~~---i  142 (216)
                      ++.||++.|+|.|.+ |+.+|..|...|++|...++..       .++.+.+++||+|+...+. +   +++..+.   +
T Consensus       145 ~l~gktvgIiG~G~I-G~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~m  223 (317)
T PRK06487        145 ELEGKTLGLLGHGEL-GGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALM  223 (317)
T ss_pred             ccCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcC
Confidence            689999999999986 9999999999999988776542       2578999999999998884 3   3576654   4


Q ss_pred             cCCcEEEEeeeCCc
Q 027976          143 KPGAVVLDVGTCPV  156 (216)
Q Consensus       143 ~~g~vViDvg~~~~  156 (216)
                      |+|+++|+++--..
T Consensus       224 k~ga~lIN~aRG~v  237 (317)
T PRK06487        224 KPGALLINTARGGL  237 (317)
T ss_pred             CCCeEEEECCCccc
Confidence            78999999986654

>PRK07574 formate dehydrogenase; Provisional

Probab=98.03  E-value=1.4e-05  Score=73.25  Aligned_cols=135  Identities=16%  Similarity=0.184  Sum_probs=87.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCC-CC---cc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-AN---LV  137 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~-p~---~i  137 (216)
                      .++.||+|.|||.|.+ |+.+|..|...|++|..+++..              .++.+.+++||+|+...+. +.   ++
T Consensus       188 ~~L~gktVGIvG~G~I-G~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li  266 (385)
T PRK07574        188 YDLEGMTVGIVGAGRI-GLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF  266 (385)
T ss_pred             eecCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh
Confidence            4589999999999986 9999999999999999887652              2567889999999999884 32   45


Q ss_pred             cCCc---ccCCcEEEEeeeCCccCCC---CCCCCCCCe---EecccChHH--------HhhHcceecccCCcccHHHHHH
Q 027976          138 RGSW---LKPGAVVLDVGTCPVDVSV---DPSCEYGYR---LMGDVCYEE--------AMRLASVITPVPGGVGPMTVAM  200 (216)
Q Consensus       138 ~~~~---i~~g~vViDvg~~~~~~~~---~~~~~~~~~---l~GDvd~~~--------~~~~~~~~tpvpgGvGp~T~am  200 (216)
                      ..+.   +|+|+++||++--...++.   +.. .+ ++   ...||-+.+        ..-..-.+||=.+|.-.=+...
T Consensus       267 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL-~s-G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~  344 (385)
T PRK07574        267 DADVLSRMKRGSYLVNTARGKIVDRDAVVRAL-ES-GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQAR  344 (385)
T ss_pred             CHHHHhcCCCCcEEEECCCCchhhHHHHHHHH-Hh-CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHH
Confidence            5544   5889999999866543100   000 00 12   335663221        1111346777777765444444


Q ss_pred             HHHHHHHHHHHHh
Q 027976          201 LLSNTLDSAKRAY  213 (216)
Q Consensus       201 Ll~n~~~a~~~~~  213 (216)
                      +...++...++|+
T Consensus       345 ~~~~~~~ni~~~~  357 (385)
T PRK07574        345 YAAGTREILECFF  357 (385)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444555555554

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.02  E-value=1.7e-05  Score=70.54  Aligned_cols=81  Identities=17%  Similarity=0.310  Sum_probs=65.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCC-C---CcccCC--
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A---NLVRGS--  140 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~-p---~~i~~~--  140 (216)
                      .++.||++.|||.|.+ |+.+|..|...|++|..++++.         .++.+.+++||+|+...+. +   +++..+  
T Consensus       118 ~~L~gktvgIiG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l  196 (303)
T PRK06436        118 KLLYNKSLGILGYGGI-GRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKML  196 (303)
T ss_pred             CCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHH
Confidence            4689999999999886 9999999998999999988742         3578889999999999884 2   245543  


Q ss_pred             -cccCCcEEEEeeeCCcc
Q 027976          141 -WLKPGAVVLDVGTCPVD  157 (216)
Q Consensus       141 -~i~~g~vViDvg~~~~~  157 (216)
                       .+++|+++|+++--...
T Consensus       197 ~~mk~ga~lIN~sRG~~v  214 (303)
T PRK06436        197 SLFRKGLAIINVARADVV  214 (303)
T ss_pred             hcCCCCeEEEECCCcccc
Confidence             35889999999876543

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.01  E-value=1.8e-05  Score=70.64  Aligned_cols=80  Identities=13%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCC-CC---cccC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-AN---LVRG  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~-p~---~i~~  139 (216)
                      .+++||++.|||.|.+ |+.+|..|...|++|+..++..            .++.+.+++||+|+...+. +.   ++..
T Consensus       132 ~~l~g~tvgIvG~G~I-G~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~  210 (312)
T PRK15469        132 YHREDFTIGILGAGVL-GSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQ  210 (312)
T ss_pred             CCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHH
Confidence            4689999999999986 9999999999999998887542            2577889999999999884 32   3544


Q ss_pred             C---cccCCcEEEEeeeCCc
Q 027976          140 S---WLKPGAVVLDVGTCPV  156 (216)
Q Consensus       140 ~---~i~~g~vViDvg~~~~  156 (216)
                      +   .+++|+++|+++--..
T Consensus       211 ~~l~~mk~ga~lIN~aRG~v  230 (312)
T PRK15469        211 QLLEQLPDGAYLLNLARGVH  230 (312)
T ss_pred             HHHhcCCCCcEEEECCCccc
Confidence            3   3588999999987654

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.00  E-value=1.7e-05  Score=71.17  Aligned_cols=80  Identities=20%  Similarity=0.318  Sum_probs=64.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------CCHHhhccCCCEEEEecCCCC----cccCC-
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGVAN----LVRGS-  140 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~ADIVIsatg~p~----~i~~~-  140 (216)
                      .++.|+++.|||.|.+ |+++|..|...|++|+.++++.          .++.+.+++||+|+.+++...    .+..+ 
T Consensus       142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~  220 (330)
T PRK12480        142 KPVKNMTVAIIGTGRI-GAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAM  220 (330)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHH
Confidence            3689999999999886 9999999999999999987652          257788999999999998532    34333 


Q ss_pred             --cccCCcEEEEeeeCCc
Q 027976          141 --WLKPGAVVLDVGTCPV  156 (216)
Q Consensus       141 --~i~~g~vViDvg~~~~  156 (216)
                        .+++|+++|+++--..
T Consensus       221 l~~mk~gavlIN~aRG~~  238 (330)
T PRK12480        221 FDHVKKGAILVNAARGAV  238 (330)
T ss_pred             HhcCCCCcEEEEcCCccc
Confidence              3578999999986654

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.98  E-value=8.9e-06  Score=72.24  Aligned_cols=77  Identities=30%  Similarity=0.415  Sum_probs=63.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------CCHHhhccCCCEEEEecCC---
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAGV---  133 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~---  133 (216)
                      ....+|+|||.|- +|.-.|+++...||+|+|...+.                     .++++.+++||+||.|+=.   
T Consensus       166 V~~~kv~iiGGGv-vgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         166 VLPAKVVVLGGGV-VGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCccEEEECCcc-ccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            4566799999975 59999999999999999996651                     2567899999999988733   


Q ss_pred             --CCcccCCcc---cCCcEEEEeeeCC
Q 027976          134 --ANLVRGSWL---KPGAVVLDVGTCP  155 (216)
Q Consensus       134 --p~~i~~~~i---~~g~vViDvg~~~  155 (216)
                        |.+++.+|+   +||.++||+++..
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDVAiDq  271 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDVAIDQ  271 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEEEEcC
Confidence              556888875   7899999999875

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.96  E-value=1.8e-05  Score=72.44  Aligned_cols=112  Identities=20%  Similarity=0.216  Sum_probs=79.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC------------------------CCHHhhccCCCEEEEecCCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT------------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t------------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      ++|+|||+|+. |+++|..|++++ .+|++..|+.                        +.+.+.+++.|+||++.+...
T Consensus         2 ~~ilviGaG~V-g~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~   80 (389)
T COG1748           2 MKILVIGAGGV-GSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV   80 (389)
T ss_pred             CcEEEECCchh-HHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence            68999999885 999999999999 7899998861                        246688999999999998644


Q ss_pred             c--ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCC-cccHHHHHHHHHHHHHHH
Q 027976          136 L--VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPG-GVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       136 ~--i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpg-GvGp~T~amLl~n~~~a~  209 (216)
                      -  +-...++-|.-++|+++.+..          . +    +++..+++++... +++ |+-|=-+..+...+++-+
T Consensus        81 ~~~i~ka~i~~gv~yvDts~~~~~----------~-~----~~~~~a~~Agit~-v~~~G~dPGi~nv~a~~a~~~~  141 (389)
T COG1748          81 DLTILKACIKTGVDYVDTSYYEEP----------P-W----KLDEEAKKAGITA-VLGCGFDPGITNVLAAYAAKEL  141 (389)
T ss_pred             hHHHHHHHHHhCCCEEEcccCCch----------h-h----hhhHHHHHcCeEE-EcccCcCcchHHHHHHHHHHHh
Confidence            2  344556778999999987643          1 1    1234446677322 333 666666666666665543

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.96  E-value=3.2e-05  Score=69.48  Aligned_cols=80  Identities=23%  Similarity=0.308  Sum_probs=63.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHH-HhCCCEEEEEeCCC-----------CCHHhhccCCCEEEEecCCCC----cccC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLL-QRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGVAN----LVRG  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L-~~~ga~Vti~~~~t-----------~~l~~~~~~ADIVIsatg~p~----~i~~  139 (216)
                      .++.|++|.|||.|.+ |+.+|..| ...|++|+..++..           .++.+.+++||+|+.+++...    ++..
T Consensus       142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~  220 (332)
T PRK08605        142 RSIKDLKVAVIGTGRI-GLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA  220 (332)
T ss_pred             ceeCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH
Confidence            4689999999999886 99999998 55788988887542           367888999999999988532    3443


Q ss_pred             ---CcccCCcEEEEeeeCCc
Q 027976          140 ---SWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       140 ---~~i~~g~vViDvg~~~~  156 (216)
                         +.+++|+++||++--..
T Consensus       221 ~~l~~mk~gailIN~sRG~~  240 (332)
T PRK08605        221 DLFKHFKKGAVFVNCARGSL  240 (332)
T ss_pred             HHHhcCCCCcEEEECCCCcc
Confidence               44688999999987654

>PLN02306 hydroxypyruvate reductase

Probab=97.90  E-value=3.5e-05  Score=70.68  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=63.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHH-hCCCEEEEEeCCC----------------------------CCHHhhccCCCE
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALT----------------------------KNPEQITSEADI  126 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~-~~ga~Vti~~~~t----------------------------~~l~~~~~~ADI  126 (216)
                      .++.||++.|||.|.+ |+.+|.+|. ..|++|...++..                            .++.+.+++||+
T Consensus       161 ~~L~gktvGIiG~G~I-G~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDi  239 (386)
T PLN02306        161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADV  239 (386)
T ss_pred             cCCCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCE
Confidence            4689999999999986 999999985 8899988775421                            267888999999


Q ss_pred             EEEecCC-C---CcccCCc---ccCCcEEEEeeeCCc
Q 027976          127 VIAAAGV-A---NLVRGSW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       127 VIsatg~-p---~~i~~~~---i~~g~vViDvg~~~~  156 (216)
                      |+..++. +   ++|+.+.   +|+|+++|+++--..
T Consensus       240 V~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~l  276 (386)
T PLN02306        240 ISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPV  276 (386)
T ss_pred             EEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccc
Confidence            9988773 2   3566654   588999999996554

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.87  E-value=4.3e-05  Score=68.60  Aligned_cols=136  Identities=22%  Similarity=0.274  Sum_probs=89.4

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCC-CC---cc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-AN---LV  137 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~-p~---~i  137 (216)
                      +.++.||++-|||.|.+ |+.++..|...|++|..+++..             .+|.+.+++||+|+.-++. |.   ++
T Consensus       137 g~el~gkTvGIiG~G~I-G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i  215 (324)
T COG0111         137 GTELAGKTVGIIGLGRI-GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLI  215 (324)
T ss_pred             cccccCCEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhccc
Confidence            45788999999999986 9999999999999999998732             3588999999999988884 32   46


Q ss_pred             cCCc---ccCCcEEEEeeeCCccCCC---CCCCCCCCeEe---cccChHH-------HhhH-cceecccCCcccHHHHHH
Q 027976          138 RGSW---LKPGAVVLDVGTCPVDVSV---DPSCEYGYRLM---GDVCYEE-------AMRL-ASVITPVPGGVGPMTVAM  200 (216)
Q Consensus       138 ~~~~---i~~g~vViDvg~~~~~~~~---~~~~~~~~~l~---GDvd~~~-------~~~~-~~~~tpvpgGvGp~T~am  200 (216)
                      ..+.   +|+|+++|+++--..-+..   +.. .+ +++-   =||-.++       +.+. .-.+||=.||.---+...
T Consensus       216 ~~~~~a~MK~gailIN~aRG~vVde~aL~~AL-~~-G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~  293 (324)
T COG0111         216 NAEELAKMKPGAILINAARGGVVDEDALLAAL-DS-GKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER  293 (324)
T ss_pred             CHHHHhhCCCCeEEEECCCcceecHHHHHHHH-Hc-CCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence            6554   4789999999866542100   000 00 1111   1222111       1111 234577777776655566


Q ss_pred             HHHHHHHHHHHHh
Q 027976          201 LLSNTLDSAKRAY  213 (216)
Q Consensus       201 Ll~n~~~a~~~~~  213 (216)
                      +...+++...+|.
T Consensus       294 ~~~~~~~~i~~~l  306 (324)
T COG0111         294 VAEIVAENIVRYL  306 (324)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.87  E-value=2.6e-05  Score=62.77  Aligned_cols=75  Identities=21%  Similarity=0.330  Sum_probs=55.2

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----c-cc---
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----L-VR---  138 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~-i~---  138 (216)
                      ++|-+||.|.+ |++++..|++.|.+|++++++.              .+..+.++++|+||++++.+.    . ..   
T Consensus         2 ~~Ig~IGlG~m-G~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i   80 (163)
T PF03446_consen    2 MKIGFIGLGNM-GSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI   80 (163)
T ss_dssp             BEEEEE--SHH-HHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred             CEEEEEchHHH-HHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence            57999999886 9999999999999999999873              356788999999999998743    1 22   


Q ss_pred             CCcccCCcEEEEeeeCCc
Q 027976          139 GSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       139 ~~~i~~g~vViDvg~~~~  156 (216)
                      ...+++|.++||++....
T Consensus        81 ~~~l~~g~iiid~sT~~p   98 (163)
T PF03446_consen   81 LAGLRPGKIIIDMSTISP   98 (163)
T ss_dssp             GGGS-TTEEEEE-SS--H
T ss_pred             hhccccceEEEecCCcch
Confidence            244578999999986643

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.87  E-value=1.1e-05  Score=65.47  Aligned_cols=77  Identities=25%  Similarity=0.338  Sum_probs=55.9

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------C------------------------CCH
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------T------------------------KNP  117 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------t------------------------~~l  117 (216)
                      +...+|+|+|+|.+ |+.++..|...|++|++.+..                +                        ..+
T Consensus        18 ~~p~~vvv~G~G~v-g~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   96 (168)
T PF01262_consen   18 VPPAKVVVTGAGRV-GQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF   96 (168)
T ss_dssp             E-T-EEEEESTSHH-HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred             CCCeEEEEECCCHH-HHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence            46689999999875 999999999999999998543                1                        125


Q ss_pred             HhhccCCCEEEEecC-----CCCcccCCcc---cCCcEEEEeeeCC
Q 027976          118 EQITSEADIVIAAAG-----VANLVRGSWL---KPGAVVLDVGTCP  155 (216)
Q Consensus       118 ~~~~~~ADIVIsatg-----~p~~i~~~~i---~~g~vViDvg~~~  155 (216)
                      .+.++.+|+||++.-     .|.+++.+++   +++.+|+|++...
T Consensus        97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~  142 (168)
T PF01262_consen   97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ  142 (168)
T ss_dssp             HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred             HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence            578899999996542     3556888775   6899999999853

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.87  E-value=2e-05  Score=63.51  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=70.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-CCH--------------HhhccCCCEEEEecCCCCc--cc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP--------------EQITSEADIVIAAAGVANL--VR  138 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l--------------~~~~~~ADIVIsatg~p~~--i~  138 (216)
                      ++++|++|+|||+|.. |.-.+..|.+.|++|+++...- +++              .+.+.++|+||.||+.+..  .-
T Consensus         9 l~l~~~~vlVvGGG~v-a~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i   87 (157)
T PRK06719          9 FNLHNKVVVIIGGGKI-AYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMV   87 (157)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHH
Confidence            5789999999999885 9999999999999999985331 111              2347889999999987652  11


Q ss_pred             CCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhh---HcceecccCCcccHHHHHHHHHHHHHH
Q 027976          139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNTLDS  208 (216)
Q Consensus       139 ~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~---~~~~~tpvpgGvGp~T~amLl~n~~~a  208 (216)
                      ...-+... .+++.-+|..              +|+-+...-+   ..-.++  -+|-+|.....|=++.-..
T Consensus        88 ~~~a~~~~-~vn~~d~~~~--------------~~f~~pa~v~~~~l~iais--T~G~sP~la~~lr~~ie~~  143 (157)
T PRK06719         88 KQAAHDFQ-WVNVVSDGTE--------------SSFHTPGVIRNDEYVVTIS--TSGKDPSFTKRLKQELTSI  143 (157)
T ss_pred             HHHHHHCC-cEEECCCCCc--------------CcEEeeeEEEECCeEEEEE--CCCcChHHHHHHHHHHHHH
Confidence            11112333 3444433322              2222222111   123444  5788998888876555443

>PLN03139 formate dehydrogenase; Provisional

Probab=97.87  E-value=4e-05  Score=70.32  Aligned_cols=136  Identities=15%  Similarity=0.216  Sum_probs=88.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----cc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV  137 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i  137 (216)
                      .++.||++.|||.|.+ |+.+|..|...|++|..+++..              .++.+.+++||+|+...+...    ++
T Consensus       195 ~~L~gktVGIVG~G~I-G~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li  273 (386)
T PLN03139        195 YDLEGKTVGTVGAGRI-GRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF  273 (386)
T ss_pred             cCCCCCEEEEEeecHH-HHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh
Confidence            4689999999999886 9999999999999998887641              267888999999999888422    45


Q ss_pred             cCCc---ccCCcEEEEeeeCCccCCCCC--CCCCCCeE---ecccChHHH--------hhHcceecccCCcccHHHHHHH
Q 027976          138 RGSW---LKPGAVVLDVGTCPVDVSVDP--SCEYGYRL---MGDVCYEEA--------MRLASVITPVPGGVGPMTVAML  201 (216)
Q Consensus       138 ~~~~---i~~g~vViDvg~~~~~~~~~~--~~~~~~~l---~GDvd~~~~--------~~~~~~~tpvpgGvGp~T~amL  201 (216)
                      ..+.   +++|+++||++--...++. .  .....+++   ..||-+++=        .-..-.+||=.+|.-.-+...+
T Consensus       274 ~~~~l~~mk~ga~lIN~aRG~iVDe~-AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~  352 (386)
T PLN03139        274 NKERIAKMKKGVLIVNNARGAIMDTQ-AVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRY  352 (386)
T ss_pred             CHHHHhhCCCCeEEEECCCCchhhHH-HHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHH
Confidence            5544   5789999999876543100 0  00000133   456643221        1123467777677554445444


Q ss_pred             HHHHHHHHHHHh
Q 027976          202 LSNTLDSAKRAY  213 (216)
Q Consensus       202 l~n~~~a~~~~~  213 (216)
                      ...++...++|+
T Consensus       353 ~~~~~~nl~~~~  364 (386)
T PLN03139        353 AAGVKDMLDRYF  364 (386)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555654

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.86  E-value=4.7e-05  Score=68.25  Aligned_cols=136  Identities=17%  Similarity=0.174  Sum_probs=86.6

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHH-hCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCC-C---Ccc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLV  137 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~-~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~-p---~~i  137 (216)
                      +.++.||++.|||.|.+ |+.+|..|. ..|++|...++..            .++.+.+++||+|+...+. |   +++
T Consensus       140 g~~L~gktvGIiG~G~I-G~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li  218 (323)
T PRK15409        140 GTDVHHKTLGIVGMGRI-GMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLF  218 (323)
T ss_pred             cCCCCCCEEEEEcccHH-HHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhcc
Confidence            34689999999999986 999999997 8899988776542            2578899999999988883 3   356


Q ss_pred             cCCc---ccCCcEEEEeeeCCccCCC---CCCCCCCCeEec---ccChHH-------H-hhHcceecccCCcccHHHHHH
Q 027976          138 RGSW---LKPGAVVLDVGTCPVDVSV---DPSCEYGYRLMG---DVCYEE-------A-MRLASVITPVPGGVGPMTVAM  200 (216)
Q Consensus       138 ~~~~---i~~g~vViDvg~~~~~~~~---~~~~~~~~~l~G---Dvd~~~-------~-~~~~~~~tpvpgGvGp~T~am  200 (216)
                      ..+.   +|+++++|+++--...++.   +..  ..+++.|   ||-..+       + .-..-.+||=.||.-.=+..-
T Consensus       219 ~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL--~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~  296 (323)
T PRK15409        219 GAEQFAKMKSSAIFINAGRGPVVDENALIAAL--QKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN  296 (323)
T ss_pred             CHHHHhcCCCCeEEEECCCccccCHHHHHHHH--HcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence            6654   4789999999866543100   000  0123433   442111       1 112336677767755444444


Q ss_pred             HHHHHHHHHHHHh
Q 027976          201 LLSNTLDSAKRAY  213 (216)
Q Consensus       201 Ll~n~~~a~~~~~  213 (216)
                      +..+.+...++|+
T Consensus       297 ~~~~~~~ni~~~~  309 (323)
T PRK15409        297 MAACAVDNLIDAL  309 (323)
T ss_pred             HHHHHHHHHHHHH
Confidence            4555555555554

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.81  E-value=2.8e-05  Score=58.11  Aligned_cols=59  Identities=24%  Similarity=0.356  Sum_probs=45.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------CCHHhhccCCCEEEEecCCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      ++++|++|+|||.|.. |..-+..|++.||+|+++....           +.+++.+..+|+||.|++.+.
T Consensus         3 l~l~~~~vlVvGgG~v-a~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~   72 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPV-AARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPE   72 (103)
T ss_dssp             E--TT-EEEEEEESHH-HHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HH
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHH
Confidence            4689999999999885 9888999999999999997661           345577888999999998765

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.77  E-value=7.6e-05  Score=68.93  Aligned_cols=79  Identities=22%  Similarity=0.348  Sum_probs=64.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------CCHHhhccCCCEEEEecCC-C---CcccCCc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV-A---NLVRGSW  141 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~ADIVIsatg~-p---~~i~~~~  141 (216)
                      .++.||++.|||.|.+ |+.+|..|...|++|..+++..          .++.+.+++||+|+...+. +   +++..+.
T Consensus       147 ~~L~gktvGIiG~G~I-G~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~  225 (409)
T PRK11790        147 FEVRGKTLGIVGYGHI-GTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEE  225 (409)
T ss_pred             ccCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHH
Confidence            5689999999999986 9999999999999998887542          2688999999999988874 3   2566544


Q ss_pred             ---ccCCcEEEEeeeCC
Q 027976          142 ---LKPGAVVLDVGTCP  155 (216)
Q Consensus       142 ---i~~g~vViDvg~~~  155 (216)
                         +|+|+++|+++--.
T Consensus       226 l~~mk~ga~lIN~aRG~  242 (409)
T PRK11790        226 LALMKPGAILINASRGT  242 (409)
T ss_pred             HhcCCCCeEEEECCCCc
Confidence               57899999998544

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.76  E-value=0.0001  Score=69.81  Aligned_cols=90  Identities=23%  Similarity=0.315  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhCC----------CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------
Q 027976           65 KGCIELLIRSGV----------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------  115 (216)
Q Consensus        65 ~g~~~~L~~~~~----------~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------  115 (216)
                      .++++..++++.          ...+.+|+|+|+|.+ |..++..+...||+|+++.++..                   
T Consensus       140 ~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~i-GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e  218 (509)
T PRK09424        140 RAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEE  218 (509)
T ss_pred             HHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEecccc
Confidence            556666665543          246999999999886 99999999999999888855410                   


Q ss_pred             --------------C--------HHhhccCCCEEEEecCCCC-----cccCCc---ccCCcEEEEeeeCC
Q 027976          116 --------------N--------PEQITSEADIVIAAAGVAN-----LVRGSW---LKPGAVVLDVGTCP  155 (216)
Q Consensus       116 --------------~--------l~~~~~~ADIVIsatg~p~-----~i~~~~---i~~g~vViDvg~~~  155 (216)
                                    +        +.+.++.+|+||+++|.|.     .++.++   +++|.+|+|++..+
T Consensus       219 ~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~  288 (509)
T PRK09424        219 EGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAEN  288 (509)
T ss_pred             ccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCC
Confidence                          1        0122367999999999754     445555   47899999999853

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.74  E-value=9.4e-05  Score=70.39  Aligned_cols=81  Identities=19%  Similarity=0.310  Sum_probs=65.5

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCC----Ccc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVA----NLV  137 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p----~~i  137 (216)
                      +.++.||++.|||.|.+ |+.+|..|...|++|..+++..             .++.+.+++||+|+..++..    +++
T Consensus       133 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li  211 (525)
T TIGR01327       133 GTELYGKTLGVIGLGRI-GSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI  211 (525)
T ss_pred             ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc
Confidence            35689999999999986 9999999999999999887631             26888999999999988842    245


Q ss_pred             cCCc---ccCCcEEEEeeeCCc
Q 027976          138 RGSW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       138 ~~~~---i~~g~vViDvg~~~~  156 (216)
                      ..+.   +|+++++||++-...
T Consensus       212 ~~~~l~~mk~ga~lIN~aRG~~  233 (525)
T TIGR01327       212 GAEELAKMKKGVIIVNCARGGI  233 (525)
T ss_pred             CHHHHhcCCCCeEEEEcCCCce
Confidence            4433   578999999987654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.74  E-value=8.9e-05  Score=70.55  Aligned_cols=80  Identities=19%  Similarity=0.307  Sum_probs=64.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCCC----CcccC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA----NLVRG  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~p----~~i~~  139 (216)
                      .++.||++.|||.|.+ |+.+|..|...|++|..+++..            .++.+.+++||+|+..++..    +++..
T Consensus       136 ~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~  214 (526)
T PRK13581        136 VELYGKTLGIIGLGRI-GSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGA  214 (526)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCH
Confidence            4589999999999886 9999999999999999887631            15678899999999999853    24654


Q ss_pred             Cc---ccCCcEEEEeeeCCc
Q 027976          140 SW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       140 ~~---i~~g~vViDvg~~~~  156 (216)
                      +.   +|+++++||++-...
T Consensus       215 ~~l~~mk~ga~lIN~aRG~~  234 (526)
T PRK13581        215 EELAKMKPGVRIINCARGGI  234 (526)
T ss_pred             HHHhcCCCCeEEEECCCCce
Confidence            43   578999999987654

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.69  E-value=0.00012  Score=64.67  Aligned_cols=73  Identities=15%  Similarity=0.263  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-CCHHhhccCCCEEEEecCCCCc------ccCCcccCCcEEEEe
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNPEQITSEADIVIAAAGVANL------VRGSWLKPGAVVLDV  151 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l~~~~~~ADIVIsatg~p~~------i~~~~i~~g~vViDv  151 (216)
                      .+++|.|||.|.. |.+++..|.+.|.+|++.+|+. .++.+.+++||+||.+++....      +.+..++++.+++|+
T Consensus         3 ~~m~I~iiG~G~~-G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~   81 (308)
T PRK14619          3 QPKTIAILGAGAW-GSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA   81 (308)
T ss_pred             CCCEEEEECccHH-HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence            4678999999875 9999999999999999998864 5678889999999999987431      112235678899997


Q ss_pred             e
Q 027976          152 G  152 (216)
Q Consensus       152 g  152 (216)
                      .
T Consensus        82 s   82 (308)
T PRK14619         82 T   82 (308)
T ss_pred             C
Confidence            5

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.65  E-value=0.00014  Score=65.37  Aligned_cols=80  Identities=20%  Similarity=0.351  Sum_probs=65.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------CHHhhccCCCEEEEecCC-C---CcccC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV-A---NLVRG  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~ADIVIsatg~-p---~~i~~  139 (216)
                      .+++||++-|||.|.+ |+++|+.+...|++|...++..+            ++.+.+++||+|+-..|. +   ++|..
T Consensus       142 ~~l~gktvGIiG~GrI-G~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~  220 (324)
T COG1052         142 FDLRGKTLGIIGLGRI-GQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINA  220 (324)
T ss_pred             cCCCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCH
Confidence            5789999999999997 99999999988999988876631            377999999999988773 3   35766


Q ss_pred             Cc---ccCCcEEEEeeeCCc
Q 027976          140 SW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       140 ~~---i~~g~vViDvg~~~~  156 (216)
                      +.   +|+++++|+++--..
T Consensus       221 ~~l~~mk~ga~lVNtaRG~~  240 (324)
T COG1052         221 EELAKMKPGAILVNTARGGL  240 (324)
T ss_pred             HHHHhCCCCeEEEECCCccc
Confidence            54   578999999986654

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.63  E-value=0.00018  Score=63.43  Aligned_cols=74  Identities=28%  Similarity=0.415  Sum_probs=59.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------CHHhhccCCCEEEEecCCCC-----cccCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGVAN-----LVRGS  140 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~~ADIVIsatg~p~-----~i~~~  140 (216)
                      .+|..||-|.+ |.|+|..|.+.|.+|++++|+..               +..+..++||+||+.++.+.     ++.++
T Consensus         1 ~kIafIGLG~M-G~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~   79 (286)
T COG2084           1 MKIAFIGLGIM-GSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGEN   79 (286)
T ss_pred             CeEEEEcCchh-hHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCcc
Confidence            36889999986 99999999999999999999832               34578999999999998654     12223


Q ss_pred             ----cccCCcEEEEeeeCC
Q 027976          141 ----WLKPGAVVLDVGTCP  155 (216)
Q Consensus       141 ----~i~~g~vViDvg~~~  155 (216)
                          ..++|.++||++...
T Consensus        80 g~~~~~~~G~i~IDmSTis   98 (286)
T COG2084          80 GLLEGLKPGAIVIDMSTIS   98 (286)
T ss_pred             chhhcCCCCCEEEECCCCC
Confidence                346899999998764

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.61  E-value=0.0001  Score=61.91  Aligned_cols=59  Identities=22%  Similarity=0.339  Sum_probs=47.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-CH-----------------HhhccCCCEEEEecCCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-NP-----------------EQITSEADIVIAAAGVAN  135 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-~l-----------------~~~~~~ADIVIsatg~p~  135 (216)
                      ++++||+|+|||.|.. |..-+..|++.||.|+++..... .+                 .+.+..+|+||.||+.+.
T Consensus         5 l~l~gk~vlVvGgG~v-a~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~   81 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDV-ALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE   81 (205)
T ss_pred             EEcCCCeEEEECcCHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH
Confidence            4689999999999885 99889999999999999965421 11                 244778999999999763

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.60  E-value=0.00012  Score=58.57  Aligned_cols=70  Identities=26%  Similarity=0.359  Sum_probs=51.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------------CCCHHhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------TKNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------t~~l~~~~~~ADIVIsatg~  133 (216)
                      ||+|+|+|.. |.++|..|+.+|.+|++..++                            +.++++.+++||+||-++++
T Consensus         1 KI~ViGaG~~-G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs   79 (157)
T PF01210_consen    1 KIAVIGAGNW-GTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS   79 (157)
T ss_dssp             EEEEESSSHH-HHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH
Confidence            6899999987 999999999999999999654                            24788999999999999986


Q ss_pred             CCc---c--cCCcccCCcEEEEee
Q 027976          134 ANL---V--RGSWLKPGAVVLDVG  152 (216)
Q Consensus       134 p~~---i--~~~~i~~g~vViDvg  152 (216)
                      ...   +  -..+++++..++-+.
T Consensus        80 ~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   80 QAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             GGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             HHHHHHHHHHhhccCCCCEEEEec
Confidence            431   1  123456777776543

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.58  E-value=0.00018  Score=65.68  Aligned_cols=74  Identities=18%  Similarity=0.294  Sum_probs=58.6

Q ss_pred             CCCeEEEEc-CCchhHHHHHHHHHhCCCEEEEEeCCC-CCHHhhccCCCEEEEecCCCC---ccc--CCcccCCcEEEEe
Q 027976           79 MGKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALT-KNPEQITSEADIVIAAAGVAN---LVR--GSWLKPGAVVLDV  151 (216)
Q Consensus        79 ~gk~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l~~~~~~ADIVIsatg~p~---~i~--~~~i~~g~vViDv  151 (216)
                      ..+++.||| .|. +|..++..|.+.|.+|+++++.. .+..+.+++||+||.|++...   .+.  .. ++++++|+|+
T Consensus        97 ~~~~I~IiGG~Gl-mG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv  174 (374)
T PRK11199         97 DLRPVVIVGGKGQ-LGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDL  174 (374)
T ss_pred             ccceEEEEcCCCh-hhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEEC
Confidence            457899999 666 59999999999999999998754 356677899999999998543   121  12 6789999999


Q ss_pred             eeC
Q 027976          152 GTC  154 (216)
Q Consensus       152 g~~  154 (216)
                      +..
T Consensus       175 ~Sv  177 (374)
T PRK11199        175 TSV  177 (374)
T ss_pred             CCc
Confidence            874

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.57  E-value=0.00024  Score=63.66  Aligned_cols=75  Identities=17%  Similarity=0.298  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHh-CC-CEEEEEeCCC--------------------CCHHhhccCCCEEEEecCCCCc
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVANL  136 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~-~g-a~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~p~~  136 (216)
                      .-+++.|||+|.. |+.-+..|.. .. .+|.+++++.                    .+.++.+++|||||++|++..+
T Consensus       127 ~~~~lgiiG~G~q-A~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P  205 (325)
T TIGR02371       127 DSSVLGIIGAGRQ-AWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKP  205 (325)
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCc
Confidence            4588999999986 9876555543 22 4699987752                    2456889999999999997766


Q ss_pred             -ccCCcccCCcEEEEeeeC
Q 027976          137 -VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       137 -i~~~~i~~g~vViDvg~~  154 (216)
                       +..+|+++|+.|.-+|.+
T Consensus       206 ~~~~~~l~~g~~v~~vGs~  224 (325)
T TIGR02371       206 VVKADWVSEGTHINAIGAD  224 (325)
T ss_pred             EecHHHcCCCCEEEecCCC
Confidence             789999999999999864

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.55  E-value=0.00022  Score=62.68  Aligned_cols=92  Identities=13%  Similarity=0.274  Sum_probs=75.0

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhC----CC-------EEEEEeCC------------------
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HA-------TVSIVHAL------------------  113 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----ga-------~Vti~~~~------------------  113 (216)
                      +-.|++..++-.+.++++.+++++|+|.+ |..++.+|...    |.       ++++++++                  
T Consensus         8 ~lAgllnAlk~~g~~l~d~~iv~~GAGsA-g~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a   86 (279)
T cd05312           8 ALAGLLAALRITGKPLSDQRILFLGAGSA-GIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFA   86 (279)
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHH
Confidence            44678999999999999999999999988 99999988765    76       68888654                  


Q ss_pred             --C-----CCHHhhcc--CCCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976          114 --T-----KNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  156 (216)
Q Consensus       114 --t-----~~l~~~~~--~ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~  156 (216)
                        +     .+|.+.++  ++|++|-.++.++.+++++++      +.-+|+=++ ||.
T Consensus        87 ~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  143 (279)
T cd05312          87 RKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS-NPT  143 (279)
T ss_pred             hhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC-CcC
Confidence              1     25788888  899999998888889998885      356787777 554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.53  E-value=0.00033  Score=62.61  Aligned_cols=76  Identities=9%  Similarity=0.160  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhC-C-CEEEEEeCCC--------------------CCHHhhccCCCEEEEecCCCCc
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRH-H-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVANL  136 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~-g-a~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~p~~  136 (216)
                      .-+++.|+|+|.- |+.-+.++..- . -+|++.+|+.                    .+.++.+++||||+++|++..+
T Consensus       127 d~~~l~iiG~G~q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P  205 (315)
T PRK06823        127 HVSAIGIVGTGIQ-ARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREP  205 (315)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCc
Confidence            4688999999875 88766665542 3 3699987762                    2467889999999999998776


Q ss_pred             -ccCCcccCCcEEEEeeeCC
Q 027976          137 -VRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       137 -i~~~~i~~g~vViDvg~~~  155 (216)
                       ++.+|++||+.|.=+|.+.
T Consensus       206 ~~~~~~l~~G~hi~~iGs~~  225 (315)
T PRK06823        206 LLQAEDIQPGTHITAVGADS  225 (315)
T ss_pred             eeCHHHcCCCcEEEecCCCC
Confidence             7899999999999998643

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=97.48  E-value=0.00023  Score=61.79  Aligned_cols=92  Identities=14%  Similarity=0.191  Sum_probs=74.5

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-----------EEEEEeCC------------------
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-----------TVSIVHAL------------------  113 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-----------~Vti~~~~------------------  113 (216)
                      +-.|++..++-.+.++++.+++++|+|-+ |..++.+|...+.           ++++++++                  
T Consensus         8 ~lAgllnAlk~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~   86 (254)
T cd00762           8 AVAGLLAALKVTKKKISEHKVLFNGAGAA-ALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLA   86 (254)
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHH
Confidence            44678899999999999999999999988 9999998877543           58888654                  


Q ss_pred             --------CCCHHhhcc--CCCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976          114 --------TKNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  156 (216)
Q Consensus       114 --------t~~l~~~~~--~ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~  156 (216)
                              ..+|.+.++  ++|++|-.++.|+.+++|+++      +.-+|+=++ ||.
T Consensus        87 ~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  144 (254)
T cd00762          87 RFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS-NPT  144 (254)
T ss_pred             HHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC-CcC
Confidence                    025788888  899999999988889999885      356777777 554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.46  E-value=0.00014  Score=52.82  Aligned_cols=70  Identities=29%  Similarity=0.340  Sum_probs=51.7

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCC---CEEEEE-eCCC---------------C-CHHhhccCCCEEEEecCCCCc--ccC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHH---ATVSIV-HALT---------------K-NPEQITSEADIVIAAAGVANL--VRG  139 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~-~~~t---------------~-~l~~~~~~ADIVIsatg~p~~--i~~  139 (216)
                      ++.+||.|.+ |.+++..|.+.|   .+|+++ +|+.               . +..+.+++||+||-++.-..+  +-.
T Consensus         1 kI~iIG~G~m-g~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~   79 (96)
T PF03807_consen    1 KIGIIGAGNM-GSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS   79 (96)
T ss_dssp             EEEEESTSHH-HHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred             CEEEECCCHH-HHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence            5789999986 999999999999   789855 6652               1 456788899999999985542  222


Q ss_pred             --CcccCCcEEEEee
Q 027976          140 --SWLKPGAVVLDVG  152 (216)
Q Consensus       140 --~~i~~g~vViDvg  152 (216)
                        ....++.++||+.
T Consensus        80 ~i~~~~~~~~vis~~   94 (96)
T PF03807_consen   80 EIPHLLKGKLVISIA   94 (96)
T ss_dssp             HHHHHHTTSEEEEES
T ss_pred             HHhhccCCCEEEEeC
Confidence              2356788898875

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06046 alanine dehydrogenase; Validated

Probab=97.46  E-value=0.0004  Score=62.14  Aligned_cols=74  Identities=20%  Similarity=0.327  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC---------------------CCHHhhccCCCEEEEecCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      .-+++.|||+|.. |+..+..|.. .+. .|.+++++.                     .++++.++ +|+|+++|+...
T Consensus       128 ~~~~vgiiG~G~q-a~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~  205 (326)
T PRK06046        128 DSKVVGIIGAGNQ-ARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK  205 (326)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC
Confidence            4578999999997 9988887764 455 488887652                     13455665 999999999766


Q ss_pred             c-ccCCcccCCcEEEEeeeC
Q 027976          136 L-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       136 ~-i~~~~i~~g~vViDvg~~  154 (216)
                      + +..+|+++|+.|.-+|.+
T Consensus       206 P~~~~~~l~~g~hV~~iGs~  225 (326)
T PRK06046        206 PVVKAEWIKEGTHINAIGAD  225 (326)
T ss_pred             cEecHHHcCCCCEEEecCCC
Confidence            6 789999999999999864

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.44  E-value=0.00047  Score=61.23  Aligned_cols=76  Identities=13%  Similarity=0.051  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC---------------------CCHHhhccCCCEEEEecCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      .-+++.|||+|.- |+.-+.++.. +.. +|.+.+|+.                     .+.++.+++||||+++|++..
T Consensus       116 da~~l~iiGaG~Q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~  194 (301)
T PRK06407        116 NVENFTIIGSGFQ-AETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT  194 (301)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence            4689999999876 8876666654 343 588887762                     246788999999999999877


Q ss_pred             c-ccCCcccCCcEEEEeeeCC
Q 027976          136 L-VRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       136 ~-i~~~~i~~g~vViDvg~~~  155 (216)
                      + ++.+|++||+.|.=+|.+.
T Consensus       195 P~~~~~~l~pg~hV~aiGs~~  215 (301)
T PRK06407        195 PIFNRKYLGDEYHVNLAGSNY  215 (301)
T ss_pred             cEecHHHcCCCceEEecCCCC
Confidence            6 7999999999998888654

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=97.41  E-value=0.00022  Score=61.94  Aligned_cols=92  Identities=14%  Similarity=0.244  Sum_probs=71.2

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhC----CC-------EEEEEeCC------------------
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HA-------TVSIVHAL------------------  113 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----ga-------~Vti~~~~------------------  113 (216)
                      |-.|++..++-.+.+|++.+++++|+|-+ |-.++.+|...    |.       ++++++++                  
T Consensus         8 ~lAgll~Al~~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a   86 (255)
T PF03949_consen    8 VLAGLLNALRVTGKKLSDQRIVFFGAGSA-GIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFA   86 (255)
T ss_dssp             HHHHHHHHHHHHTS-GGG-EEEEEB-SHH-HHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEeCCChh-HHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhh
Confidence            34678999999999999999999999987 99999888776    86       39999765                  


Q ss_pred             -----C---CCHHhhccCC--CEEEEecCCCCcccCCcccC------CcEEEEeeeCCc
Q 027976          114 -----T---KNPEQITSEA--DIVIAAAGVANLVRGSWLKP------GAVVLDVGTCPV  156 (216)
Q Consensus       114 -----t---~~l~~~~~~A--DIVIsatg~p~~i~~~~i~~------g~vViDvg~~~~  156 (216)
                           .   .+|.+.++.+  |++|..++.|+.+++|+++.      .-+|+=++ ||.
T Consensus        87 ~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS-NPt  144 (255)
T PF03949_consen   87 RKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS-NPT  144 (255)
T ss_dssp             BSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S-SSC
T ss_pred             ccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC-CCC
Confidence                 0   2688999998  99999999999899998853      45777777 554

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.40  E-value=0.00037  Score=56.63  Aligned_cols=55  Identities=22%  Similarity=0.232  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------CHHhhccCCCEEEEecCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~~ADIVIsatg~  133 (216)
                      |++|+|.|||.|.- |++-|..|.+.|.+|++..+...              +..+.+++||+|+..++-
T Consensus         2 l~~k~IAViGyGsQ-G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD   70 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQ-GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPD   70 (165)
T ss_dssp             HCTSEEEEES-SHH-HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-H
T ss_pred             cCCCEEEEECCChH-HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCCh
Confidence            58999999999987 99999999999999999987642              467999999999999873

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK12862 malic enzyme; Reviewed

Probab=97.39  E-value=0.00047  Score=68.30  Aligned_cols=92  Identities=14%  Similarity=0.208  Sum_probs=76.8

Q ss_pred             CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCC-----------------------CC
Q 027976           62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL-----------------------TK  115 (216)
Q Consensus        62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~-----------------------t~  115 (216)
                      .+..|++..++-.+.+++..++++.|+|-+ |.+++.+|...|.   ++++|+++                       ..
T Consensus       175 v~la~l~~a~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~  253 (763)
T PRK12862        175 IVAAALLNGLKLVGKDIEDVKLVASGAGAA-ALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDAR  253 (763)
T ss_pred             HHHHHHHHHHHHhCCChhhcEEEEEChhHH-HHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccC
Confidence            355778889999999999999999999988 9999999999997   68899643                       12


Q ss_pred             CHHhhccCCCEEEEecCCCCcccCCcccC---CcEEEEeeeCCc
Q 027976          116 NPEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV  156 (216)
Q Consensus       116 ~l~~~~~~ADIVIsatg~p~~i~~~~i~~---g~vViDvg~~~~  156 (216)
                      +|.+.++.+|++|-.++ |+.++++|++.   .-+|+=++ ||.
T Consensus       254 ~l~e~~~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~  295 (763)
T PRK12862        254 TLAEVIEGADVFLGLSA-AGVLKPEMVKKMAPRPLIFALA-NPT  295 (763)
T ss_pred             CHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEeCC-CCc
Confidence            57899999999998777 88899999864   67888777 554

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.37  E-value=0.00067  Score=63.35  Aligned_cols=134  Identities=19%  Similarity=0.154  Sum_probs=73.9

Q ss_pred             HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----CHHhhccCCCEEEEecCCCCcccCCcccCCc
Q 027976           71 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----NPEQITSEADIVIAAAGVANLVRGSWLKPGA  146 (216)
Q Consensus        71 L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~  146 (216)
                      |.+++.++++++|+|+|.|++ |+.+|..|+++|++|+++++...    .+.+.+++..+-+- +|....   .....+.
T Consensus         7 ~~~~~~~~~~~~v~viG~G~~-G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~-~~~~~~---~~~~~D~   81 (480)
T PRK01438          7 LTSWHSDWQGLRVVVAGLGVS-GFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVR-LGPGPT---LPEDTDL   81 (480)
T ss_pred             hhhcccCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEE-ECCCcc---ccCCCCE
Confidence            456777889999999999997 99999999999999999986532    12223333332221 110000   0112334


Q ss_pred             EEEEeeeCCccCCCCCCCCCCCeEecccChH-HHhhH-c-ceecccCCcccHHHHHHHHHHHHHHH
Q 027976          147 VVLDVGTCPVDVSVDPSCEYGYRLMGDVCYE-EAMRL-A-SVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       147 vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~-~~~~~-~-~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      +|+-.|++|...........+-++.++.++- ...+. . ..+.-|-|=-|.=|+.-|+.+++...
T Consensus        82 Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         82 VVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             EEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence            4444555443200000001123566666642 11111 0 01112457789999999999888653

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.36  E-value=0.00034  Score=59.11  Aligned_cols=116  Identities=21%  Similarity=0.278  Sum_probs=72.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------------CCHHhhccCCCEEEEecCCCCcc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSEADIVIAAAGVANLV  137 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~~~ADIVIsatg~p~~i  137 (216)
                      .+++||+|+|||.|.. |.-=+..|++.|++|++.....                  .-..+.+..+++||.||+.+.. 
T Consensus         8 ~~l~~k~VlvvGgG~v-a~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~l-   85 (210)
T COG1648           8 LDLEGKKVLVVGGGSV-ALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEEL-   85 (210)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHH-
Confidence            4689999999999885 8888899999999999884431                  1113455669999999987642 


Q ss_pred             cCCcc---cCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhH---cceecccCCcccHHHHHHHHHHHHHHH
Q 027976          138 RGSWL---KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRL---ASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       138 ~~~~i---~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~---~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      .....   ++-.+.+++.-.|..              +|+-|...-++   .-.++  -||-+|+.+.|+.++.-...
T Consensus        86 n~~i~~~a~~~~i~vNv~D~p~~--------------~~f~~Pa~~~r~~l~iaIs--T~G~sP~la~~ir~~Ie~~l  147 (210)
T COG1648          86 NERIAKAARERRILVNVVDDPEL--------------CDFIFPAIVDRGPLQIAIS--TGGKSPVLARLLREKIEALL  147 (210)
T ss_pred             HHHHHHHHHHhCCceeccCCccc--------------CceecceeeccCCeEEEEE--CCCCChHHHHHHHHHHHHHc
Confidence            11111   122334444433321              23333332222   23344  57889999998877665443

>PLN02256 arogenate dehydrogenase

Probab=97.35  E-value=0.001  Score=59.22  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=57.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhc-cCCCEEEEecCCCC---ccc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQIT-SEADIVIAAAGVAN---LVR  138 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~-~~ADIVIsatg~p~---~i~  138 (216)
                      .+-+++++.|||.|.+ |..++..|.+.|.+|+++++...             +..+.+ .++|+||.+++...   .+.
T Consensus        32 ~~~~~~kI~IIG~G~m-G~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~  110 (304)
T PLN02256         32 EKSRKLKIGIVGFGNF-GQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLR  110 (304)
T ss_pred             ccCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHH
Confidence            3457889999999876 99999999999988888876531             233444 46999999998432   122


Q ss_pred             ---CCcccCCcEEEEeee
Q 027976          139 ---GSWLKPGAVVLDVGT  153 (216)
Q Consensus       139 ---~~~i~~g~vViDvg~  153 (216)
                         ...++++++|+|++.
T Consensus       111 ~l~~~~l~~~~iviDv~S  128 (304)
T PLN02256        111 SLPLQRLKRSTLFVDVLS  128 (304)
T ss_pred             hhhhhccCCCCEEEecCC
Confidence               233678999999997

>PLN02712 arogenate dehydrogenase

Probab=97.34  E-value=0.00056  Score=66.97  Aligned_cols=80  Identities=11%  Similarity=0.156  Sum_probs=60.2

Q ss_pred             hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhcc-CCCEEEEecCCCC---c
Q 027976           74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITS-EADIVIAAAGVAN---L  136 (216)
Q Consensus        74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~-~ADIVIsatg~p~---~  136 (216)
                      .+.++++++|.|||.|.+ |..++..|.+.|.+|+++++...             ++.+.+. ++|+||.+++...   .
T Consensus       363 ~~~~~~~~kIgIIGlG~m-G~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v  441 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNF-GQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV  441 (667)
T ss_pred             ccCCCCCCEEEEEecCHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence            445678999999999886 99999999999999998887632             2334454 5899999998432   1


Q ss_pred             c---cCCcccCCcEEEEeeeC
Q 027976          137 V---RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       137 i---~~~~i~~g~vViDvg~~  154 (216)
                      +   ....++++++|+|++..
T Consensus       442 i~~l~~~~lk~g~ivvDv~Sv  462 (667)
T PLN02712        442 LKSLPFQRLKRSTLFVDVLSV  462 (667)
T ss_pred             HHHHHHhcCCCCcEEEECCCc
Confidence            2   22246789999999764

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.33  E-value=0.00058  Score=59.72  Aligned_cols=72  Identities=19%  Similarity=0.309  Sum_probs=55.7

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----cc-cC---
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-RG---  139 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i-~~---  139 (216)
                      +|.|||.|.+ |.+++..|++.|.+|++++++.              .+..+.++++|+||.+++...    .+ ..   
T Consensus         1 ~IgvIG~G~m-G~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~   79 (291)
T TIGR01505         1 KVGFIGLGIM-GSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGI   79 (291)
T ss_pred             CEEEEEecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchH
Confidence            4789999876 9999999999999999998762              245678899999999998542    11 11   


Q ss_pred             -CcccCCcEEEEeeeC
Q 027976          140 -SWLKPGAVVLDVGTC  154 (216)
Q Consensus       140 -~~i~~g~vViDvg~~  154 (216)
                       ..++++.+++|++..
T Consensus        80 ~~~~~~g~iivd~st~   95 (291)
T TIGR01505        80 IEGAKPGKTLVDMSSI   95 (291)
T ss_pred             hhcCCCCCEEEECCCC
Confidence             234778999998654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.32  E-value=0.00076  Score=59.01  Aligned_cols=74  Identities=19%  Similarity=0.271  Sum_probs=57.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----cc-c---
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-R---  138 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i-~---  138 (216)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .+..+.++++|+||.+++.+.    .+ .   
T Consensus         3 ~~IgviG~G~m-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~   81 (296)
T PRK11559          3 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENG   81 (296)
T ss_pred             ceEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcch
Confidence            47999999876 9999999999999999988752              245677889999999998433    12 1   


Q ss_pred             -CCcccCCcEEEEeeeCC
Q 027976          139 -GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       139 -~~~i~~g~vViDvg~~~  155 (216)
                       ...++++.+++|++...
T Consensus        82 ~~~~~~~g~iiid~st~~   99 (296)
T PRK11559         82 IIEGAKPGTVVIDMSSIA   99 (296)
T ss_pred             HhhcCCCCcEEEECCCCC
Confidence             12357889999997654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.31  E-value=0.00066  Score=59.76  Aligned_cols=74  Identities=26%  Similarity=0.340  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------CH-HhhccCCCEEEEecCCCC---cc
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NP-EQITSEADIVIAAAGVAN---LV  137 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l-~~~~~~ADIVIsatg~p~---~i  137 (216)
                      -++|+|+|.|.+ |+.+++.|..+|..+.++.+...                  +. .+....||+||-|+|...   .+
T Consensus         3 ~~~v~IvG~Gli-G~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLM-GGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL   81 (279)
T ss_pred             CcEEEEECCchH-HHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHH
Confidence            368999999876 99999999999998888865421                  12 567778999999999654   22


Q ss_pred             ---cCCcccCCcEEEEeeeCC
Q 027976          138 ---RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       138 ---~~~~i~~g~vViDvg~~~  155 (216)
                         .+ .+++|++|.|++..-
T Consensus        82 ~~l~~-~l~~g~iv~Dv~S~K  101 (279)
T COG0287          82 KELAP-HLKKGAIVTDVGSVK  101 (279)
T ss_pred             HHhcc-cCCCCCEEEeccccc
Confidence               22 678999999999763

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=97.31  E-value=0.00094  Score=66.02  Aligned_cols=91  Identities=15%  Similarity=0.234  Sum_probs=75.8

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCC-----------------------CCC
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL-----------------------TKN  116 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~-----------------------t~~  116 (216)
                      +..|++..++-.+.+++..++++.|+|-+ |.+++.+|...|.   ++++|+++                       ..+
T Consensus       168 ~lA~l~na~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~  246 (752)
T PRK07232        168 SAAALLNALELVGKKIEDVKIVVSGAGAA-AIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDART  246 (752)
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECccHH-HHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCC
Confidence            45678888899999999999999999988 9999999999997   69898654                       135


Q ss_pred             HHhhccCCCEEEEecCCCCcccCCcccC---CcEEEEeeeCCc
Q 027976          117 PEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV  156 (216)
Q Consensus       117 l~~~~~~ADIVIsatg~p~~i~~~~i~~---g~vViDvg~~~~  156 (216)
                      |.+.++.+|++|-..+ |+.++++|++.   .-+|+=++ ||.
T Consensus       247 l~~~i~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~  287 (752)
T PRK07232        247 LAEAIEGADVFLGLSA-AGVLTPEMVKSMADNPIIFALA-NPD  287 (752)
T ss_pred             HHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEecC-CCC
Confidence            8899999999997766 88899999864   67888777 554

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.30  E-value=0.00095  Score=60.47  Aligned_cols=76  Identities=13%  Similarity=0.173  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC--------------------CCHHhhccCCCEEEEecCCCC-
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT--------------------KNPEQITSEADIVIAAAGVAN-  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~p~-  135 (216)
                      .-+++.|||+|.- ++.-+.++.. +.. +|++.+|+.                    .+.++.+++||||+++|++.. 
T Consensus       128 da~~l~iiGaG~Q-A~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~  206 (346)
T PRK07589        128 DSRTMALIGNGAQ-SEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTN  206 (346)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCC
Confidence            3578999999875 8766554443 343 599987762                    356788999999999998654 


Q ss_pred             -c-ccCCcccCCcEEEEeeeCC
Q 027976          136 -L-VRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       136 -~-i~~~~i~~g~vViDvg~~~  155 (216)
                       + ++.+|+++|+.|.=+|.+.
T Consensus       207 ~Pvl~~~~lkpG~hV~aIGs~~  228 (346)
T PRK07589        207 ATILTDDMVEPGMHINAVGGDC  228 (346)
T ss_pred             CceecHHHcCCCcEEEecCCCC
Confidence             4 7899999999988887543

>PRK12861 malic enzyme; Reviewed

Probab=97.29  E-value=0.00077  Score=66.65  Aligned_cols=91  Identities=16%  Similarity=0.229  Sum_probs=76.0

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCC-----------------------CCC
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL-----------------------TKN  116 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~-----------------------t~~  116 (216)
                      +..|++..|+-.+.+++..++++.|+|-+ |.+++.+|...|.   ++++|+++                       ..+
T Consensus       172 ~lA~llnal~~~gk~l~d~~iv~~GAGaA-g~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~  250 (764)
T PRK12861        172 VSAAFINGLKVVGKSIKEVKVVTSGAGAA-ALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDART  250 (764)
T ss_pred             HHHHHHHHHHHhCCChhHcEEEEECHhHH-HHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCC
Confidence            45678888999999999999999999988 9999999999997   59999743                       135


Q ss_pred             HHhhccCCCEEEEecCCCCcccCCcccC---CcEEEEeeeCCc
Q 027976          117 PEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV  156 (216)
Q Consensus       117 l~~~~~~ADIVIsatg~p~~i~~~~i~~---g~vViDvg~~~~  156 (216)
                      |.+.++.+|++|-..+ |+.++++|++.   .-+|+=++ ||.
T Consensus       251 L~eai~~advliG~S~-~g~ft~e~v~~Ma~~PIIFaLs-NPt  291 (764)
T PRK12861        251 LAEVIGGADVFLGLSA-GGVLKAEMLKAMAARPLILALA-NPT  291 (764)
T ss_pred             HHHHHhcCCEEEEcCC-CCCCCHHHHHHhccCCEEEECC-CCC
Confidence            7899999999997765 88899999864   67888777 554

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.27  E-value=0.00068  Score=59.74  Aligned_cols=75  Identities=20%  Similarity=0.276  Sum_probs=58.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----ccc-C--
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR-G--  139 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i~-~--  139 (216)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .+..+.++++|+||.+++...    .+. .  
T Consensus         2 ~~Ig~IGlG~m-G~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~   80 (296)
T PRK15461          2 AAIAFIGLGQM-GSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENG   80 (296)
T ss_pred             CeEEEEeeCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCccc
Confidence            37999999886 9999999999999999998762              245667889999999998653    121 1  


Q ss_pred             --CcccCCcEEEEeeeCCc
Q 027976          140 --SWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       140 --~~i~~g~vViDvg~~~~  156 (216)
                        ..++++.++||++....
T Consensus        81 i~~~l~~g~lvid~sT~~p   99 (296)
T PRK15461         81 VCEGLSRDALVIDMSTIHP   99 (296)
T ss_pred             HhhcCCCCCEEEECCCCCH
Confidence              12567899999986643

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.24  E-value=0.0012  Score=58.82  Aligned_cols=76  Identities=21%  Similarity=0.288  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC--------------------CCHHhhccCCCEEEEecCCCC-
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT--------------------KNPEQITSEADIVIAAAGVAN-  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~p~-  135 (216)
                      .-+++.|||+|.- |+.-+.+|.. ++. +|.+.+|+.                    .+.++.+++|||||++|++.. 
T Consensus       127 ~~~~l~viGaG~Q-A~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~  205 (313)
T PF02423_consen  127 DARTLGVIGAGVQ-ARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP  205 (313)
T ss_dssp             T--EEEEE--SHH-HHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE
T ss_pred             CCceEEEECCCHH-HHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC
Confidence            3478999999875 8876666544 454 699998762                    357899999999999999877 


Q ss_pred             -c-ccCCcccCCcEEEEeeeCC
Q 027976          136 -L-VRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       136 -~-i~~~~i~~g~vViDvg~~~  155 (216)
                       + ++.+|+++|+.|.-+|...
T Consensus       206 ~P~~~~~~l~~g~hi~~iGs~~  227 (313)
T PF02423_consen  206 APVFDAEWLKPGTHINAIGSYT  227 (313)
T ss_dssp             EESB-GGGS-TT-EEEE-S-SS
T ss_pred             CccccHHHcCCCcEEEEecCCC
Confidence             5 8999999999999998763

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=97.24  E-value=0.0007  Score=60.96  Aligned_cols=80  Identities=16%  Similarity=0.317  Sum_probs=62.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhccCCCEEEEecCC-CC---ccc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGV-AN---LVR  138 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~ADIVIsatg~-p~---~i~  138 (216)
                      .+++||+|.|+|.|.+ |+.+|..|...|+.+.-+.|+..             ++.+.+.++|+||.+-+. +.   .+.
T Consensus       158 ~~~~gK~vgilG~G~I-G~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liN  236 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRI-GKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLIN  236 (336)
T ss_pred             ccccCCEEEEecCcHH-HHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhh
Confidence            4689999999999997 99999999998865665555421             677889999999988874 32   355


Q ss_pred             CC---cccCCcEEEEeeeCCc
Q 027976          139 GS---WLKPGAVVLDVGTCPV  156 (216)
Q Consensus       139 ~~---~i~~g~vViDvg~~~~  156 (216)
                      ++   ++++|+++++++--..
T Consensus       237 k~~~~~mk~g~vlVN~aRG~i  257 (336)
T KOG0069|consen  237 KKFIEKMKDGAVLVNTARGAI  257 (336)
T ss_pred             HHHHHhcCCCeEEEecccccc
Confidence            43   4688999999986543

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=97.20  E-value=0.0016  Score=62.47  Aligned_cols=93  Identities=13%  Similarity=0.228  Sum_probs=75.6

Q ss_pred             CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh-----CCC-------EEEEEeCC----------------
Q 027976           62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-----HHA-------TVSIVHAL----------------  113 (216)
Q Consensus        62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~-----~ga-------~Vti~~~~----------------  113 (216)
                      ++-.|++..++-.+.+++..+++++|+|.+ |..+|.+|..     .|.       ++++++++                
T Consensus       303 V~lAgll~A~r~~g~~l~d~riv~~GAGsA-gigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~  381 (581)
T PLN03129        303 VALAGLLAALRATGGDLADQRILFAGAGEA-GTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKK  381 (581)
T ss_pred             HHHHHHHHHHHHhCCchhhceEEEECCCHH-HHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHH
Confidence            455778889999999999999999999988 9999998876     465       58888654                


Q ss_pred             --------CCCHHhhccC--CCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976          114 --------TKNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  156 (216)
Q Consensus       114 --------t~~l~~~~~~--ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~  156 (216)
                              ..+|.+.++.  +|++|.+++.++.+++++++      +.-+|+=++ ||.
T Consensus       382 ~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS-NPt  439 (581)
T PLN03129        382 PFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS-NPT  439 (581)
T ss_pred             HHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                    0257888888  99999999888889999886      456787777 554

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.20  E-value=0.00067  Score=57.27  Aligned_cols=72  Identities=28%  Similarity=0.344  Sum_probs=56.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------CHHhhccCCCEEEEecCCCCc--ccC--
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQITSEADIVIAAAGVANL--VRG--  139 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~l~~~~~~ADIVIsatg~p~~--i~~--  139 (216)
                      +++.|+|+|.. |.+++..|+..|.+|++.+|+.+                 ...++.+.||+||-|++-+..  +-+  
T Consensus         2 ~~~~i~GtGni-G~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l   80 (211)
T COG2085           2 MIIAIIGTGNI-GSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL   80 (211)
T ss_pred             cEEEEeccChH-HHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence            46899999986 99999999999999999977642                 345788999999999996543  212  


Q ss_pred             -CcccCCcEEEEeeeCC
Q 027976          140 -SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       140 -~~i~~g~vViDvg~~~  155 (216)
                       +++. |.+|||+. ||
T Consensus        81 ~~~~~-~KIvID~t-np   95 (211)
T COG2085          81 RDALG-GKIVIDAT-NP   95 (211)
T ss_pred             HHHhC-CeEEEecC-CC
Confidence             2233 89999987 44

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=97.15  E-value=0.0063  Score=56.20  Aligned_cols=95  Identities=23%  Similarity=0.304  Sum_probs=65.1

Q ss_pred             CcHHHHHHHHHHh--CCCCCCCeEEEEcC----------------CchhHHHHHHHHHhCCCEEEEEeCCCC--------
Q 027976           62 CTPKGCIELLIRS--GVEIMGKNAVVIGR----------------SNIVGLPTSLLLQRHHATVSIVHALTK--------  115 (216)
Q Consensus        62 ~Ta~g~~~~L~~~--~~~l~gk~v~ViG~----------------gg~vg~~~a~~L~~~ga~Vti~~~~t~--------  115 (216)
                      +.+.-+++.+++.  ..+++||+++|.|+                +|.+|+++|..|..+|++|+++++...        
T Consensus       168 ~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~~  247 (399)
T PRK05579        168 AEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVK  247 (399)
T ss_pred             CCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCcE
Confidence            3455555555433  24689999999999                675699999999999999998865421        


Q ss_pred             --------C----HHhhccCCCEEEEecCCCCcc----cCCcccCC--cEEEEeeeCCc
Q 027976          116 --------N----PEQITSEADIVIAAAGVANLV----RGSWLKPG--AVVLDVGTCPV  156 (216)
Q Consensus       116 --------~----l~~~~~~ADIVIsatg~p~~i----~~~~i~~g--~vViDvg~~~~  156 (216)
                              +    +.+...+.|++|++.+...+-    ...-++++  ...+.+.-+|+
T Consensus       248 ~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~~~~~~~~Kikk~~~~~~l~L~~~pd  306 (399)
T PRK05579        248 RIDVESAQEMLDAVLAALPQADIFIMAAAVADYRPATVAEGKIKKGEGELTLELVPNPD  306 (399)
T ss_pred             EEccCCHHHHHHHHHHhcCCCCEEEEcccccccccccccccCccCCCCCceEEEEeCcH
Confidence                    1    123456789999988865442    22335543  36678777764

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.14  E-value=0.001  Score=58.66  Aligned_cols=74  Identities=26%  Similarity=0.325  Sum_probs=56.3

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC----------------CCHHhhccCCCEEEEecCCCCc---cc
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------KNPEQITSEADIVIAAAGVANL---VR  138 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~~---i~  138 (216)
                      .++|.|||.|.+ |..++..|.+.|.  +|++++++.                .+..+.++++|+||.+++....   +.
T Consensus         6 ~~~I~IIG~G~m-G~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~   84 (307)
T PRK07502          6 FDRVALIGIGLI-GSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAA   84 (307)
T ss_pred             CcEEEEEeeCHH-HHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHH
Confidence            368999999875 9999999998884  788887752                2445678899999999986431   11


Q ss_pred             --CCcccCCcEEEEeeeC
Q 027976          139 --GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       139 --~~~i~~g~vViDvg~~  154 (216)
                        ..+++++.+|+|++..
T Consensus        85 ~l~~~l~~~~iv~dvgs~  102 (307)
T PRK07502         85 EIAPHLKPGAIVTDVGSV  102 (307)
T ss_pred             HHHhhCCCCCEEEeCccc
Confidence              2456889999999863

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=97.11  E-value=0.0019  Score=59.55  Aligned_cols=91  Identities=18%  Similarity=0.302  Sum_probs=72.7

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCCC------CC-----------------
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT------KN-----------------  116 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t------~~-----------------  116 (216)
                      |..|++..|+-.+.+++..++++.|+|-+ |-+++.+|...|.   +|++|+|.-      ++                 
T Consensus       182 ~lA~llnalk~~gk~l~d~kiv~~GAGAA-giaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~  260 (432)
T COG0281         182 TLAALLNALKLTGKKLKDQKIVINGAGAA-GIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGE  260 (432)
T ss_pred             HHHHHHHHHHHhCCCccceEEEEeCCcHH-HHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhcc
Confidence            45678899999999999999999999987 9999999999997   599997751      00                 


Q ss_pred             -H-HhhccCCCEEEEecCCCCcccCCcccC---CcEEEEeeeCCc
Q 027976          117 -P-EQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV  156 (216)
Q Consensus       117 -l-~~~~~~ADIVIsatg~p~~i~~~~i~~---g~vViDvg~~~~  156 (216)
                       . ...+..+|++|..++. +.++++|++.   +-+|+=++ ||.
T Consensus       261 ~~~~~~~~~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfala-NP~  303 (432)
T COG0281         261 RTLDLALAGADVLIGVSGV-GAFTEEMVKEMAKHPIIFALA-NPT  303 (432)
T ss_pred             ccccccccCCCEEEEcCCC-CCcCHHHHHHhccCCEEeecC-CCC
Confidence             0 2356779999988877 7889999864   66787777 554

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=97.08  E-value=0.0013  Score=59.02  Aligned_cols=71  Identities=17%  Similarity=0.182  Sum_probs=55.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCC---cccC-
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVAN---LVRG-  139 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~---~i~~-  139 (216)
                      .|+||+|.|||.|.. |+++|..|...|++|++.++..             .++.+.+++||+|+..++.+.   .+.. 
T Consensus        13 ~LkgKtVGIIG~GsI-G~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~e   91 (335)
T PRK13403         13 LLQGKTVAVIGYGSQ-GHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAE   91 (335)
T ss_pred             hhCcCEEEEEeEcHH-HHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence            378999999999876 9999999999999999886542             157788999999999888533   2332 


Q ss_pred             --CcccCCcEE
Q 027976          140 --SWLKPGAVV  148 (216)
Q Consensus       140 --~~i~~g~vV  148 (216)
                        ..+++|+++
T Consensus        92 il~~MK~GaiL  102 (335)
T PRK13403         92 VEENLREGQML  102 (335)
T ss_pred             HHhcCCCCCEE
Confidence              335777654

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.06  E-value=0.0015  Score=51.52  Aligned_cols=54  Identities=26%  Similarity=0.414  Sum_probs=44.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHHhhccCCCEEEEecCCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      ||.|||++|.||..++..|...+.  ++.++++..                        ...++.+++|||||.+.|.|.
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~   81 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPR   81 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccccc
Confidence            799999966789999999999884  688887652                        134688999999999998763

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.06  E-value=0.0013  Score=59.59  Aligned_cols=74  Identities=27%  Similarity=0.412  Sum_probs=55.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------------CCHHhhccCCCEEEEecCCCC---cc--
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSEADIVIAAAGVAN---LV--  137 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~~~ADIVIsatg~p~---~i--  137 (216)
                      ++|.|||.|.+ |.+++..|.+.|..|.+..++.                  .++.+.+++||+||-+++...   .+  
T Consensus         1 ~~I~iIG~Gli-G~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~   79 (359)
T PRK06545          1 RTVLIVGLGLI-GGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAE   79 (359)
T ss_pred             CeEEEEEeCHH-HHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHH
Confidence            47999999876 9999999999998877776542                  234556789999999998543   12  


Q ss_pred             -cCCcccCCcEEEEeeeCC
Q 027976          138 -RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       138 -~~~~i~~g~vViDvg~~~  155 (216)
                       .+..++++.+|.|++...
T Consensus        80 l~~~~l~~~~ivtDv~SvK   98 (359)
T PRK06545         80 LADLELKPGVIVTDVGSVK   98 (359)
T ss_pred             HhhcCCCCCcEEEeCcccc
Confidence             221367899999998753

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.04  E-value=0.00073  Score=58.96  Aligned_cols=73  Identities=27%  Similarity=0.260  Sum_probs=54.5

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---------------HHhhccCCCEEEEecCCCCc---cc--CCc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------PEQITSEADIVIAAAGVANL---VR--GSW  141 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------l~~~~~~ADIVIsatg~p~~---i~--~~~  141 (216)
                      +|.|||.|.+ |..++..|.+.|.+|++++++.+.               ..+.+++||+||.+++....   +.  ...
T Consensus         2 ~I~IIG~G~m-G~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~   80 (279)
T PRK07417          2 KIGIVGLGLI-GGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA   80 (279)
T ss_pred             eEEEEeecHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence            6899999875 999999999999999999875311               12457889999999985331   11  133


Q ss_pred             ccCCcEEEEeeeCC
Q 027976          142 LKPGAVVLDVGTCP  155 (216)
Q Consensus       142 i~~g~vViDvg~~~  155 (216)
                      ++++.+|.|++.-.
T Consensus        81 l~~~~ii~d~~Svk   94 (279)
T PRK07417         81 LPPEAIVTDVGSVK   94 (279)
T ss_pred             CCCCcEEEeCcchH
Confidence            57789999998643

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.98  E-value=0.0017  Score=59.32  Aligned_cols=77  Identities=18%  Similarity=0.225  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCC---CCHHhhccCCCEEEEecCCCC---ccc---C--CcccCCc
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT---KNPEQITSEADIVIAAAGVAN---LVR---G--SWLKPGA  146 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t---~~l~~~~~~ADIVIsatg~p~---~i~---~--~~i~~g~  146 (216)
                      .-.+|+|||..|.+|..++..|.+. +.+|+.+.+..   .++.+.+++||+||-|++...   .+.   +  .++++++
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~   82 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQ   82 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCe
Confidence            4568999999444599999999875 67888887643   356778999999999999643   222   1  1378999


Q ss_pred             EEEEeeeCC
Q 027976          147 VVLDVGTCP  155 (216)
Q Consensus       147 vViDvg~~~  155 (216)
                      +|.|++..-
T Consensus        83 iVtDVgSvK   91 (370)
T PRK08818         83 LWLDVTSIK   91 (370)
T ss_pred             EEEECCCCc
Confidence            999999753

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.97  E-value=0.002  Score=59.44  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ++++|+|+|+|+|+ +|+++|..|+++|++|+++.+..
T Consensus         2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence            46899999999999 59999999999999999998763

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.95  E-value=0.0022  Score=56.85  Aligned_cols=54  Identities=20%  Similarity=0.346  Sum_probs=42.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCCC------------------------CHHhhccCCCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK------------------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~------------------------~l~~~~~~ADIVIsatg~p  134 (216)
                      ++|.|||+|++ |++++..|+.+|.  ++++++++.+                        .-.+.+++||+||.++|.|
T Consensus         1 ~kI~IIGaG~v-G~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGHV-GSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence            47999999885 9999999999993  7999977521                        1125578999999999976


Q ss_pred             C
Q 027976          135 N  135 (216)
Q Consensus       135 ~  135 (216)
                      .
T Consensus        80 ~   80 (306)
T cd05291          80 Q   80 (306)
T ss_pred             C
Confidence            3

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.94  E-value=0.001  Score=50.82  Aligned_cols=75  Identities=24%  Similarity=0.257  Sum_probs=52.6

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCC-CE-EEEEeCCC---CCH-------------------HhhccCCCEEEEecCCCC--
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHH-AT-VSIVHALT---KNP-------------------EQITSEADIVIAAAGVAN--  135 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~g-a~-Vti~~~~t---~~l-------------------~~~~~~ADIVIsatg~p~--  135 (216)
                      ||.|+|+.|.+|+.++.+|+++- ++ +.++.+..   +.+                   .+.+.++|+||.|++...  
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            68999988999999999998864 45 55554443   111                   244689999999998531  


Q ss_pred             cccCCcccCCcEEEEeeeCCc
Q 027976          136 LVRGSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       136 ~i~~~~i~~g~vViDvg~~~~  156 (216)
                      .+-+..+++|..|||.+...+
T Consensus        81 ~~~~~~~~~g~~ViD~s~~~R  101 (121)
T PF01118_consen   81 ELAPKLLKAGIKVIDLSGDFR  101 (121)
T ss_dssp             HHHHHHHHTTSEEEESSSTTT
T ss_pred             HHHHHHhhCCcEEEeCCHHHh
Confidence            133444788999999987764

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.94  E-value=0.0025  Score=54.39  Aligned_cols=59  Identities=10%  Similarity=0.135  Sum_probs=44.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-CCH-----------------HhhccCCCEEEEecCCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP-----------------EQITSEADIVIAAAGVAN  135 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l-----------------~~~~~~ADIVIsatg~p~  135 (216)
                      ++++|++|+|||.|.. |.-=+..|++.||+|+|+...- +++                 .+.+..+++||.||..+.
T Consensus        21 l~~~~~~VLVVGGG~V-A~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~   97 (223)
T PRK05562         21 LLSNKIKVLIIGGGKA-AFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK   97 (223)
T ss_pred             EECCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH
Confidence            4577999999999886 7665678889999999985431 111                 244778999999998764

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.94  E-value=0.0018  Score=56.70  Aligned_cols=70  Identities=21%  Similarity=0.308  Sum_probs=54.2

Q ss_pred             EEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----cc--C---Cc
Q 027976           85 VIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VR--G---SW  141 (216)
Q Consensus        85 ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i~--~---~~  141 (216)
                      +||.|.+ |.+++..|++.|.+|++++++.              .+..+.++++|+||.+++.+..    +.  .   ..
T Consensus         1 ~IGlG~m-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~   79 (288)
T TIGR01692         1 FIGLGNM-GGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK   79 (288)
T ss_pred             CCcccHh-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc
Confidence            4789875 9999999999999999998762              3566788999999999987442    11  1   23


Q ss_pred             ccCCcEEEEeeeCC
Q 027976          142 LKPGAVVLDVGTCP  155 (216)
Q Consensus       142 i~~g~vViDvg~~~  155 (216)
                      ++++.++||++...
T Consensus        80 ~~~g~~vid~st~~   93 (288)
T TIGR01692        80 VAKGSLLIDCSTID   93 (288)
T ss_pred             CCCCCEEEECCCCC
Confidence            57789999998554

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.90  E-value=0.002  Score=59.54  Aligned_cols=74  Identities=27%  Similarity=0.332  Sum_probs=54.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------CHHhh---------------ccCCCEEEEe
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQI---------------TSEADIVIAA  130 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~---------------~~~ADIVIsa  130 (216)
                      ++|.|||.|-. |.++|..|++.|.+|+.++++..               .+.+.               .++||+||.+
T Consensus         4 ~kI~VIGlG~~-G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          4 ETISVIGLGYI-GLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             cEEEEECcchh-hHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            68999999875 99999999999999999987632               12222               3379999999


Q ss_pred             cCCCC---------ccc------CCcccCCcEEEEeeeCC
Q 027976          131 AGVAN---------LVR------GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       131 tg~p~---------~i~------~~~i~~g~vViDvg~~~  155 (216)
                      ++.|.         .+.      ...+++|++||+.+..+
T Consensus        83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~  122 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP  122 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence            99761         111      13357788888876643

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.89  E-value=0.0026  Score=57.36  Aligned_cols=70  Identities=21%  Similarity=0.219  Sum_probs=52.9

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC---cccC-
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN---LVRG-  139 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~---~i~~-  139 (216)
                      ++||+|.|||.|.. |+++|..|...|.+|.+..+..              .+..+.+++||+|+.+++...   .+.. 
T Consensus        15 L~gktIgIIG~Gsm-G~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~   93 (330)
T PRK05479         15 IKGKKVAIIGYGSQ-GHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEE   93 (330)
T ss_pred             hCCCEEEEEeeHHH-HHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHH
Confidence            68999999999875 9999999999999988876541              145678899999999998432   1211 


Q ss_pred             --CcccCCcEE
Q 027976          140 --SWLKPGAVV  148 (216)
Q Consensus       140 --~~i~~g~vV  148 (216)
                        ..++++.+|
T Consensus        94 I~~~Lk~g~iL  104 (330)
T PRK05479         94 IEPNLKEGAAL  104 (330)
T ss_pred             HHhcCCCCCEE
Confidence              235667665

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.89  E-value=0.0031  Score=55.55  Aligned_cols=72  Identities=18%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccC---CCEEEEecCCCCc----cc--
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSE---ADIVIAAAGVANL----VR--  138 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~---ADIVIsatg~p~~----i~--  138 (216)
                      ++.+||.|.+ |.+++..|++.|.+|++++++.              .+..+..++   +|+||.+++.+..    +.  
T Consensus         2 ~Ig~IGlG~m-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i   80 (299)
T PRK12490          2 KLGLIGLGKM-GGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL   80 (299)
T ss_pred             EEEEEcccHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence            5899999886 9999999999999999998862              244555554   6999999997621    11  


Q ss_pred             CCcccCCcEEEEeeeC
Q 027976          139 GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       139 ~~~i~~g~vViDvg~~  154 (216)
                      ...+++|.++||++..
T Consensus        81 ~~~l~~g~ivid~st~   96 (299)
T PRK12490         81 YPLLSPGDIVVDGGNS   96 (299)
T ss_pred             hccCCCCCEEEECCCC
Confidence            1235788999999654

>PRK13529 malate dehydrogenase; Provisional

Probab=96.88  E-value=0.0031  Score=60.24  Aligned_cols=93  Identities=13%  Similarity=0.203  Sum_probs=74.8

Q ss_pred             CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh----CCC-------EEEEEeCC-----------------
Q 027976           62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL-----------------  113 (216)
Q Consensus        62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~-----------------  113 (216)
                      .+-.|++..++-.+.++++.+++++|+|.+ |..+|.+|..    .|.       ++++++++                 
T Consensus       277 V~LAgll~A~r~~g~~l~d~riv~~GAGsA-giGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~f  355 (563)
T PRK13529        277 VTLAGLLAALKITGEPLSDQRIVFLGAGSA-GCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPY  355 (563)
T ss_pred             HHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHH
Confidence            455778889999999999999999999988 9999999876    576       68888654                 


Q ss_pred             ---C------------CCHHhhccCC--CEEEEecCCCCcccCCcccC------CcEEEEeeeCCc
Q 027976          114 ---T------------KNPEQITSEA--DIVIAAAGVANLVRGSWLKP------GAVVLDVGTCPV  156 (216)
Q Consensus       114 ---t------------~~l~~~~~~A--DIVIsatg~p~~i~~~~i~~------g~vViDvg~~~~  156 (216)
                         +            .+|.+.++.+  |++|-.++.|+.+++++++.      .-+|+=++ ||.
T Consensus       356 a~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt  420 (563)
T PRK13529        356 ARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLS-NPT  420 (563)
T ss_pred             hhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CcC
Confidence               0            2577889888  99999988888889888753      55777776 554

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.86  E-value=0.0023  Score=59.09  Aligned_cols=127  Identities=20%  Similarity=0.244  Sum_probs=66.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---HHhhccCCCEEEEecCCCCcccCCccc--CCcEEEEe
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---PEQITSEADIVIAAAGVANLVRGSWLK--PGAVVLDV  151 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---l~~~~~~ADIVIsatg~p~~i~~~~i~--~g~vViDv  151 (216)
                      +++||+++|+|.|+ .|+++|..|+++|++|+++.+....   ..+.++...+-+. .|.   ...+.+.  .+.+|.--
T Consensus         2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~-~~~---~~~~~~~~~~d~vV~s~   76 (447)
T PRK02472          2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVI-CGS---HPLELLDEDFDLMVKNP   76 (447)
T ss_pred             CcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEE-eCC---CCHHHhcCcCCEEEECC
Confidence            36799999999999 5999999999999999999765311   1122222121111 110   0001111  12333333


Q ss_pred             eeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976          152 GTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       152 g~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      ++++...........+-+++++.++..... ...+.-|-|--|.=|+..|+.+++...
T Consensus        77 gi~~~~~~~~~a~~~~i~v~~~~el~~~~~-~~~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         77 GIPYTNPMVEKALEKGIPIITEVELAYLIS-EAPIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             CCCCCCHHHHHHHHCCCcEEeHHHHHHHhc-CCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence            333321000000011235677666522211 111223457789999999999888753

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.85  E-value=0.0052  Score=55.40  Aligned_cols=76  Identities=20%  Similarity=0.323  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhC-CC-EEEEEeCCC---------------------CCHHhhccCCCEEEEecCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      .-+...|||+|-- ++.-++.+... +. +|.|..|+.                     .+.++.++.|||||++|+...
T Consensus       129 da~~laiIGaG~q-A~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~  207 (330)
T COG2423         129 DASTLAIIGAGAQ-ARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE  207 (330)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC
Confidence            3567999999875 88766666543 43 588887762                     356789999999999999766


Q ss_pred             c-ccCCcccCCcEEEEeeeCC
Q 027976          136 L-VRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       136 ~-i~~~~i~~g~vViDvg~~~  155 (216)
                      + +..+|+++|+.|.-+|.+.
T Consensus       208 Pil~~~~l~~G~hI~aiGad~  228 (330)
T COG2423         208 PVLKAEWLKPGTHINAIGADA  228 (330)
T ss_pred             CeecHhhcCCCcEEEecCCCC
Confidence            5 8999999999999888654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.84  E-value=0.0029  Score=55.33  Aligned_cols=74  Identities=15%  Similarity=0.200  Sum_probs=53.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------------------------CCHHhhcc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------------KNPEQITS  122 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------------~~l~~~~~  122 (216)
                      ++|.|||+|-+ |.++|..|++.|.+|++++++.                                      .++.+.++
T Consensus         2 ~~V~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          2 EKLVVVGAGVM-GRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             cEEEEECccHH-HHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            57999999875 9999999999999999996641                                      23446788


Q ss_pred             CCCEEEEecCCCCccc-------CCcccCCcEE-EEeeeCC
Q 027976          123 EADIVIAAAGVANLVR-------GSWLKPGAVV-LDVGTCP  155 (216)
Q Consensus       123 ~ADIVIsatg~p~~i~-------~~~i~~g~vV-iDvg~~~  155 (216)
                      +||+||.+++...-+.       .+.+++++++ +|.+.-+
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~  121 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS  121 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence            9999999998653121       1345667654 5666433

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.83  E-value=0.0029  Score=55.78  Aligned_cols=73  Identities=16%  Similarity=0.250  Sum_probs=55.5

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCC----cc-cCC---
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVAN----LV-RGS---  140 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~----~i-~~~---  140 (216)
                      +|.+||.|.+ |.+++..|.+.|.+|++++++.             .+..+..+++|+||.+++.+.    .+ ..+   
T Consensus         2 ~Ig~IGlG~M-G~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          2 KLGFIGLGIM-GTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             eEEEEccCHH-HHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            5899999886 9999999999999999987652             234566789999999998543    12 211   


Q ss_pred             -cccCCcEEEEeeeCC
Q 027976          141 -WLKPGAVVLDVGTCP  155 (216)
Q Consensus       141 -~i~~g~vViDvg~~~  155 (216)
                       .+++|.++||++...
T Consensus        81 ~~~~~g~ivvd~sT~~   96 (292)
T PRK15059         81 KASLKGKTIVDMSSIS   96 (292)
T ss_pred             ccCCCCCEEEECCCCC
Confidence             246789999998543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.82  E-value=0.003  Score=50.61  Aligned_cols=52  Identities=27%  Similarity=0.293  Sum_probs=44.0

Q ss_pred             EEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------CHHhhccCCCEEEEecCCC
Q 027976           83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        83 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~~~~~ADIVIsatg~p  134 (216)
                      |+|+|++|.+|+.++..|+++|++|+.+.|+..                   .+.+.++.+|.||.+.|.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~   71 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP   71 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence            689999888999999999999999999977632                   2467788999999998843

...

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.81  E-value=0.0035  Score=54.60  Aligned_cols=71  Identities=11%  Similarity=0.234  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCC----CEEEEEeCCC----------------CCHHhhccCCCEEEEecCCCCc---
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALT----------------KNPEQITSEADIVIAAAGVANL---  136 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~g----a~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~~---  136 (216)
                      ..++.+||.|.+ |.+++..|.+.|    .+|++++|+.                .+..+.+++||+||.++.....   
T Consensus         3 ~mkI~~IG~G~m-G~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~v   81 (279)
T PRK07679          3 IQNISFLGAGSI-AEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEA   81 (279)
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHH
Confidence            458999999876 999999999987    5688888742                1334567889999999985432   


Q ss_pred             cc--CCcccCCcEEEEe
Q 027976          137 VR--GSWLKPGAVVLDV  151 (216)
Q Consensus       137 i~--~~~i~~g~vViDv  151 (216)
                      +.  .+.++++.+|||+
T Consensus        82 l~~l~~~~~~~~liIs~   98 (279)
T PRK07679         82 LIPFKEYIHNNQLIISL   98 (279)
T ss_pred             HHHHHhhcCCCCEEEEE
Confidence            21  1335678899997

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.80  E-value=0.0028  Score=52.01  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=26.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|.|||+|.+ |+.+|..++..|.+|+++.++
T Consensus         1 ~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~   31 (180)
T PF02737_consen    1 KVAVIGAGTM-GRGIAALFARAGYEVTLYDRS   31 (180)
T ss_dssp             EEEEES-SHH-HHHHHHHHHHTTSEEEEE-SS
T ss_pred             CEEEEcCCHH-HHHHHHHHHhCCCcEEEEECC
Confidence            6899999876 999999999999999999665

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.79  E-value=0.0034  Score=58.51  Aligned_cols=71  Identities=21%  Similarity=0.343  Sum_probs=54.4

Q ss_pred             eEEEEc-CCchhHHHHHHHHHhCCCEEEEEeCCCC---------------CHHhhccCCCEEEEecCCCC---ccc--CC
Q 027976           82 NAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGVAN---LVR--GS  140 (216)
Q Consensus        82 ~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~~ADIVIsatg~p~---~i~--~~  140 (216)
                      ++.||| .|. +|.+++..|.+.|.+|+++.++.+               +..+.+.+||+||.+++...   .+.  ..
T Consensus         2 kI~IIGG~G~-mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~   80 (437)
T PRK08655          2 KISIIGGTGG-LGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAP   80 (437)
T ss_pred             EEEEEecCCH-HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHh
Confidence            689998 455 599999999999999999877531               34566788999999998533   121  23


Q ss_pred             cccCCcEEEEeee
Q 027976          141 WLKPGAVVLDVGT  153 (216)
Q Consensus       141 ~i~~g~vViDvg~  153 (216)
                      .++++++|+|++.
T Consensus        81 ~l~~~~iViDvsS   93 (437)
T PRK08655         81 HVKEGSLLMDVTS   93 (437)
T ss_pred             hCCCCCEEEEccc
Confidence            4678999999996

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.78  E-value=0.0022  Score=60.08  Aligned_cols=113  Identities=14%  Similarity=0.246  Sum_probs=68.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-CCC-----------------HHhhccCCCEEEEecCCCCc-
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-TKN-----------------PEQITSEADIVIAAAGVANL-  136 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-t~~-----------------l~~~~~~ADIVIsatg~p~~-  136 (216)
                      ++++||+|+|||.|.. |.-=+..|++.||+|+|+... +++                 ..+.++.+++||.||+.+.. 
T Consensus         8 ~~l~~~~vlvvGgG~v-A~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n   86 (457)
T PRK10637          8 CQLRDRDCLLVGGGDV-AERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVN   86 (457)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHh
Confidence            5789999999999885 766577888999999998432 111                 13457789999999987642 


Q ss_pred             --ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhh---HcceecccCCcccHHHHHHHHHHHH
Q 027976          137 --VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNTL  206 (216)
Q Consensus       137 --i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~---~~~~~tpvpgGvGp~T~amLl~n~~  206 (216)
                        |... -+...+.+++.-+|..              +|+-|...-+   ..-+++  -+|-.|..+..|-++.-
T Consensus        87 ~~i~~~-a~~~~~lvN~~d~~~~--------------~~f~~pa~~~~g~l~iais--T~G~sP~~a~~lr~~ie  144 (457)
T PRK10637         87 QRVSEA-AEARRIFCNVVDAPKA--------------ASFIMPSIIDRSPLMVAVS--SGGTSPVLARLLREKLE  144 (457)
T ss_pred             HHHHHH-HHHcCcEEEECCCccc--------------CeEEEeeEEecCCEEEEEE--CCCCCcHHHHHHHHHHH
Confidence              2111 1222345566655432              2222233211   123344  56888888877654443

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.77  E-value=0.0028  Score=56.35  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=54.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHHhhccCCCEEEEecC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~ADIVIsatg  132 (216)
                      .+|.|||+|.+ |.+++..|++.|.+|++.+|+.                            .++.+.++++|+||.+++
T Consensus         5 m~I~iIG~G~m-G~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          5 MRVAVLGAGAW-GTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            47999999875 9999999999999999997742                            134456788999999998


Q ss_pred             CCCccc-CCcccCCcEEEEeee
Q 027976          133 VANLVR-GSWLKPGAVVLDVGT  153 (216)
Q Consensus       133 ~p~~i~-~~~i~~g~vViDvg~  153 (216)
                      ....-. -+.++++.+++++.-
T Consensus        84 ~~~~~~v~~~l~~~~~vi~~~~  105 (328)
T PRK14618         84 SKALRETLAGLPRALGYVSCAK  105 (328)
T ss_pred             hHHHHHHHHhcCcCCEEEEEee
Confidence            654210 133577888999864

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.74  E-value=0.0035  Score=54.81  Aligned_cols=72  Identities=17%  Similarity=0.230  Sum_probs=51.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC----EEEEEeCCC---------------CCHHhhccCCCEEEEecCCCCc---cc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA----TVSIVHALT---------------KNPEQITSEADIVIAAAGVANL---VR  138 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga----~Vti~~~~t---------------~~l~~~~~~ADIVIsatg~p~~---i~  138 (216)
                      .++.+||.|.+ |.+++..|.+.|.    +|++++++.               .+..+.+++||+||-++.-...   +.
T Consensus         3 ~~IgfIG~G~M-G~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~   81 (272)
T PRK12491          3 KQIGFIGCGNM-GIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVIN   81 (272)
T ss_pred             CeEEEECccHH-HHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHH
Confidence            47999999886 9999999998873    588887652               1334567889999999983221   11


Q ss_pred             --CCcccCCcEEEEeee
Q 027976          139 --GSWLKPGAVVLDVGT  153 (216)
Q Consensus       139 --~~~i~~g~vViDvg~  153 (216)
                        ...++++.+|||+.-
T Consensus        82 ~l~~~~~~~~lvISi~A   98 (272)
T PRK12491         82 QIKDQIKNDVIVVTIAA   98 (272)
T ss_pred             HHHHhhcCCcEEEEeCC
Confidence              123567788888853

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.74  E-value=0.0042  Score=56.96  Aligned_cols=75  Identities=23%  Similarity=0.317  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHh-C-CC-EEEEEeCCC-----------------------CCHHhhccCCCEEEEecC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQR-H-HA-TVSIVHALT-----------------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~-~-ga-~Vti~~~~t-----------------------~~l~~~~~~ADIVIsatg  132 (216)
                      .-+++.|||+|.- |+.-+.+++. + .. +|++.+|+.                       .+.++.+++||||+++|+
T Consensus       154 da~~l~iiG~G~Q-A~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~  232 (379)
T PRK06199        154 DSKVVGLLGPGVM-GKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNS  232 (379)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccC
Confidence            4578999999986 8887777665 3 23 699987752                       235678999999999997


Q ss_pred             CCC------c-ccCCcccCCcEEEEeeeC
Q 027976          133 VAN------L-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       133 ~p~------~-i~~~~i~~g~vViDvg~~  154 (216)
                      +..      + +..+|+++|+.|.=+|..
T Consensus       233 s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~  261 (379)
T PRK06199        233 GETGDPSTYPYVKREWVKPGAFLLMPAAC  261 (379)
T ss_pred             CCCCCCCcCcEecHHHcCCCcEEecCCcc
Confidence            432      3 789999999988766653

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=96.71  E-value=0.0051  Score=58.80  Aligned_cols=94  Identities=15%  Similarity=0.227  Sum_probs=74.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh----CCC-------EEEEEeCC----------------
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL----------------  113 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~----------------  113 (216)
                      -++-.|++..++-.+.+++..+++++|+|.+ |..+|.+|..    .|.       ++++++++                
T Consensus       278 aV~lAgll~Alr~~g~~l~d~riv~~GAGsA-giGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~  356 (559)
T PTZ00317        278 AVIAAGFLNALKLSGVPPEEQRIVFFGAGSA-AIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKV  356 (559)
T ss_pred             HHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHH
Confidence            3456778899999999999999999999988 9999998873    676       58888543                


Q ss_pred             -------------CCCHHhhccCC--CEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976          114 -------------TKNPEQITSEA--DIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  156 (216)
Q Consensus       114 -------------t~~l~~~~~~A--DIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~  156 (216)
                                   ..+|.+.++.+  |++|-+++.|+.+++++++      +.-+|+=++ ||.
T Consensus       357 ~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLS-NPt  419 (559)
T PTZ00317        357 PFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLS-NPT  419 (559)
T ss_pred             HHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                         01577888888  9999999888888888875      355777776 554

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.68  E-value=0.0033  Score=55.46  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=53.9

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------C---HHhhccCCCEEEEecCCCC---ccc--C
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------N---PEQITSEADIVIAAAGVAN---LVR--G  139 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~---l~~~~~~ADIVIsatg~p~---~i~--~  139 (216)
                      +|.+||.|.+ |.+++..|++.|.+|++.+++..              +   +.+.++++|+||.+++...   .+.  .
T Consensus         2 ~Ig~IGlG~m-G~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~   80 (298)
T TIGR00872         2 QLGLIGLGRM-GANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA   80 (298)
T ss_pred             EEEEEcchHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence            6899999876 99999999999999999988631              2   2234567899999988652   111  1


Q ss_pred             CcccCCcEEEEeeeC
Q 027976          140 SWLKPGAVVLDVGTC  154 (216)
Q Consensus       140 ~~i~~g~vViDvg~~  154 (216)
                      ..+++|.+|||++..
T Consensus        81 ~~l~~g~ivid~st~   95 (298)
T TIGR00872        81 PTLEKGDIVIDGGNS   95 (298)
T ss_pred             hhCCCCCEEEECCCC
Confidence            346788999998755

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK06398 aldose dehydrogenase; Validated

Probab=96.65  E-value=0.0067  Score=51.63  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~   39 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK   39 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            5789999999999889999999999999998887664

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.63  E-value=0.0056  Score=54.76  Aligned_cols=56  Identities=20%  Similarity=0.245  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p  134 (216)
                      ++||++.|||.|.. |.+++..|.+.|.+|++..+..              .+..+.+++||+|+.+++-.
T Consensus         1 l~~kkIgiIG~G~m-G~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~   70 (314)
T TIGR00465         1 LKGKTVAIIGYGSQ-GHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDE   70 (314)
T ss_pred             CCcCEEEEEeEcHH-HHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcH
Confidence            57999999999886 9999999999998876654321              13456789999999999843

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.63  E-value=0.0043  Score=57.83  Aligned_cols=123  Identities=21%  Similarity=0.152  Sum_probs=71.6

Q ss_pred             CCCCeEEEEcCCchhHHH-HHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCccc-CCcEEEEeeeCC
Q 027976           78 IMGKNAVVIGRSNIVGLP-TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGTCP  155 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~-~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~-~g~vViDvg~~~  155 (216)
                      .++|+++|+|.|++ |++ +|++|.++|++|++++.......+.+++..+.+.. |.+    ++.+. .+.+|+--++++
T Consensus         5 ~~~~~v~viG~G~s-G~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~-~~~----~~~~~~~d~vv~spgi~~   78 (461)
T PRK00421          5 RRIKRIHFVGIGGI-GMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFI-GHD----AENIKDADVVVYSSAIPD   78 (461)
T ss_pred             CCCCEEEEEEEchh-hHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeC-CCC----HHHCCCCCEEEECCCCCC
Confidence            46789999999998 999 79999999999999986543222223333333321 211    11221 234555555544


Q ss_pred             ccCCCCCCCCCCCeEecccChHH-Hhh--HcceecccCCcccHHHHHHHHHHHHHHH
Q 027976          156 VDVSVDPSCEYGYRLMGDVCYEE-AMR--LASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       156 ~~~~~~~~~~~~~~l~GDvd~~~-~~~--~~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      ...........+-+++++.++-. ..+  +.-+   |-|=-|.=|+..|+.++++..
T Consensus        79 ~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~---ITGTnGKTTTt~ll~~iL~~~  132 (461)
T PRK00421         79 DNPELVAARELGIPVVRRAEMLAELMRFRTSIA---VAGTHGKTTTTSLLAHVLAEA  132 (461)
T ss_pred             CCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEE---EECCCCHHHHHHHHHHHHHhc
Confidence            31000000011236788877632 211  2233   446789999999999998764

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.004  Score=52.36  Aligned_cols=38  Identities=26%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~   42 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRR   42 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998889999999999999999888765

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.62  E-value=0.0066  Score=53.51  Aligned_cols=72  Identities=19%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccC---CCEEEEecCCCCc----cc--
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSE---ADIVIAAAGVANL----VR--  138 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~---ADIVIsatg~p~~----i~--  138 (216)
                      +|.+||.|.+ |.+++..|++.|.+|++++++.              .+..+..+.   +|+||.+++....    +.  
T Consensus         2 ~Ig~IGlG~M-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l   80 (301)
T PRK09599          2 QLGMIGLGRM-GGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL   80 (301)
T ss_pred             EEEEEcccHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence            6899999876 9999999999999999998863              134444443   6999999986531    11  


Q ss_pred             CCcccCCcEEEEeeeC
Q 027976          139 GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       139 ~~~i~~g~vViDvg~~  154 (216)
                      .+.++++.++||++..
T Consensus        81 ~~~l~~g~ivid~st~   96 (301)
T PRK09599         81 APLLSPGDIVIDGGNS   96 (301)
T ss_pred             HhhCCCCCEEEeCCCC
Confidence            1346778999998654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.60  E-value=0.0063  Score=53.23  Aligned_cols=71  Identities=20%  Similarity=0.228  Sum_probs=51.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------------------------CCHHhhc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------------KNPEQIT  121 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------------------~~l~~~~  121 (216)
                      ++|.|||+|-. |.++|..|+..|.+|+++.++.                                       .++.+.+
T Consensus         4 ~kIaViGaG~m-G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVL-GSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            57999999875 9999999999999999996531                                       2345678


Q ss_pred             cCCCEEEEecCCCCcccC-------CcccCCcEEEEee
Q 027976          122 SEADIVIAAAGVANLVRG-------SWLKPGAVVLDVG  152 (216)
Q Consensus       122 ~~ADIVIsatg~p~~i~~-------~~i~~g~vViDvg  152 (216)
                      ++||+||.|++...-+..       +.+++++++.+..
T Consensus        83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~snt  120 (287)
T PRK08293         83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNS  120 (287)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECc
Confidence            899999999985321111       2345667665543

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.59  E-value=0.0047  Score=51.70  Aligned_cols=35  Identities=14%  Similarity=0.246  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      .|+.++|+|+|+|+. |..++..|+..|. ++++++.
T Consensus        18 ~L~~~~V~IvG~Ggl-Gs~ia~~La~~Gvg~i~lvD~   53 (200)
T TIGR02354        18 KLEQATVAICGLGGL-GSNVAINLARAGIGKLILVDF   53 (200)
T ss_pred             HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEECC
Confidence            367899999999996 9999999999998 6998844

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.59  E-value=0.0074  Score=51.52  Aligned_cols=53  Identities=21%  Similarity=0.273  Sum_probs=44.0

Q ss_pred             cCCCcHHHHHHHHH----HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEE-EEeC
Q 027976           59 FIPCTPKGCIELLI----RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHA  112 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~----~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~  112 (216)
                      ..|.|++|+...++    +.+.++++++++|.|.|. ||+.++..|.+.|++|+ ++.+
T Consensus         6 ~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~-VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076           6 REEATGRGVAYATREALKKLGIGLAGARVAIQGFGN-VGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECC
Confidence            46789999876665    456779999999999987 59999999999999966 7765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=96.57  E-value=0.015  Score=51.67  Aligned_cols=78  Identities=21%  Similarity=0.219  Sum_probs=65.0

Q ss_pred             CCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976           55 REPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------------------  113 (216)
Q Consensus        55 ~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------------------  113 (216)
                      .++-+.||-..|=+.-++++.-.++|++++-+|-|+.|+..+....+..|.+++++...                     
T Consensus       128 LtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~  207 (310)
T COG0078         128 LTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGG  207 (310)
T ss_pred             cccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCC
Confidence            46788999999966666666555999999999999999999999999999999998443                     


Q ss_pred             ----CCCHHhhccCCCEEEEecC
Q 027976          114 ----TKNPEQITSEADIVIAAAG  132 (216)
Q Consensus       114 ----t~~l~~~~~~ADIVIsatg  132 (216)
                          +.+..++++.||+|.+-+=
T Consensus       208 ~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         208 KITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             eEEEecCHHHHhCCCCEEEecCc
Confidence                3477899999999997664

>PLN02688 pyrroline-5-carboxylate reductase

Probab=96.56  E-value=0.0067  Score=52.15  Aligned_cols=68  Identities=13%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC----EEEEE-eCCC--------------CCHHhhccCCCEEEEecCCCCc----cc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA----TVSIV-HALT--------------KNPEQITSEADIVIAAAGVANL----VR  138 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga----~Vti~-~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i~  138 (216)
                      +|.+||.|.+ |.+++..|.+.|.    +|+++ +|+.              .+..+.++++|+||.++. |..    +.
T Consensus         2 kI~~IG~G~m-G~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~   79 (266)
T PLN02688          2 RVGFIGAGKM-AEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT   79 (266)
T ss_pred             eEEEECCcHH-HHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence            5899999876 9999999999887    78888 6642              234566788999999994 431    11


Q ss_pred             --CCcccCCcEEEEe
Q 027976          139 --GSWLKPGAVVLDV  151 (216)
Q Consensus       139 --~~~i~~g~vViDv  151 (216)
                        ...++++.+||.+
T Consensus        80 ~l~~~~~~~~~iIs~   94 (266)
T PLN02688         80 ELRPLLSKDKLLVSV   94 (266)
T ss_pred             HHHhhcCCCCEEEEe
Confidence              1234566666655

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.55  E-value=0.0045  Score=51.71  Aligned_cols=35  Identities=26%  Similarity=0.543  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      .+++++|+|+|.|+. |..++..|+..|. ++++++.
T Consensus        18 kl~~~~VlviG~Ggl-Gs~ia~~La~~Gv~~i~lvD~   53 (202)
T TIGR02356        18 RLLNSHVLIIGAGGL-GSPAALYLAGAGVGTIVIVDD   53 (202)
T ss_pred             HhcCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEecC
Confidence            468899999999996 9999999999997 7998854

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.55  E-value=0.0073  Score=52.45  Aligned_cols=70  Identities=19%  Similarity=0.252  Sum_probs=51.6

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC---------------CCHHhhccCCCEEEEecCCCCc------cc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT---------------KNPEQITSEADIVIAAAGVANL------VR  138 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t---------------~~l~~~~~~ADIVIsatg~p~~------i~  138 (216)
                      ++.|||.|.+ |.+++..|.+.|.  +|+.++++.               .+..+ +.++|+||.+++....      +.
T Consensus         2 ~I~iIG~G~m-G~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~aD~Vilavp~~~~~~~~~~l~   79 (275)
T PRK08507          2 KIGIIGLGLM-GGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEE-LKKCDVIFLAIPVDAIIEILPKLL   79 (275)
T ss_pred             EEEEEccCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHH-HhcCCEEEEeCcHHHHHHHHHHHh
Confidence            6899999875 9999999999885  677777642               12334 3459999999985431      22


Q ss_pred             CCcccCCcEEEEeeeCC
Q 027976          139 GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       139 ~~~i~~g~vViDvg~~~  155 (216)
                       . ++++.+|+|++...
T Consensus        80 -~-l~~~~iv~d~gs~k   94 (275)
T PRK08507         80 -D-IKENTTIIDLGSTK   94 (275)
T ss_pred             -c-cCCCCEEEECccch
Confidence             2 67899999998753

>PRK08223 hypothetical protein; Validated

Probab=96.54  E-value=0.006  Score=53.96  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEe
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  111 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  111 (216)
                      .|++++|+|+|+||. |.+++.+|+..|. ++++++
T Consensus        24 kL~~s~VlIvG~GGL-Gs~va~~LA~aGVG~i~lvD   58 (287)
T PRK08223         24 RLRNSRVAIAGLGGV-GGIHLLTLARLGIGKFTIAD   58 (287)
T ss_pred             HHhcCCEEEECCCHH-HHHHHHHHHHhCCCeEEEEe
Confidence            367899999999996 9999999999996 688883

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.53  E-value=0.029  Score=50.68  Aligned_cols=74  Identities=18%  Similarity=0.184  Sum_probs=57.7

Q ss_pred             CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976           57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL---------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~---------------------  113 (216)
                      +...||=+.+ ++.+.++.+.+++|++++++|-+ ..|++.++.+++..|++|+++...                     
T Consensus       132 ~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~  211 (334)
T PRK01713        132 DEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGA  211 (334)
T ss_pred             CCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCC
Confidence            3467888887 45555556557999999999996 447999999999999999988532                     


Q ss_pred             ----CCCHHhhccCCCEEEEe
Q 027976          114 ----TKNPEQITSEADIVIAA  130 (216)
Q Consensus       114 ----t~~l~~~~~~ADIVIsa  130 (216)
                          +.++.+.+++||+|.+-
T Consensus       212 ~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        212 RITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             eEEEEcCHHHHhCCCCEEEEc
Confidence                14567889999999973

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.52  E-value=0.0077  Score=52.96  Aligned_cols=70  Identities=19%  Similarity=0.313  Sum_probs=52.9

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHHhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      +|.|||.|.+ |.+++..|++.|.+|++++++.                            .+..+.++++|+||.+++.
T Consensus         3 kI~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          3 KIAVLGAGSW-GTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             EEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            6999999875 9999999999999999997641                            1334566789999999986


Q ss_pred             CCc---cc--CCcccCCcEEEEee
Q 027976          134 ANL---VR--GSWLKPGAVVLDVG  152 (216)
Q Consensus       134 p~~---i~--~~~i~~g~vViDvg  152 (216)
                      ...   +.  ...++++.+++++.
T Consensus        82 ~~~~~v~~~l~~~~~~~~~vi~~~  105 (325)
T PRK00094         82 QALREVLKQLKPLLPPDAPIVWAT  105 (325)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEEe
Confidence            431   11  12456788999984

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.0073  Score=51.60  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-C---------------------CHHhhccCCCEEEEecCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-K---------------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~---------------------~l~~~~~~ADIVIsatg~  133 (216)
                      .++||+++|.|+++-+|+.++..|+++|++|+++.|+. +                     ++.+...+.|++|+..|.
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~   89 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGI   89 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence            46899999999998889999999999999988876543 1                     122345567888877774

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.0086  Score=50.57  Aligned_cols=38  Identities=29%  Similarity=0.317  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~   42 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARS   42 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998889999999999999998888764

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.49  E-value=0.0081  Score=49.88  Aligned_cols=57  Identities=26%  Similarity=0.353  Sum_probs=44.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------CH----H---hhccCCCEEEEecCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NP----E---QITSEADIVIAAAGV  133 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l----~---~~~~~ADIVIsatg~  133 (216)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.++..            |+    .   +.....|++|+..|.
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~   77 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGI   77 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHHHHHHHHhhCCCCEEEECCCC
Confidence            478999999999998999999999999999988876421            11    1   223457999988774

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.48  E-value=0.0049  Score=53.01  Aligned_cols=34  Identities=12%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      +++++|+|+|.||. |..++..|+..|. ++++++.
T Consensus        22 L~~~~VlvvG~Ggl-Gs~va~~La~~Gvg~i~lvD~   56 (240)
T TIGR02355        22 LKASRVLIVGLGGL-GCAASQYLAAAGVGNLTLLDF   56 (240)
T ss_pred             HhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEEeC
Confidence            67889999999996 9999999999996 6888843

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.47  E-value=0.009  Score=50.69  Aligned_cols=46  Identities=17%  Similarity=0.174  Sum_probs=37.8

Q ss_pred             HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCC
Q 027976           67 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL  113 (216)
Q Consensus        67 ~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~  113 (216)
                      +.+.+++.+.+++|++|+|.|.|. ||+.++..|.++|+. |.++.++
T Consensus        10 ~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~~vV~vsD~~   56 (217)
T cd05211          10 MKAAMKHLGDSLEGLTVAVQGLGN-VGWGLAKKLAEEGGKVLAVSDPD   56 (217)
T ss_pred             HHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEEcCC
Confidence            444556677889999999999987 599999999999985 7777654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.46  E-value=0.0091  Score=54.93  Aligned_cols=71  Identities=28%  Similarity=0.335  Sum_probs=52.6

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------------------------CHHhhccCCCEE
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------------------NPEQITSEADIV  127 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------------------~l~~~~~~ADIV  127 (216)
                      +|.|||.|.+ |.++|..|++.|.+|+.++++.+                                  +..+.++++|+|
T Consensus         2 kI~vIGlG~~-G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         2 KIAVIGLGYV-GLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             EEEEECCCch-hHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            6899999875 99999999999999999976421                                  223457889999


Q ss_pred             EEecCCCCc---------cc------CCcccCCcEEEEeee
Q 027976          128 IAAAGVANL---------VR------GSWLKPGAVVLDVGT  153 (216)
Q Consensus       128 Isatg~p~~---------i~------~~~i~~g~vViDvg~  153 (216)
                      |.+++.|..         +.      ...++++.+|+|.+.
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST  121 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST  121 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence            999997631         11      123467788888764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.44  E-value=0.0059  Score=55.14  Aligned_cols=35  Identities=20%  Similarity=0.372  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      .|++++|+|||.|+. |.+++..|+..|. +++++++
T Consensus        21 ~L~~~~VlIiG~Ggl-Gs~va~~La~aGvg~i~lvD~   56 (338)
T PRK12475         21 KIREKHVLIVGAGAL-GAANAEALVRAGIGKLTIADR   56 (338)
T ss_pred             hhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC
Confidence            468899999999985 9999999999997 7888854

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.44  E-value=0.0073  Score=56.66  Aligned_cols=127  Identities=15%  Similarity=0.155  Sum_probs=70.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCccc-CCcEEEEeeeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGTCP  155 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~-~g~vViDvg~~~  155 (216)
                      .+.+|+|+|+|.|++ |++++.+|.+.|++|++++++.....+.+.+..+-+.. |.-   ..+++. .+.+|+--++++
T Consensus        12 ~~~~~~v~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~-~~~---~~~~~~~~d~vV~Spgi~~   86 (473)
T PRK00141         12 QELSGRVLVAGAGVS-GRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADIS-TAE---ASDQLDSFSLVVTSPGWRP   86 (473)
T ss_pred             cccCCeEEEEccCHH-HHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEe-CCC---chhHhcCCCEEEeCCCCCC
Confidence            467899999999998 99999999999999999987532222222222222211 100   012222 234555445544


Q ss_pred             ccCCCCCCCCCCCeEecccChHHHhh------HcceecccCCcccHHHHHHHHHHHHHH
Q 027976          156 VDVSVDPSCEYGYRLMGDVCYEEAMR------LASVITPVPGGVGPMTVAMLLSNTLDS  208 (216)
Q Consensus       156 ~~~~~~~~~~~~~~l~GDvd~~~~~~------~~~~~tpvpgGvGp~T~amLl~n~~~a  208 (216)
                      ...........+-++.|++++.....      ....+.-|-|=-|.=|+.-|+.++++.
T Consensus        87 ~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~  145 (473)
T PRK00141         87 DSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQE  145 (473)
T ss_pred             CCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence            32000000012336777777532110      011122245778999999999988865

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.43  E-value=0.015  Score=52.34  Aligned_cols=94  Identities=14%  Similarity=0.173  Sum_probs=60.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---------------------HH
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PE  118 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l~  118 (216)
                      ++|....+...+.+....-.|++|+|.|+|+ +|..++.++...|++|+++....+.                     +.
T Consensus       164 l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~  242 (360)
T PLN02586        164 LLCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMK  242 (360)
T ss_pred             hhcchHHHHHHHHHhcccCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHH
Confidence            3444444455555554444799999999976 5999999899999987665332211                     11


Q ss_pred             hhccCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          119 QITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       119 ~~~~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                      +....+|++|.++|.+..+  .-+.++++..++.++..
T Consensus       243 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~  280 (360)
T PLN02586        243 AAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLP  280 (360)
T ss_pred             hhcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCC
Confidence            2223469999999865432  23457788778888754

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.0061  Score=51.75  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++++++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus         2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~   38 (263)
T PRK09072          2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRN   38 (263)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999999998889999999999999999988765

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.41  E-value=0.0036  Score=53.13  Aligned_cols=33  Identities=18%  Similarity=0.420  Sum_probs=29.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEE
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIV  110 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~  110 (216)
                      .+++++|+|+|.|+. |..++..|+..|. +++++
T Consensus        18 ~L~~~~VlivG~Ggl-Gs~va~~La~~Gvg~i~lv   51 (228)
T cd00757          18 KLKNARVLVVGAGGL-GSPAAEYLAAAGVGKLGLV   51 (228)
T ss_pred             HHhCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEE
Confidence            367899999999996 9999999999997 68888

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.36  E-value=0.0099  Score=55.43  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +.+|+|+|+|.|.. |+++|..|+++|++|+++.+.
T Consensus        12 ~~~~~i~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~   46 (458)
T PRK01710         12 IKNKKVAVVGIGVS-NIPLIKFLVKLGAKVTAFDKK   46 (458)
T ss_pred             hcCCeEEEEcccHH-HHHHHHHHHHCCCEEEEECCC
Confidence            56899999999998 999999999999999999865

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.36  E-value=0.0043  Score=52.35  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.+..|+
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~   43 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD   43 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence            5789999999998889999999999999999888765

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.34  E-value=0.013  Score=52.25  Aligned_cols=57  Identities=19%  Similarity=0.281  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCCC-----------------------CHHhhccCCCEEEEecC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK-----------------------NPEQITSEADIVIAAAG  132 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~-----------------------~l~~~~~~ADIVIsatg  132 (216)
                      -.+++|.|||+|. ||..++..|+..+.  ++.+++++.+                       +-.+.+++||+||.+.|
T Consensus         4 ~~~~ki~iiGaG~-vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag   82 (315)
T PRK00066          4 KQHNKVVLVGDGA-VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG   82 (315)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence            3578999999976 69999999998885  5888875421                       12367899999999998


Q ss_pred             CCC
Q 027976          133 VAN  135 (216)
Q Consensus       133 ~p~  135 (216)
                      .|.
T Consensus        83 ~~~   85 (315)
T PRK00066         83 APQ   85 (315)
T ss_pred             CCC
Confidence            753

>PLN02712 arogenate dehydrogenase

Probab=96.34  E-value=0.0097  Score=58.38  Aligned_cols=76  Identities=17%  Similarity=0.230  Sum_probs=55.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhc-cCCCEEEEecCCCC---ccc--
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQIT-SEADIVIAAAGVAN---LVR--  138 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~-~~ADIVIsatg~p~---~i~--  138 (216)
                      -+-+++.|||.|.+ |+.++..|.+.|.+|+++++..             .++.+.+ ++||+||-+++...   .+.  
T Consensus        50 ~~~~kIgIIG~G~m-G~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l  128 (667)
T PLN02712         50 TTQLKIAIIGFGNY-GQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSL  128 (667)
T ss_pred             CCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhh
Confidence            34578999999875 9999999999999998887752             1233433 46999999998432   222  


Q ss_pred             -CCcccCCcEEEEeeeC
Q 027976          139 -GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       139 -~~~i~~g~vViDvg~~  154 (216)
                       ...++++++|+|++.-
T Consensus       129 ~~~~l~~g~iVvDv~Sv  145 (667)
T PLN02712        129 PLQRLKRNTLFVDVLSV  145 (667)
T ss_pred             hhhcCCCCeEEEECCCC
Confidence             2346789999999743

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.0052  Score=51.76  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=34.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++||+++|.|++.-+|++++..|+++|++|.++.|+.
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~   39 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ   39 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            47899999999999999999999999999999987764

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.32  E-value=0.047  Score=49.28  Aligned_cols=73  Identities=15%  Similarity=0.123  Sum_probs=56.7

Q ss_pred             ccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC-----------------------
Q 027976           58 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-----------------------  113 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-----------------------  113 (216)
                      ...||=+.+=+--++++...++|++++++|.+ ..|.++++.++...|++|+++...                       
T Consensus       133 ~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~  212 (331)
T PRK02102        133 EWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKI  212 (331)
T ss_pred             CCChHHHHHHHHHHHHHhCCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeE
Confidence            46788888844445444457999999999997 447999999999999999998532                       


Q ss_pred             --CCCHHhhccCCCEEEEe
Q 027976          114 --TKNPEQITSEADIVIAA  130 (216)
Q Consensus       114 --t~~l~~~~~~ADIVIsa  130 (216)
                        +.++.+++++||+|.+-
T Consensus       213 ~~~~d~~ea~~~aDvvyt~  231 (331)
T PRK02102        213 TITEDPEEAVKGADVIYTD  231 (331)
T ss_pred             EEEcCHHHHhCCCCEEEEc
Confidence              13567889999999974

>PLN02342 ornithine carbamoyltransferase

Probab=96.31  E-value=0.049  Score=49.50  Aligned_cols=73  Identities=19%  Similarity=0.262  Sum_probs=58.3

Q ss_pred             ccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------C
Q 027976           58 LFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------T  114 (216)
Q Consensus        58 ~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------t  114 (216)
                      ...||=+.+ ++.+.++.+ +++|++|+++|-+..+.+.++.++...|++|+++...                      +
T Consensus       172 ~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~  250 (348)
T PLN02342        172 YNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEIT  250 (348)
T ss_pred             CCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEE
Confidence            458888887 444445555 7999999999998889999999999999999998432                      2


Q ss_pred             CCHHhhccCCCEEEEec
Q 027976          115 KNPEQITSEADIVIAAA  131 (216)
Q Consensus       115 ~~l~~~~~~ADIVIsat  131 (216)
                      .++.+.+++||+|.+-+
T Consensus       251 ~d~~eav~~aDVvy~~~  267 (348)
T PLN02342        251 NDPAEAVKGADVVYTDV  267 (348)
T ss_pred             cCHHHHhCCCCEEEECC
Confidence            45678999999999763

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.31  E-value=0.0089  Score=56.32  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +.|++|+|+|.|.. |++++.+|..+|++|+++.+.
T Consensus        10 ~~~~~v~V~G~G~s-G~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         10 LPGAPVLVAGAGVT-GRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             cCCCeEEEEcCCHH-HHHHHHHHHHCCCEEEEEcCC
Confidence            46899999999997 999999999999999998754

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.30  E-value=0.0055  Score=47.83  Aligned_cols=72  Identities=22%  Similarity=0.282  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------CCHHhhccCCCEEEEecCCCCc------c
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEADIVIAAAGVANL------V  137 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~~------i  137 (216)
                      .-+|.|||+|.. |..++.+|.+.|..|.-+.+.+                .++.+.+++||++|-+++-...      +
T Consensus        10 ~l~I~iIGaGrV-G~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~L   88 (127)
T PF10727_consen   10 RLKIGIIGAGRV-GTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQL   88 (127)
T ss_dssp             --EEEEECTSCC-CCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHHH
T ss_pred             ccEEEEECCCHH-HHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHHH
Confidence            357999999885 9999999999999877664432                2345778999999999985321      2


Q ss_pred             -cCCcccCCcEEEEee
Q 027976          138 -RGSWLKPGAVVLDVG  152 (216)
Q Consensus       138 -~~~~i~~g~vViDvg  152 (216)
                       ....++++.+|+=++
T Consensus        89 a~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   89 AQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HCC--S-TT-EEEES-
T ss_pred             HHhccCCCCcEEEECC
Confidence             222356788887765

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.30  E-value=0.0073  Score=51.38  Aligned_cols=52  Identities=23%  Similarity=0.338  Sum_probs=42.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------------------CCHHhh-ccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------KNPEQI-TSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------------~~l~~~-~~~ADIVIsatg~  133 (216)
                      ++++|+|+|.. |+.+|..|.++|.+|++..++.                       +-|+++ +.+||++|.+||.
T Consensus         1 m~iiIiG~G~v-G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~   76 (225)
T COG0569           1 MKIIIIGAGRV-GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN   76 (225)
T ss_pred             CEEEEECCcHH-HHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence            57999999985 9999999999999999886652                       124444 7889999999986

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.30  E-value=0.014  Score=50.87  Aligned_cols=55  Identities=18%  Similarity=0.157  Sum_probs=44.6

Q ss_pred             ccCCCcHHHHHHHHH----HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEE-EEeCC
Q 027976           58 LFIPCTPKGCIELLI----RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL  113 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~----~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~~  113 (216)
                      +--+.|++|+...++    +.+.+++|++|+|-|.|. ||+.++.+|.+.|++|+ |++++
T Consensus        12 gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~e~GakvvaVsD~~   71 (254)
T cd05313          12 IRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGN-VAQYAAEKLLELGAKVVTLSDSK   71 (254)
T ss_pred             CCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCC
Confidence            335778888766554    567889999999999987 59999999999999965 77643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.30  E-value=0.011  Score=54.58  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=34.7

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..+++||+++|.|+++-+|++++..|+++|++|.++.++
T Consensus       173 a~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~  211 (406)
T PRK07424        173 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSN  211 (406)
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            346789999999999999999999999999998888664

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.29  E-value=0.0042  Score=63.49  Aligned_cols=116  Identities=15%  Similarity=0.193  Sum_probs=76.9

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCC-CE-------------EEEEeCCC-----------------------CCHHhhc
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHH-AT-------------VSIVHALT-----------------------KNPEQIT  121 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~g-a~-------------Vti~~~~t-----------------------~~l~~~~  121 (216)
                      +.|+|+|||+|.+ |++.+..|++.. ++             |+++.++.                       +++.+.+
T Consensus       568 ~~~rIlVLGAG~V-G~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v  646 (1042)
T PLN02819        568 KSQNVLILGAGRV-CRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV  646 (1042)
T ss_pred             cCCcEEEECCCHH-HHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence            5789999999885 999999998753 33             88886431                       1244556


Q ss_pred             cCCCEEEEecCCC-Cc-ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHH
Q 027976          122 SEADIVIAAAGVA-NL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVA  199 (216)
Q Consensus       122 ~~ADIVIsatg~p-~~-i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~a  199 (216)
                      +++|+||++++.. |. +-...++.|.-++|..|...+     .    ..+.      +.+++++..-=+-=|.-|--..
T Consensus       647 ~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e-----~----~~L~------e~Ak~AGV~~m~e~GlDPGid~  711 (1042)
T PLN02819        647 SQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEE-----M----SALD------SKAKEAGITILCEMGLDPGIDH  711 (1042)
T ss_pred             cCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHH-----H----HHHH------HHHHHcCCEEEECCccCHHHHH
Confidence            7899999999953 22 455666778778888765432     0    1222      3335555432122257788888


Q ss_pred             HHHHHHHHHHH
Q 027976          200 MLLSNTLDSAK  210 (216)
Q Consensus       200 mLl~n~~~a~~  210 (216)
                      |+..+.+..++
T Consensus       712 ~lA~~~Id~~~  722 (1042)
T PLN02819        712 MMAMKMIDDAH  722 (1042)
T ss_pred             HHHHHHHHhhc
Confidence            98888887763

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=96.29  E-value=0.014  Score=52.52  Aligned_cols=63  Identities=11%  Similarity=0.129  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhccCCCEEEEecCCCCc---c-c--CCcccCCcE
Q 027976           93 GLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGVANL---V-R--GSWLKPGAV  147 (216)
Q Consensus        93 g~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~~ADIVIsatg~p~~---i-~--~~~i~~g~v  147 (216)
                      |+++|..|++.|.+|++.+++.                   .+..+..+++|+||+.++.+.-   + .  .+.+++|++
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaI  111 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAV  111 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCE
Confidence            7899999999999999997642                   2456889999999999997652   2 1  234678999


Q ss_pred             EEEeeeCC
Q 027976          148 VLDVGTCP  155 (216)
Q Consensus       148 ViDvg~~~  155 (216)
                      |||.+...
T Consensus       112 VID~STIs  119 (341)
T TIGR01724       112 ICNTCTVS  119 (341)
T ss_pred             EEECCCCC
Confidence            99998764

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.28  E-value=0.05  Score=49.06  Aligned_cols=73  Identities=10%  Similarity=-0.055  Sum_probs=56.5

Q ss_pred             ccCCCcHHHHHHHHHHh-CCCCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC----------------------
Q 027976           58 LFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL----------------------  113 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~~~-~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~----------------------  113 (216)
                      ...||=+.+=+--++++ ...++|++++++|-+ ..|.+.++.+|...|++|+++...                      
T Consensus       132 ~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~  211 (332)
T PRK04284        132 EDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGK  211 (332)
T ss_pred             CCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCe
Confidence            46788888844444454 347999999999986 457999999999999999988543                      


Q ss_pred             ---CCCHHhhccCCCEEEEe
Q 027976          114 ---TKNPEQITSEADIVIAA  130 (216)
Q Consensus       114 ---t~~l~~~~~~ADIVIsa  130 (216)
                         +.++.+++++||+|.+-
T Consensus       212 ~~~~~d~~ea~~~aDvvy~~  231 (332)
T PRK04284        212 ITITDDIDEGVKGSDVIYTD  231 (332)
T ss_pred             EEEEcCHHHHhCCCCEEEEC
Confidence               13567889999999975

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.28  E-value=0.029  Score=49.90  Aligned_cols=104  Identities=16%  Similarity=0.166  Sum_probs=70.7

Q ss_pred             ccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCC
Q 027976           11 PCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS   89 (216)
Q Consensus        11 ~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~g   89 (216)
                      +|+|.+.-|  .|-...++.+..       .+-.+|.|.      .+...||=+.+ ++.+.++.+ +++|++|+++|-+
T Consensus        96 ~D~iviR~~--~~~~~~~~a~~s-------~vPVINa~~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD~  159 (301)
T TIGR00670        96 SDAIVIRHP--LEGAARLAAEVS-------EVPVINAGD------GSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGDL  159 (301)
T ss_pred             CCEEEEECC--chhHHHHHHhhC-------CCCEEeCCC------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEccC
Confidence            666776654  333333332221       234455431      13467998888 444444454 7999999999997


Q ss_pred             --chhHHHHHHHHHhCCCEEEEEeCC---------------------CCCHHhhccCCCEEEEe
Q 027976           90 --NIVGLPTSLLLQRHHATVSIVHAL---------------------TKNPEQITSEADIVIAA  130 (216)
Q Consensus        90 --g~vg~~~a~~L~~~ga~Vti~~~~---------------------t~~l~~~~~~ADIVIsa  130 (216)
                        +.|.+.++.+++..|++|++++..                     +.++.++++.||+|.+-
T Consensus       160 ~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~  223 (301)
T TIGR00670       160 KYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVT  223 (301)
T ss_pred             CCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence              567999999999999999999543                     24567889999998874

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.27  E-value=0.0033  Score=57.07  Aligned_cols=111  Identities=24%  Similarity=0.317  Sum_probs=67.8

Q ss_pred             EEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHHhhccCCCEEEEecCCCC
Q 027976           83 AVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        83 v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      |+|+|+ |.+|+.++..|++++-  +|++..|+.                         ++|.+.++++|+||+++|...
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~   79 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF   79 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch
Confidence            689999 5569999999998873  789887752                         136788999999999998541


Q ss_pred             -c-ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccC-CcccHHHHHHHHHHHHHHHH
Q 027976          136 -L-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP-GGVGPMTVAMLLSNTLDSAK  210 (216)
Q Consensus       136 -~-i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp-gGvGp~T~amLl~n~~~a~~  210 (216)
                       . +-...++.|.-.+|.++-...     .    .++-     +.+ ++++... ++ =|.-|--..+|...+++.+.
T Consensus        80 ~~~v~~~~i~~g~~yvD~~~~~~~-----~----~~l~-----~~a-~~~g~~~-l~~~G~~PGl~~~~a~~~~~~~~  141 (386)
T PF03435_consen   80 GEPVARACIEAGVHYVDTSYVTEE-----M----LALD-----EEA-KEAGVTA-LPGCGFDPGLSNLLARYAADELD  141 (386)
T ss_dssp             HHHHHHHHHHHT-EEEESS-HHHH-----H----HHCH-----HHH-HHTTSEE-E-S-BTTTBHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCCCeeccchhHHH-----H----HHHH-----HHH-HhhCCEE-EeCcccccchHHHHHHHHHHHhh
Confidence             1 333445668889996651111     0    0111     333 3334322 22 27778888888888877654

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.27  E-value=0.029  Score=50.05  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=58.7

Q ss_pred             CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCC--chhHHHHHHHHHhCCCEEEEEeCC------------CCCHHhhc
Q 027976           57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL------------TKNPEQIT  121 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~------------t~~l~~~~  121 (216)
                      +...||=+.+ ++.+.++.+ +++|++|+++|-+  +.+.+.++.+++..|+++++++..            +.++.+++
T Consensus       133 ~~~HPtQ~LaDl~Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~  211 (305)
T PRK00856        133 SHQHPTQALLDLLTIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVI  211 (305)
T ss_pred             CCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHh
Confidence            3467988888 555555555 6999999999986  567999999999999999998643            24678899


Q ss_pred             cCCCEEEEec
Q 027976          122 SEADIVIAAA  131 (216)
Q Consensus       122 ~~ADIVIsat  131 (216)
                      ++||+|++..
T Consensus       212 ~~aDvvyt~~  221 (305)
T PRK00856        212 EDADVVMMLR  221 (305)
T ss_pred             CCCCEEEECC
Confidence            9999998754

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.27  E-value=0.012  Score=50.86  Aligned_cols=53  Identities=28%  Similarity=0.362  Sum_probs=41.9

Q ss_pred             EEEEcCCchhHHHHHHHHHhCC----CEEEEEeCC-------------------------CCCHHhhccCCCEEEEecCC
Q 027976           83 AVVIGRSNIVGLPTSLLLQRHH----ATVSIVHAL-------------------------TKNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        83 v~ViG~gg~vg~~~a~~L~~~g----a~Vti~~~~-------------------------t~~l~~~~~~ADIVIsatg~  133 (216)
                      +.|||+||.+|..++..|+..+    .++++.+.+                         +.++++.+++||+||.+.|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            5799997778999999998888    578887543                         13457889999999998886


Q ss_pred             CC
Q 027976          134 AN  135 (216)
Q Consensus       134 p~  135 (216)
                      |.
T Consensus        81 ~~   82 (263)
T cd00650          81 GR   82 (263)
T ss_pred             CC
Confidence            53

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.26  E-value=0.0084  Score=51.65  Aligned_cols=34  Identities=21%  Similarity=0.388  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEe
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  111 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  111 (216)
                      .|+.++|+|+|.|+. |..++..|+..|. ++++++
T Consensus        29 ~L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD   63 (245)
T PRK05690         29 KLKAARVLVVGLGGL-GCAASQYLAAAGVGTLTLVD   63 (245)
T ss_pred             HhcCCeEEEECCCHH-HHHHHHHHHHcCCCEEEEEc
Confidence            468899999999986 9999999999996 688883

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.01  Score=51.83  Aligned_cols=40  Identities=28%  Similarity=0.337  Sum_probs=35.2

Q ss_pred             hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ....++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~   73 (293)
T PRK05866         34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARR   73 (293)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            3456789999999998888999999999999999988765

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.25  E-value=0.018  Score=51.45  Aligned_cols=56  Identities=23%  Similarity=0.443  Sum_probs=43.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC--------------------------CCHHhhccCCCEEEEe
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT--------------------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t--------------------------~~l~~~~~~ADIVIsa  130 (216)
                      .+.++|.|||+|. +|..++..|+..| +++.+++.+.                          .++ +.+++||+||.+
T Consensus         3 ~~~~KI~IIGaG~-vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVit   80 (319)
T PTZ00117          3 VKRKKISMIGAGQ-IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVIT   80 (319)
T ss_pred             CCCcEEEEECCCH-HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEEC
Confidence            4678999999966 5999999999888 6787775531                          233 478999999999


Q ss_pred             cCCCC
Q 027976          131 AGVAN  135 (216)
Q Consensus       131 tg~p~  135 (216)
                      .|.|.
T Consensus        81 ag~~~   85 (319)
T PTZ00117         81 AGVQR   85 (319)
T ss_pred             CCCCC
Confidence            97643

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.0074  Score=49.80  Aligned_cols=38  Identities=21%  Similarity=0.251  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .++||+++|.|+++.+|+.++..|+++|++|.++.|+.
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~   41 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA   41 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence            36799999999999999999999999999998887753

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.24  E-value=0.0064  Score=50.22  Aligned_cols=53  Identities=25%  Similarity=0.293  Sum_probs=35.3

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHHhhccCCCE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI  126 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------------~~l~~~~~~ADI  126 (216)
                      .+|.|+|.|-. |.++|..|++.|.+|+-+..+.                                  .+..+.+++||+
T Consensus         1 M~I~ViGlGyv-Gl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv   79 (185)
T PF03721_consen    1 MKIAVIGLGYV-GLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV   79 (185)
T ss_dssp             -EEEEE--STT-HHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred             CEEEEECCCcc-hHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence            47999999875 9999999999999999995431                                  234566888898


Q ss_pred             EEEecCCC
Q 027976          127 VIAAAGVA  134 (216)
Q Consensus       127 VIsatg~p  134 (216)
                      +|-++|.|
T Consensus        80 ~~I~VpTP   87 (185)
T PF03721_consen   80 VFICVPTP   87 (185)
T ss_dssp             EEE----E
T ss_pred             EEEecCCC
Confidence            88888765

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=96.24  E-value=0.033  Score=49.80  Aligned_cols=73  Identities=21%  Similarity=0.236  Sum_probs=57.8

Q ss_pred             ccCCCcHHH-HHHHHHHhCC-CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------
Q 027976           58 LFIPCTPKG-CIELLIRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------  113 (216)
Q Consensus        58 ~~~p~Ta~g-~~~~L~~~~~-~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------  113 (216)
                      ...||=+.+ ++.+.++.+. +++|++++++|.++.|.+.++.++...|++|+++...                      
T Consensus       129 ~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~  208 (311)
T PRK14804        129 MFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSW  208 (311)
T ss_pred             CCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEE
Confidence            468998888 4444455553 6899999999998888999999999999999988642                      


Q ss_pred             CCCHHhhccCCCEEEEe
Q 027976          114 TKNPEQITSEADIVIAA  130 (216)
Q Consensus       114 t~~l~~~~~~ADIVIsa  130 (216)
                      +.++.+.+++||+|.+-
T Consensus       209 ~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        209 EMNLHKAVSHADYVYTD  225 (311)
T ss_pred             EeCHHHHhCCCCEEEee
Confidence            13567888999999873

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.22  E-value=0.006  Score=51.43  Aligned_cols=37  Identities=22%  Similarity=0.280  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~   42 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDIT   42 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence            5789999999999999999999999999999888765

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.22  E-value=0.03  Score=46.66  Aligned_cols=36  Identities=14%  Similarity=0.215  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  113 (216)
                      .+++++|+|+|+|+. |..++..|+..|. ++++++..
T Consensus        18 ~L~~s~VlIiG~ggl-G~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          18 RLRSARILLIGLKGL-GAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHhCcEEEEcCCHH-HHHHHHHHHHcCCCEEEEEECC
Confidence            367899999999995 9999999999997 59999543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.21  E-value=0.033  Score=49.81  Aligned_cols=106  Identities=11%  Similarity=0.009  Sum_probs=71.8

Q ss_pred             CccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCC
Q 027976           10 MPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS   89 (216)
Q Consensus        10 ~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~g   89 (216)
                      ++++|.+.-|  .+-...++.+.+      ..+-++|.|      ..+...||=+.+=+--++++...++|.+++++|-+
T Consensus       101 ~~D~iv~R~~--~~~~~~~~a~~~------~~vPvINag------~g~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~  166 (310)
T PRK13814        101 GVYFFIVRHS--ENETPEQIAKQL------SSGVVINAG------DGNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDI  166 (310)
T ss_pred             CCCEEEEeCC--chhHHHHHHHhC------CCCCeEECC------cCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCC
Confidence            3566666644  333333332222      123455653      24566899888844444444447999999999996


Q ss_pred             --chhHHHHHHHHHhCCC-EEEEEeCC--------------CCCHHhhccCCCEEEE
Q 027976           90 --NIVGLPTSLLLQRHHA-TVSIVHAL--------------TKNPEQITSEADIVIA  129 (216)
Q Consensus        90 --g~vg~~~a~~L~~~ga-~Vti~~~~--------------t~~l~~~~~~ADIVIs  129 (216)
                        +.+++.++.+++..|. +++++...              +.++.+++++||+|.+
T Consensus       167 ~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        167 RHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             CCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence              5679999999999998 89888543              2467899999999986

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.21  E-value=0.0061  Score=51.37  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..++||+++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~   44 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRN   44 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCC
Confidence            45789999999999999999999999999999988775

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.20  E-value=0.014  Score=51.24  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|.|||+|.+ |.++|..|+..|..|++.++.
T Consensus         6 ~~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~   37 (286)
T PRK07819          6 QRVGVVGAGQM-GAGIAEVCARAGVDVLVFETT   37 (286)
T ss_pred             cEEEEEcccHH-HHHHHHHHHhCCCEEEEEECC
Confidence            48999999875 999999999999999999665

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.20  E-value=0.057  Score=48.82  Aligned_cols=74  Identities=12%  Similarity=0.044  Sum_probs=57.1

Q ss_pred             CccCCCcHHH-HHHHHHHhC-CCCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC--------------------
Q 027976           57 PLFIPCTPKG-CIELLIRSG-VEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL--------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~-~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~--------------------  113 (216)
                      +...||=+.+ ++.+.++.+ .+++|.+++.+|-+ ..|.+.++.+++..|++++++...                    
T Consensus       131 ~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g  210 (336)
T PRK03515        131 NEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNG  210 (336)
T ss_pred             CCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC
Confidence            3568988888 555555554 37999999999986 347999999999999999988532                    


Q ss_pred             -----CCCHHhhccCCCEEEEe
Q 027976          114 -----TKNPEQITSEADIVIAA  130 (216)
Q Consensus       114 -----t~~l~~~~~~ADIVIsa  130 (216)
                           +.++.+.+++||+|.+-
T Consensus       211 ~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        211 GNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CeEEEEcCHHHHhCCCCEEEec
Confidence                 14567889999999975

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.19  E-value=0.0091  Score=52.31  Aligned_cols=73  Identities=19%  Similarity=0.232  Sum_probs=51.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC-------------------------------------HHhhccC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-------------------------------------PEQITSE  123 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-------------------------------------l~~~~~~  123 (216)
                      ++|.|||.|.+ |.++|..|+..|.+|++++++.+.                                     -.+.+++
T Consensus         5 ~~V~vIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQM-GSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRD   83 (295)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence            68999999876 999999999999999999764211                                     1145788


Q ss_pred             CCEEEEecCC-CCc----cc--CCcccCCcEEE-EeeeC
Q 027976          124 ADIVIAAAGV-ANL----VR--GSWLKPGAVVL-DVGTC  154 (216)
Q Consensus       124 ADIVIsatg~-p~~----i~--~~~i~~g~vVi-Dvg~~  154 (216)
                      ||+||.++.- +..    +.  .+.++++++++ +.+.-
T Consensus        84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i  122 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI  122 (295)
T ss_pred             CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence            9999999873 221    11  13456676665 55443

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.19  E-value=0.014  Score=51.48  Aligned_cols=53  Identities=25%  Similarity=0.359  Sum_probs=42.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------------------CCHHhhccCCCEE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------KNPEQITSEADIV  127 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------------~~l~~~~~~ADIV  127 (216)
                      ++|.|||+|.+ |.+++..|++.|.+|++++++.                                 .++.+.+++||+|
T Consensus         5 ~~I~vIGaG~m-G~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV   83 (311)
T PRK06130          5 QNLAIIGAGTM-GSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV   83 (311)
T ss_pred             cEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence            67999999875 9999999999999999987532                                 1233557889999


Q ss_pred             EEecCCC
Q 027976          128 IAAAGVA  134 (216)
Q Consensus       128 Isatg~p  134 (216)
                      |.+++..
T Consensus        84 i~av~~~   90 (311)
T PRK06130         84 IEAVPEK   90 (311)
T ss_pred             EEeccCc
Confidence            9999754

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.17  E-value=0.01  Score=49.73  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.|.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~   38 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS   38 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence            5789999999998889999999999999998887664

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.17  E-value=0.015  Score=52.26  Aligned_cols=71  Identities=23%  Similarity=0.281  Sum_probs=54.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------------CCCHHhhccCCCEEEEecC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------TKNPEQITSEADIVIAAAG  132 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------t~~l~~~~~~ADIVIsatg  132 (216)
                      ++|.|+|+|.. |.++|..|++.|..|++-.|+                            +.|+.+.++.||+|+-+++
T Consensus         2 ~kI~ViGaGsw-GTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP   80 (329)
T COG0240           2 MKIAVIGAGSW-GTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP   80 (329)
T ss_pred             ceEEEEcCChH-HHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence            57999999887 999999999999888887442                            2478899999999999998


Q ss_pred             CCCc---cc--CCcccCCcEEEEee
Q 027976          133 VANL---VR--GSWLKPGAVVLDVG  152 (216)
Q Consensus       133 ~p~~---i~--~~~i~~g~vViDvg  152 (216)
                      +..+   ++  ...++++..++-+.
T Consensus        81 s~~~r~v~~~l~~~l~~~~~iv~~s  105 (329)
T COG0240          81 SQALREVLRQLKPLLLKDAIIVSAT  105 (329)
T ss_pred             hHHHHHHHHHHhhhccCCCeEEEEe
Confidence            7432   11  14456677676664

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.17  E-value=0.019  Score=48.70  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~   42 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIH   42 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998889999999999999998887654

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.16  E-value=0.0071  Score=50.45  Aligned_cols=38  Identities=24%  Similarity=0.245  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ++++++++|+|+++.+|+.++..|+++|++|++..|+.
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~   39 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE   39 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46889999999999899999999999999999887764

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.0061  Score=52.18  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~   41 (263)
T PRK08339          4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRN   41 (263)
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998888999999999999999988764

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.15  E-value=0.0099  Score=52.05  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=28.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|.|||+|.+ |.+++..|+..|.+|++++++
T Consensus         4 ~~I~ViGaG~m-G~~iA~~la~~G~~V~l~d~~   35 (291)
T PRK06035          4 KVIGVVGSGVM-GQGIAQVFARTGYDVTIVDVS   35 (291)
T ss_pred             cEEEEECccHH-HHHHHHHHHhcCCeEEEEeCC
Confidence            68999999875 999999999999999999765

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.13  E-value=0.007  Score=50.89  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~   40 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRD   40 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            4789999999999999999999999999998888775

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.13  E-value=0.018  Score=51.69  Aligned_cols=52  Identities=21%  Similarity=0.134  Sum_probs=43.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------------------CCCHHhhccCCCE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------------TKNPEQITSEADI  126 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------------t~~l~~~~~~ADI  126 (216)
                      ++|.|||+|-+ |..+|..++..|.+|++.++.                                  +.++.+.+.+||+
T Consensus         8 ~~VaVIGaG~M-G~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVI-GSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            68999999865 999999999999999999653                                  1245577899999


Q ss_pred             EEEecCC
Q 027976          127 VIAAAGV  133 (216)
Q Consensus       127 VIsatg~  133 (216)
                      ||.+++-
T Consensus        87 ViEavpE   93 (321)
T PRK07066         87 IQESAPE   93 (321)
T ss_pred             EEECCcC
Confidence            9999874

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.12  E-value=0.022  Score=51.01  Aligned_cols=56  Identities=23%  Similarity=0.383  Sum_probs=43.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC--------------------------CCHHhhccCCCEEEEe
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT--------------------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t--------------------------~~l~~~~~~ADIVIsa  130 (216)
                      ++.++|.|||+|. +|..++..++..| +++.+.+.+.                          .++ +.+++||+||.+
T Consensus         4 ~~~~KI~IIGaG~-vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t   81 (321)
T PTZ00082          4 IKRRKISLIGSGN-IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT   81 (321)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence            3557999999977 5999999999888 4777775432                          233 678999999999


Q ss_pred             cCCCC
Q 027976          131 AGVAN  135 (216)
Q Consensus       131 tg~p~  135 (216)
                      .|.|.
T Consensus        82 ag~~~   86 (321)
T PTZ00082         82 AGLTK   86 (321)
T ss_pred             CCCCC
Confidence            88653

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.10  E-value=0.0097  Score=54.27  Aligned_cols=35  Identities=26%  Similarity=0.506  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      .+++++|+|+|+||. |..++..|+..|. ++++++.
T Consensus       132 ~l~~~~VlvvG~GG~-Gs~ia~~La~~Gvg~i~lvD~  167 (376)
T PRK08762        132 RLLEARVLLIGAGGL-GSPAALYLAAAGVGTLGIVDH  167 (376)
T ss_pred             HHhcCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            378999999999996 9999999999997 6888854

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.09  E-value=0.0085  Score=50.82  Aligned_cols=38  Identities=37%  Similarity=0.433  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~   41 (265)
T PRK07062          4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRD   41 (265)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            46789999999999989999999999999999888765

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.09  E-value=0.013  Score=49.50  Aligned_cols=35  Identities=14%  Similarity=0.278  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      .++.++|+|+|+|+. |..++..|+..|. ++++++.
T Consensus        25 ~L~~~~V~ViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~   60 (212)
T PRK08644         25 KLKKAKVGIAGAGGL-GSNIAVALARSGVGNLKLVDF   60 (212)
T ss_pred             HHhCCCEEEECcCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            367899999999996 9999999999997 5888844

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.08  E-value=0.0079  Score=46.64  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=28.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  113 (216)
                      .++|+|+|.|+. |..++..|+..|. ++++++..
T Consensus         2 ~~~v~iiG~G~v-Gs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGV-GSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHH-HHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHhCCCceeecCCc
Confidence            579999999986 9999999999997 69999543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02858 fructose-bisphosphate aldolase

Probab=96.07  E-value=0.012  Score=62.07  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----c-cC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----V-RG  139 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i-~~  139 (216)
                      ..++|-+||-|.+ |.++|..|++.|.+|++.+++.              .+..+..++||+||+.++.+.-    + ..
T Consensus         3 ~~~~IGfIGLG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~   81 (1378)
T PLN02858          3 SAGVVGFVGLDSL-SFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGD   81 (1378)
T ss_pred             CCCeEEEEchhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhch
Confidence            4578999999886 9999999999999999998873              2566788899999999986542    1 11


Q ss_pred             ----CcccCCcEEEEeeeCC
Q 027976          140 ----SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       140 ----~~i~~g~vViDvg~~~  155 (216)
                          +.+++|.++||++...
T Consensus        82 ~g~~~~l~~g~iivd~STi~  101 (1378)
T PLN02858         82 EGAAKGLQKGAVILIRSTIL  101 (1378)
T ss_pred             hhHHhcCCCcCEEEECCCCC
Confidence                2246889999998653

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.0077  Score=50.82  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~   42 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARH   42 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            4789999999998888999999999999999888765

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=96.07  E-value=0.071  Score=47.46  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=69.4

Q ss_pred             ccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCc
Q 027976           11 PCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSN   90 (216)
Q Consensus        11 ~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg   90 (216)
                      +|+|.+.-|  .+-....+.+..       .+-.+|.|       .+...||=+.+=+--++++..+++|++++++|-+.
T Consensus        94 ~D~iviR~~--~~~~~~~~a~~~-------~vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g~l~g~kva~vGD~~  157 (302)
T PRK14805         94 ADAIVARVF--SHSTIEQLAEHG-------SVPVINAL-------CDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDGN  157 (302)
T ss_pred             CCEEEEeCC--ChhHHHHHHHhC-------CCCEEECC-------CCCCChHHHHHHHHHHHHHhCCcCCcEEEEEcCCC
Confidence            677777655  333223322221       23455653       23467888888444444443479999999999988


Q ss_pred             hhHHHHHHHHHhCCCEEEEEeCCC-------------------------CCHHhhccCCCEEEEec
Q 027976           91 IVGLPTSLLLQRHHATVSIVHALT-------------------------KNPEQITSEADIVIAAA  131 (216)
Q Consensus        91 ~vg~~~a~~L~~~ga~Vti~~~~t-------------------------~~l~~~~~~ADIVIsat  131 (216)
                      .|.+.++.+++..|++|+++....                         .++ +.+++||+|.+-+
T Consensus       158 ~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~  222 (302)
T PRK14805        158 NVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT  222 (302)
T ss_pred             ccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence            899999999999999999995321                         232 5688999998744

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.07  E-value=0.015  Score=51.25  Aligned_cols=51  Identities=14%  Similarity=0.068  Sum_probs=42.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------CCHHhhccCCCEEEEecC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg  132 (216)
                      +|+|+|++|.+|+.++..|.++|.+|+.+.|+.                     .++.+.++.+|+||++++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            699999999999999999999999998887642                     124567788899998765

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.06  E-value=0.016  Score=49.12  Aligned_cols=37  Identities=16%  Similarity=0.031  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ...+++++|+|++|.+|+.++..|+++|++|+.+.|+
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~   50 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD   50 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence            4568999999998888999999999999998876553

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.05  E-value=0.083  Score=47.76  Aligned_cols=74  Identities=14%  Similarity=0.053  Sum_probs=56.5

Q ss_pred             ccCCCcHHH-HHHHHHHhCC-CCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976           58 LFIPCTPKG-CIELLIRSGV-EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL---------------------  113 (216)
Q Consensus        58 ~~~p~Ta~g-~~~~L~~~~~-~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~---------------------  113 (216)
                      ...||=+.+ ++.+.++.+. .++|.+++++|-+ ..|.++++.+++..|++|+++...                     
T Consensus       132 ~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~  211 (334)
T PRK12562        132 EFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGG  211 (334)
T ss_pred             CCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCC
Confidence            457887777 4444455543 5899999999985 347999999999999999988532                     


Q ss_pred             ----CCCHHhhccCCCEEEEec
Q 027976          114 ----TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 ----t~~l~~~~~~ADIVIsat  131 (216)
                          +.++.+.+++||+|.+-.
T Consensus       212 ~~~~~~d~~~a~~~aDvvyt~~  233 (334)
T PRK12562        212 KITLTEDIAAGVKGADFIYTDV  233 (334)
T ss_pred             eEEEEcCHHHHhCCCCEEEEcC
Confidence                145678899999999754

>PLN02477 glutamate dehydrogenase

Probab=96.04  E-value=0.019  Score=53.25  Aligned_cols=53  Identities=21%  Similarity=0.285  Sum_probs=44.0

Q ss_pred             CCCcHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEE-EEeCC
Q 027976           60 IPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL  113 (216)
Q Consensus        60 ~p~Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~~  113 (216)
                      .+.|++|+...+    ++.+.+++|++|+|.|.|. ||+.++..|.++|++|+ |+.++
T Consensus       182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGn-VG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        182 EAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGN-VGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             CccchHHHHHHHHHHHHHcCCCccCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEECCC
Confidence            467999876555    4567899999999999987 59999999999999966 77654

>PRK05717 oxidoreductase; Validated

Probab=96.03  E-value=0.0096  Score=50.29  Aligned_cols=39  Identities=21%  Similarity=0.160  Sum_probs=34.5

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ...++||+++|.|+++.+|+.++..|+++|++|.++.+.
T Consensus         5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~   43 (255)
T PRK05717          5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD   43 (255)
T ss_pred             CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC
Confidence            456899999999999889999999999999998887543

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.03  E-value=0.021  Score=47.95  Aligned_cols=68  Identities=21%  Similarity=0.269  Sum_probs=48.4

Q ss_pred             eEEEEc-CCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------------CHHhhccCCCEEEEecCCCC
Q 027976           82 NAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        82 ~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------------~l~~~~~~ADIVIsatg~p~  135 (216)
                      ++.||| .|. +|.+++..|++.|.+|++..|+.+                         +..+.++++|+||.+++...
T Consensus         2 kI~IIGG~G~-mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         2 KIAVLGGTGD-QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             EEEEEcCCCH-HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            689998 565 599999999999999988876531                         22356778999999998653


Q ss_pred             c---cc--CCcccCCcEEEEe
Q 027976          136 L---VR--GSWLKPGAVVLDV  151 (216)
Q Consensus       136 ~---i~--~~~i~~g~vViDv  151 (216)
                      .   +.  ...++ +.+|||+
T Consensus        81 ~~~~l~~l~~~l~-~~vvI~~  100 (219)
T TIGR01915        81 VLKTLESLRDELS-GKLVISP  100 (219)
T ss_pred             HHHHHHHHHHhcc-CCEEEEe
Confidence            2   11  11233 4788887

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.03  E-value=0.017  Score=51.06  Aligned_cols=53  Identities=19%  Similarity=0.233  Sum_probs=43.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------------------------CCHHhhcc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------------KNPEQITS  122 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------------~~l~~~~~  122 (216)
                      ++|.|||+|- +|.+++..|+++|.+|++++++.                                      .++.+.++
T Consensus         3 ~~V~VIG~G~-mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          3 GSVAIIGAGL-IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             cEEEEECccH-HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            4799999876 49999999999999999997652                                      13445678


Q ss_pred             CCCEEEEecCCC
Q 027976          123 EADIVIAAAGVA  134 (216)
Q Consensus       123 ~ADIVIsatg~p  134 (216)
                      ++|+||.+++..
T Consensus        82 ~ad~Vi~avpe~   93 (308)
T PRK06129         82 DADYVQESAPEN   93 (308)
T ss_pred             CCCEEEECCcCC
Confidence            999999998754

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.0086  Score=50.66  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~   40 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLD   40 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999888764

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.03  E-value=0.0084  Score=53.88  Aligned_cols=77  Identities=22%  Similarity=0.234  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCCC---------------CCH-HhhccCCCEEEEecCCCCc--cc
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---------------KNP-EQITSEADIVIAAAGVANL--VR  138 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t---------------~~l-~~~~~~ADIVIsatg~p~~--i~  138 (216)
                      +.+|.|+|++|.+|+-++++|.+++.   ++....+..               .++ ...++++|+||.|+|....  +-
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~   80 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA   80 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH
Confidence            36899999999999999999999764   344443321               011 1234689999999985421  22


Q ss_pred             CCcccCCcEEEEeeeCCc
Q 027976          139 GSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       139 ~~~i~~g~vViDvg~~~~  156 (216)
                      +..++.|++|||++..+.
T Consensus        81 ~~~~~~G~~VIDlS~~~R   98 (334)
T PRK14874         81 PKAAAAGAVVIDNSSAFR   98 (334)
T ss_pred             HHHHhCCCEEEECCchhh
Confidence            334567899999987654

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.011  Score=50.41  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDID   39 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998888999999999999999988765

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.02  E-value=0.052  Score=49.20  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=55.0

Q ss_pred             ccCCCcHHHHHHHHHHhC------CCCCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCC-----------------
Q 027976           58 LFIPCTPKGCIELLIRSG------VEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHAL-----------------  113 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~~~~------~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~-----------------  113 (216)
                      .-+|.++.-.++.|-+..      -.-+|+.++|+|+|+.||..+.+.+...+ +.|+.+.+.                 
T Consensus       130 a~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy  209 (347)
T KOG1198|consen  130 AALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDY  209 (347)
T ss_pred             hcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecC
Confidence            346766666666666655      45689999999999999999999888889 555555333                 


Q ss_pred             -CCCHHhhccC-----CCEEEEecCCCC
Q 027976          114 -TKNPEQITSE-----ADIVIAAAGVAN  135 (216)
Q Consensus       114 -t~~l~~~~~~-----ADIVIsatg~p~  135 (216)
                       +.+..+.+++     -|+|+.++|.+.
T Consensus       210 ~~~~~~e~~kk~~~~~~DvVlD~vg~~~  237 (347)
T KOG1198|consen  210 KDENVVELIKKYTGKGVDVVLDCVGGST  237 (347)
T ss_pred             CCHHHHHHHHhhcCCCccEEEECCCCCc
Confidence             1234444444     799998888753

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.02  E-value=0.016  Score=54.54  Aligned_cols=73  Identities=16%  Similarity=0.245  Sum_probs=53.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHHhhcc---CCCEEEEecCCCCc-
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITS---EADIVIAAAGVANL-  136 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~~---~ADIVIsatg~p~~-  136 (216)
                      .++.|||.|.+ |.++|..|+++|.+|++.+|+.+                    ++++.++   ++|+||..+..+.. 
T Consensus         2 ~~IgvIGLG~M-G~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v   80 (470)
T PTZ00142          2 SDIGLIGLAVM-GQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV   80 (470)
T ss_pred             CEEEEEeEhHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence            36899999876 99999999999999999988631                    2334443   47888877654432 


Q ss_pred             ---cc--CCcccCCcEEEEeeeC
Q 027976          137 ---VR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       137 ---i~--~~~i~~g~vViDvg~~  154 (216)
                         +.  ...+++|.+|||.+..
T Consensus        81 ~~vi~~l~~~L~~g~iIID~gn~  103 (470)
T PTZ00142         81 DETIDNLLPLLEKGDIIIDGGNE  103 (470)
T ss_pred             HHHHHHHHhhCCCCCEEEECCCC
Confidence               11  1346789999999854

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.0079  Score=50.57  Aligned_cols=36  Identities=25%  Similarity=0.238  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~   38 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAART   38 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            578999999999999999999999999999888764

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.99  E-value=0.017  Score=54.10  Aligned_cols=123  Identities=18%  Similarity=0.142  Sum_probs=66.7

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCC-CEEEEecCCCCcccCCcc-cCCcEEEEeeeCCc
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA-DIVIAAAGVANLVRGSWL-KPGAVVLDVGTCPV  156 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~A-DIVIsatg~p~~i~~~~i-~~g~vViDvg~~~~  156 (216)
                      .||+|+|+|.|.. |++++++|. +|++|++.........+ +.+. +..+  .+. +  +.+.+ ..+.+|+--|+++.
T Consensus         5 ~~~~v~v~G~G~s-G~a~~~~L~-~g~~v~v~D~~~~~~~~-~~~~~~~~~--~~~-~--~~~~~~~~d~vV~SPgI~~~   76 (454)
T PRK01368          5 TKQKIGVFGLGKT-GISVYEELQ-NKYDVIVYDDLKANRDI-FEELYSKNA--IAA-L--SDSRWQNLDKIVLSPGIPLT   76 (454)
T ss_pred             CCCEEEEEeecHH-HHHHHHHHh-CCCEEEEECCCCCchHH-HHhhhcCce--ecc-C--ChhHhhCCCEEEECCCCCCC
Confidence            5899999999998 999999998 59999999854322211 1100 1111  111 0  01111 12345555455442


Q ss_pred             cCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976          157 DVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       157 ~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      ..........+-++++++++-........+.-|-|--|.=|+.-|+.++++..
T Consensus        77 ~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  129 (454)
T PRK01368         77 HEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN  129 (454)
T ss_pred             CHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence            10000000112368888876321111111223557789999999999988763

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=95.99  E-value=0.025  Score=49.52  Aligned_cols=87  Identities=14%  Similarity=-0.015  Sum_probs=55.3

Q ss_pred             HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------CCHHhhc-----
Q 027976           67 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQIT-----  121 (216)
Q Consensus        67 ~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------~~l~~~~-----  121 (216)
                      +...|.+...--.|.+++|.|+++.+|..+++++...|++|+.+.++.                    +++.+.+     
T Consensus       126 A~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~  205 (325)
T TIGR02825       126 AYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASP  205 (325)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCC
Confidence            334443333334789999999877789999999999999876654321                    1222211     


Q ss_pred             cCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976          122 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       122 ~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~  153 (216)
                      +..|+++.++|.+.. -.-++++++..++.+|.
T Consensus       206 ~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       206 DGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             CCeEEEEECCCHHHHHHHHHHhCcCcEEEEecc
Confidence            236888888886532 12345677777777774

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.99  E-value=0.0087  Score=50.05  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~   38 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRD   38 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCC
Confidence            4789999999999999999999999999998887654

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.99  E-value=0.014  Score=52.81  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      .|+.++|+|+|+|+. |.+++..|+..|. ++++++.
T Consensus        21 ~L~~~~VlVvG~Ggl-Gs~va~~La~aGvg~i~lvD~   56 (339)
T PRK07688         21 KLREKHVLIIGAGAL-GTANAEMLVRAGVGKVTIVDR   56 (339)
T ss_pred             HhcCCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            367899999999996 9999999999997 7999854

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.98  E-value=0.013  Score=51.18  Aligned_cols=32  Identities=19%  Similarity=0.129  Sum_probs=28.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|.|||+|.+ |.++|..|+..|.+|++.+++
T Consensus         5 ~kI~vIGaG~m-G~~iA~~la~~G~~V~l~d~~   36 (292)
T PRK07530          5 KKVGVIGAGQM-GNGIAHVCALAGYDVLLNDVS   36 (292)
T ss_pred             CEEEEECCcHH-HHHHHHHHHHCCCeEEEEeCC
Confidence            68999999875 999999999999999999764

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.98  E-value=0.011  Score=50.33  Aligned_cols=35  Identities=29%  Similarity=0.131  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~   37 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRN   37 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999999999999999999999888765

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.97  E-value=0.012  Score=49.90  Aligned_cols=37  Identities=16%  Similarity=0.203  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (262)
T TIGR03325         2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS   38 (262)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            3679999999999888999999999999999888764

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.97  E-value=0.035  Score=49.26  Aligned_cols=85  Identities=15%  Similarity=0.199  Sum_probs=57.2

Q ss_pred             HHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHHhhcc---CC
Q 027976           68 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQITS---EA  124 (216)
Q Consensus        68 ~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~~~~~---~A  124 (216)
                      ...+++.+. ..|++|+|.|+|+ +|..++.++...|+ +|+++.+..                   .++.+..+   ..
T Consensus       159 ~~al~~~~~-~~g~~VlV~G~G~-vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~  236 (343)
T PRK09880        159 IHAAHQAGD-LQGKRVFVSGVGP-IGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYF  236 (343)
T ss_pred             HHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCC
Confidence            344544433 4799999999865 69999988888998 476664431                   12222222   27


Q ss_pred             CEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          125 DIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       125 DIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                      |++|.++|.+..+  .-+.++++-.++.+|..
T Consensus       237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        237 DVSFEVSGHPSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             CEEEECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence            9999999976432  23557888888888864

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.96  E-value=0.017  Score=54.85  Aligned_cols=73  Identities=19%  Similarity=0.295  Sum_probs=55.5

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhcc---CCCEEEEecCCCCcc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITS---EADIVIAAAGVANLV  137 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~---~ADIVIsatg~p~~i  137 (216)
                      +|-+||-|.+ |+++|..|+++|.+|+++||+.+                     ++.+.++   ++|+||..++.+..+
T Consensus         8 ~IG~IGLG~M-G~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          8 RIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CEEEEeeHHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            6999999876 99999999999999999998631                     1223444   399999998866532


Q ss_pred             c------CCcccCCcEEEEeeeCC
Q 027976          138 R------GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       138 ~------~~~i~~g~vViDvg~~~  155 (216)
                      .      ...+++|.++||.+...
T Consensus        87 ~~Vi~gl~~~l~~G~iiID~sT~~  110 (493)
T PLN02350         87 DQTIKALSEYMEPGDCIIDGGNEW  110 (493)
T ss_pred             HHHHHHHHhhcCCCCEEEECCCCC
Confidence            1      13367899999998764

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.013  Score=49.33  Aligned_cols=39  Identities=23%  Similarity=0.248  Sum_probs=34.4

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++++||+++|.|+++.+|+.++..|+++|++|.++.+.
T Consensus         2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~   40 (258)
T PRK08628          2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRS   40 (258)
T ss_pred             CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCC
Confidence            357899999999999989999999999999998777554

>PRK06182 short chain dehydrogenase; Validated

Probab=95.96  E-value=0.016  Score=49.48  Aligned_cols=35  Identities=29%  Similarity=0.139  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~   36 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARR   36 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999998888999999999999999888664

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.96  E-value=0.014  Score=52.96  Aligned_cols=35  Identities=23%  Similarity=0.469  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      .|++++|+|+|.||. |.+++..|+..|. ++++++.
T Consensus        25 ~L~~~~VlivG~GGl-Gs~~a~~La~~Gvg~i~lvD~   60 (355)
T PRK05597         25 SLFDAKVAVIGAGGL-GSPALLYLAGAGVGHITIIDD   60 (355)
T ss_pred             HHhCCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            367899999999996 9999999999996 6888843

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.95  E-value=0.01  Score=50.46  Aligned_cols=39  Identities=21%  Similarity=0.217  Sum_probs=34.9

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..++++|+++|.|+++.+|+.++..|+++|++|.+..+.
T Consensus         5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~   43 (265)
T PRK07097          5 LFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDIN   43 (265)
T ss_pred             ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            356899999999999999999999999999998888665

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=95.94  E-value=0.03  Score=49.08  Aligned_cols=36  Identities=25%  Similarity=0.023  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+||+|+|.|++|.+|+.++..|+++|.+|+.+.|+
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD   38 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            468999999999999999999999999998866543

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.94  E-value=0.015  Score=53.24  Aligned_cols=35  Identities=20%  Similarity=0.419  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      .+++++|+|+|+||. |.+++..|+..|. ++++++.
T Consensus        38 ~l~~~~VliiG~Ggl-G~~v~~~La~~Gvg~i~ivD~   73 (370)
T PRK05600         38 RLHNARVLVIGAGGL-GCPAMQSLASAGVGTITLIDD   73 (370)
T ss_pred             HhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEeC
Confidence            478899999999996 9999999999996 7999843

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.94  E-value=0.013  Score=49.38  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++++++|+|+++.+|+.++..|+++|++|+++.|+
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~   44 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVS   44 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999998888764

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.94  E-value=0.014  Score=48.79  Aligned_cols=52  Identities=13%  Similarity=0.050  Sum_probs=43.3

Q ss_pred             EEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------------------CCHHhhccCCCEEEEecCCC
Q 027976           83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------KNPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        83 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------------~~l~~~~~~ADIVIsatg~p  134 (216)
                      |+|+|+.|.+|++++..|+..+.+|+++.|+.                       +.|.+.++.+|.||..++..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            68999988899999999999999999998863                       13567788899999888843

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.011  Score=50.04  Aligned_cols=36  Identities=31%  Similarity=0.353  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||+++|+|+++.+|+.++..|+++|++|.++.++
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~   40 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDID   40 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            689999999998889999999999999999888765

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.92  E-value=0.018  Score=48.70  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999998888654

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.91  E-value=0.017  Score=48.58  Aligned_cols=38  Identities=26%  Similarity=0.376  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|.
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~   48 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRS   48 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999998889999999999999999888765

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=95.91  E-value=0.026  Score=49.45  Aligned_cols=34  Identities=24%  Similarity=0.110  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .||+++|.|++|.+|+.++..|+++|++|+++.+
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r   37 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVR   37 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEc
Confidence            4799999999999999999999999999877643

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=95.90  E-value=0.052  Score=49.10  Aligned_cols=73  Identities=12%  Similarity=0.160  Sum_probs=58.0

Q ss_pred             ccCCCcHHH-HHHHHHHhC--CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976           58 LFIPCTPKG-CIELLIRSG--VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------------------  113 (216)
Q Consensus        58 ~~~p~Ta~g-~~~~L~~~~--~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------------------  113 (216)
                      ...||=+.+ ++.+.++.+  .+++|++|+++|-+..|.+.++.++...|++|+++...                     
T Consensus       129 ~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~  208 (338)
T PRK02255        129 YNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGG  208 (338)
T ss_pred             CCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCC
Confidence            458988887 444445554  36999999999998888999999999999999998532                     


Q ss_pred             ----CCCHHhhccCCCEEEEe
Q 027976          114 ----TKNPEQITSEADIVIAA  130 (216)
Q Consensus       114 ----t~~l~~~~~~ADIVIsa  130 (216)
                          +.++.+.+++||+|.+-
T Consensus       209 ~~~~~~d~~eav~~aDvvy~~  229 (338)
T PRK02255        209 SVLVTDDVDEAVKDADFVYTD  229 (338)
T ss_pred             eEEEEcCHHHHhCCCCEEEEc
Confidence                24667899999999973

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.89  E-value=0.011  Score=55.70  Aligned_cols=71  Identities=20%  Similarity=0.273  Sum_probs=52.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------CHHh---hccCCCEEEEecCCCCc---
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQ---ITSEADIVIAAAGVANL---  136 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~---~~~~ADIVIsatg~p~~---  136 (216)
                      ++.+||.|.+ |.++|..|++.|.+|++.+|+.+                   ++.+   .++++|+||..++.+..   
T Consensus         1 ~IG~IGLG~M-G~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~   79 (467)
T TIGR00873         1 DIGVIGLAVM-GSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA   79 (467)
T ss_pred             CEEEEeeHHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence            3789999886 99999999999999999988631                   1222   23468999988876432   


Q ss_pred             -cc--CCcccCCcEEEEeee
Q 027976          137 -VR--GSWLKPGAVVLDVGT  153 (216)
Q Consensus       137 -i~--~~~i~~g~vViDvg~  153 (216)
                       +.  ...+++|.+|||.+.
T Consensus        80 Vi~~l~~~L~~g~iIID~gn   99 (467)
T TIGR00873        80 VINQLLPLLEKGDIIIDGGN   99 (467)
T ss_pred             HHHHHHhhCCCCCEEEECCC
Confidence             21  134678999999985

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.88  E-value=0.022  Score=53.39  Aligned_cols=128  Identities=20%  Similarity=0.248  Sum_probs=70.5

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH--HhhccCCCEEEEecCCCCcccCCcccC-CcEEEEeeeC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--EQITSEADIVIAAAGVANLVRGSWLKP-GAVVLDVGTC  154 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l--~~~~~~ADIVIsatg~p~~i~~~~i~~-g~vViDvg~~  154 (216)
                      +.+|+|+|+|-|.. |+++++.|.++|+.|++++.++...  ........-+=...|. +..  +++.. ..+|..=|++
T Consensus         5 ~~~~kv~V~GLG~s-G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~-~~~--~~~~~~d~vV~SPGi~   80 (448)
T COG0771           5 FQGKKVLVLGLGKS-GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS-HDD--EDLAEFDLVVKSPGIP   80 (448)
T ss_pred             ccCCEEEEEecccc-cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCc-cch--hccccCCEEEECCCCC
Confidence            45999999999998 9999999999999999998554320  0000000111011111 111  23322 4555555555


Q ss_pred             CccCCCCCCCCCCCeEecccChHHHhh-HcceecccCCcccHHHHHHHHHHHHHHHH
Q 027976          155 PVDVSVDPSCEYGYRLMGDVCYEEAMR-LASVITPVPGGVGPMTVAMLLSNTLDSAK  210 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~l~GDvd~~~~~~-~~~~~tpvpgGvGp~T~amLl~n~~~a~~  210 (216)
                      +....+......|-++.||++...-.. .+-.+ -+-|==|.=|+.-|+.+++++.-
T Consensus        81 ~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~v-aITGTNGKTTTTsli~~~l~~~G  136 (448)
T COG0771          81 PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIV-AITGTNGKTTTTSLIAHLLKAAG  136 (448)
T ss_pred             CCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEE-EEECCCchHHHHHHHHHHHHhcC
Confidence            432000000012346889987432210 11111 23355688899999999988754

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.88  E-value=0.025  Score=47.33  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++++|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~   41 (252)
T PRK08220          4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA   41 (252)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            35789999999999888999999999999998888654

>PRK14031 glutamate dehydrogenase; Provisional

Probab=95.87  E-value=0.023  Score=53.19  Aligned_cols=52  Identities=25%  Similarity=0.211  Sum_probs=43.3

Q ss_pred             cCCCcHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEE-Ee
Q 027976           59 FIPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI-VH  111 (216)
Q Consensus        59 ~~p~Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti-~~  111 (216)
                      --+.|++|+...+    ++.+.+++|++|+|.|.|. ||..+|..|.+.||+|+. +.
T Consensus       203 r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGN-VG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        203 RPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGN-VAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             CCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEC
Confidence            3578999976555    4568899999999999987 599999999999999766 44

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.86  E-value=0.017  Score=51.21  Aligned_cols=56  Identities=16%  Similarity=0.127  Sum_probs=42.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCCCC-------------------------CHHhhccCCCEEEEe
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTK-------------------------NPEQITSEADIVIAA  130 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t~-------------------------~l~~~~~~ADIVIsa  130 (216)
                      ++||+++|.|++|.+|+.++..|+++|  ++|+++.+...                         ++.+.+++.|+||+.
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~   81 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA   81 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence            478999999999999999999999886  67887754321                         234456678888877


Q ss_pred             cCC
Q 027976          131 AGV  133 (216)
Q Consensus       131 tg~  133 (216)
                      .|.
T Consensus        82 Ag~   84 (324)
T TIGR03589        82 AAL   84 (324)
T ss_pred             ccc
Confidence            764

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK09186 flagellin modification protein A; Provisional

Probab=95.86  E-value=0.012  Score=49.33  Aligned_cols=36  Identities=14%  Similarity=0.214  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~   37 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADID   37 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecC
Confidence            578999999999889999999999999998888654

>PRK09242 tropinone reductase; Provisional

Probab=95.85  E-value=0.01  Score=50.15  Aligned_cols=38  Identities=26%  Similarity=0.253  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~   42 (257)
T PRK09242          5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARD   42 (257)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            45789999999998888999999999999999888664

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.85  E-value=0.027  Score=48.59  Aligned_cols=92  Identities=17%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCCC-----------------CH----H
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTK-----------------NP----E  118 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t~-----------------~l----~  118 (216)
                      +|....+...+++... ..|++|+|+|+|. +|..+++++...|++ |+++.+..+                 +.    .
T Consensus       103 ~~~~~ta~~al~~~~~-~~g~~VlV~G~G~-vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~  180 (280)
T TIGR03366       103 GCATATVMAALEAAGD-LKGRRVLVVGAGM-LGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQG  180 (280)
T ss_pred             hhHHHHHHHHHHhccC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHH
Confidence            3433334455555443 4899999999976 699999888889986 776643311                 11    1


Q ss_pred             hhc--cCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          119 QIT--SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       119 ~~~--~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                      +..  +.+|++|.++|.+..+  --+.++++..++.++..
T Consensus       181 ~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       181 GLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             HHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccC
Confidence            111  2479999999876533  23567888888888853

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.84  E-value=0.016  Score=49.72  Aligned_cols=70  Identities=20%  Similarity=0.246  Sum_probs=49.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCE---EEEEeCCC----------------CCHHhhccCCCEEEEecCCCC---cccC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHAT---VSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVRG  139 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~---Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~---~i~~  139 (216)
                      ++.+||.|.+ |.+++..|.+.|..   +.+++|+.                .+..+.++++|+||.+++...   .+..
T Consensus         2 ~IgiIG~G~m-G~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~   80 (258)
T PRK06476          2 KIGFIGTGAI-TEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRA   80 (258)
T ss_pred             eEEEECcCHH-HHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence            5899999886 99999999988743   56776541                234456788999999998322   1222


Q ss_pred             CcccCCcEEEEee
Q 027976          140 SWLKPGAVVLDVG  152 (216)
Q Consensus       140 ~~i~~g~vViDvg  152 (216)
                      -+++++.+||++.
T Consensus        81 l~~~~~~~vis~~   93 (258)
T PRK06476         81 LRFRPGQTVISVI   93 (258)
T ss_pred             hccCCCCEEEEEC
Confidence            2356778888765

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.82  E-value=0.014  Score=52.32  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=51.9

Q ss_pred             CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccC--CCEEEEec
Q 027976           62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSE--ADIVIAAA  131 (216)
Q Consensus        62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~--ADIVIsat  131 (216)
                      |...-+...|++++.. .|+++.|+|+|| +|.-..+....+|++|+++.+..+..++++++  ||..|.++
T Consensus       165 CaGITvYspLk~~g~~-pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~  234 (360)
T KOG0023|consen  165 CAGITVYSPLKRSGLG-PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDST  234 (360)
T ss_pred             hcceEEeehhHHcCCC-CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEec
Confidence            5555567889999998 999999999999 59877777888999999998775444555542  55555544

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=95.81  E-value=0.01  Score=55.59  Aligned_cols=55  Identities=24%  Similarity=0.326  Sum_probs=46.0

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhccCCCEEEEecCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      |+||+|+|||.|.. |++-|..|...|.+|++..|..                   .++.+++++||+|+..++-
T Consensus        34 LkgKtIaIIGyGSq-G~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPD  107 (487)
T PRK05225         34 LKGKKIVIVGCGAQ-GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPD  107 (487)
T ss_pred             hCCCEEEEEccCHH-HHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCCh
Confidence            68999999999875 9999998999999988664431                   2467889999999999984

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.81  E-value=0.023  Score=52.78  Aligned_cols=35  Identities=29%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||++.|+|.|+. |+++|.+|.++|++|+++++.
T Consensus         7 ~~~~~i~viG~G~~-G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390          7 FAGKTVAVFGLGGS-GLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEECCC
Confidence            67899999999998 999999999999999999865

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.81  E-value=0.011  Score=52.13  Aligned_cols=38  Identities=32%  Similarity=0.295  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~   47 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRN   47 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999989999999999999999988764

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=95.81  E-value=0.12  Score=46.11  Aligned_cols=72  Identities=22%  Similarity=0.356  Sum_probs=56.5

Q ss_pred             ccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-----------------------
Q 027976           58 LFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-----------------------  113 (216)
Q Consensus        58 ~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-----------------------  113 (216)
                      ...||=+.+ ++.+.++.+ .++|.+|+++|-...+.+.++.+|...|++|++++..                       
T Consensus       126 ~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~  204 (304)
T TIGR00658       126 LFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSV  204 (304)
T ss_pred             CCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeE
Confidence            457887777 444444544 5999999999997778999999999999999999532                       


Q ss_pred             --CCCHHhhccCCCEEEEe
Q 027976          114 --TKNPEQITSEADIVIAA  130 (216)
Q Consensus       114 --t~~l~~~~~~ADIVIsa  130 (216)
                        +.++.+.+++||+|.+-
T Consensus       205 ~~~~d~~~a~~~aDvvy~~  223 (304)
T TIGR00658       205 ELTHDPVEAVKGADVIYTD  223 (304)
T ss_pred             EEEcCHHHHhCCCCEEEEc
Confidence              13567899999999974

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.79  E-value=0.029  Score=52.86  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +.+|+++|+|.|++ |+++|.+|.++|++|+.++..
T Consensus         5 ~~~~~i~v~G~G~s-G~s~a~~L~~~G~~v~~~D~~   39 (498)
T PRK02006          5 LQGPMVLVLGLGES-GLAMARWCARHGARLRVADTR   39 (498)
T ss_pred             cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEEcCC
Confidence            56899999999998 999999999999999999864

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=95.79  E-value=0.035  Score=49.70  Aligned_cols=92  Identities=17%  Similarity=0.217  Sum_probs=59.5

Q ss_pred             CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---------------------HHhh
Q 027976           62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PEQI  120 (216)
Q Consensus        62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l~~~  120 (216)
                      |....+...+...+....|.+++|.|.|. +|..++.++...|++|+++.+..+.                     +.+.
T Consensus       163 ~~~~ta~~al~~~~~~~~g~~vlV~G~G~-vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~  241 (357)
T PLN02514        163 CAGVTVYSPLSHFGLKQSGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEA  241 (357)
T ss_pred             hhHHHHHHHHHHcccCCCCCeEEEEcccH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHh
Confidence            33333444555555545799999999866 5999999999999987666433210                     1122


Q ss_pred             ccCCCEEEEecCCCCccc--CCcccCCcEEEEeeeC
Q 027976          121 TSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       121 ~~~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~  154 (216)
                      ....|++|.++|.+..+.  -+.++++..++.+|..
T Consensus       242 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T PLN02514        242 ADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVI  277 (357)
T ss_pred             cCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCC
Confidence            334699999988653321  2456777778888754

>PLN02858 fructose-bisphosphate aldolase

Probab=95.79  E-value=0.018  Score=60.74  Aligned_cols=74  Identities=18%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----c-cC-
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----V-RG-  139 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i-~~-  139 (216)
                      .++|.+||.|.+ |.+++..|++.|.+|++++++.              .+..+.++++|+||.+++.|..    + .. 
T Consensus       324 ~~~IGfIGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        324 VKRIGFIGLGAM-GFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCeEEEECchHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            478999999886 9999999999999999998763              2455778899999999996542    1 11 


Q ss_pred             ---CcccCCcEEEEeeeC
Q 027976          140 ---SWLKPGAVVLDVGTC  154 (216)
Q Consensus       140 ---~~i~~g~vViDvg~~  154 (216)
                         +.+++|.++||++..
T Consensus       403 g~~~~l~~g~ivVd~STv  420 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTV  420 (1378)
T ss_pred             hHHhcCCCCCEEEECCCC
Confidence               234778999998764

>PRK05872 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.012  Score=51.24  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   42 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLE   42 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998889999999999999999888765

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.78  E-value=0.062  Score=50.12  Aligned_cols=76  Identities=16%  Similarity=0.030  Sum_probs=57.4

Q ss_pred             CccCCCcHHH-HHHHHHHhCC---CCCCCeEEEEcCC--chhHHHHHHHHHhC-CCEEEEEeCC----------------
Q 027976           57 PLFIPCTPKG-CIELLIRSGV---EIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL----------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~---~l~gk~v~ViG~g--g~vg~~~a~~L~~~-ga~Vti~~~~----------------  113 (216)
                      +...||=+.+ ++.+.++.+.   .++|++|+++|.+  +.+.+.++..|+.. |++|+++...                
T Consensus       214 ~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G  293 (429)
T PRK11891        214 PGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNG  293 (429)
T ss_pred             CCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcC
Confidence            4568998888 5555555542   4899999999997  45688888887776 9999888532                


Q ss_pred             -----CCCHHhhccCCCEEEEecC
Q 027976          114 -----TKNPEQITSEADIVIAAAG  132 (216)
Q Consensus       114 -----t~~l~~~~~~ADIVIsatg  132 (216)
                           +.++.+++++||+|++..+
T Consensus       294 ~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        294 HVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             CeEEEEcCHHHHhCCCCEEEEcCc
Confidence                 2467789999999998553

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.013  Score=49.46  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|.+..|+
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~   39 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARR   39 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4679999999999889999999999999998888764

>PRK07680 late competence protein ComER; Validated

Probab=95.77  E-value=0.017  Score=50.11  Aligned_cols=71  Identities=18%  Similarity=0.288  Sum_probs=50.7

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC----EEEEEeCCC----------------CCHHhhccCCCEEEEecCCCC---ccc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA----TVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR  138 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga----~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~---~i~  138 (216)
                      ++.|||+|.+ |.+++..|.+.|.    +|++++|+.                .+..+.++++|+||.++....   .+.
T Consensus         2 ~I~iIG~G~m-G~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~   80 (273)
T PRK07680          2 NIGFIGTGNM-GTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ   80 (273)
T ss_pred             EEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH
Confidence            5899999875 9999999998883    688888752                234456788999999985321   111


Q ss_pred             --CCcccCCcEEEEeee
Q 027976          139 --GSWLKPGAVVLDVGT  153 (216)
Q Consensus       139 --~~~i~~g~vViDvg~  153 (216)
                        ...++++.+|+++.-
T Consensus        81 ~l~~~l~~~~~iis~~a   97 (273)
T PRK07680         81 KLAPHLTDEHCLVSITS   97 (273)
T ss_pred             HHHhhcCCCCEEEEECC
Confidence              124566788888863

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.77  E-value=0.033  Score=42.87  Aligned_cols=50  Identities=22%  Similarity=0.267  Sum_probs=36.2

Q ss_pred             eEEEEcCCchhHHHHHHHHHh-CCCE-EEEEeCCC----------------------CCHHhhccCCCEEEEec
Q 027976           82 NAVVIGRSNIVGLPTSLLLQR-HHAT-VSIVHALT----------------------KNPEQITSEADIVIAAA  131 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~-~ga~-Vti~~~~t----------------------~~l~~~~~~ADIVIsat  131 (216)
                      +|.|+|++|-+|+.++..+.+ .+.+ +-.+.+..                      .++.+.++++|++|..|
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence            689999955569999999988 5676 55555554                      45677777788888777

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.76  E-value=0.021  Score=48.14  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~   39 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYN   39 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            468999999999888999999999999999877644

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.76  E-value=0.036  Score=48.23  Aligned_cols=34  Identities=26%  Similarity=0.159  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      +||+++|.|+.|.+|+.++..|+++|.+|+++.+
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r   36 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVR   36 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEc
Confidence            4789999999999999999999999999877654

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=95.76  E-value=0.041  Score=47.84  Aligned_cols=93  Identities=15%  Similarity=0.003  Sum_probs=57.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhc
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT  121 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~  121 (216)
                      |+....++..|.+....-.|.+++|.|+++.+|..++.++...|++|+.+.+..                   .++.+.+
T Consensus       125 ~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v  204 (329)
T cd08294         125 GMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEAL  204 (329)
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHH
Confidence            333444455554433335789999999877789999999999999876654321                   1222211


Q ss_pred             -----cCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976          122 -----SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       122 -----~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~  153 (216)
                           +..|+++.++|.+.. -.-+.++++..++.++.
T Consensus       205 ~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         205 KEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             HHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcc
Confidence                 236888888876332 12244566666676663

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.74  E-value=0.028  Score=47.51  Aligned_cols=55  Identities=11%  Similarity=0.100  Sum_probs=41.6

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCC---CE-EEEEeCCC----------------CCHHhhccCCCEEEEecCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHH---AT-VSIVHALT----------------KNPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~g---a~-Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p  134 (216)
                      +..++.|||+|.. |++++..|.+.+   .+ ++++++..                .+..+.++++|+||.+++..
T Consensus         3 ~~~kI~iIG~G~m-g~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~   77 (245)
T PRK07634          3 KKHRILFIGAGRM-AEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS   77 (245)
T ss_pred             CCCeEEEECcCHH-HHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH
Confidence            4578999999886 999999998776   23 66676531                24556788999999999853

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.73  E-value=0.016  Score=48.97  Aligned_cols=38  Identities=29%  Similarity=0.334  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++.+|..++..|+++|++|+++.|+
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~   45 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARK   45 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            35789999999999999999999999999999888764

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.015  Score=48.49  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.|+.
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~   40 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ   40 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            47899999999999999999999999999998887754

>PRK07060 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.018  Score=47.90  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++++++++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~   42 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARN   42 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998888999999999999999888775

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.70  E-value=0.029  Score=52.57  Aligned_cols=126  Identities=17%  Similarity=0.189  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-CHH--hhccCCCEEEEecCCCCcccCCccc-CCcEEEEeee
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-NPE--QITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGT  153 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-~l~--~~~~~ADIVIsatg~p~~i~~~~i~-~g~vViDvg~  153 (216)
                      ++||+++|+|.|.. |+++++.|.++|++|++...+.. +..  +.+++ ++.....+.+    .+.+. .+.+|.--|+
T Consensus         6 ~~~~~v~v~G~G~s-G~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~----~~~~~~~d~vV~SpgI   79 (468)
T PRK04690          6 LEGRRVALWGWGRE-GRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEAS----AQRLAAFDVVVKSPGI   79 (468)
T ss_pred             cCCCEEEEEccchh-hHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCC----hHHccCCCEEEECCCC
Confidence            46899999999987 99999999999999999875431 221  12333 3222111211    12222 3455655565


Q ss_pred             CCccCCCCCCCCCCCeEecccChH--HHhhHc---ceecccCCcccHHHHHHHHHHHHHHH
Q 027976          154 CPVDVSVDPSCEYGYRLMGDVCYE--EAMRLA---SVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~GDvd~~--~~~~~~---~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      ++...........+-++++++++.  ...+..   ..+.-|-|--|.=|+.-|+.+++...
T Consensus        80 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         80 SPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             CCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            553200000001123688888751  111100   11223568899999999999988754

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.69  E-value=0.013  Score=50.09  Aligned_cols=38  Identities=29%  Similarity=0.378  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~   43 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRN   43 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998888999999999999999888765

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.014  Score=49.74  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|++++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~   38 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLD   38 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999999999989999999999999998888665

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.68  E-value=0.016  Score=48.68  Aligned_cols=37  Identities=35%  Similarity=0.423  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.|.
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~   40 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLN   40 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence            3679999999999999999999999999998888664

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=95.68  E-value=0.019  Score=48.72  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=33.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|+++.+
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~   40 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN   40 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            3578999999999999999999999999999888754

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.68  E-value=0.014  Score=49.06  Aligned_cols=38  Identities=29%  Similarity=0.357  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++++|+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~   41 (252)
T PRK07035          4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK   41 (252)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999998888765

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.68  E-value=0.034  Score=46.38  Aligned_cols=54  Identities=19%  Similarity=0.137  Sum_probs=44.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------CHHhhccCCCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~~~~~ADIVIsatg~p  134 (216)
                      .++.|||++|-+|.-++.-+.++|.+||-+-|+..                   .+.+.+..-|+||+|.|.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            37899999999999999999999999998877521                   2346778889999999854

>PRK06194 hypothetical protein; Provisional

Probab=95.67  E-value=0.016  Score=49.69  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~   39 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQ   39 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999999889999999999999999888764

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.66  E-value=0.083  Score=43.97  Aligned_cols=94  Identities=28%  Similarity=0.362  Sum_probs=61.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------CHHhh-
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQI-  120 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~~-  120 (216)
                      |+....+...+++...-..|++++|.|+|+ +|+.++.++...|++|+.+.++..                   +..+. 
T Consensus       116 ~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  194 (271)
T cd05188         116 PEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEEL  194 (271)
T ss_pred             cCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHH
Confidence            343444455555555446799999999999 799999999999998877755311                   11111 


Q ss_pred             ----ccCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeCC
Q 027976          121 ----TSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       121 ----~~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~~  155 (216)
                          -+..|++|++++.+..+  ..+.++++..+++++...
T Consensus       195 ~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         195 RLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             HHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCC
Confidence                24579999888863221  234566777788887543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.66  E-value=0.015  Score=49.33  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERS   39 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            679999999999888999999999999999888765

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.65  E-value=0.044  Score=48.10  Aligned_cols=76  Identities=12%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCCCCHH-----------h-hccCCCEEEEecCCCCccc--CCcc
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTKNPE-----------Q-ITSEADIVIAAAGVANLVR--GSWL  142 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t~~l~-----------~-~~~~ADIVIsatg~p~~i~--~~~i  142 (216)
                      ..|++++|+|+|+ ||..+++++...|++ |.++.+....++           + .-..+|++|.++|.+..+.  -+.+
T Consensus       143 ~~~~~vlV~G~G~-vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~l  221 (308)
T TIGR01202       143 VKVLPDLIVGHGT-LGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSLIDTLVRRL  221 (308)
T ss_pred             cCCCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHHHHHHHHHhh
Confidence            4688999999876 599988888889997 545543321111           0 1134799999999875432  2567


Q ss_pred             cCCcEEEEeeeC
Q 027976          143 KPGAVVLDVGTC  154 (216)
Q Consensus       143 ~~g~vViDvg~~  154 (216)
                      +++..++-+|..
T Consensus       222 ~~~G~iv~~G~~  233 (308)
T TIGR01202       222 AKGGEIVLAGFY  233 (308)
T ss_pred             hcCcEEEEEeec
Confidence            887777777754

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.64  E-value=0.017  Score=48.11  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +.+|+++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~   39 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC   39 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999999999999999999998888765

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.64  E-value=0.038  Score=51.17  Aligned_cols=124  Identities=18%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC-HHhhccC--CCEEEEecCCCCcccCCcc-cCCcEEEEeee
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-PEQITSE--ADIVIAAAGVANLVRGSWL-KPGAVVLDVGT  153 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-l~~~~~~--ADIVIsatg~p~~i~~~~i-~~g~vViDvg~  153 (216)
                      +.+|+++|+|.|++ |+++|+.|+++|+.|++.+..... ..+.+++  .-+-+. .|.   .+...+ ..+.+|+--++
T Consensus         3 ~~~~~~~v~G~g~~-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~-~g~---~~~~~~~~~d~vv~spgi   77 (445)
T PRK04308          3 FQNKKILVAGLGGT-GISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFY-TGR---LKDALDNGFDILALSPGI   77 (445)
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEE-eCC---CCHHHHhCCCEEEECCCC
Confidence            57899999999987 999999999999999998764321 1111221  011110 111   000111 12345555555


Q ss_pred             CCccCCCCCCCCCCCeEecccChHH-Hhh----HcceecccCCcccHHHHHHHHHHHHHHH
Q 027976          154 CPVDVSVDPSCEYGYRLMGDVCYEE-AMR----LASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~GDvd~~~-~~~----~~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      +|...........+-+++++.++-. ..+    +.-+   |-|=-|.=|+..|+.+++...
T Consensus        78 ~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~---ITGT~GKTTTt~li~~iL~~~  135 (445)
T PRK04308         78 SERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIA---ITGSNGKTTVTSLVGYLCIKC  135 (445)
T ss_pred             CCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEE---EECCCcHHHHHHHHHHHHHHc
Confidence            4421000000011235666666521 111    2233   446688889999998888653

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.63  E-value=0.032  Score=52.78  Aligned_cols=53  Identities=15%  Similarity=0.086  Sum_probs=43.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHHhhccCCCE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI  126 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------------~~l~~~~~~ADI  126 (216)
                      ++|.|||+|.+ |.++|..|+..|.+|++++++.                                  .++.+.+++||+
T Consensus         5 ~kIavIG~G~M-G~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~   83 (495)
T PRK07531          5 MKAACIGGGVI-GGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW   83 (495)
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence            57999999876 9999999999999999997642                                  234467889999


Q ss_pred             EEEecCCC
Q 027976          127 VIAAAGVA  134 (216)
Q Consensus       127 VIsatg~p  134 (216)
                      ||.+++..
T Consensus        84 Vieavpe~   91 (495)
T PRK07531         84 IQESVPER   91 (495)
T ss_pred             EEEcCcCC
Confidence            99998754

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.014  Score=50.31  Aligned_cols=37  Identities=27%  Similarity=0.344  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~   39 (275)
T PRK05876          3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVD   39 (275)
T ss_pred             CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3689999999999999999999999999998888654

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.015  Score=49.20  Aligned_cols=37  Identities=16%  Similarity=0.279  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~   40 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARD   40 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            4789999999998888999999999999999888765

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.026  Score=47.54  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~   39 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR   39 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999998887664

>cd08293 PTGR2 Prostaglandin reductase

Probab=95.61  E-value=0.043  Score=48.23  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------CCHHhhc-----cCCCEEEEecCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------KNPEQIT-----SEADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------~~l~~~~-----~~ADIVIsatg~  133 (216)
                      |++|+|.|+++.+|..++.++...|+ +|+.+.++.                    .++.+.+     +..|++++++|.
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            38999999977789999988888998 777664431                    1222211     247888888886


Q ss_pred             CCc-ccCCcccCCcEEEEeee
Q 027976          134 ANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       134 p~~-i~~~~i~~g~vViDvg~  153 (216)
                      +.. -.-+.++++..++.+|.
T Consensus       235 ~~~~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         235 EISDTVISQMNENSHIILCGQ  255 (345)
T ss_pred             HHHHHHHHHhccCCEEEEEee
Confidence            532 11244677777777773

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK06196 oxidoreductase; Provisional

Probab=95.61  E-value=0.017  Score=50.78  Aligned_cols=39  Identities=31%  Similarity=0.381  Sum_probs=35.0

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~   59 (315)
T PRK06196         21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARR   59 (315)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            456889999999998888999999999999999888765

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.016  Score=49.31  Aligned_cols=37  Identities=24%  Similarity=0.239  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++++++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~   43 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAART   43 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999888765

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.023  Score=47.50  Aligned_cols=37  Identities=24%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|.+..|.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~   39 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADIN   39 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998888999999999999999988775

>PRK06500 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.016  Score=48.33  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||+++|.|+++.+|+.++..|+++|++|++..|+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~   39 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            578999999999999999999999999998877654

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.60  E-value=0.03  Score=49.95  Aligned_cols=59  Identities=20%  Similarity=0.111  Sum_probs=45.6

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------------CHHhhccCCCEEE
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------NPEQITSEADIVI  128 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------------~l~~~~~~ADIVI  128 (216)
                      +.+-.+++++|.|++|.+|+.++..|+++|++|+++.+...                          .+.+.+++.|.||
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            34567899999999999999999999999999887654310                          1234566789999


Q ss_pred             EecCC
Q 027976          129 AAAGV  133 (216)
Q Consensus       129 satg~  133 (216)
                      ...+.
T Consensus        85 h~A~~   89 (353)
T PLN02896         85 HVAAS   89 (353)
T ss_pred             ECCcc
Confidence            87764

>PRK08264 short chain dehydrogenase; Validated

Probab=95.60  E-value=0.023  Score=47.22  Aligned_cols=38  Identities=24%  Similarity=0.173  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t  114 (216)
                      ++.+++++|+|+++.+|+.++..|+++|+ +|.++.|..
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~   41 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP   41 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence            46789999999988899999999999999 898887753

>PRK09291 short chain dehydrogenase; Provisional

Probab=95.59  E-value=0.027  Score=47.31  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|+++|.|+++-+|+.++..|+++|++|+++.|.
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~   35 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQI   35 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999998887664

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=95.59  E-value=0.03  Score=50.70  Aligned_cols=70  Identities=17%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCC--------CEEEEEeC-----C----------------------------CCCHHhh
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHH--------ATVSIVHA-----L----------------------------TKNPEQI  120 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~g--------a~Vti~~~-----~----------------------------t~~l~~~  120 (216)
                      +|.|||+|.. |.++|..|+..|        .+|++..+     .                            +.++.+.
T Consensus         1 kI~VIGaG~w-GtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea   79 (342)
T TIGR03376         1 RVAVVGSGNW-GTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA   79 (342)
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence            5899999886 999999999988        78888755     1                            1357788


Q ss_pred             ccCCCEEEEecCCCCc---cc--CCcccCCcEEEEee
Q 027976          121 TSEADIVIAAAGVANL---VR--GSWLKPGAVVLDVG  152 (216)
Q Consensus       121 ~~~ADIVIsatg~p~~---i~--~~~i~~g~vViDvg  152 (216)
                      +++||+||-|++...+   +.  ..+++++..++-+.
T Consensus        80 l~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~t  116 (342)
T TIGR03376        80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCI  116 (342)
T ss_pred             HhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEe
Confidence            9999999999986431   11  13456677776663

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02427 UDP-apiose/xylose synthase

Probab=95.59  E-value=0.03  Score=50.60  Aligned_cols=60  Identities=20%  Similarity=0.232  Sum_probs=45.8

Q ss_pred             hCCCCCCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCC----------------------------CCHHhhccCC
Q 027976           74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT----------------------------KNPEQITSEA  124 (216)
Q Consensus        74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t----------------------------~~l~~~~~~A  124 (216)
                      .+..++.++|+|.|+.|.+|+.++..|+++ |.+|..+.+..                            ..+.+.++++
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   87 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA   87 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence            345567789999999999999999999998 48888776431                            0134567789


Q ss_pred             CEEEEecCC
Q 027976          125 DIVIAAAGV  133 (216)
Q Consensus       125 DIVIsatg~  133 (216)
                      |+||...+.
T Consensus        88 d~ViHlAa~   96 (386)
T PLN02427         88 DLTINLAAI   96 (386)
T ss_pred             CEEEEcccc
Confidence            999987763

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.57  E-value=0.021  Score=47.33  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++||+++|.|+++.+|..++..|+++|++|++..|+.
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~   39 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE   39 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            36799999999999999999999999999998887753

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=95.57  E-value=0.022  Score=54.15  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=29.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|.|||+|-+ |.++|..|+..|.+|++.+++
T Consensus         6 ~kV~VIGaG~M-G~gIA~~la~aG~~V~l~d~~   37 (503)
T TIGR02279         6 VTVAVIGAGAM-GAGIAQVAASAGHQVLLYDIR   37 (503)
T ss_pred             cEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCC
Confidence            67999999875 999999999999999999765

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08589 short chain dehydrogenase; Validated

Probab=95.57  E-value=0.018  Score=49.31  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3689999999998888999999999999999888765

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.56  E-value=0.024  Score=48.04  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|++++..|+++|++|.++.+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~   41 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA   41 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCc
Confidence            5789999999999999999999999999999887653

>cd00704 MDH Malate dehydrogenase

Probab=95.56  E-value=0.041  Score=49.35  Aligned_cols=54  Identities=13%  Similarity=0.324  Sum_probs=41.2

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCC-C------EEEEEeCCC--------------------------CCHHhhccCCCEEE
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHH-A------TVSIVHALT--------------------------KNPEQITSEADIVI  128 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~g-a------~Vti~~~~t--------------------------~~l~~~~~~ADIVI  128 (216)
                      +|+|+|++|.||..++..|+..+ +      ++.+.++..                          .+..+.+++||+||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            79999996668999999998766 2      366665432                          13457899999999


Q ss_pred             EecCCCC
Q 027976          129 AAAGVAN  135 (216)
Q Consensus       129 satg~p~  135 (216)
                      .+.|.|.
T Consensus        82 itAG~~~   88 (323)
T cd00704          82 LVGAFPR   88 (323)
T ss_pred             EeCCCCC
Confidence            9998754

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=95.54  E-value=0.024  Score=48.60  Aligned_cols=52  Identities=15%  Similarity=0.172  Sum_probs=42.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------CHHhhccCC--CEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------NPEQITSEA--DIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------~l~~~~~~A--DIVIsatg~  133 (216)
                      +++|+|++|.+|+.++..|.++|.+|+.+.|..-      .+.+.++++  |+||...+.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECCcc
Confidence            4899999888999999999999999998877532      345566655  999988774

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.54  E-value=0.018  Score=48.65  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~   39 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIK   39 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence            678999999999889999999999999998888665

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.54  E-value=0.021  Score=52.41  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCC---------------------CCHH-hhccCCCEEEEecCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT---------------------KNPE-QITSEADIVIAAAGVAN  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t---------------------~~l~-~~~~~ADIVIsatg~p~  135 (216)
                      .-++|.|+|+.|.+|+-+..+|.++ +.+++.+.+..                     .++. ..++++|+|+.|+|...
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~  116 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT  116 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH
Confidence            4569999999999999999999988 57777765431                     0011 22477999999998632


Q ss_pred             ---cccCCcccCCcEEEEeeeCCc
Q 027976          136 ---LVRGSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       136 ---~i~~~~i~~g~vViDvg~~~~  156 (216)
                         +++.  ++.|..|||++...+
T Consensus       117 s~~i~~~--~~~g~~VIDlSs~fR  138 (381)
T PLN02968        117 TQEIIKA--LPKDLKIVDLSADFR  138 (381)
T ss_pred             HHHHHHH--HhCCCEEEEcCchhc
Confidence               2332  357899999986654

>PLN02214 cinnamoyl-CoA reductase

Probab=95.52  E-value=0.041  Score=49.09  Aligned_cols=55  Identities=18%  Similarity=0.077  Sum_probs=43.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------------------CHHhhccCCCEEEE
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------------NPEQITSEADIVIA  129 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------------~l~~~~~~ADIVIs  129 (216)
                      +++|+++|.|++|.+|+.++..|+++|.+|+.+.|..+                            ++.+.++.+|+||.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   87 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH   87 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence            57899999999999999999999999999877654311                            13455677899997


Q ss_pred             ecC
Q 027976          130 AAG  132 (216)
Q Consensus       130 atg  132 (216)
                      ..+
T Consensus        88 ~A~   90 (342)
T PLN02214         88 TAS   90 (342)
T ss_pred             ecC
Confidence            776

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.52  E-value=0.039  Score=45.05  Aligned_cols=30  Identities=20%  Similarity=0.369  Sum_probs=26.0

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      +|+|+|+|+. |..++..|+..|. ++++++.
T Consensus         1 ~VlViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~   31 (174)
T cd01487           1 KVGIAGAGGL-GSNIAVLLARSGVGNLKLVDF   31 (174)
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            5899999986 9999999999997 5888844

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.51  E-value=0.04  Score=49.06  Aligned_cols=77  Identities=27%  Similarity=0.356  Sum_probs=52.9

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC---CC------------------CHH--hhccCCCEEEEecCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---TK------------------NPE--QITSEADIVIAAAGVA  134 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---t~------------------~l~--~~~~~ADIVIsatg~p  134 (216)
                      ..|++|+|+|+|+ +|..++.++...|++|+++.++   .+                  +..  .....+|+||.++|.+
T Consensus       171 ~~g~~vlI~G~G~-vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  249 (355)
T cd08230         171 WNPRRALVLGAGP-IGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP  249 (355)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH
Confidence            4789999999865 5999999899999998887652   10                  110  1123479999999976


Q ss_pred             Cccc--CCcccCCcEEEEeeeCC
Q 027976          135 NLVR--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       135 ~~i~--~~~i~~g~vViDvg~~~  155 (216)
                      ..+.  -+.++++..++-+|...
T Consensus       250 ~~~~~~~~~l~~~G~~v~~G~~~  272 (355)
T cd08230         250 PLAFEALPALAPNGVVILFGVPG  272 (355)
T ss_pred             HHHHHHHHHccCCcEEEEEecCC
Confidence            5332  24467776676666543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.50  E-value=0.02  Score=47.97  Aligned_cols=36  Identities=33%  Similarity=0.433  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~   37 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLN   37 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            578999999999999999999999999998888765

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.48  E-value=0.034  Score=49.47  Aligned_cols=70  Identities=24%  Similarity=0.344  Sum_probs=50.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------------------------CCHHhhccCCCEEEEe
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------------------~~l~~~~~~ADIVIsa  130 (216)
                      .+|.|||+|.. |.+++..|++.|.+|+++.|..                              .+. +.++.+|+||.+
T Consensus         3 mkI~IiG~G~m-G~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~   80 (341)
T PRK08229          3 ARICVLGAGSI-GCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT   80 (341)
T ss_pred             ceEEEECCCHH-HHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence            47999999875 9999999999999999987641                              011 345689999999


Q ss_pred             cCCCCc---cc--CCcccCCcEEEEee
Q 027976          131 AGVANL---VR--GSWLKPGAVVLDVG  152 (216)
Q Consensus       131 tg~p~~---i~--~~~i~~g~vViDvg  152 (216)
                      +..+..   +.  ...++++.+|+++.
T Consensus        81 vk~~~~~~~~~~l~~~~~~~~iii~~~  107 (341)
T PRK08229         81 VKSAATADAAAALAGHARPGAVVVSFQ  107 (341)
T ss_pred             ecCcchHHHHHHHHhhCCCCCEEEEeC
Confidence            876542   11  12346678888873

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=95.48  E-value=0.094  Score=47.83  Aligned_cols=75  Identities=19%  Similarity=0.167  Sum_probs=54.8

Q ss_pred             CccCCCcHHH-HHHHHHHhCC--CCCCCeEEEEcCC-------chhHHHHHHHHHhCCCEEEEEeCC-------------
Q 027976           57 PLFIPCTPKG-CIELLIRSGV--EIMGKNAVVIGRS-------NIVGLPTSLLLQRHHATVSIVHAL-------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~--~l~gk~v~ViG~g-------g~vg~~~a~~L~~~ga~Vti~~~~-------------  113 (216)
                      +.+.||=+.+ ++.+.++.+.  .++|++++++|.|       ..|.+.++.+++..|++|++++..             
T Consensus       144 ~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~  223 (357)
T TIGR03316       144 DIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAK  223 (357)
T ss_pred             CCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHH
Confidence            3468998888 4555455553  3789999999753       256788888899999999998543             


Q ss_pred             ------------CCCHHhhccCCCEEEEec
Q 027976          114 ------------TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 ------------t~~l~~~~~~ADIVIsat  131 (216)
                                  +.++.+.+++||+|.+-+
T Consensus       224 ~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  253 (357)
T TIGR03316       224 KNAAENGGKFNIVNSMDEAFKDADIVYPKS  253 (357)
T ss_pred             HHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence                        135568889999988653

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=95.48  E-value=0.037  Score=49.36  Aligned_cols=55  Identities=24%  Similarity=0.248  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~  133 (216)
                      |+||+|.|||.|.- |++=+..|...|.+|.+-.|..              .+..+++++||+|..-+|-
T Consensus        16 LkgK~iaIIGYGsQ-G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PD   84 (338)
T COG0059          16 LKGKKVAIIGYGSQ-GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPD   84 (338)
T ss_pred             hcCCeEEEEecChH-HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCch
Confidence            68999999999876 9999999999999998887652              2467999999999999884

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=95.47  E-value=0.055  Score=49.86  Aligned_cols=96  Identities=20%  Similarity=0.291  Sum_probs=63.9

Q ss_pred             CCcHHHHHHHHHHh---CCCCCCCeEEEEcCC----------------chhHHHHHHHHHhCCCEEEEEeCCC-------
Q 027976           61 PCTPKGCIELLIRS---GVEIMGKNAVVIGRS----------------NIVGLPTSLLLQRHHATVSIVHALT-------  114 (216)
Q Consensus        61 p~Ta~g~~~~L~~~---~~~l~gk~v~ViG~g----------------g~vg~~~a~~L~~~ga~Vti~~~~t-------  114 (216)
                      ++++.-++..+.+.   +-+++||+++|.|.+                |.+|.++|..|..+|++|+++++..       
T Consensus       163 ~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~  242 (390)
T TIGR00521       163 LAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPG  242 (390)
T ss_pred             CCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCC
Confidence            66777776666543   246899999999983                3359999999999999999987531       


Q ss_pred             ---------CCH-H----hhccCCCEEEEecCCCCccc----CCcccC--CcEEEEeeeCCc
Q 027976          115 ---------KNP-E----QITSEADIVIAAAGVANLVR----GSWLKP--GAVVLDVGTCPV  156 (216)
Q Consensus       115 ---------~~l-~----~~~~~ADIVIsatg~p~~i~----~~~i~~--g~vViDvg~~~~  156 (216)
                               .++ .    +...+.|++|.+.+...+-+    ..-+++  ..+.+.+.-+|+
T Consensus       243 ~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pd  304 (390)
T TIGR00521       243 VKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPD  304 (390)
T ss_pred             cEEEEeccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcH
Confidence                     122 1    23356899999988765421    223444  244566665553

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.46  E-value=0.024  Score=48.39  Aligned_cols=37  Identities=27%  Similarity=0.413  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~   42 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRS   42 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998889999999999999999988764

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=95.46  E-value=0.069  Score=48.47  Aligned_cols=94  Identities=15%  Similarity=0.171  Sum_probs=60.8

Q ss_pred             CCCcHHHHHHHHHHhCCC-CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---------------------H
Q 027976           60 IPCTPKGCIELLIRSGVE-IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------P  117 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~-l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l  117 (216)
                      ++|....+...+.+.... ..|++++|.|+|+ +|..++.++...|++|+++.+..+.                     +
T Consensus       158 l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v  236 (375)
T PLN02178        158 LLCAGITVYSPMKYYGMTKESGKRLGVNGLGG-LGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKM  236 (375)
T ss_pred             hhccchHHHHHHHHhCCCCCCCCEEEEEcccH-HHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHH
Confidence            344444455556555433 3689999999875 5999999999999987666433111                     1


Q ss_pred             HhhccCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          118 EQITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       118 ~~~~~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                      .+....+|++|.++|.+..+  .-+.++++..++.++..
T Consensus       237 ~~~~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~  275 (375)
T PLN02178        237 KEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLP  275 (375)
T ss_pred             HHhhCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccC
Confidence            11223479999998876432  22456777777788764

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.45  E-value=0.034  Score=50.29  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=43.0

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------C------HHhhccCCCEEEEecC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------N------PEQITSEADIVIAAAG  132 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~------l~~~~~~ADIVIsatg  132 (216)
                      ++++|+|.|+.|.+|+.++..|.++|.+|+.+.|...               |      +...++++|+||...+
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa   94 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA   94 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence            6799999999999999999999999999888765310               1      2334567899997775

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.44  E-value=0.023  Score=49.47  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=28.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|.|||+|-+ |.+++..|+..|.+|++++++
T Consensus         4 ~kI~VIG~G~m-G~~ia~~la~~g~~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTM-GNGIAQVCAVAGYDVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHH-HHHHHHHHHHCCCceEEEeCC
Confidence            57999999875 999999999999999998743

>PRK06139 short chain dehydrogenase; Provisional

Probab=95.44  E-value=0.016  Score=51.82  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~   40 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARD   40 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999998888999999999999999988775

>PLN02527 aspartate carbamoyltransferase

Probab=95.44  E-value=0.1  Score=46.51  Aligned_cols=74  Identities=15%  Similarity=0.163  Sum_probs=54.9

Q ss_pred             CccCCCcHHHHHHHH-HHhCCCCCCCeEEEEcCC-c-hhHHHHHHHHHhC-CCEEEEEeCC-------------------
Q 027976           57 PLFIPCTPKGCIELL-IRSGVEIMGKNAVVIGRS-N-IVGLPTSLLLQRH-HATVSIVHAL-------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g~~~~L-~~~~~~l~gk~v~ViG~g-g-~vg~~~a~~L~~~-ga~Vti~~~~-------------------  113 (216)
                      +...||=+.+=+--+ ++.+ +++|++|+++|-+ . -+.+.++..|... |++|+++...                   
T Consensus       128 ~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~  206 (306)
T PLN02527        128 PGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEW  206 (306)
T ss_pred             CCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEE
Confidence            346899888844444 4454 6999999999986 2 2578888887776 8999888542                   


Q ss_pred             --CCCHHhhccCCCEEEEec
Q 027976          114 --TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 --t~~l~~~~~~ADIVIsat  131 (216)
                        +.++.+.+++||+|.+..
T Consensus       207 ~~~~d~~~a~~~aDvvyt~~  226 (306)
T PLN02527        207 EESSDLMEVASKCDVLYQTR  226 (306)
T ss_pred             EEEcCHHHHhCCCCEEEECC
Confidence              246789999999999743

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=95.44  E-value=0.026  Score=53.64  Aligned_cols=72  Identities=17%  Similarity=0.203  Sum_probs=51.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------------------------CHHhhcc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------------------NPEQITS  122 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------------------------~l~~~~~  122 (216)
                      ++|.|||+|-+ |.++|..|+..|..|++.+++.+                                      ++ +.+.
T Consensus         8 ~~V~VIGaG~M-G~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~-~~~~   85 (507)
T PRK08268          8 ATVAVIGAGAM-GAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEAL-ADLA   85 (507)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhC
Confidence            67999999865 99999999999999999976521                                      22 3467


Q ss_pred             CCCEEEEecCCCCcccCC-------cccCCcEE-EEeeeC
Q 027976          123 EADIVIAAAGVANLVRGS-------WLKPGAVV-LDVGTC  154 (216)
Q Consensus       123 ~ADIVIsatg~p~~i~~~-------~i~~g~vV-iDvg~~  154 (216)
                      +||+||.++.-..-++..       ..++++++ .|.++-
T Consensus        86 ~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl  125 (507)
T PRK08268         86 DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSL  125 (507)
T ss_pred             CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence            899999998754333332       23456665 355543

>PLN00198 anthocyanidin reductase; Provisional

Probab=95.42  E-value=0.047  Score=48.19  Aligned_cols=56  Identities=21%  Similarity=0.142  Sum_probs=43.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHHhhccCCCEEE
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVI  128 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~ADIVI  128 (216)
                      +.++++++|.|++|.+|+.++..|+++|++|.++.+..                            .++.+.+++.|+||
T Consensus         6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   85 (338)
T PLN00198          6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF   85 (338)
T ss_pred             CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence            45789999999999999999999999999987654321                            01345567789999


Q ss_pred             EecC
Q 027976          129 AAAG  132 (216)
Q Consensus       129 satg  132 (216)
                      ..++
T Consensus        86 h~A~   89 (338)
T PLN00198         86 HVAT   89 (338)
T ss_pred             EeCC
Confidence            7776

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.41  E-value=0.057  Score=48.20  Aligned_cols=38  Identities=16%  Similarity=0.067  Sum_probs=33.4

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ..-+++|+|+|.|+.|.+|+.++..|+++|.+|+.+.+
T Consensus        10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~   47 (348)
T PRK15181         10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN   47 (348)
T ss_pred             cccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            34578899999999999999999999999999887754

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.41  E-value=0.033  Score=47.02  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~   41 (254)
T PRK06114          4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLR   41 (254)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999888764

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.41  E-value=0.048  Score=48.44  Aligned_cols=52  Identities=21%  Similarity=0.279  Sum_probs=41.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCCCC-------CH----------------HhhccCCCEEEEecCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTK-------NP----------------EQITSEADIVIAAAGVA  134 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t~-------~l----------------~~~~~~ADIVIsatg~p  134 (216)
                      +|.|||+|. ||.+++..|+.+|  .+|.++++...       ++                .+.+++||+||.++|.|
T Consensus         2 kI~IIGaG~-VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~   78 (308)
T cd05292           2 KVAIVGAGF-VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN   78 (308)
T ss_pred             EEEEECCCH-HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence            699999976 6999999999999  46888876531       01                25678999999999975

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.39  E-value=0.058  Score=47.48  Aligned_cols=53  Identities=26%  Similarity=0.404  Sum_probs=41.2

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      ++|.|||+|. +|..++..++..|. +|.+.++..                          .+. +.+++||+||.+.|.
T Consensus         3 ~KI~VIGaG~-vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~   80 (307)
T PRK06223          3 KKISIIGAGN-VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV   80 (307)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence            5899999965 59999999998874 888886531                          123 568999999999886


Q ss_pred             CC
Q 027976          134 AN  135 (216)
Q Consensus       134 p~  135 (216)
                      |.
T Consensus        81 p~   82 (307)
T PRK06223         81 PR   82 (307)
T ss_pred             CC
Confidence            54

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.38  E-value=0.084  Score=48.55  Aligned_cols=71  Identities=25%  Similarity=0.356  Sum_probs=49.9

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHHhhccCCCEEEE
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQITSEADIVIA  129 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------~~l~~~~~~ADIVIs  129 (216)
                      +|.|||.|-. |.++|..|+ .|.+|+.++++.                                .+..+..++||+||.
T Consensus         2 kI~VIGlGyv-Gl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          2 KITISGTGYV-GLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             EEEEECCCHH-HHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            5899999875 999998777 488999997641                                112345688999999


Q ss_pred             ecCCCC----------ccc------CCcccCCcEEEEeeeCC
Q 027976          130 AAGVAN----------LVR------GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       130 atg~p~----------~i~------~~~i~~g~vViDvg~~~  155 (216)
                      +++.|-          .+.      .. +++|.+||+-+.-|
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~  120 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP  120 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence            998761          110      11 36788888766544

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=95.38  E-value=0.022  Score=49.81  Aligned_cols=39  Identities=33%  Similarity=0.372  Sum_probs=35.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ..+.||.++|-|++.-+|+++|..|++.||+|+++.|+.
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~   42 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSE   42 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            358999999999998899999999999999999998763

>PRK12939 short chain dehydrogenase; Provisional

Probab=95.38  E-value=0.022  Score=47.45  Aligned_cols=37  Identities=30%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++|+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~   40 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGL   40 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence            3678999999998888999999999999998887654

>PRK07411 hypothetical protein; Validated

Probab=95.38  E-value=0.029  Score=51.61  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=29.5

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEe
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  111 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  111 (216)
                      |+.++|+|+|.||. |-+++.+|+..|. ++++++
T Consensus        36 L~~~~VlivG~GGl-G~~va~~La~~Gvg~l~lvD   69 (390)
T PRK07411         36 LKAASVLCIGTGGL-GSPLLLYLAAAGIGRIGIVD   69 (390)
T ss_pred             HhcCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEC
Confidence            67889999999996 9999999999997 688883

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=95.37  E-value=0.032  Score=47.20  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|+|+++.+|+.++..|+++|+.|.++.+.
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~   40 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS   40 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999998877653

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.37  E-value=0.029  Score=51.60  Aligned_cols=33  Identities=33%  Similarity=0.513  Sum_probs=29.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEe
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  111 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  111 (216)
                      |+.++|+|+|.||. |..++..|+..|. ++++++
T Consensus        40 L~~~~VlviG~GGl-Gs~va~~La~~Gvg~i~lvD   73 (392)
T PRK07878         40 LKNARVLVIGAGGL-GSPTLLYLAAAGVGTLGIVE   73 (392)
T ss_pred             HhcCCEEEECCCHH-HHHHHHHHHHcCCCeEEEEC
Confidence            57889999999996 9999999999996 688883

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.36  E-value=0.022  Score=47.50  Aligned_cols=37  Identities=22%  Similarity=0.423  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++++++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~   40 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLART   40 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999999999999999999999999888775

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.36  E-value=0.027  Score=47.83  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CCCCeEEEEcCC--chhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||+++|.|++  +-+|++++..|+++|++|.++.|+
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            689999999997  335999999999999999888654

>PLN02778 3,5-epimerase/4-reductase

Probab=95.35  E-value=0.056  Score=47.45  Aligned_cols=54  Identities=20%  Similarity=0.166  Sum_probs=41.0

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---HHhhcc--CCCEEEEecCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---PEQITS--EADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---l~~~~~--~ADIVIsatg~  133 (216)
                      .++++|.|++|.+|+.++..|.++|.+|+.....-.+   +...++  +.|+||.+++.
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~   67 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGV   67 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCcc
Confidence            4789999999999999999999999998765433222   333333  58999987763

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.33  E-value=0.044  Score=50.09  Aligned_cols=39  Identities=21%  Similarity=0.140  Sum_probs=34.1

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +...++++++|+|++|.+|+.++..|.++|.+|+.+.|.
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~   93 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVARE   93 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence            445678999999999999999999999999998888664

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.33  E-value=0.023  Score=48.48  Aligned_cols=37  Identities=22%  Similarity=0.154  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~   40 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN   40 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4689999999998888999999999999998888664

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.32  E-value=0.021  Score=47.36  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +.+++++|+|+++.+|+.++..|+++|++|.++.|+
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~   39 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARD   39 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence            468999999998889999999999999999988765

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.30  E-value=0.037  Score=53.40  Aligned_cols=36  Identities=22%  Similarity=-0.000  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+||.++|.|++|-+|+.++..|+++|++|+++.|+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn  113 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRS  113 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            478999999998888999999999999999887664

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.28  E-value=0.04  Score=49.85  Aligned_cols=76  Identities=24%  Similarity=0.305  Sum_probs=52.2

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhC-CCEEE-EEeCCC---C--------------------CHHhhccCCCEEEEecCCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRH-HATVS-IVHALT---K--------------------NPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~-ga~Vt-i~~~~t---~--------------------~l~~~~~~ADIVIsatg~p~  135 (216)
                      .+|.|+|++|.+|+-+++.|.++ +.++. ++.+..   +                    +..+..+++|+|+.|+|...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            37999999888999999999877 46765 543321   0                    11233357999999998542


Q ss_pred             c--ccCCcccCCcEEEEeeeCCc
Q 027976          136 L--VRGSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       136 ~--i~~~~i~~g~vViDvg~~~~  156 (216)
                      .  +-+...+.|..|||++...+
T Consensus        81 s~~~~~~~~~~G~~VIDlS~~fR  103 (346)
T TIGR01850        81 SAELAPELLAAGVKVIDLSADFR  103 (346)
T ss_pred             HHHHHHHHHhCCCEEEeCChhhh
Confidence            1  33334467899999987654

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.28  E-value=0.036  Score=47.20  Aligned_cols=37  Identities=14%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||.++|.|++   | +|++++..|+++|++|.++.++
T Consensus         6 ~~~~~k~~lItGas~g~G-IG~a~a~~la~~G~~v~l~~r~   45 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQS-IAWGCARAFRALGAELAVTYLN   45 (258)
T ss_pred             cccCCCEEEEECCCCCCc-HHHHHHHHHHHcCCEEEEEeCC
Confidence            35789999999986   5 4999999999999999888665

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.28  E-value=0.16  Score=46.24  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=67.6

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHh-CCCE---EEEEeCCC----------CC-----H-HhhccCCCEEEEecCCCC--c
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQR-HHAT---VSIVHALT----------KN-----P-EQITSEADIVIAAAGVAN--L  136 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga~---Vti~~~~t----------~~-----l-~~~~~~ADIVIsatg~p~--~  136 (216)
                      ++.+|.|||+.|.+|+-+..+|.+ ....   +..+.+..          ++     + .+..++.|+++.|+|..-  .
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~   83 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQ   83 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHH
Confidence            456899999999999999999994 6665   54443321          00     0 133478999999997532  1


Q ss_pred             ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHH
Q 027976          137 VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML  201 (216)
Q Consensus       137 i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amL  201 (216)
                      +-+...+.|..|||.+...+-   ++..   .-.+-.++.+.+++..+.+ ..||   -.|++|+
T Consensus        84 ~~~~~~~~G~~VID~Ss~fR~---~~~v---plvvPEvN~e~i~~~~~iI-anPn---C~tt~~~  138 (347)
T PRK06728         84 FVNQAVSSGAIVIDNTSEYRM---AHDV---PLVVPEVNAHTLKEHKGII-AVPN---CSALQMV  138 (347)
T ss_pred             HHHHHHHCCCEEEECchhhcC---CCCC---CeEeCCcCHHHHhccCCEE-ECCC---CHHHHHH
Confidence            222334679999999877653   1111   1245556655554322433 3553   3445554

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=95.26  E-value=0.043  Score=49.15  Aligned_cols=94  Identities=21%  Similarity=0.273  Sum_probs=57.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCC------------------CCCHHh-
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL------------------TKNPEQ-  119 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~------------------t~~l~~-  119 (216)
                      +|+++.-+..+|.+..---.|++|+|.|+++.||..+.+++...|++ |.+..+.                  ..++.+ 
T Consensus       123 l~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~  202 (326)
T COG0604         123 LPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQ  202 (326)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHH
Confidence            45555566667766332233999999998888999999999999965 3333222                  112322 


Q ss_pred             ---hcc--CCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976          120 ---ITS--EADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       120 ---~~~--~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~  153 (216)
                         .+.  ..|+|+..+|...+ -.-..++++-.++.++.
T Consensus       203 v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         203 VRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             HHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEec
Confidence               222  46888888876543 12344555555555554

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.26  E-value=0.067  Score=47.54  Aligned_cols=53  Identities=28%  Similarity=0.418  Sum_probs=41.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      ++|.|||+|. ||..+|..|+.+|. +|++++...                          .++ +.+++||+||.+.|.
T Consensus         2 ~KV~VIGaG~-vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~-~~~~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGAGF-VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNY-ADTANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECcCH-HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCH-HHhCCCCEEEEcCCC
Confidence            4799999976 59999999999875 788886531                          233 348899999999996


Q ss_pred             CC
Q 027976          134 AN  135 (216)
Q Consensus       134 p~  135 (216)
                      |.
T Consensus        80 p~   81 (305)
T TIGR01763        80 PR   81 (305)
T ss_pred             CC
Confidence            54

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PLN00106 malate dehydrogenase

Probab=95.25  E-value=0.087  Score=47.34  Aligned_cols=57  Identities=26%  Similarity=0.380  Sum_probs=42.9

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCC-----------------------CCCHHhhccCCCEEEEecCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL-----------------------TKNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~-----------------------t~~l~~~~~~ADIVIsatg~  133 (216)
                      ..++|+|+|+.|.||..++..|+.++.  ++.+++..                       +.++.+.+++||+||.+.|.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            457999999944479999999987663  56666432                       23457889999999999986


Q ss_pred             CC
Q 027976          134 AN  135 (216)
Q Consensus       134 p~  135 (216)
                      |.
T Consensus        97 ~~   98 (323)
T PLN00106         97 PR   98 (323)
T ss_pred             CC
Confidence            54

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.24  E-value=0.032  Score=48.10  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCCc--hhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||.++|.|+++  -+|+++|..|+++|++|.++.|+
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~   42 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG   42 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence            6899999999983  34999999999999999887654

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.24  E-value=0.025  Score=47.14  Aligned_cols=36  Identities=17%  Similarity=0.249  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|++++|+|+++.+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~   38 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLN   38 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            679999999997778999999999999998888665

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=95.23  E-value=0.037  Score=46.65  Aligned_cols=37  Identities=27%  Similarity=0.292  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++|+++|.|+++-+|+.++..|+++|++|.++.|.
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~   41 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS   41 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3689999999999989999999999999999888764

>PLN02253 xanthoxin dehydrogenase

Probab=95.22  E-value=0.027  Score=48.24  Aligned_cols=37  Identities=32%  Similarity=0.472  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~   51 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ   51 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            4689999999999999999999999999998888653

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=95.22  E-value=0.039  Score=54.40  Aligned_cols=73  Identities=27%  Similarity=0.327  Sum_probs=54.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCCC----------------CCHHhhccCCCEEEEecCCCCc---cc-
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT----------------KNPEQITSEADIVIAAAGVANL---VR-  138 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~~---i~-  138 (216)
                      ++|.|||.|.+ |.+++..|.+.|  .+|++++++.                .++.+.+.++|+||.+++....   +. 
T Consensus         4 ~~I~IIG~G~m-G~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~   82 (735)
T PRK14806          4 GRVVVIGLGLI-GGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLAD   82 (735)
T ss_pred             cEEEEEeeCHH-HHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence            68999999885 999999999988  3788887652                2345567899999999984321   11 


Q ss_pred             -CCcccCCcEEEEeeeC
Q 027976          139 -GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       139 -~~~i~~g~vViDvg~~  154 (216)
                       ...++++.+|+|++..
T Consensus        83 l~~~~~~~~ii~d~~sv   99 (735)
T PRK14806         83 LKPLLSEHAIVTDVGST   99 (735)
T ss_pred             HHHhcCCCcEEEEcCCC
Confidence             1245678899999864

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.22  E-value=0.041  Score=45.43  Aligned_cols=37  Identities=32%  Similarity=0.379  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++.+|+++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~   38 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSN   38 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3567899999999999999999999999999888775

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=95.22  E-value=0.12  Score=46.86  Aligned_cols=74  Identities=19%  Similarity=0.117  Sum_probs=53.6

Q ss_pred             ccCCCcHHH-HHHHHHHh---CCCCCCCeEEEEcCC--chhHHHHHHHHHh-CCCEEEEEeCC-----------------
Q 027976           58 LFIPCTPKG-CIELLIRS---GVEIMGKNAVVIGRS--NIVGLPTSLLLQR-HHATVSIVHAL-----------------  113 (216)
Q Consensus        58 ~~~p~Ta~g-~~~~L~~~---~~~l~gk~v~ViG~g--g~vg~~~a~~L~~-~ga~Vti~~~~-----------------  113 (216)
                      ...||=+.+ ++.+.++.   +.+++|++++++|-+  +-+.+.++..|.. .|++|+++...                 
T Consensus       133 ~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~  212 (338)
T PRK08192        133 NEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGH  212 (338)
T ss_pred             CCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCC
Confidence            568998888 44444443   347899999999996  4457777766654 48898888532                 


Q ss_pred             ----CCCHHhhccCCCEEEEec
Q 027976          114 ----TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 ----t~~l~~~~~~ADIVIsat  131 (216)
                          +.++.+++++||+|++..
T Consensus       213 ~~~~~~d~~ea~~~aDvvyt~~  234 (338)
T PRK08192        213 KITITDQLEGNLDKADILYLTR  234 (338)
T ss_pred             eEEEEcCHHHHHccCCEEEEcC
Confidence                146778999999999853

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=95.21  E-value=0.06  Score=50.51  Aligned_cols=53  Identities=23%  Similarity=0.164  Sum_probs=43.8

Q ss_pred             CCCcHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEE-EEeCC
Q 027976           60 IPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL  113 (216)
Q Consensus        60 ~p~Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~~  113 (216)
                      -++|.+|++..+    ++.+.+++||+|+|=|.|. ||..+|..|.+.|++|. +++++
T Consensus       213 ~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~Gn-Vg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        213 PEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGN-VAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             CcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEcCC
Confidence            457999976555    4567889999999999987 59999999999999955 77665

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.21  E-value=0.035  Score=44.99  Aligned_cols=37  Identities=24%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++||+|+|||.|.+ |.-++..|++.|.+|+++.|+.
T Consensus       164 ~~~~k~V~VVG~G~S-A~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  164 DFKGKRVVVVGGGNS-AVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             GCTTSEEEEE--SHH-HHHHHHHHTTTCSEEEEEESS-
T ss_pred             hcCCCcEEEEcChHH-HHHHHHHHHhhCCEEEEEecCC
Confidence            578999999999987 8888999999999999999864

...

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.21  E-value=0.039  Score=49.99  Aligned_cols=78  Identities=19%  Similarity=0.224  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCCC---------------CCH-HhhccCCCEEEEecCCCCc--c
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---------------KNP-EQITSEADIVIAAAGVANL--V  137 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t---------------~~l-~~~~~~ADIVIsatg~p~~--i  137 (216)
                      ...+|.|+|++|.+|+-+..+|.+++.   ++..+.+..               .++ .+.+.++|+||.|+|....  +
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~   85 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKF   85 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHH
Confidence            456899999999999999999998664   343332221               011 2345789999999975421  2


Q ss_pred             cCCcccCCcEEEEeeeCCc
Q 027976          138 RGSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       138 ~~~~i~~g~vViDvg~~~~  156 (216)
                      -++..+.|+.|||.+-...
T Consensus        86 ~~~~~~~g~~VIDlS~~fR  104 (344)
T PLN02383         86 GPIAVDKGAVVVDNSSAFR  104 (344)
T ss_pred             HHHHHhCCCEEEECCchhh
Confidence            2233457899999986554

>PRK12742 oxidoreductase; Provisional

Probab=95.20  E-value=0.038  Score=45.79  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=31.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .++||+++|.|+++-+|+.++..|+++|++|.+..+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~   38 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA   38 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            367999999999888899999999999999876643

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.19  E-value=0.065  Score=47.58  Aligned_cols=59  Identities=17%  Similarity=0.271  Sum_probs=46.6

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------------------CCHHhhc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------KNPEQIT  121 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------------~~l~~~~  121 (216)
                      ..+.+|+.|+|-|+|.-+||.+|..++++|+++.+.+.+.                                 +.+++..
T Consensus        33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            3568999999999999999999999999999765553321                                 1234666


Q ss_pred             cCCCEEEEecCC
Q 027976          122 SEADIVIAAAGV  133 (216)
Q Consensus       122 ~~ADIVIsatg~  133 (216)
                      .+-||+||.+|.
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            778999998884

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.19  E-value=0.021  Score=49.83  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~   49 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN   49 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999998887654

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.17  E-value=0.033  Score=46.20  Aligned_cols=37  Identities=35%  Similarity=0.442  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE-eCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV-HAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~-~~~  113 (216)
                      ++.+|+++|+|+++.+|+.++..|+++|++|.+. .|+
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~   39 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDIN   39 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4678999999998889999999999999998887 654

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=95.16  E-value=0.0067  Score=43.58  Aligned_cols=38  Identities=11%  Similarity=0.051  Sum_probs=24.4

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCc
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDG   41 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg   41 (216)
                      +++.+|..++.|++|++|+|  .+..++++.+++ .+-+.+
T Consensus        41 ~~~~~~~~~~~G~~VT~P~K--~~~~~~~D~~~~~A~~igA   79 (83)
T PF08501_consen   41 FLDALRAPNFRGLNVTMPHK--EAAIPYLDELSPSAKAIGA   79 (83)
T ss_dssp             HHHHHHHTTESEEEE-TTST--THHGGGSSEE-HHHHHHTS
T ss_pred             HHHHHhcCCCCeeeecchHH--HHHHHHhccCCHHHHHhCC
Confidence            35678889999999999999  333445555555 444433

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.14  E-value=0.017  Score=51.62  Aligned_cols=90  Identities=24%  Similarity=0.284  Sum_probs=61.4

Q ss_pred             HHHHHHHHH----------hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976           65 KGCIELLIR----------SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------------------  113 (216)
Q Consensus        65 ~g~~~~L~~----------~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------------------  113 (216)
                      .+++..+.+          .+....+.+++++|.|-+ |..++..-...|+-|+-..-.                     
T Consensus       139 ~aVi~Aa~a~~rffpm~~TAagtv~pA~vlv~G~Gva-gl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee  217 (356)
T COG3288         139 IAVIGAALAYGRFFPMQITAAGTVSPAKVLVIGAGVA-GLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEE  217 (356)
T ss_pred             HHHHHHHHHhhhcccchhhhcccccchhhhhhhHHHH-HHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccc
Confidence            445666655          334567888999999765 876666555567766654211                     


Q ss_pred             ---------C--------CCHHhhccCCCEEEEecC---C--CCcccCCcc---cCCcEEEEeeeCC
Q 027976          114 ---------T--------KNPEQITSEADIVIAAAG---V--ANLVRGSWL---KPGAVVLDVGTCP  155 (216)
Q Consensus       114 ---------t--------~~l~~~~~~ADIVIsatg---~--p~~i~~~~i---~~g~vViDvg~~~  155 (216)
                               +        +.+.+++++.||||++.=   +  |.+++.+|+   |||.+++|+....
T Consensus       218 ~~gGYAk~ms~~~~~~q~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~  284 (356)
T COG3288         218 SAGGYAKEMSEEFIAKQAELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAET  284 (356)
T ss_pred             cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhc
Confidence                     0        124578999999998763   3  335888885   8999999998643

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=95.14  E-value=0.14  Score=47.33  Aligned_cols=75  Identities=20%  Similarity=0.200  Sum_probs=56.6

Q ss_pred             CccCCCcHHH-HHHHHHHhCC--CCCCCeEEEEcC-------CchhHHHHHHHHHhCCCEEEEEeCC-------------
Q 027976           57 PLFIPCTPKG-CIELLIRSGV--EIMGKNAVVIGR-------SNIVGLPTSLLLQRHHATVSIVHAL-------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~--~l~gk~v~ViG~-------gg~vg~~~a~~L~~~ga~Vti~~~~-------------  113 (216)
                      +...||=+.+ ++.+.++.+-  .++|++|+++|.       +..|++.++.+|...|++|+++...             
T Consensus       161 ~~~HPtQaLaDl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~  240 (395)
T PRK07200        161 DIDHPTQSMADLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAK  240 (395)
T ss_pred             CCCCcHHHHHHHHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHH
Confidence            3567888887 5555566653  389999999964       4467889999999999999998533             


Q ss_pred             ------------CCCHHhhccCCCEEEEec
Q 027976          114 ------------TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 ------------t~~l~~~~~~ADIVIsat  131 (216)
                                  +.++.+++++||+|.+-+
T Consensus       241 ~~~~~~G~~i~~~~d~~eav~~aDvVYtd~  270 (395)
T PRK07200        241 KNAKASGGSFRQVNSMEEAFKDADIVYPKS  270 (395)
T ss_pred             HHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence                        246678999999999653

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=95.14  E-value=0.12  Score=44.69  Aligned_cols=91  Identities=15%  Similarity=0.119  Sum_probs=58.1

Q ss_pred             CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCH----H
Q 027976           62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNP----E  118 (216)
Q Consensus        62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l----~  118 (216)
                      +.+..++..++... --.|.+++|.|+++.+|..++.++...|++|+++.+..                   .++    .
T Consensus       123 ~~~~ta~~~~~~~~-~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~  201 (324)
T cd08292         123 AMPLSALMLLDFLG-VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVR  201 (324)
T ss_pred             ccHHHHHHHHHhhC-CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHH
Confidence            33444444554322 23688999999988889999999999999876664321                   111    1


Q ss_pred             hhc--cCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976          119 QIT--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       119 ~~~--~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~  153 (216)
                      +..  +..|+|+.++|.+.. -.-+.++++..+++++.
T Consensus       202 ~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~  239 (324)
T cd08292         202 EAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGS  239 (324)
T ss_pred             HHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEec
Confidence            222  247999988886532 11244567777888874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.12  E-value=0.047  Score=45.12  Aligned_cols=37  Identities=32%  Similarity=0.282  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++|+++|.|+++.+|+.++..|+++|++|++..++
T Consensus         2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~   38 (248)
T PRK05557          2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS   38 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4678999999999999999999999999998777554

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.10  E-value=0.042  Score=45.81  Aligned_cols=36  Identities=22%  Similarity=0.250  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|+++|.|+++.+|+.++..|+++|++|.+..++
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~   36 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLN   36 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            578999999999999999999999999998887554

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=95.08  E-value=0.045  Score=48.95  Aligned_cols=76  Identities=13%  Similarity=0.132  Sum_probs=52.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC----CCHHhhccCCCEEEEecCCCCc--ccCCcccCCcEEEEeee
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----KNPEQITSEADIVIAAAGVANL--VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t----~~l~~~~~~ADIVIsatg~p~~--i~~~~i~~g~vViDvg~  153 (216)
                      .+|.|+|++|..|.-+.++|.++. .++.-..+..    .+..+.+.++|+++-|++....  +-+...+.|..|||++.
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSa   81 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAVSLVDNPNTCIIDAST   81 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence            379999999999999999998875 4533333221    2344556789999999975321  22223356899999986


Q ss_pred             CCc
Q 027976          154 CPV  156 (216)
Q Consensus       154 ~~~  156 (216)
                      ..+
T Consensus        82 dfR   84 (310)
T TIGR01851        82 AYR   84 (310)
T ss_pred             HHh
Confidence            654

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=95.08  E-value=0.039  Score=41.82  Aligned_cols=75  Identities=21%  Similarity=0.198  Sum_probs=48.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhC-CCEEEEE-eCCC---CC-------H--------H-hhc--cCCCEEEEecCCCCc--
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRH-HATVSIV-HALT---KN-------P--------E-QIT--SEADIVIAAAGVANL--  136 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~-~~~t---~~-------l--------~-~~~--~~ADIVIsatg~p~~--  136 (216)
                      ++.|+|++|.+|+.++..|.+. +.+++.+ .+..   +.       +        . +.+  .++|+||.+++....  
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            4789998777798888888874 6775444 3221   00       0        0 112  378999999985431  


Q ss_pred             -cc--CCcccCCcEEEEeeeCCc
Q 027976          137 -VR--GSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       137 -i~--~~~i~~g~vViDvg~~~~  156 (216)
                       +.  ...+++|.+|||++....
T Consensus        81 ~~~~~~~~~~~g~~viD~s~~~~  103 (122)
T smart00859       81 IAPLLPKAAEAGVKVIDLSSAFR  103 (122)
T ss_pred             HHHHHHhhhcCCCEEEECCcccc
Confidence             11  123478999999997654

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=95.06  E-value=0.069  Score=46.99  Aligned_cols=93  Identities=26%  Similarity=0.298  Sum_probs=59.9

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCCC-------------------C---
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTK-------------------N---  116 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t~-------------------~---  116 (216)
                      ++|....++..+++.++ ..|.+++|.|+|. +|..++.++...|++ |+++.+..+                   +   
T Consensus       145 l~~~~~ta~~~l~~~~~-~~g~~vlV~G~G~-vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~  222 (339)
T cd08239         145 LLCGIGTAYHALRRVGV-SGRDTVLVVGAGP-VGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQE  222 (339)
T ss_pred             hcchHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHH
Confidence            34444444555655443 4599999999865 699999999999998 877654311                   1   


Q ss_pred             HHhhcc--CCCEEEEecCCCCccc--CCcccCCcEEEEeeeC
Q 027976          117 PEQITS--EADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       117 l~~~~~--~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~  154 (216)
                      +.+...  ..|++|.++|.+..+.  -+.++++..++-++..
T Consensus       223 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         223 IRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             HHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCC
Confidence            112222  4799999998764322  2456777667777754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.06  E-value=0.088  Score=47.29  Aligned_cols=76  Identities=22%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHHh----hcc-CCCEEEEecC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQ----ITS-EADIVIAAAG  132 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~~----~~~-~ADIVIsatg  132 (216)
                      -.|++|+|.|+|. +|..++.++...|+ +|+++.++.                   .++.+    ... .+|++|.++|
T Consensus       190 ~~g~~VlV~G~G~-vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G  268 (371)
T cd08281         190 RPGQSVAVVGLGG-VGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG  268 (371)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence            3689999999865 69998888888998 577664331                   12212    111 3799999998


Q ss_pred             CCCccc--CCcccCCcEEEEeeeC
Q 027976          133 VANLVR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       133 ~p~~i~--~~~i~~g~vViDvg~~  154 (216)
                      .+..+.  -+.++++..++-++..
T Consensus       269 ~~~~~~~~~~~l~~~G~iv~~G~~  292 (371)
T cd08281         269 SVPALETAYEITRRGGTTVTAGLP  292 (371)
T ss_pred             ChHHHHHHHHHHhcCCEEEEEccC
Confidence            764332  2456676666667653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.05  E-value=0.06  Score=46.68  Aligned_cols=52  Identities=17%  Similarity=0.224  Sum_probs=41.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhccCCCEEEEecC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAG  132 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg  132 (216)
                      ++++|+|++|.+|+.++..|+++|.+|+.+.|...                     ++.+.++.+|+||...+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            36999999888999999999999999888866421                     24456778899997765

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=95.04  E-value=0.065  Score=50.20  Aligned_cols=49  Identities=22%  Similarity=0.258  Sum_probs=41.0

Q ss_pred             CCCcHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEE
Q 027976           60 IPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  109 (216)
Q Consensus        60 ~p~Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti  109 (216)
                      -++|++|+...+    ++.+.+++|++|+|=|.|. ||..+|..|.+.|++|..
T Consensus       204 ~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGn-VG~~aA~~L~e~GakvVa  256 (445)
T PRK14030        204 PEATGFGALYFVHQMLETKGIDIKGKTVAISGFGN-VAWGAATKATELGAKVVT  256 (445)
T ss_pred             CCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEE
Confidence            457999876554    5668899999999999987 599999999999999555

>PRK05086 malate dehydrogenase; Provisional

Probab=95.02  E-value=0.085  Score=47.05  Aligned_cols=55  Identities=27%  Similarity=0.432  Sum_probs=39.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHh-CC--CEEEEEeCC-----------------------CCCHHhhccCCCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQR-HH--ATVSIVHAL-----------------------TKNPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~-~g--a~Vti~~~~-----------------------t~~l~~~~~~ADIVIsatg~p  134 (216)
                      ++++|||++|.+|..++..|.. .+  ..++++.+.                       ..++.+.++++|+||.+.|.+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            4799999966679999988754 33  356666431                       124467888999999999975


Q ss_pred             C
Q 027976          135 N  135 (216)
Q Consensus       135 ~  135 (216)
                      +
T Consensus        81 ~   81 (312)
T PRK05086         81 R   81 (312)
T ss_pred             C
Confidence            4

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.02  E-value=0.075  Score=51.84  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .|++|+|||+|-+ |..+|..|++.|++|+++.+
T Consensus       326 ~~~~VaIIGaGpA-GLsaA~~L~~~G~~V~V~E~  358 (654)
T PRK12769        326 SDKRVAIIGAGPA-GLACADVLARNGVAVTVYDR  358 (654)
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEec
Confidence            6899999999998 99999999999999999965

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=95.01  E-value=0.066  Score=45.62  Aligned_cols=52  Identities=21%  Similarity=0.298  Sum_probs=42.0

Q ss_pred             EEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------CHHhhccCCCEEEEecCCC
Q 027976           83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        83 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------~l~~~~~~ADIVIsatg~p  134 (216)
                      |+|.|+.|.+|+.++..|+++|.+|+...|...                .+.+.+++.|+||..++.+
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~~   68 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGEP   68 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCCC
Confidence            589999999999999999999999998877532                1234567799999888754

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.00  E-value=0.088  Score=47.42  Aligned_cols=54  Identities=24%  Similarity=0.165  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHHhhccCCCEEEE
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVIA  129 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------~l~~~~~~ADIVIs  129 (216)
                      .+++|+|.|++|.+|.-+...|+.+|++|.-.-|...                             .+.+.++.+|.|+.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH   84 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH   84 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence            6789999999999999999999999999888866531                             24578889999994


Q ss_pred             ecC
Q 027976          130 AAG  132 (216)
Q Consensus       130 atg  132 (216)
                      +..
T Consensus        85 ~As   87 (327)
T KOG1502|consen   85 TAS   87 (327)
T ss_pred             eCc
Confidence            443

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.99  E-value=0.047  Score=47.88  Aligned_cols=38  Identities=34%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ..+++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus         7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~   44 (306)
T PRK07792          7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDV   44 (306)
T ss_pred             CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            45789999999999999999999999999999888765

>PRK08278 short chain dehydrogenase; Provisional

Probab=94.99  E-value=0.049  Score=46.77  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKT   39 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            4688999999999999999999999999998888764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.99  E-value=0.25  Score=45.61  Aligned_cols=123  Identities=21%  Similarity=0.247  Sum_probs=0.0

Q ss_pred             CCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCC-------------------------
Q 027976           23 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVE-------------------------   77 (216)
Q Consensus        23 ~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~-------------------------   77 (216)
                      +.|..++.+.|-.++.+.- |..|.|   .|+.-.| +|-+-.+.++..++++.+                         
T Consensus       231 g~D~~~V~~gIGlD~RIG~-~fl~aG---~GyGGsC-fPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~~~~~~i~~~  305 (414)
T COG1004         231 GADVKQVAEGIGLDPRIGN-HFLNAG---FGYGGSC-FPKDTKALIANAEELGYDPNLLEAVVEVNERRKDKLAEKILNH  305 (414)
T ss_pred             CCCHHHHHHHcCCCchhhH-hhCCCC---CCCCCcC-CcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh


Q ss_pred             --CCCCeEEEEcCCc---------hhHHHHHHHHHhCCCEEEEEeCC--------------CCCHHhhccCCCEEEEecC
Q 027976           78 --IMGKNAVVIGRSN---------IVGLPTSLLLQRHHATVSIVHAL--------------TKNPEQITSEADIVIAAAG  132 (216)
Q Consensus        78 --l~gk~v~ViG~gg---------~vg~~~a~~L~~~ga~Vti~~~~--------------t~~l~~~~~~ADIVIsatg  132 (216)
                        ++||++.|+|-.-         +-...++.+|.++|++|.+....              ..+..+.+++||++|..|.
T Consensus       306 ~~l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te  385 (414)
T COG1004         306 LGLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE  385 (414)
T ss_pred             cCCCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc


Q ss_pred             CCCcccCCccc---CCcEEEE
Q 027976          133 VANLVRGSWLK---PGAVVLD  150 (216)
Q Consensus       133 ~p~~i~~~~i~---~g~vViD  150 (216)
                      ...+-..+|-+   ++.+|+|
T Consensus       386 w~ef~~~d~~~~~m~~~~v~D  406 (414)
T COG1004         386 WDEFRDLDFEKLLMKTPVVID  406 (414)
T ss_pred             HHHHhccChhhhhccCCEEEe

>PRK06914 short chain dehydrogenase; Provisional

Probab=94.98  E-value=0.046  Score=46.70  Aligned_cols=35  Identities=31%  Similarity=0.208  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|.++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~   36 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRN   36 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence            57889999999999999999999999998887664

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.97  E-value=0.033  Score=46.99  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++|+++|+|+++.+|+.++..|+++|++|.++.+.
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~   44 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            3679999999999999999999999999998877654

>PRK06153 hypothetical protein; Provisional

Probab=94.96  E-value=0.034  Score=51.19  Aligned_cols=33  Identities=15%  Similarity=0.292  Sum_probs=29.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEE
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIV  110 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~  110 (216)
                      .|++++|+|||.||. |..++..|++.|. +++++
T Consensus       173 kL~~~~VaIVG~GG~-GS~Va~~LAR~GVgeI~LV  206 (393)
T PRK06153        173 KLEGQRIAIIGLGGT-GSYILDLVAKTPVREIHLF  206 (393)
T ss_pred             HHhhCcEEEEcCCcc-HHHHHHHHHHcCCCEEEEE
Confidence            378999999999997 9999999999996 68888

>PRK08226 short chain dehydrogenase; Provisional

Probab=94.96  E-value=0.049  Score=45.99  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|+++|.|+++.+|+.++..|+++|++|+++.|.
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~   39 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDIS   39 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            678999999999999999999999999999888665

>PRK07109 short chain dehydrogenase; Provisional

Probab=94.95  E-value=0.03  Score=49.95  Aligned_cols=37  Identities=27%  Similarity=0.231  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~   41 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARG   41 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999999998889999999999999999888765

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=94.94  E-value=0.038  Score=45.89  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++++++|.|+++.+|+.++..|+++|+.|.+..++
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~   39 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTR   39 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            4689999999999989999999999999988776443

>PRK08643 acetoin reductase; Validated

Probab=94.94  E-value=0.036  Score=46.67  Aligned_cols=34  Identities=26%  Similarity=0.257  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|+++|+|+++.+|+.++..|+++|++|.++.|+
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~   35 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYN   35 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            7899999999999999999999999998888664

>PRK09414 glutamate dehydrogenase; Provisional

Probab=94.92  E-value=0.073  Score=49.88  Aligned_cols=51  Identities=25%  Similarity=0.185  Sum_probs=42.3

Q ss_pred             cCCCcHHHHHHHHH----HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE
Q 027976           59 FIPCTPKGCIELLI----RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  110 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~----~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  110 (216)
                      --+.|++|+...++    +.+.+++|++|+|.|.|. ||+.+|..|.+.|++|+.+
T Consensus       207 r~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGn-VG~~~A~~L~~~GakVVav  261 (445)
T PRK09414        207 RTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGN-VAIYAIEKAQQLGAKVVTC  261 (445)
T ss_pred             CCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence            45689988766554    557889999999999987 5999999999999996655

>PRK08263 short chain dehydrogenase; Provisional

Probab=94.91  E-value=0.068  Score=45.72  Aligned_cols=35  Identities=17%  Similarity=-0.009  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|.++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~   36 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARD   36 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            46889999999999999999999999998888665

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.90  E-value=0.071  Score=37.39  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=29.0

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++|||+|-+ |.-+|..|++.|.+|+++++..
T Consensus         1 ~vvViGgG~i-g~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFI-GIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHH-HHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHhCcEEEEEeccc
Confidence            6899999875 9999999999999999998875

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=94.90  E-value=0.14  Score=45.70  Aligned_cols=73  Identities=18%  Similarity=0.205  Sum_probs=55.7

Q ss_pred             ccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------CC
Q 027976           58 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------TK  115 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------t~  115 (216)
                      ...||=+.+=+--++++.-.++|++++++|-...+.+.++..|...|++|+++...                      +.
T Consensus       130 ~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~  209 (304)
T PRK00779        130 LSHPCQILADLLTIYEHRGSLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH  209 (304)
T ss_pred             CCChHHHHHHHHHHHHHhCCcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence            35788777733344333346999999999996668999999999999999998532                      14


Q ss_pred             CHHhhccCCCEEEEe
Q 027976          116 NPEQITSEADIVIAA  130 (216)
Q Consensus       116 ~l~~~~~~ADIVIsa  130 (216)
                      ++.+.+++||+|.+-
T Consensus       210 d~~~a~~~aDvvy~~  224 (304)
T PRK00779        210 DPKEAVKGADVVYTD  224 (304)
T ss_pred             CHHHHhCCCCEEEec
Confidence            667889999999975

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=94.88  E-value=0.089  Score=47.15  Aligned_cols=53  Identities=28%  Similarity=0.376  Sum_probs=41.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-C-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH-A-TVSIVHALT--------------------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g-a-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg  132 (216)
                      ++|.|||+|. ||.++|++|..++ + ++.+++...                          .+ .+.++.||+||-+.|
T Consensus         1 ~KVaviGaG~-VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~-y~~~~~aDiVvitAG   78 (313)
T COG0039           1 MKVAVIGAGN-VGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGD-YEDLKGADIVVITAG   78 (313)
T ss_pred             CeEEEECCCh-HHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCC-hhhhcCCCEEEEeCC
Confidence            4799999966 6999999998887 4 677775441                          12 578999999998888


Q ss_pred             CCC
Q 027976          133 VAN  135 (216)
Q Consensus       133 ~p~  135 (216)
                      .|.
T Consensus        79 ~pr   81 (313)
T COG0039          79 VPR   81 (313)
T ss_pred             CCC
Confidence            654

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=94.88  E-value=0.14  Score=44.18  Aligned_cols=91  Identities=16%  Similarity=0.108  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------------C--C----HHhh
Q 027976           64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------K--N----PEQI  120 (216)
Q Consensus        64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------~--~----l~~~  120 (216)
                      +..+...+.+......|.+++|.|+++.+|..++..+..+|+.|++..++.                 .  +    +.+.
T Consensus       123 ~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  202 (323)
T cd05282         123 PLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEA  202 (323)
T ss_pred             HHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHH
Confidence            333344444444445788999999988889999999999999876654321                 0  1    1122


Q ss_pred             c--cCCCEEEEecCCCCcc-cCCcccCCcEEEEeeeC
Q 027976          121 T--SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       121 ~--~~ADIVIsatg~p~~i-~~~~i~~g~vViDvg~~  154 (216)
                      .  +..|+++..+|.+... ..++++++..+++++..
T Consensus       203 ~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~  239 (323)
T cd05282         203 TGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLL  239 (323)
T ss_pred             hcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccC
Confidence            2  3579999988865431 23456777778888754

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=94.88  E-value=0.21  Score=42.49  Aligned_cols=88  Identities=22%  Similarity=0.229  Sum_probs=57.0

Q ss_pred             HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CC----HHhhc--
Q 027976           67 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KN----PEQIT--  121 (216)
Q Consensus        67 ~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~----l~~~~--  121 (216)
                      +...+.+...-.+|++++|.|+++.+|..++.++...|++|++..++.                   .+    +.+..  
T Consensus       132 a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  211 (325)
T cd08253         132 AYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAG  211 (325)
T ss_pred             HHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCC
Confidence            344444433334789999999877789999999999999987765421                   11    11222  


Q ss_pred             cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          122 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       122 ~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      +..|++++++|.... ...++++++..+++++..
T Consensus       212 ~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~  245 (325)
T cd08253         212 QGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSG  245 (325)
T ss_pred             CceEEEEECCchHHHHHHHHhhCCCCEEEEEeec
Confidence            247888888775432 223456666777888753

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.87  E-value=0.058  Score=45.08  Aligned_cols=36  Identities=31%  Similarity=0.333  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~   39 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ   39 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            678999999998778999999999999998887664

>PRK06720 hypothetical protein; Provisional

Probab=94.86  E-value=0.045  Score=44.41  Aligned_cols=40  Identities=30%  Similarity=0.401  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  115 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~  115 (216)
                      ..++||.++|.|+++-+|++++..|++.|++|.++.++.+
T Consensus        12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~   51 (169)
T PRK06720         12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQE   51 (169)
T ss_pred             cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3478999999999887899999999999999998877643

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=94.86  E-value=0.059  Score=47.83  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=30.9

Q ss_pred             CCCCCCCeEEEEcC---CchhHHHHHHHHHhCCCEEEEE
Q 027976           75 GVEIMGKNAVVIGR---SNIVGLPTSLLLQRHHATVSIV  110 (216)
Q Consensus        75 ~~~l~gk~v~ViG~---gg~vg~~~a~~L~~~ga~Vti~  110 (216)
                      ..+++||.++|-|+   +|+ |+++|..|+++|++|.+.
T Consensus         4 ~~~l~gk~alITGa~~s~GI-G~a~A~~la~~Ga~Vv~~   41 (303)
T PLN02730          4 PIDLRGKRAFIAGVADDNGY-GWAIAKALAAAGAEILVG   41 (303)
T ss_pred             CcCCCCCEEEEeCCCCCCcH-HHHHHHHHHHCCCEEEEE
Confidence            45689999999999   665 999999999999998873

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=94.84  E-value=0.084  Score=47.79  Aligned_cols=61  Identities=13%  Similarity=0.144  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhccCCCEEEEecCCCC-c---cc--CCcccCCcE
Q 027976           93 GLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGVAN-L---VR--GSWLKPGAV  147 (216)
Q Consensus        93 g~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~~ADIVIsatg~p~-~---i~--~~~i~~g~v  147 (216)
                      |.++|..|++.|.+|++++++.                   .+..+.+++||+||.+++.+. .   +.  .+.++++.+
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~I  111 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAV  111 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCE
Confidence            4566666666666666665532                   134567889999999998654 1   11  134577899


Q ss_pred             EEEeee
Q 027976          148 VLDVGT  153 (216)
Q Consensus       148 ViDvg~  153 (216)
                      |+|++.
T Consensus       112 VId~ST  117 (342)
T PRK12557        112 ICNTCT  117 (342)
T ss_pred             EEEecC
Confidence            999875

>PRK07677 short chain dehydrogenase; Provisional

Probab=94.84  E-value=0.047  Score=45.96  Aligned_cols=34  Identities=21%  Similarity=0.197  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~   34 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRT   34 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999999888764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=94.84  E-value=0.062  Score=54.81  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      -.||+|+|||+|-+ |.++|..|+++|.+|+|+.+.
T Consensus       304 ~~gkkVaVIGsGPA-GLsaA~~Lar~G~~VtVfE~~  338 (944)
T PRK12779        304 AVKPPIAVVGSGPS-GLINAYLLAVEGFPVTVFEAF  338 (944)
T ss_pred             CCCCeEEEECCCHH-HHHHHHHHHHCCCeEEEEeeC
Confidence            46999999999998 999999999999999999653

>PRK06701 short chain dehydrogenase; Provisional

Probab=94.84  E-value=0.055  Score=47.09  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~   79 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD   79 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999989999999999999998888654

>PRK05993 short chain dehydrogenase; Provisional

Probab=94.83  E-value=0.047  Score=46.92  Aligned_cols=35  Identities=20%  Similarity=0.130  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~   37 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRK   37 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999998888999999999999999988775

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=94.83  E-value=0.033  Score=46.71  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++|+++|.|+++.+|..++..|+++|++|.++.|+
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~   45 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRT   45 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence            3689999999999999999999999999998888765

>PRK12827 short chain dehydrogenase; Provisional

Probab=94.83  E-value=0.057  Score=44.81  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ++++++++|.|+++.+|+.++..|+++|++|++..+
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~   38 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDI   38 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence            467899999999999999999999999999877543

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.82  E-value=0.054  Score=46.21  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeC
Q 027976           77 EIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      +++||.++|.|++   |+ |++++..|+++|++|.++.|
T Consensus         4 ~~~~k~~lItGa~~s~GI-G~aia~~la~~G~~v~~~~r   41 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSI-AWGIARSLHNAGAKLVFTYA   41 (257)
T ss_pred             ccCCCEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEecC
Confidence            5789999999985   64 99999999999999988754

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.82  E-value=0.082  Score=48.31  Aligned_cols=71  Identities=20%  Similarity=0.216  Sum_probs=51.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-------CEEEEEeCC---------------------------------CCCHHhh
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHAL---------------------------------TKNPEQI  120 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g-------a~Vti~~~~---------------------------------t~~l~~~  120 (216)
                      .+|+|||+|.. |.++|..|++.+       .+|++..++                                 +.++.+.
T Consensus        12 ~ki~ViGaG~w-GtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         12 LKVSVIGSGNW-GSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CeEEEECCCHH-HHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            58999999886 999999999886       577775332                                 1356788


Q ss_pred             ccCCCEEEEecCCCCc------ccCC-cccCCcEEEEee
Q 027976          121 TSEADIVIAAAGVANL------VRGS-WLKPGAVVLDVG  152 (216)
Q Consensus       121 ~~~ADIVIsatg~p~~------i~~~-~i~~g~vViDvg  152 (216)
                      +++||+||-|++...+      +.+. .++++.++|-+.
T Consensus        91 v~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~a  129 (365)
T PTZ00345         91 VEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLT  129 (365)
T ss_pred             HhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEe
Confidence            9999999999986431      3321 455566676664

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.81  E-value=0.046  Score=48.96  Aligned_cols=76  Identities=17%  Similarity=0.173  Sum_probs=51.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-CEEEEE-eCCCCC---HHhhccCCCEEEEecCCCC--cccCCcccCCcEEEEeee
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIV-HALTKN---PEQITSEADIVIAAAGVAN--LVRGSWLKPGAVVLDVGT  153 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~-~~~t~~---l~~~~~~ADIVIsatg~p~--~i~~~~i~~g~vViDvg~  153 (216)
                      -+|.|+|++|.+|.-+.++|.++. .++.-. .+...+   ..+...++|+++.|++...  .+-+...+.|..|||++.
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~~~~~~~~~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSa   82 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDAAARRELLNAADVAILCLPDDAAREAVALIDNPATRVIDAST   82 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcccCchhhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence            479999999999999999998886 343333 222112   2334467999999997432  122233457899999987


Q ss_pred             CCc
Q 027976          154 CPV  156 (216)
Q Consensus       154 ~~~  156 (216)
                      ..+
T Consensus        83 dfR   85 (313)
T PRK11863         83 AHR   85 (313)
T ss_pred             hhh
Confidence            765

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=94.81  E-value=0.044  Score=51.18  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+|+|||+|.+ |--++..|.+.|++|+++.|+
T Consensus       171 ~~~~GKrV~VIG~GaS-A~di~~~l~~~ga~vt~~qRs  207 (443)
T COG2072         171 EDLRGKRVLVIGAGAS-AVDIAPELAEVGASVTLSQRS  207 (443)
T ss_pred             cccCCCeEEEECCCcc-HHHHHHHHHhcCCeeEEEecC
Confidence            4789999999999988 999999999999999999876

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.80  E-value=0.08  Score=46.83  Aligned_cols=51  Identities=25%  Similarity=0.390  Sum_probs=40.4

Q ss_pred             EEEEcCCchhHHHHHHHHHhCC--CEEEEEeCCC-------------------------CCHHhhccCCCEEEEecCCCC
Q 027976           83 AVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT-------------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        83 v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t-------------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      +.|||+|. ||.+++..|+..|  .++++++.+.                         .+ .+.+++||+||.+.|.|.
T Consensus         1 i~iiGaG~-VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGAGN-VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR   78 (300)
T ss_pred             CEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence            47999987 6999999999988  4688886542                         12 468899999999999753

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK09135 pteridine reductase; Provisional

Probab=94.80  E-value=0.056  Score=44.88  Aligned_cols=36  Identities=19%  Similarity=0.138  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..+++++|.|+++.+|+.++..|+++|++|+++.|.
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~   39 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHR   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            467899999999999999999999999999888654

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.80  E-value=0.1  Score=46.53  Aligned_cols=76  Identities=25%  Similarity=0.218  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCC-------------------CCH----Hhhcc--CCCEEEEec
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT-------------------KNP----EQITS--EADIVIAAA  131 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t-------------------~~l----~~~~~--~ADIVIsat  131 (216)
                      -.|++++|.|+|. +|..++.++...|++ |+.+.++.                   .+.    .+...  ..|++|.++
T Consensus       175 ~~g~~VlV~G~g~-vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~  253 (358)
T TIGR03451       175 KRGDSVAVIGCGG-VGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV  253 (358)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence            4689999999865 699999988889985 76664321                   122    12222  479999999


Q ss_pred             CCCCccc--CCcccCCcEEEEeeeC
Q 027976          132 GVANLVR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       132 g~p~~i~--~~~i~~g~vViDvg~~  154 (216)
                      |.+..+.  -+.++++-.++.+|..
T Consensus       254 g~~~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       254 GRPETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             CCHHHHHHHHHHhccCCEEEEECCC
Confidence            9764332  2356777777777754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=94.78  E-value=0.037  Score=48.92  Aligned_cols=57  Identities=35%  Similarity=0.458  Sum_probs=42.3

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE----------------eCCC----------CCHHhhccCCCEEEEec
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV----------------HALT----------KNPEQITSEADIVIAAA  131 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~----------------~~~t----------~~l~~~~~~ADIVIsat  131 (216)
                      -.+.+|.|+|++|-+|.|+..+|. ....|+-.                |.+|          +.|++.++.||+||-+.
T Consensus        26 ~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPA  104 (345)
T KOG1494|consen   26 QRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPA  104 (345)
T ss_pred             cCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecC
Confidence            457789999999888999987665 43323222                2222          36889999999999999


Q ss_pred             CCCC
Q 027976          132 GVAN  135 (216)
Q Consensus       132 g~p~  135 (216)
                      |.|.
T Consensus       105 GVPR  108 (345)
T KOG1494|consen  105 GVPR  108 (345)
T ss_pred             CCCC
Confidence            9765

>PRK06483 dihydromonapterin reductase; Provisional

Probab=94.77  E-value=0.054  Score=45.05  Aligned_cols=35  Identities=14%  Similarity=0.167  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +|+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH   36 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence            57899999988889999999999999998887754

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.74  E-value=0.097  Score=48.19  Aligned_cols=55  Identities=18%  Similarity=0.243  Sum_probs=41.1

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHH--------------hhccCCCEEEEecCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPE--------------QITSEADIVIAAAGVA  134 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~--------------~~~~~ADIVIsatg~p  134 (216)
                      +.++|+|+|.|++ |+++|++|.++|++|+.+++....+.              ...+++|++|-+.|.+
T Consensus         2 ~~~~i~iiGlG~~-G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~   70 (418)
T PRK00683          2 GLQRVVVLGLGVT-GKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK   70 (418)
T ss_pred             CCCeEEEEEECHH-HHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence            3578999999997 99999999999999999886542111              1135578888776644

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=94.74  E-value=0.075  Score=45.88  Aligned_cols=50  Identities=26%  Similarity=0.269  Sum_probs=40.1

Q ss_pred             CCCcHHHHHHHHH----HhCCC-CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE
Q 027976           60 IPCTPKGCIELLI----RSGVE-IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  110 (216)
Q Consensus        60 ~p~Ta~g~~~~L~----~~~~~-l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  110 (216)
                      .++|++|+...++    +.+.+ ++|++++|-|.|. ||..++..|.+.|++|..+
T Consensus         7 ~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~-VG~~~a~~l~~~Ga~vv~v   61 (244)
T PF00208_consen    7 SEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGN-VGSHAARFLAELGAKVVAV   61 (244)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSH-HHHHHHHHHHHTTEEEEEE
T ss_pred             CcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEE
Confidence            5678898877665    43555 9999999999977 5999999999999984433

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.73  E-value=0.088  Score=45.18  Aligned_cols=52  Identities=19%  Similarity=0.189  Sum_probs=40.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC---CEEEEEeCCC---------------CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALT---------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t---------------~~l~~~~~~ADIVIsatg~  133 (216)
                      .++.|||.|.+ |..++..|.+.|   ..|++++|+.               .+..+.+.++|+||-+++.
T Consensus         3 m~I~iIG~G~m-G~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~   72 (267)
T PRK11880          3 KKIGFIGGGNM-ASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP   72 (267)
T ss_pred             CEEEEEechHH-HHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH
Confidence            47999999875 999999999888   5788887752               2334567889999988864

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.72  E-value=0.12  Score=46.16  Aligned_cols=52  Identities=21%  Similarity=0.436  Sum_probs=40.3

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      .+|.|||+|. ||..+|..|+..+.  ++.+++.+.                         .+ .+.+++|||||.+.|.
T Consensus         4 ~Ki~IiGaG~-VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~d-y~~~~~adivvitaG~   81 (312)
T cd05293           4 NKVTVVGVGQ-VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKD-YSVTANSKVVIVTAGA   81 (312)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCC-HHHhCCCCEEEECCCC
Confidence            4899999966 69999999988884  577775431                         12 3568999999998886


Q ss_pred             C
Q 027976          134 A  134 (216)
Q Consensus       134 p  134 (216)
                      |
T Consensus        82 ~   82 (312)
T cd05293          82 R   82 (312)
T ss_pred             C
Confidence            4

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12937 short chain dehydrogenase; Provisional

Probab=94.70  E-value=0.064  Score=44.55  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .+++|+++|.|+++.+|+.++..|+++|++|.++.+
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~   37 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA   37 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence            467899999999888999999999999999877644

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=94.68  E-value=0.12  Score=41.58  Aligned_cols=75  Identities=21%  Similarity=0.240  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC---------------------------CCCHHhhccCCCEEEEe
Q 027976           79 MGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL---------------------------TKNPEQITSEADIVIAA  130 (216)
Q Consensus        79 ~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~---------------------------t~~l~~~~~~ADIVIsa  130 (216)
                      +|++++++|-+ +.+.++++..|...|++++++...                           +.++.+.+++||+|++.
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            47788888853 445888888888888887777322                           24677999999999865


Q ss_pred             cCC-C---C----------c-ccCCcc---cCCcEEEEeee
Q 027976          131 AGV-A---N----------L-VRGSWL---KPGAVVLDVGT  153 (216)
Q Consensus       131 tg~-p---~----------~-i~~~~i---~~g~vViDvg~  153 (216)
                      .=. .   +          + ++.+.+   +++++++-+.-
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP  121 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLP  121 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCC
Confidence            433 1   0          3 555544   46777776653

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK08303 short chain dehydrogenase; Provisional

Probab=94.68  E-value=0.062  Score=47.38  Aligned_cols=38  Identities=26%  Similarity=0.218  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            35789999999998878999999999999999888764

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=94.65  E-value=0.095  Score=46.15  Aligned_cols=51  Identities=24%  Similarity=0.407  Sum_probs=39.0

Q ss_pred             EEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecCCCC
Q 027976           83 AVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        83 v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      |.|||+|. +|..++..|+..+. +|++++.+.                          .+ .+.+++||+||.+.|.|.
T Consensus         1 I~IIGaG~-vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g~p~   78 (300)
T cd01339           1 ISIIGAGN-VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAGIPR   78 (300)
T ss_pred             CEEECCCH-HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecCCCC
Confidence            57999966 59999999888774 888886541                          23 356899999999988654

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.63  E-value=0.11  Score=50.64  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .||+|+|||+|-+ |..+|..|+++|++|+++.+.
T Consensus       309 ~~kkVaIIG~Gpa-Gl~aA~~L~~~G~~Vtv~e~~  342 (639)
T PRK12809        309 RSEKVAVIGAGPA-GLGCADILARAGVQVDVFDRH  342 (639)
T ss_pred             CCCEEEEECcCHH-HHHHHHHHHHcCCcEEEEeCC
Confidence            5999999999987 999999999999999999643

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.63  E-value=0.047  Score=45.55  Aligned_cols=34  Identities=32%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|+++|.|+++.+|+.++..|+++|++|+++.|.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~   34 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLG   34 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999888765

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=94.62  E-value=0.15  Score=45.61  Aligned_cols=47  Identities=17%  Similarity=0.047  Sum_probs=34.3

Q ss_pred             HHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           66 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        66 g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .++..|.+....-.|.+++|.|+++.+|..++.++...|++|+.+.+
T Consensus       145 TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~  191 (348)
T PLN03154        145 TAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG  191 (348)
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC
Confidence            33445544333357999999999777899999989999998766543

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.60  E-value=0.12  Score=46.43  Aligned_cols=55  Identities=11%  Similarity=0.207  Sum_probs=41.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-------EEEEEeCCC--------------------------CCHHhhccCCCEE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA-------TVSIVHALT--------------------------KNPEQITSEADIV  127 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga-------~Vti~~~~t--------------------------~~l~~~~~~ADIV  127 (216)
                      ++|.|||++|.||..++..|+..+.       ++.+.+...                          .+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            5899999955679999999988773       577775521                          1235789999999


Q ss_pred             EEecCCCC
Q 027976          128 IAAAGVAN  135 (216)
Q Consensus       128 Isatg~p~  135 (216)
                      |.+.|.|.
T Consensus        83 vitaG~~~   90 (322)
T cd01338          83 LLVGAKPR   90 (322)
T ss_pred             EEeCCCCC
Confidence            99999754

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08267 short chain dehydrogenase; Provisional

Probab=94.60  E-value=0.052  Score=45.84  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=30.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+++|+|+++.+|+.++..|+++|++|.++.|+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~   34 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDIN   34 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            689999999999999999999999999888664

>PRK09620 hypothetical protein; Provisional

Probab=94.59  E-value=0.17  Score=43.18  Aligned_cols=59  Identities=22%  Similarity=0.279  Sum_probs=44.0

Q ss_pred             CCCCeEEEEcCC----------------chhHHHHHHHHHhCCCEEEEEeCCC----C---------------C----HH
Q 027976           78 IMGKNAVVIGRS----------------NIVGLPTSLLLQRHHATVSIVHALT----K---------------N----PE  118 (216)
Q Consensus        78 l~gk~v~ViG~g----------------g~vg~~~a~~L~~~ga~Vti~~~~t----~---------------~----l~  118 (216)
                      ++||+|+|-+.+                |.+|..+|..|..+|++|++++...    .               +    +.
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~   80 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMK   80 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHH
Confidence            478999998775                7789999999999999999876421    0               1    22


Q ss_pred             hhcc--CCCEEEEecCCCCc
Q 027976          119 QITS--EADIVIAAAGVANL  136 (216)
Q Consensus       119 ~~~~--~ADIVIsatg~p~~  136 (216)
                      +.++  ++|+||.+.....|
T Consensus        81 ~~~~~~~~D~VIH~AAvsD~  100 (229)
T PRK09620         81 SIITHEKVDAVIMAAAGSDW  100 (229)
T ss_pred             HHhcccCCCEEEECccccce
Confidence            3443  57999988776655

>PRK07791 short chain dehydrogenase; Provisional

Probab=94.58  E-value=0.056  Score=46.91  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~   38 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDI   38 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeC
Confidence            67999999999999999999999999999888754

>PRK06444 prephenate dehydrogenase; Provisional

Probab=94.57  E-value=0.084  Score=44.17  Aligned_cols=59  Identities=12%  Similarity=0.241  Sum_probs=43.4

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccC-CcEEEEeeeC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKP-GAVVLDVGTC  154 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~-g~vViDvg~~  154 (216)
                      ++.|||+.|-+|+.++..|.+.|..|+            +++||+||-|++....  .+++++ ..+++|++.-
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------~~~~DlVilavPv~~~--~~~i~~~~~~v~Dv~Sv   61 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------IKKADHAFLSVPIDAA--LNYIESYDNNFVEISSV   61 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE------------ECCCCEEEEeCCHHHH--HHHHHHhCCeEEecccc
Confidence            689999955569999999999999886            4689999999985321  122222 2368898864

>PRK07985 oxidoreductase; Provisional

Probab=94.57  E-value=0.065  Score=46.74  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .++||+++|.|+++-+|+.++..|+++|++|.+..+
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~   81 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYL   81 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecC
Confidence            478999999999998999999999999999887654

>PRK06198 short chain dehydrogenase; Provisional

Probab=94.57  E-value=0.06  Score=45.31  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~  113 (216)
                      .+++|+++|.|+++.+|+.++..|+++|++ |.++.|.
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~   40 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN   40 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence            368999999999988999999999999998 8888765

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.57  E-value=0.071  Score=44.50  Aligned_cols=35  Identities=23%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      +++|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~   37 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH   37 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence            57899999999998999999999999999877543

>PRK07577 short chain dehydrogenase; Provisional

Probab=94.56  E-value=0.075  Score=43.91  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~   36 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARS   36 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999888765

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=94.54  E-value=0.067  Score=45.07  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~   35 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN   35 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            6889999999999999999999999998888664

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.54  E-value=0.054  Score=48.95  Aligned_cols=78  Identities=18%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCC---CEEEEEeCCC---------------CCHHhh-ccCCCEEEEecCCCC--cc
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALT---------------KNPEQI-TSEADIVIAAAGVAN--LV  137 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t---------------~~l~~~-~~~ADIVIsatg~p~--~i  137 (216)
                      +..+|.|+|++|.+|+-+.++|.++.   .++....+..               .++.+. ..++|+++.|+|..-  .+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s~~~   82 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREASAAY   82 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHHHHH
Confidence            46789999999999999999999842   4655554431               012222 267899999997532  13


Q ss_pred             cCCcccCCcEEEEeeeCCc
Q 027976          138 RGSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       138 ~~~~i~~g~vViDvg~~~~  156 (216)
                      -++..+.|..|||.+-..+
T Consensus        83 ~~~~~~~g~~VIDlS~~fR  101 (336)
T PRK08040         83 AEEATNAGCLVIDSSGLFA  101 (336)
T ss_pred             HHHHHHCCCEEEECChHhc
Confidence            3334467999999986654

>PRK08328 hypothetical protein; Provisional

Probab=94.54  E-value=0.064  Score=45.73  Aligned_cols=36  Identities=14%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  113 (216)
                      .+++++|+|+|+||. |.+++..|+..|. ++++++..
T Consensus        24 ~L~~~~VlIiG~GGl-Gs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         24 KLKKAKVAVVGVGGL-GSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHhCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcCC
Confidence            367899999999996 9999999999996 69998543

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=94.53  E-value=0.11  Score=43.14  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=48.2

Q ss_pred             CCCCeEEEEcC----------------CchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHHhhc
Q 027976           78 IMGKNAVVIGR----------------SNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQIT  121 (216)
Q Consensus        78 l~gk~v~ViG~----------------gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~  121 (216)
                      |+||+|+|-+.                +|-.|..+|..+..+||+|+.++....                    .+.+.+
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~   80 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELL   80 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHG
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhcccc
Confidence            46777777654                345699999999999999999976531                    234667


Q ss_pred             cCCCEEEEecCCCCcc----cCCcccC---CcEEEEeeeCCc
Q 027976          122 SEADIVIAAAGVANLV----RGSWLKP---GAVVLDVGTCPV  156 (216)
Q Consensus       122 ~~ADIVIsatg~p~~i----~~~~i~~---g~vViDvg~~~~  156 (216)
                      +++|++|.+.-...|-    ...-+++   ....+.+.-+|+
T Consensus        81 ~~~Di~I~aAAVsDf~p~~~~~~KIkK~~~~~l~l~L~~~pk  122 (185)
T PF04127_consen   81 PSADIIIMAAAVSDFRPEEPAEGKIKKSSGDELTLELKPTPK  122 (185)
T ss_dssp             GGGSEEEE-SB--SEEESCHHSS-G---TT-CEEEEEEE-GG
T ss_pred             CcceeEEEecchhheeehhccccccccccCcceEEEEEeChH
Confidence            8899999887765552    2234552   357788887774

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.51  E-value=0.063  Score=45.46  Aligned_cols=37  Identities=22%  Similarity=0.160  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEcCCc-hhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSN-IVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg-~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++|+++|.|+++ -+|+.++..|+++|++|+++.++
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~   51 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIH   51 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCC
Confidence            35789999999853 35999999999999998888654

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.50  E-value=0.069  Score=47.50  Aligned_cols=36  Identities=28%  Similarity=0.159  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||+++|.|++|.+|+.++..|+++|++|+++.|.
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~   37 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLD   37 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999998888999999999999999887653

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK06180 short chain dehydrogenase; Provisional

Probab=94.50  E-value=0.059  Score=46.22  Aligned_cols=35  Identities=14%  Similarity=-0.082  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   37 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRS   37 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence            46889999999999999999999999999888764

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.50  E-value=0.1  Score=48.49  Aligned_cols=74  Identities=19%  Similarity=0.222  Sum_probs=53.0

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHHhhccCCCEEEEe
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVIAA  130 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------~l~~~~~~ADIVIsa  130 (216)
                      .-+|.|||-|-+ |.|+|..|+. +.+|+.++++..                             ...+.+++||++|.+
T Consensus         6 ~mkI~vIGlGyv-GlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~   83 (425)
T PRK15182          6 EVKIAIIGLGYV-GLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT   83 (425)
T ss_pred             CCeEEEECcCcc-hHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence            367999999875 9999999877 688999876521                             012457899999999


Q ss_pred             cCCCC---------ccc------CCcccCCcEEEEeeeCC
Q 027976          131 AGVAN---------LVR------GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       131 tg~p~---------~i~------~~~i~~g~vViDvg~~~  155 (216)
                      +|.|.         .+.      ...+++|.+|||.+.-+
T Consensus        84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~  123 (425)
T PRK15182         84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY  123 (425)
T ss_pred             cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence            99772         111      12346788888876654

>PLN02780 ketoreductase/ oxidoreductase

Probab=94.49  E-value=0.035  Score=49.30  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=33.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  115 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~  115 (216)
                      .|+.++|.|+++-+|+.+|..|+++|++|.++.|+.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~   88 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPD   88 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            6899999999988899999999999999999887643

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=94.47  E-value=0.076  Score=44.86  Aligned_cols=36  Identities=25%  Similarity=0.252  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      +++||.++|.|+++-+|++++..|+++|++|..+++
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~   42 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINI   42 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecC
Confidence            578999999999998999999999999999877643

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.47  E-value=0.074  Score=45.37  Aligned_cols=37  Identities=19%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEcCCc--hhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++||.++|.|+++  -+|++++..|+++|++|.++.++
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~   43 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS   43 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence            36799999999973  25999999999999998887654

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=94.46  E-value=0.05  Score=47.85  Aligned_cols=37  Identities=19%  Similarity=0.148  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++.+|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~   39 (322)
T PRK07453          3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRN   39 (322)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            3578999999998888999999999999999888653

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=94.45  E-value=0.074  Score=46.98  Aligned_cols=36  Identities=17%  Similarity=0.045  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ++++|+|+|.|++|.+|+.++..|+++|++|+++.+
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r   38 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR   38 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence            578999999999988999999999999999887643

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.44  E-value=0.091  Score=52.00  Aligned_cols=32  Identities=19%  Similarity=0.149  Sum_probs=28.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|.|||+|-+ |..+|..++..|.+|++...+
T Consensus       314 ~~v~ViGaG~m-G~gIA~~~a~~G~~V~l~d~~  345 (715)
T PRK11730        314 KQAAVLGAGIM-GGGIAYQSASKGVPVIMKDIN  345 (715)
T ss_pred             ceEEEECCchh-HHHHHHHHHhCCCeEEEEeCC
Confidence            67999999875 999999999999999999654

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.44  E-value=0.072  Score=46.06  Aligned_cols=35  Identities=14%  Similarity=0.219  Sum_probs=30.5

Q ss_pred             CCCCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||.++|.|++   |+ |+++|..|+++|++|.++.|+
T Consensus         3 l~~k~~lItGas~~~GI-G~aiA~~la~~G~~Vil~~r~   40 (274)
T PRK08415          3 MKGKKGLIVGVANNKSI-AYGIAKACFEQGAELAFTYLN   40 (274)
T ss_pred             cCCcEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEEecC
Confidence            579999999984   65 999999999999999887654

>PRK06128 oxidoreductase; Provisional

Probab=94.44  E-value=0.074  Score=46.35  Aligned_cols=36  Identities=19%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~   87 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL   87 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence            378999999999988999999999999999877643

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.44  E-value=0.072  Score=45.77  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcCCc--hhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||.++|.|+|+  -+|++++..|+++|++|.++.++
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            6799999999972  35999999999999998887654

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=94.44  E-value=0.12  Score=46.10  Aligned_cols=53  Identities=21%  Similarity=0.249  Sum_probs=40.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC--------------------C-----CHHhhccCCCEEEEecCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT--------------------K-----NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t--------------------~-----~l~~~~~~ADIVIsatg~p  134 (216)
                      +|.|||+|. ||.++|+.|+.++.  ++.+++...                    .     .-.+.+++|||||.+.|.|
T Consensus         1 Ki~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~   79 (307)
T cd05290           1 KLVVIGAGH-VGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS   79 (307)
T ss_pred             CEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence            589999976 69999999988884  577775431                    0     1157899999999999975


Q ss_pred             C
Q 027976          135 N  135 (216)
Q Consensus       135 ~  135 (216)
                      .
T Consensus        80 ~   80 (307)
T cd05290          80 I   80 (307)
T ss_pred             C
Confidence            3

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=94.43  E-value=0.13  Score=45.78  Aligned_cols=57  Identities=18%  Similarity=0.246  Sum_probs=49.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      -..+++=-||-|.. |.+++..|.+.|++|++.+|+.              ..-.+..+.+|+||+-++.|.
T Consensus        33 ~s~~~iGFIGLG~M-G~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~  103 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNM-GSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPK  103 (327)
T ss_pred             cccceeeEEeeccc-hHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChH
Confidence            35788999999886 9999999999999999999873              234688999999999999775

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.42  E-value=0.14  Score=47.33  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +.+|++.|+|.|+. |++++.+|+++|++|+.++..
T Consensus         4 ~~~~~i~v~G~G~s-G~s~~~~l~~~G~~v~~~D~~   38 (438)
T PRK03806          4 YQGKKVVIIGLGLT-GLSCVDFFLARGVTPRVIDTR   38 (438)
T ss_pred             cCCCEEEEEeeCHH-HHHHHHHHHHCCCeEEEEcCC
Confidence            56899999999998 999999999999999999754

>PRK08324 short chain dehydrogenase; Validated

Probab=94.41  E-value=0.084  Score=51.77  Aligned_cols=37  Identities=27%  Similarity=0.281  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+.||+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~  455 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLD  455 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            4689999999987778999999999999998888765

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.40  E-value=0.18  Score=44.40  Aligned_cols=88  Identities=14%  Similarity=0.025  Sum_probs=54.4

Q ss_pred             HHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhc---
Q 027976           66 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQIT---  121 (216)
Q Consensus        66 g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~---  121 (216)
                      .++..|.+...--.|.+++|.|+++.+|..++.++..+|++|+.+.+..+                     ++.+.+   
T Consensus       138 tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~  217 (338)
T cd08295         138 TAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRY  217 (338)
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHh
Confidence            34455544433357999999999777899999999999998766543211                     121111   


Q ss_pred             --cCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976          122 --SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       122 --~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~  153 (216)
                        +..|+++.++|.... -.-+.++++..++.+|.
T Consensus       218 ~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         218 FPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHhccCcEEEEecc
Confidence              235777777775321 12244666666667664

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK12744 short chain dehydrogenase; Provisional

Probab=94.39  E-value=0.068  Score=45.12  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEe
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  111 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  111 (216)
                      .+++|+++|.|+++.+|+.++..|+++|++|.++.
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~   39 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIH   39 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEe
Confidence            46789999999999999999999999999855543

>PRK07454 short chain dehydrogenase; Provisional

Probab=94.39  E-value=0.055  Score=45.05  Aligned_cols=35  Identities=20%  Similarity=0.237  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~   39 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARS   39 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999998888999999999999999998775

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=94.38  E-value=0.081  Score=45.07  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=29.5

Q ss_pred             CCCCCeEEEEcCC--chhHHHHHHHHHhCCCEEEEEe
Q 027976           77 EIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVH  111 (216)
Q Consensus        77 ~l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~  111 (216)
                      +++||.++|.|++  +-+|++++..|+++|++|.++.
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~   39 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITY   39 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEe
Confidence            4689999999974  2359999999999999988764

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=94.37  E-value=0.15  Score=45.29  Aligned_cols=54  Identities=30%  Similarity=0.445  Sum_probs=41.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC----------------------------CCHHhhccCCCEEEEe
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t----------------------------~~l~~~~~~ADIVIsa  130 (216)
                      .+|.|+|+.|.||..++..|+..|.  +|+.+.+..                            .+ .+.+++||+||.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence            3799999955679999999999884  477776521                            12 3568999999999


Q ss_pred             cCCCC
Q 027976          131 AGVAN  135 (216)
Q Consensus       131 tg~p~  135 (216)
                      .|.|.
T Consensus        80 ag~p~   84 (309)
T cd05294          80 AGVPR   84 (309)
T ss_pred             cCCCC
Confidence            99754

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=94.36  E-value=0.1  Score=46.07  Aligned_cols=52  Identities=19%  Similarity=0.284  Sum_probs=42.4

Q ss_pred             EEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------CHHhhcc-CCCEEEEecCCC
Q 027976           83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITS-EADIVIAAAGVA  134 (216)
Q Consensus        83 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~-~ADIVIsatg~p  134 (216)
                      |+|-|+.|.+|+++...|.+.|.+|++..|+.+              .+.+... .+|.|||-.|.|
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~~   67 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGEP   67 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCCc
Confidence            578899999999999999999999999987642              2334444 599999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
4a26_A	300	The Crystal Structure Of Leishmania Major N5,N10- M		1e-53
1dia_A	306	Human Methylenetetrahydrofolate Dehydrogenase Cyclo		5e-45
1a4i_A	301	Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE		7e-45
4a5o_A	286	Crystal Structure Of Pseudomonas Aeruginosa N5, N10		5e-42
1b0a_A	288	5,10, Methylene-Tetrahydropholate DehydrogenaseCYCL		4e-39
3p2o_A	285	Crystal Structure Of Fold Bifunctional Protein From		3e-38
4b4u_A	303	Crystal Structure Of Acinetobacter Baumannii N5, N1		5e-35
3l07_A	285	Methylenetetrahydrofolate DehydrogenaseMETHENYLTETR		1e-34
2c2x_A	281	Three Dimensional Structure Of Bifunctional Methyle		3e-33
3ngl_A	276	Crystal Structure Of Bifunctional 5,10-Methylenetet		1e-21
1edz_A	320	Structure Of The Nad-Dependent 5,10- Methylenetetra		1e-05

>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10- Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE Length = 300

Iteration: 1
 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/217 (51%), Positives = 145/217 (66%), Gaps = 6/217 (2%)
Query: 3   VQKMKFLMPCQ-IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIP 61
           V+K+     C  II+++    HL+E + ++ +   KD D   P+N+G L  +GREP F P
Sbjct: 87  VEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTP 146
Query: 62  CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT 121
           CT KG I LL R G+E+ GK AVV+GRSNIVG P + LL + +ATV+IVH+ T   + I 
Sbjct: 147 CTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMID 206
Query: 122 --SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEA 179
               ADIVIAA G    V+G W+K GA V+DVGT PV    DPS + GYRL+GDVC+EEA
Sbjct: 207 YLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVP---DPSRKDGYRLVGDVCFEEA 263
Query: 180 MRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 216
              A+ I+PVPGGVGPMT+AMLL NTL++ K A G +
Sbjct: 264 AARAAWISPVPGGVGPMTIAMLLENTLEAFKAALGVS 300

>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase Cyclohydrolase Complexed With Nadp And Inhibitor Ly249543 Length = 306

Iteration: 1
 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 127/184 (69%), Gaps = 3/184 (1%)
Query: 28  KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG 87
           ++++A++ EKDVDG   +N G LA       FIPCTPKGC+EL+  +GV I G++AVV+G
Sbjct: 113 EVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVG 172
Query: 88  RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAV 147
           RS IVG P   LL  ++ATV+  H+ T + ++  ++ DI++ A G   +V+G W+KPGA+
Sbjct: 173 RSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAI 232
Query: 148 VLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLD 207
           V+D   C ++   D     G +++GDV Y+EA   AS ITPVPGGVGPMTVAML+ +T++
Sbjct: 233 VID---CGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVE 289
Query: 208 SAKR 211
           SAKR
Sbjct: 290 SAKR 293

>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE Length = 301

Iteration: 1
 Score =  176 bits (447), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 127/184 (69%), Gaps = 3/184 (1%)
Query: 28  KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG 87
           ++++A++ EKDVDG   +N G LA       FIPCTPKGC+EL+  +GV I G++AVV+G
Sbjct: 113 EVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVG 172
Query: 88  RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAV 147
           RS IVG P   LL  ++ATV+  H+ T + ++  ++ DI++ A G   +V+G W+KPGA+
Sbjct: 173 RSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAI 232
Query: 148 VLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLD 207
           V+D   C ++   D     G +++GDV Y+EA   AS ITPVPGGVGPMTVAML+ +T++
Sbjct: 233 VID---CGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVE 289
Query: 208 SAKR 211
           SAKR
Sbjct: 290 SAKR 293

>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10- Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Length = 286

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 126/200 (63%), Gaps = 11/200 (5%)
Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    HLD   +L+ +  +KDVDGFHP NIG LA R   PL  PCTPKG + LL  
Sbjct: 97  ILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQR--MPLLRPCTPKGIMTLLAS 154
Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
           +G ++ G +AVV+G SNIVG P +L L     TV++ H  T++     S AD+V+ AAG 
Sbjct: 155 TGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGK 214
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
             LV+G W+K GA+V+DVG          + +   RL+GDV YE A + AS ITPVPGGV
Sbjct: 215 PGLVKGEWIKEGAIVIDVGI---------NRQADGRLVGDVEYEVAAQRASWITPVPGGV 265
Query: 194 GPMTVAMLLSNTLDSAKRAY 213
           GPMT A LL NTL +A+  +
Sbjct: 266 GPMTRACLLENTLHAAEHLH 285

>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate DehydrogenaseCYCLOHYDROLASE FROM E COLI Length = 288

Iteration: 1
 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 112/185 (60%), Gaps = 11/185 (5%)
Query: 24  LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
           +D  K+L+ +  +KDVDGFHP N+G L  R   P   PCTP+G + LL R  ++  G NA
Sbjct: 105 IDNVKVLERIHPDKDVDGFHPYNVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTFGLNA 162
Query: 84  VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
           VVIG SNIVG P S+ L     T ++ H  TKN       AD++I A G    + G W+K
Sbjct: 163 VVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIK 222
Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
            GA+V+DVG            E G +++GDV +E+A + AS ITPVPGGVGPMTVA L+ 
Sbjct: 223 EGAIVIDVGIN--------RLENG-KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIE 273
Query: 204 NTLDS 208
           NTL +
Sbjct: 274 NTLQA 278

>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From Campylobacter Jejuni Length = 285

Iteration: 1
 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/189 (44%), Positives = 120/189 (63%), Gaps = 10/189 (5%)
Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+ +  IL+++   KDVDGFHP+N+G L + G E  F+PCTP G  +LL    +++ GK+
Sbjct: 104 HICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLGVXKLLKAYEIDLEGKD 162
Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AV+IG SNIVG P +  L    ATVS+ H  TK+    T +AD++I AAG  NL+R   +
Sbjct: 163 AVIIGASNIVGRPXATXLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDXV 222
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K G +V+DVG   ++           +++GDV +EE  + +S ITPVPGGVGP T+A LL
Sbjct: 223 KEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYITPVPGGVGPXTIAXLL 273
Query: 203 SNTLDSAKR 211
            NT+ SAK 
Sbjct: 274 ENTVKSAKN 282

>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp Cofactor Length = 303

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 117/192 (60%), Gaps = 12/192 (6%)
Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
            +DE    DA+SL KDVDG   L  G +AM   E  +   TP G + +L  + +EI GK+
Sbjct: 124 QIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIEIAGKH 181
Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVV+GRS I+G P +++L + +ATV+I H+ T+N  ++  +ADI++ A G A L++  W+
Sbjct: 182 AVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWI 241
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K GAVV+D G  P D             +GD+  +    +AS  TPVPGGVGPMT+  L+
Sbjct: 242 KQGAVVVDAGFHPRDGGG----------VGDIQLQGIEEIASAYTPVPGGVGPMTITTLI 291
Query: 203 SNTLDSAKRAYG 214
             T+++A++A G
Sbjct: 292 RQTVEAAEKALG 303

>pdb|3L07|A Chain A, Methylenetetrahydrofolate DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase, Putative Bifunctional Protein Fold From Francisella Tularensis. Length = 285

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/198 (39%), Positives = 116/198 (58%), Gaps = 11/198 (5%)
Query: 14  IIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR 73
           I++++    H+++  ++ ++  EKDVDGFHP N+G L +R ++ L   CTPKG + +L  
Sbjct: 96  ILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLE-SCTPKGIMTMLRE 154
Query: 74  SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGV 133
            G++  G  AVV+G SN+VG P S LL    ATV+  H  T + +  T++ADI+I A G 
Sbjct: 155 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGK 214
Query: 134 ANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 193
            N +    +K GAVV+DVG   VD           +++GDV +       + ITPVPGGV
Sbjct: 215 PNFITADMVKEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAAITPVPGGV 264
Query: 194 GPMTVAMLLSNTLDSAKR 211
           GPMT+  LL NT   A+ 
Sbjct: 265 GPMTITELLYNTFQCAQE 282

>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase From Mycobacterium Tuberculosis Length = 281

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 15/199 (7%)
Query: 15  IIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRS 74
           I+++    HLDE   L+ V   KD DG HP N+G L +    PL  PCTP+G + LL R 
Sbjct: 95  IVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVLGTPAPL--PCTPRGIVHLLRRY 152
Query: 75  GVEIMGKNAVVIGRSNIVGLPTSLLLQR--HHATVSIVHALTKNPEQITSEADIVIAAAG 132
            + I G + VVIGR   VG P  LLL R   +ATV++ H  T++   +T +ADIV+AA G
Sbjct: 153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQADIVVAAVG 212
Query: 133 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 192
           VA+L+    ++PGA V+DVG    D            L+GDV + +   LA  ++P PGG
Sbjct: 213 VAHLLTADMVRPGAAVIDVGVSRTDDG----------LVGDV-HPDVWELAGHVSPNPGG 261
Query: 193 VGPMTVAMLLSNTLDSAKR 211
           VGP+T A LL+N ++ A+R
Sbjct: 262 VGPLTRAFLLTNVVELAER 280

>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional 5,10-Methylenetetrahydrofolate Dehydrogenase CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM Length = 276

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 99/188 (52%), Gaps = 16/188 (8%)
Query: 24  LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
            D  +I+  +   KDVD   P N G +A+  RE   +P TP+  I+++   G     +N 
Sbjct: 98  FDYYEIVRNIPYYKDVDALSPYNQGLIAL-NRE-FLVPATPRAVIDIMDYYGYH---ENT 152
Query: 84  V-VIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           V ++ RS +VG P S++L   + TVS+ H+ TK+   +T  + IV+ A G    +    +
Sbjct: 153 VTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMV 212
Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
            PG+VV+DVG   V+  V          +GD  +E+       ITPVPGGVGP+T   +L
Sbjct: 213 TPGSVVIDVGINYVNDKV----------VGDANFEDLSEYVEAITPVPGGVGPITATNIL 262
Query: 203 SNTLDSAK 210
            N + +A+
Sbjct: 263 ENVVKAAE 270

>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10- Methylenetetrahydrofolate Dehydrogenase From Saccharomyces Cerevisiae Length = 320

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 83/202 (41%), Gaps = 41/202 (20%)
Query: 36  EKDVDGFHPL-------NIGNLAMRGREPLFIPCTPKGCIELL---------IRSGVEIM 79
           EKDV+G + +       N+  L    R    +PCTP   +++L         +  G  + 
Sbjct: 117 EKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLY 176
Query: 80  GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRG 139
           GK  +VI RS IVG P + LL    ATV  V     N ++ T    + +    V +L   
Sbjct: 177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDV--NNIQKFTRGESLKLNKHHVEDLGEY 234
Query: 140 S--WLKPGAVVLDVGTCPVDVSVDPSCEYG----YRLMGDVC---------YEEAMRLAS 184
           S   LK  ++  DV    V     PS  Y     Y   G VC          ++    AS
Sbjct: 235 SEDLLKKCSLDSDVVITGV-----PSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKAS 289
Query: 185 VITPVPGGVGPMTVAMLLSNTL 206
           +  P+ G V   T+AMLL N L
Sbjct: 290 LYVPMTGKV---TIAMLLRNML 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	1e-112
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	1e-110
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	7e-99
3l07_A	285	Bifunctional protein fold; structural genomics, ID	8e-99
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	9e-99
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	9e-99
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	4e-94
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	1e-90
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	1e-71
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	3e-09
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	5e-04

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} Length = 300

 Score =  322 bits (827), Expect = e-112
 Identities = 105/194 (54%), Positives = 134/194 (69%), Gaps = 5/194 (2%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           HL+E + ++ +   KD D   P+N+G L  +GREP F PCT KG I LL R G+E+ GK 
Sbjct: 108 HLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKR 167

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--TKNPEQITSEADIVIAAAGVANLVRGS 140
           AVV+GRSNIVG P + LL + +ATV+IVH+   T++       ADIVIAA G    V+G 
Sbjct: 168 AVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGE 227

Query: 141 WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAM 200
           W+K GA V+DVGT PV    DPS + GYRL+GDVC+EEA   A+ I+PVPGGVGPMT+AM
Sbjct: 228 WIKEGAAVVDVGTTPVP---DPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAM 284

Query: 201 LLSNTLDSAKRAYG 214
           LL NTL++ K A G
Sbjct: 285 LLENTLEAFKAALG 298

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* Length = 301

 Score =  317 bits (816), Expect = e-110
 Identities = 89/191 (46%), Positives = 128/191 (67%), Gaps = 3/191 (1%)

Query: 24  LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNA 83
           ++  ++++A++ EKDVDG   +N G LA       FIPCTPKGC+EL+  +GV I G++A
Sbjct: 109 INTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHA 168

Query: 84  VVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK 143
           VV+GRS IVG P   LL  ++ATV+  H+ T + ++  ++ DI++ A G   +V+G W+K
Sbjct: 169 VVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIK 228

Query: 144 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 203
           PGA+V+D G   V    D     G +++GDV Y+EA   AS ITPVPGGVGPMTVAML+ 
Sbjct: 229 PGAIVIDCGINYVP---DDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQ 285

Query: 204 NTLDSAKRAYG 214
           +T++SAKR   
Sbjct: 286 STVESAKRFLE 296

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 Length = 288

 Score =  287 bits (738), Expect = 7e-99
 Identities = 83/193 (43%), Positives = 114/193 (59%), Gaps = 11/193 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
            +D  K+L+ +  +KDVDGFHP N+G L  R   P   PCTP+G + LL R  ++  G N
Sbjct: 104 GIDNVKVLERIHPDKDVDGFHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLN 161

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVVIG SNIVG P S+ L     T ++ H  TKN       AD++I A G    + G W+
Sbjct: 162 AVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWI 221

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K GA+V+DVG   ++   +       +++GDV +E+A + AS ITPVPGGVGPMTVA L+
Sbjct: 222 KEGAIVIDVGINRLE---NG------KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLI 272

Query: 203 SNTLDSAKRAYGF 215
            NTL +    +  
Sbjct: 273 ENTLQACVEYHDP 285

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} Length = 285

 Score =  287 bits (737), Expect = 8e-99
 Identities = 77/190 (40%), Positives = 109/190 (57%), Gaps = 11/190 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+++  ++ ++  EKDVDGFHP N+G L +R  +     CTPKG + +L   G++  G  
Sbjct: 105 HINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAY 163

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVV+G SN+VG P S LL    ATV+  H  T + +  T++ADI+I A G  N +    +
Sbjct: 164 AVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMV 223

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K GAVV+DVG   VD           +++GDV +       + ITPVPGGVGPMT+  LL
Sbjct: 224 KEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELL 273

Query: 203 SNTLDSAKRA 212
            NT   A+  
Sbjct: 274 YNTFQCAQEL 283

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} Length = 286

 Score =  287 bits (737), Expect = 9e-99
 Identities = 93/191 (48%), Positives = 119/191 (62%), Gaps = 11/191 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           HLD   +L+ +  +KDVDGFHP NIG LA R   PL  PCTPKG + LL  +G ++ G +
Sbjct: 106 HLDASLLLERIHPDKDVDGFHPYNIGRLAQR--MPLLRPCTPKGIMTLLASTGADLYGMD 163

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AVV+G SNIVG P +L L     TV++ H  T++     S AD+V+ AAG   LV+G W+
Sbjct: 164 AVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWI 223

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K GA+V+DVG                RL+GDV YE A + AS ITPVPGGVGPMT A LL
Sbjct: 224 KEGAIVIDVGINRQA---------DGRLVGDVEYEVAAQRASWITPVPGGVGPMTRACLL 274

Query: 203 SNTLDSAKRAY 213
            NTL +A+  +
Sbjct: 275 ENTLHAAEHLH 285

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} Length = 285

 Score =  287 bits (737), Expect = 9e-99
 Identities = 87/189 (46%), Positives = 124/189 (65%), Gaps = 10/189 (5%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           H+ +  IL+++   KDVDGFHP+N+G L + G E  F+PCTP G ++LL    +++ GK+
Sbjct: 104 HICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKD 162

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
           AV+IG SNIVG P + +L    ATVS+ H  TK+    T +AD++I AAG  NL+R   +
Sbjct: 163 AVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMV 222

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
           K G +V+DVG   ++           +++GDV +EE  + +S ITPVPGGVGPMT+AMLL
Sbjct: 223 KEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLL 273

Query: 203 SNTLDSAKR 211
            NT+ SAK 
Sbjct: 274 ENTVKSAKN 282

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A Length = 276

 Score =  275 bits (706), Expect = 4e-94
 Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 14/189 (7%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
             D  +I+  +   KDVD   P N G +A+       +P TP+  I+++   G       
Sbjct: 97  GFDYYEIVRNIPYYKDVDALSPYNQGLIALN--REFLVPATPRAVIDIMDYYGYH--ENT 152

Query: 83  AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL 142
             ++ RS +VG P S++L   + TVS+ H+ TK+   +T  + IV+ A G    +    +
Sbjct: 153 VTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMV 212

Query: 143 KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL 202
            PG+VV+DVG   V+           +++GD  +E+       ITPVPGGVGP+T   +L
Sbjct: 213 TPGSVVIDVGINYVND----------KVVGDANFEDLSEYVEAITPVPGGVGPITATNIL 262

Query: 203 SNTLDSAKR 211
            N + +A+ 
Sbjct: 263 ENVVKAAEF 271

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A Length = 281

 Score =  266 bits (682), Expect = 1e-90
 Identities = 82/191 (42%), Positives = 113/191 (59%), Gaps = 15/191 (7%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKN 82
           HLDE   L+ V   KD DG HP N+G L +    P  +PCTP+G + LL R  + I G +
Sbjct: 103 HLDENAALERVDPAKDADGLHPTNLGRLVLG--TPAPLPCTPRGIVHLLRRYDISIAGAH 160

Query: 83  AVVIGRSNIVGLPTSLLLQR--HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGS 140
            VVIGR   VG P  LLL R   +ATV++ H  T++   +T +ADIV+AA GVA+L+   
Sbjct: 161 VVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTAD 220

Query: 141 WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAM 200
            ++PGA V+DVG    D            L+GDV + +   LA  ++P PGGVGP+T A 
Sbjct: 221 MVRPGAAVIDVGVSRTDD----------GLVGDV-HPDVWELAGHVSPNPGGVGPLTRAF 269

Query: 201 LLSNTLDSAKR 211
           LL+N ++ A+R
Sbjct: 270 LLTNVVELAER 280

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* Length = 320

 Score =  219 bits (560), Expect = 1e-71
 Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 63/231 (27%)

Query: 23  HLDEGKILDAVSLEKDVDGFHPLNIGNL-------AMRGREPLFIPCTPKGCIELL---- 71
           +  +  +   V  EKDV+G + +   NL           R    +PCTP   +++L    
Sbjct: 104 NAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLK 163

Query: 72  -----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------- 116
                +  G  + GK  +VI RS IVG P + LL    ATV  V                
Sbjct: 164 IYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKL 223

Query: 117 ---------------PEQITSEADIVIAAAGVAN-LVRGSWLKPGAVVLDVGTCPVDVSV 160
                           ++ + ++D+VI      N      ++K GAV ++          
Sbjct: 224 NKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNF--- 280

Query: 161 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 211
                           ++    AS+  P+ G V   T+AMLL N L   + 
Sbjct: 281 ---------------SDDVKEKASLYVPMTGKV---TIAMLLRNMLRLVRN 313

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 54.6 bits (131), Expect = 3e-09
 Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 33/163 (20%)

Query: 63  TPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT 121
           T +G I + I+ +   I G N  V+G   + G+  +       A V +    +    +I 
Sbjct: 137 TAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIA 195

Query: 122 S----------------EADIVIAA--AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 163
                            + D+ I    A V      + +     V+D+ + P       +
Sbjct: 196 EMGMEPFHISKAAQELRDVDVCINTIPALVVTANVLAEMPSHTFVIDLASKPGGTDFRYA 255

Query: 164 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 206
            + G + +              +  +PG V P T   +L++ L
Sbjct: 256 EKRGIKALL-------------VPGLPGIVAPKTAGRILADVL 285

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 29/167 (17%), Positives = 50/167 (29%), Gaps = 41/167 (24%)

Query: 63  TPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV----------- 110
           T +G I L I  +   I G    V+G     G+  +       A V +            
Sbjct: 139 TVEGTIMLAIQHTDYTIHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARIT 197

Query: 111 -----HALTKNPEQITSEADIVIAAAGVANLVRG--SWLKPGAVVLDVGTCPVDVSVDPS 163
                   T   ++   + DI I       L +   S + P  ++       +D++  P 
Sbjct: 198 EMGLVPFHTDELKEHVKDIDICINTIPSMILNQTVLSSMTPKTLI-------LDLASRPG 250

Query: 164 CEYGYRLMGDVCYEEAMRLASVI----TPVPGGVGPMTVAMLLSNTL 206
                         +      +       +PG V P T   +L+N L
Sbjct: 251 G----------TDFKYAEKQGIKALLAPGLPGIVAPKTAGQILANVL 287

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	100.0
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	100.0
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	100.0
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	100.0
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	100.0
3l07_A	285	Bifunctional protein fold; structural genomics, ID	100.0
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	100.0
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	100.0
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	100.0
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	100.0
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	99.97
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	99.97
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	99.96
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	99.96
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	99.96
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	99.96
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	99.96
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	99.96
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	99.95
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	99.95
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	99.95
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	99.95
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	99.94
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	99.93
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.92
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.92
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	99.91
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	99.77
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	99.56
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.4
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.2
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.17
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.08
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.88
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.84
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.81
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.81
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.79
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.75
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.72
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.54
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.5
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.49
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.49
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.47
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.46
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	98.39
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.33
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.29
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.27
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.27
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.26
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.26
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.25
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.24
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.21
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.21
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.21
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.21
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.21
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.2
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.2
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.19
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.18
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.16
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.16
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.16
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.16
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.15
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.14
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.14
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.14
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.13
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.12
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.11
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.11
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.1
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.08
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.07
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.06
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.05
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.04
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.03
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.02
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.02
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.01
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.99
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.97
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.97
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.92
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.89
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	97.87
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.84
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.84
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.81
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.8
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.78
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.78
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.73
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.73
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.7
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.7
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.7
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.68
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.65
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.62
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.58
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.58
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.58
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.57
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.56
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.54
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.54
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	97.52
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.49
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.49
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.48
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.48
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.46
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.41
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.39
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.37
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.32
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.3
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.28
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.27
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.27
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	97.26
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.25
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.24
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.22
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.22
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.21
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.21
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.21
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.29
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.18
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.18
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.16
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.16
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.16
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.15
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.14
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	97.14
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	97.14
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.1
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.1
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	97.1
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.1
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.09
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.09
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.08
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.08
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.07
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.07
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.06
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.05
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.05
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.05
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.04
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.03
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.02
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	97.02
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.02
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.01
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.01
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.01
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.01
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.99
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.98
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.98
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.97
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.97
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.97
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.96
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.96
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.96
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.95
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.94
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.94
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.94
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.94
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.93
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.92
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	96.92
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.9
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.9
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.9
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.9
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.9
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.89
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.88
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.88
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.88
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.87
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.86
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.86
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.85
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.85
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.85
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.85
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.85
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.84
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.84
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.84
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.84
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.83
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.82
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.81
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.81
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.8
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.8
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.8
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.79
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.78
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.78
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.77
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.77
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.76
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.76
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.76
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.75
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.75
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.75
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.75
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.75
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.75
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.74
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.74
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.74
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.73
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.73
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.73
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.72
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.72
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.71
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.71
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.71
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.71
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.71
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.71
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.69
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.69
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.69
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.69
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.69
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	96.69
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.68
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.68
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.68
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.68
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.68
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.68
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.68
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.67
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.67
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.66
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.66
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.66
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.66
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.66
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.65
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.65
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.65
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.65
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.65
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.65
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.64
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.64
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.63
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.63
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.63
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.63
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.63
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.62
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.62
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.61
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.61
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	96.61
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.6
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.6
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.59
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.58
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.58
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.58
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.57
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.56
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.56
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.56
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.55
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.55
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.55
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.55
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.54
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.54
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.54
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.54
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.54
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.54
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.53
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.53
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.53
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.53
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.53
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.53
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.52
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.52
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.52
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.51
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.51
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.51
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.5
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.5
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.5
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.49
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.49
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.49
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.48
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.48
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.48
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.47
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.47
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.46
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.45
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.44
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.44
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.44
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.43
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.43
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.43
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.42
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.42
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	96.42
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.42
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.41
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.4
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.38
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.38
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.38
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.37
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.37
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.36
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.35
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.35
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.35
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.34
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.34
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	96.34
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	96.33
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.33
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	96.33
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.32
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.32
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.32
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.32
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.31
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.31
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.31
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.31
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.31
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.31
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.3
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.3
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.29
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.29
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.28
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.28
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.28
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	96.27
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	96.27
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.27
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.27
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.26
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.24
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.24
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.24
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	96.24
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.24
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.24
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.23
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.23
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.22
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.21
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.21
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.21
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.21
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.2
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.2
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.19
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.19
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.18
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.18
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.17
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.16
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.16
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	96.16
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.16
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	96.16
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	96.15
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.15
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.15
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.15
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.14
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.14
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.14
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.13
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.13
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.13
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.13
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.12
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.12
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.11
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.11
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.1
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.1
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.1
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	96.07
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.07
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.07
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.06
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.06
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.06
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.06
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.06
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.05
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.05
4f6c_A	427	AUSA reductase domain protein; thioester reductase	96.05
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	96.05
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.04
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.04
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.03
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	96.03
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.03
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.03
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.02
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.02
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.01
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	96.01
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	96.0
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.99
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	95.98
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	95.98
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	95.98
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	95.98
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	95.97
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	95.97
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	95.97
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	95.97
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	95.96
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.96
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.96
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.96
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	95.96
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.95
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.95
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	95.95
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	95.94
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	95.93
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	95.93
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	95.93
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	95.92
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.92
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.92
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.91
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	95.91
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	95.91
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	95.91
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	95.9
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	95.9
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.89
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	95.89
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	95.88
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.87
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.87
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	95.87
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.87
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.86
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	95.86
1xkq_A	280	Short-chain reductase family member (5D234); parra	95.86
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.85
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	95.84
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	95.83
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.83
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.83
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	95.83
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.82
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.82
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	95.82
2duw_A	145	Putative COA-binding protein; ligand binding prote	95.81
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	95.81
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	95.8
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.8
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	95.8
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	95.79
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.78
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.77
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	95.76
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	95.76
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.76

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=100.00  E-value=2.3e-67  Score=459.73  Aligned_cols=194  Identities=41%  Similarity=0.670  Sum_probs=188.5

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -.+|||+||+|||+|+|+++++++|+|+|||||||+.|.|+|+.|  .+.|+||||.|++++|++|+++++||+++|||+
T Consensus       110 ~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDG~hp~N~G~L~~g--~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvViGR  187 (303)
T 4b4u_A          110 PDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIEIAGKHAVVVGR  187 (303)
T ss_dssp             TTCCEEEECSSCCTTSCHHHHHHHSCGGGCTTCCCHHHHHHHHTT--CCCCCCHHHHHHHHHHHHTTCCCTTCEEEEECC
T ss_pred             CCccEEEEeCCCccccChHHHHhccCcccccCccCcchHHHhcCC--CCcccCccHHHHHHHHHHHCCCCCCCEEEEEec
Confidence            579999999999999999999999999999999999999999976  688999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |..||||++++|++++|+||+||+.|++|++++++|||||+|+|+|++++++|+|+|++|||+|+|+.+          +
T Consensus       188 S~iVGkPla~LL~~~~ATVTi~Hs~T~dl~~~~~~ADIvV~A~G~p~~i~~d~vk~GavVIDVGin~~~----------~  257 (303)
T 4b4u_A          188 SAILGKPMAMMLLQANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRD----------G  257 (303)
T ss_dssp             CTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHHTCSEEEECSCSTTCBCGGGSCTTCEEEECCCBCCT----------T
T ss_pred             cccccchHHHHHHhcCCEEEEecCCCCCHHHHhhcCCeEEeccCCCCccccccccCCCEEEEeceecCC----------C
Confidence            999999999999999999999999999999999999999999999999999999999999999999876          4


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      +++|||||++++++++++|||||||||||++|||+|+++|+||..|
T Consensus       258 ~~vGDVdf~~v~~~a~~iTPVPGGVGPmTiamLl~Ntv~aa~r~~G  303 (303)
T 4b4u_A          258 GGVGDIQLQGIEEIASAYTPVPGGVGPMTITTLIRQTVEAAEKALG  303 (303)
T ss_dssp             SCBCSBCCTTGGGTCSEECCSSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CeECCcCHHHHhhhCcEECCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999876

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=100.00  E-value=1.5e-65  Score=448.98  Aligned_cols=211  Identities=52%  Similarity=0.841  Sum_probs=196.0

Q ss_pred             hhhccc-cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCC
Q 027976            3 VQKMKF-LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGK   81 (216)
Q Consensus         3 ~~~~~~-~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk   81 (216)
                      ++++.+ -++|||+||+|||+|+++++++++|+|+|||||+|++|.|+|+.|...++|+||||.|++++|++++++++||
T Consensus        87 I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~~PcTp~gv~~lL~~~~i~l~Gk  166 (300)
T 4a26_A           87 VEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGK  166 (300)
T ss_dssp             HHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHCTTCCCSCCCHHHHHHHHHHHHHTCCCTTC
T ss_pred             HHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCCcceEEEeecCCCcCCCCCCCHHHHHHHHHHcCCCCCCC
Confidence            344443 3799999999999999999999999999999999999999998774467899999999999999999999999


Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHH--hhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPE--QITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVS  159 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~--~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~  159 (216)
                      +++|||+|+.||+|++++|+++||+||+|||.|.+++  +.+++|||||+|+|.|++++.+|+++|++|||++++|.+  
T Consensus       167 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~--  244 (300)
T 4a26_A          167 RAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVP--  244 (300)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHHHTCSEEEECSCCTTCBCGGGSCTTCEEEECCCEEES--
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhhccCCEEEECCCCCCCCcHHhcCCCcEEEEEeccCCc--
Confidence            9999999999999999999999999999999999999  999999999999999999999999999999999999987  


Q ss_pred             CCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 027976          160 VDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  216 (216)
Q Consensus       160 ~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~~  216 (216)
                       |++++++.+++|||||++++++++++|||||||||||++|||+|+++++++|.+.+
T Consensus       245 -~~~~~~g~kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~~~~  300 (300)
T 4a26_A          245 -DPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKAALGVS  300 (300)
T ss_dssp             -CSCSTTSCEEECSBCHHHHTTTCSEEECTTTSSSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             -CCcccCCceeecCccHHHHHhhceEeCCCCCcChHHHHHHHHHHHHHHHHHHhcCC
Confidence             44433445899999999999999999999999999999999999999999998764

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=100.00  E-value=4.2e-65  Score=443.31  Aligned_cols=201  Identities=47%  Similarity=0.750  Sum_probs=190.6

Q ss_pred             hhhccc-cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCC
Q 027976            3 VQKMKF-LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGK   81 (216)
Q Consensus         3 ~~~~~~-~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk   81 (216)
                      ++++.+ -++|||+||+|||+|+++++++++|+|+|||||+|++|.|+|+.|  .++|+||||.|++++|++|+++++||
T Consensus        85 I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~g~l~~g--~~~~~PcTp~gv~~lL~~~~i~l~Gk  162 (286)
T 4a5o_A           85 IDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQR--MPLLRPCTPKGIMTLLASTGADLYGM  162 (286)
T ss_dssp             HHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGGGCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTTC
T ss_pred             HHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcccccccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            344544 379999999999999999999999999999999999999999877  67899999999999999999999999


Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD  161 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~  161 (216)
                      +++|||+|+.||+|+|++|+++||+||+||+.|+++++.+++|||||+|+|.|++++.+|+|+|++|||++++|.+   |
T Consensus       163 ~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~---~  239 (286)
T 4a5o_A          163 DAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQA---D  239 (286)
T ss_dssp             EEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHTCSEEEECCCCTTCBCGGGSCTTCEEEECCSCSSC---C
T ss_pred             EEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHhccCCEEEECCCCCCCCCHHHcCCCeEEEEecccccc---c
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999976   1


Q ss_pred             CCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          162 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       162 ~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                            ++++|||||++++++++++|||||||||||++|||+|+++++++|.+
T Consensus       240 ------gkl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~aa~~~~~  286 (286)
T 4a5o_A          240 ------GRLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLHD  286 (286)
T ss_dssp             ------CCSSCSBCHHHHHHHCSEECCSSCSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ------CCcccCccHHHHHhhceEeCCCCCcchHHHHHHHHHHHHHHHHHhcC
Confidence                  48999999999999999999999999999999999999999998754

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=100.00  E-value=3.8e-65  Score=443.69  Aligned_cols=201  Identities=43%  Similarity=0.700  Sum_probs=189.6

Q ss_pred             hhhccc-cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCc-cCCCcHHHHHHHHHHhCCCCCC
Q 027976            3 VQKMKF-LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPL-FIPCTPKGCIELLIRSGVEIMG   80 (216)
Q Consensus         3 ~~~~~~-~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~-~~p~Ta~g~~~~L~~~~~~l~g   80 (216)
                      ++++.+ -++|||+||+|||+|+++++++++|+|+|||||+|++|.|+|+.|  .+. |+||||.|++++|++++++++|
T Consensus        83 I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDg~~~~N~g~l~~g--~~~g~~PcTp~gv~~lL~~~~i~l~G  160 (285)
T 3p2o_A           83 INTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLG--LESGFLPCTPLGVMKLLKAYEIDLEG  160 (285)
T ss_dssp             HHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCCSHHHHHHHHTT--CCSSCCCHHHHHHHHHHHHTTCCCTT
T ss_pred             HHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcccccccCCHhhhhhhhcC--CCCCCCCCCHHHHHHHHHHhCCCCCC
Confidence            345554 479999999999999999999999999999999999999999877  455 9999999999999999999999


Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV  160 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~  160 (216)
                      |+++|||+|+.||+|+|++|+++||+||+|||+++++++++++|||||+|+|+|++++++|+|+|++|||++++|.+   
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~~~---  237 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLE---  237 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHTTCSEEEECSSCTTCBCGGGSCTTEEEEECCCEECT---
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHhhcCCEEEECCCCCCcCCHHHcCCCeEEEEeccCccc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999976   


Q ss_pred             CCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          161 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       161 ~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      |      ++++|||||++++++++++|||||||||||++|||+|+++++++|++
T Consensus       238 ~------gkl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~a~~~~~~  285 (285)
T 3p2o_A          238 S------GKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRLN  285 (285)
T ss_dssp             T------SCEECSBCHHHHTTTEEEECCSSSSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             C------CCEeccccHHHHHhhheEeCCCCCcCcHHHHHHHHHHHHHHHHHhhC
Confidence            1      48999999999999999999999999999999999999999998763

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=100.00  E-value=1.4e-64  Score=442.74  Aligned_cols=204  Identities=44%  Similarity=0.740  Sum_probs=187.0

Q ss_pred             cCccEEEEccCCCCC--CCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEE
Q 027976            9 LMPCQIIIRIHQLMH--LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVI   86 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~--~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~Vi   86 (216)
                      -.+|||+||+|||+|  +|+++++++|+|+|||||||+.|.|+|+.|..+++|+||||.|++++|++++++++||+|+||
T Consensus        92 ~~V~GIlvqlPLP~~~~id~~~i~~~I~p~KDVDG~hp~N~G~l~~g~~~~~~~PcTp~gi~~ll~~~~i~l~gk~vvVI  171 (301)
T 1a4i_A           92 STVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVV  171 (301)
T ss_dssp             TTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTCCSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTTTCCCTTCEEEEE
T ss_pred             CCCcEEEEeccCCCCCccCHHHHHhccCCCCCccCCChhhHHHHhcCCCCCCccCchHHHHHHHHHHcCCCCCCCEEEEE
Confidence            579999999999999  999999999999999999999999999987434789999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCC
Q 027976           87 GRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEY  166 (216)
Q Consensus        87 G~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~  166 (216)
                      |+|+.||+++|++|+++||+||+||++++++.+++++|||||+|+|+|++|+++|+++|++|||+++++.+   |+++.+
T Consensus       172 G~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~~~---d~~~~~  248 (301)
T 1a4i_A          172 GRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVP---DDKKPN  248 (301)
T ss_dssp             CCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCBC-----------
T ss_pred             CCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHhccCCEEEECCCCcccCCHHHcCCCcEEEEccCCCcc---cccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875   333233


Q ss_pred             CCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          167 GYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       167 ~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      |.+++|||||++++++++++|||||||||||++|||+|+++++++|+..
T Consensus       249 g~klvGDVdf~~v~~~a~~iTPVPGGVGpmTiamLl~Ntv~aa~~~~~~  297 (301)
T 1a4i_A          249 GRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLEK  297 (301)
T ss_dssp             --CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCeeeccccHHHhhhhceEeCCCCCCccHHHHHHHHHHHHHHHHHHhhc
Confidence            4589999999999999999999999999999999999999999998753

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=100.00  E-value=1.6e-64  Score=439.74  Aligned_cols=200  Identities=39%  Similarity=0.654  Sum_probs=189.4

Q ss_pred             hhhccc-cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCC
Q 027976            3 VQKMKF-LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGK   81 (216)
Q Consensus         3 ~~~~~~-~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk   81 (216)
                      ++++.+ -++|||+||+|||+|+++++++++|+|+|||||+|++|.|+|+.|. .++|+||||.|++++|++++++++||
T Consensus        84 I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~~~~N~G~l~~g~-~~~~~PcTp~gv~~lL~~~~i~l~Gk  162 (285)
T 3l07_A           84 IDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGA  162 (285)
T ss_dssp             HHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCSHHHHHHHHHTC-TTCCCCHHHHHHHHHHHHTTCCCTTC
T ss_pred             HHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccCChhheeehhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence            344544 4799999999999999999999999999999999999999998772 27899999999999999999999999


Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD  161 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~  161 (216)
                      +++|||+|+.||+|++++|+++||+||+|||+++++.+++++|||||+|+|+|++++++|+|+|++|||++++|.+    
T Consensus       163 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~----  238 (285)
T 3l07_A          163 YAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVD----  238 (285)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCEEET----
T ss_pred             EEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhcccCCEEEECCCCCCCCCHHHcCCCcEEEEecccCcC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999976    


Q ss_pred             CCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          162 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       162 ~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                            ++++|||||++++++++++|||||||||||++|||+|++++++++.
T Consensus       239 ------g~l~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~a~~~~~  284 (285)
T 3l07_A          239 ------GKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN  284 (285)
T ss_dssp             ------TEEECSBCHHHHTTTCSEECCSSSSSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------CceecCccHHHHHhhheEeCCCCCcChHHHHHHHHHHHHHHHHHhh
Confidence                  4999999999999999999999999999999999999999999864

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=100.00  E-value=3.9e-64  Score=437.62  Aligned_cols=197  Identities=43%  Similarity=0.707  Sum_probs=188.8

Q ss_pred             ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976            8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG   87 (216)
Q Consensus         8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG   87 (216)
                      +-.+|||+||+|||+|+|+++++++|+|+|||||||+.|.|+|+.|  .++|+||||.|++++|++++++++||+|+|||
T Consensus        89 D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG  166 (288)
T 1b0a_A           89 DNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIG  166 (288)
T ss_dssp             CTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTTCEEEEEC
T ss_pred             CCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCCccchhHHhCC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEEC
Confidence            3579999999999999999999999999999999999999999987  57899999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCC
Q 027976           88 RSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG  167 (216)
Q Consensus        88 ~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~  167 (216)
                      +|++||+|+|++|+++||+||+||++++++.+++++|||||+|+|+|++++++|+|+|++|||+++++.+   |      
T Consensus       167 ~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~lI~~~~vk~GavVIDVgi~r~~---~------  237 (288)
T 1b0a_A          167 ASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLE---N------  237 (288)
T ss_dssp             CCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHHHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEECT---T------
T ss_pred             CChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHhccCCEEEECCCCcCcCCHHHcCCCcEEEEccCCccC---C------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999875   1      


Q ss_pred             CeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          168 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       168 ~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      ++++|||||++++++++++|||||||||||++|||+|+++++++|+..
T Consensus       238 g~l~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~~~  285 (288)
T 1b0a_A          238 GKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDP  285 (288)
T ss_dssp             SCEECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCccCCcCHHHHhhhccEecCCCCCccHHHHHHHHHHHHHHHHHhhcc
Confidence            489999999999999999999999999999999999999999988753

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=100.00  E-value=2e-63  Score=430.89  Aligned_cols=191  Identities=31%  Similarity=0.515  Sum_probs=183.9

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcC
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGR   88 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~   88 (216)
                      -++|||+||+|||+|+++++++++|+|+|||||||++|.|+|+.|  .++|+||||.|++++|++++  ++||+++|||+
T Consensus        83 ~~v~GIlvqlPLP~~id~~~v~~~I~p~KDVDG~~p~n~G~l~~g--~~~~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~  158 (276)
T 3ngx_A           83 PQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIALN--REFLVPATPRAVIDIMDYYG--YHENTVTIVNR  158 (276)
T ss_dssp             TTCCEEEECSCCCTTCCHHHHHTTSCGGGBTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHHT--CCSCEEEEECC
T ss_pred             CCCcEEEEeCCCCCCCCHHHHHhhCCCCCcccCCCccchhhhhcC--CCCCCCCcHHHHHHHHHHhC--cCCCEEEEEcC
Confidence            579999999999999999999999999999999999999999987  67899999999999999998  99999999999


Q ss_pred             CchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCC
Q 027976           89 SNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  168 (216)
Q Consensus        89 gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~  168 (216)
                      |+.||+|+|++|+++||+||+||++++++++++++|||||+|+|+|++++++|+|+|++|||++++| +   |      +
T Consensus       159 s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~-~---~------g  228 (276)
T 3ngx_A          159 SPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINY-V---N------D  228 (276)
T ss_dssp             CTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHHSSEEEECSSCTTCBCGGGCCTTCEEEECCCEE-E---T------T
T ss_pred             ChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhhccCCEEEECCCCCccccHhhccCCcEEEEeccCc-c---C------C
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 5   1      4


Q ss_pred             eEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          169 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       169 ~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      +++|||||++++++++++|||||||||||++|||+|+++++++..
T Consensus       229 kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~n~v~a~~~~~  273 (276)
T 3ngx_A          229 KVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAEFQK  273 (276)
T ss_dssp             EEECSBCHHHHHTTSSEECCTTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeccccHHHHhhhceEeCCCCCcChHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999998754

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=100.00  E-value=7.9e-62  Score=421.84  Aligned_cols=191  Identities=43%  Similarity=0.709  Sum_probs=183.4

Q ss_pred             ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEc
Q 027976            8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG   87 (216)
Q Consensus         8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG   87 (216)
                      +-.+|||+||+|||+|+|+++++++|+|+|||||||+.|.|+|+.|  .++|+||||+|++++|++++++++||+++|||
T Consensus        88 D~~v~GIlvqlPlP~~id~~~i~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG  165 (281)
T 2c2x_A           88 NPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVLG--TPAPLPCTPRGIVHLLRRYDISIAGAHVVVIG  165 (281)
T ss_dssp             CTTCCEEEECSCCCTTSCHHHHHHHSCGGGBTTSCCHHHHHHHHHT--CCCCCCHHHHHHHHHHHHTTCCCTTCEEEEEC
T ss_pred             CCCCCEEEEeCCCCCCCCHHHHHhhcCccCCccCCChhhHHHHhCC--CCCCCCChHHHHHHHHHHcCCCCCCCEEEEEC
Confidence            3579999999999999999999999999999999999999999987  57899999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhC--CCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCC
Q 027976           88 RSNIVGLPTSLLLQRH--HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCE  165 (216)
Q Consensus        88 ~gg~vg~~~a~~L~~~--ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~  165 (216)
                      +|++||+|++++|+++  |++||+|||+++++.+.+++|||||+|+|+|++++++|+++|++|||+++++.+        
T Consensus       166 ~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~r~~--------  237 (281)
T 2c2x_A          166 RGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTD--------  237 (281)
T ss_dssp             CCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHHHHHTTCSEEEECSCCTTCBCGGGSCTTCEEEECCEEEET--------
T ss_pred             CCcHHHHHHHHHHhcCCCCCEEEEEECchhHHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEccCCCCC--------
Confidence            9999999999999999  899999999999999999999999999999999999999999999999999875        


Q ss_pred             CCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHH
Q 027976          166 YGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR  211 (216)
Q Consensus       166 ~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~  211 (216)
                       .+ ++|||| ++++++++++|||||||||||++|||+|+++++++
T Consensus       238 -~g-lvGDVd-~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~aa~~  280 (281)
T 2c2x_A          238 -DG-LVGDVH-PDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER  280 (281)
T ss_dssp             -TE-EEESBC-GGGGGTCSEEECSSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             -CC-ccCccc-cchhhheeeecCCCCCccHHHHHHHHHHHHHHHHh
Confidence             14 999999 99999999999999999999999999999999985

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=100.00  E-value=1.2e-49  Score=352.04  Aligned_cols=184  Identities=28%  Similarity=0.389  Sum_probs=167.3

Q ss_pred             ccCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCC-------CCccCCCcHHHHHHHHHH-------
Q 027976            8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGR-------EPLFIPCTPKGCIELLIR-------   73 (216)
Q Consensus         8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~-------~~~~~p~Ta~g~~~~L~~-------   73 (216)
                      +-.+|||+||+|||+|+++++++++|+|+|||||||+.|.|+|+.|..       .++|+||||+|++++|++       
T Consensus        89 d~~v~GIlvqlPlp~~~~~~~i~~~I~p~KDVDG~~~~n~g~l~~~~~~l~~~~~~~~~~PcTp~a~v~ll~~~~~~~~~  168 (320)
T 1edz_A           89 DDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNL  168 (320)
T ss_dssp             CTTCCEEEECSCSSSSHHHHHHTTTSCTTTBTTCCSHHHHHHHHTTCCBSSSSSCSBCCCCHHHHHHHHHHHHTTCSCTT
T ss_pred             CCCCCEEEEeCCCCCCCCHHHHHhccCcccccCcCChhhhHHHhcCCccccccccCCCcCCCcHHHHHHHHHhhcccccc
Confidence            357999999999999999999999999999999999999999987621       258999999999999999       


Q ss_pred             --hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-----------------------C--CCHHhhccCCCE
Q 027976           74 --SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-----------------------T--KNPEQITSEADI  126 (216)
Q Consensus        74 --~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-----------------------t--~~l~~~~~~ADI  126 (216)
                        ++++++||+++|||+|++||+++|++|++.|++|++|+|+                       +  .++.+++++|||
T Consensus       169 ~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADI  248 (320)
T 1edz_A          169 LPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDV  248 (320)
T ss_dssp             SCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSE
T ss_pred             cccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCE
Confidence              7889999999999999999999999999999999999664                       2  578899999999


Q ss_pred             EEEecCCCCc-ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHH
Q 027976          127 VIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNT  205 (216)
Q Consensus       127 VIsatg~p~~-i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~  205 (216)
                      ||+|||+|++ |+.+|+++|++|||++++++                 +| +++.++++++||+   |||||++|||+|+
T Consensus       249 VIsAtg~p~~vI~~e~vk~GavVIDVgi~rD-----------------~d-~~v~~~a~~itPv---VGpmT~a~Ll~n~  307 (320)
T 1edz_A          249 VITGVPSENYKFPTEYIKEGAVCINFACTKN-----------------FS-DDVKEKASLYVPM---TGKVTIAMLLRNM  307 (320)
T ss_dssp             EEECCCCTTCCBCTTTSCTTEEEEECSSSCC-----------------BC-GGGGTTEEEEESC---CHHHHHHHHHHHH
T ss_pred             EEECCCCCcceeCHHHcCCCeEEEEcCCCcc-----------------cc-hhHHhhCCeeCCC---ccHHHHHHHHHHH
Confidence            9999999998 99999999999999998752                 22 4677889999987   9999999999999


Q ss_pred             HHHHHHH
Q 027976          206 LDSAKRA  212 (216)
Q Consensus       206 ~~a~~~~  212 (216)
                      ++++++.
T Consensus       308 ~~a~~~~  314 (320)
T 1edz_A          308 LRLVRNV  314 (320)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999864

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=99.97  E-value=4.6e-31  Score=229.98  Aligned_cols=180  Identities=18%  Similarity=0.171  Sum_probs=152.0

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccCcc-c-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFHPL-N-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~~~-n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      +++++++.++.|+|||+|+|  .+..++++.++| ++.+++++.+ + .|++. |+++|+      .|+++.|+++++++
T Consensus        50 ~v~~l~~~~~~G~nVTiP~K--~~v~~~ld~ls~~A~~iGAVNTv~~~~g~l~-G~NTD~------~G~~~~L~~~~~~~  120 (282)
T 3fbt_A           50 SVDTFKIIKCGGLNVTIPYK--VEVMKELYEISEKARKIGAVNTLKFSREGIS-GFNTDY------IGFGKMLSKFRVEI  120 (282)
T ss_dssp             HHHHHHHTTCCEEEECTTCT--TGGGGGCSEECHHHHHHTCCCEEEECSSCEE-EECCHH------HHHHHHHHHTTCCC
T ss_pred             HHHHHhcCCCCEEEEcCCCH--HHHHHHHHhcCHHHHHcCCcceEEeeCCEEE-eeCCcH------HHHHHHHHHcCCCc
Confidence            36778888999999999999  667899999999 7999999654 3 46665 766666      99999999999999


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCCC---------------HHhhccCCCEEEEecCC---CC----
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN---------------PEQITSEADIVIAAAGV---AN----  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~~---------------l~~~~~~ADIVIsatg~---p~----  135 (216)
                      +||+++|+|+||+ |++++..|.+.|+ +|++++|+.+.               +.+ + ++|+|||+|+.   |+    
T Consensus       121 ~~k~vlvlGaGGa-araia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~  197 (282)
T 3fbt_A          121 KNNICVVLGSGGA-ARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGES  197 (282)
T ss_dssp             TTSEEEEECSSTT-HHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCC
T ss_pred             cCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccC
Confidence            9999999999998 9999999999998 89999997421               112 4 89999999975   32    


Q ss_pred             cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          136 LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       136 ~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      +++.++++++.+|+|+.|+|.+          |+|+     +.+ +.+|+.  +.+|.+     ||++|++.+||+|+|+
T Consensus       198 pi~~~~l~~~~~v~DlvY~P~~----------T~ll-----~~A-~~~G~~--~~~Gl~-----MLv~Qa~~~f~lwtg~  254 (282)
T 3fbt_A          198 PVDKEVVAKFSSAVDLIYNPVE----------TLFL-----KYA-RESGVK--AVNGLY-----MLVSQAAASEEIWNDI  254 (282)
T ss_dssp             SSCHHHHTTCSEEEESCCSSSS----------CHHH-----HHH-HHTTCE--EECSHH-----HHHHHHHHHHHHHHTC
T ss_pred             CCCHHHcCCCCEEEEEeeCCCC----------CHHH-----HHH-HHCcCe--EeCcHH-----HHHHHHHHHHHHHcCC
Confidence            3677889999999999999987          6888     555 778985  478988     9999999999999996


Q ss_pred             C
Q 027976          216 T  216 (216)
Q Consensus       216 ~  216 (216)
                      +
T Consensus       255 ~  255 (282)
T 3fbt_A          255 S  255 (282)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=99.97  E-value=2e-30  Score=229.13  Aligned_cols=182  Identities=22%  Similarity=0.228  Sum_probs=153.0

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccCc-cc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFHP-LN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~~-~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      +++.+|.+++.|++||+|+|  .+..++++.++| ++.+++++. ++ .|++. |+++|+      .|+++.|+++++++
T Consensus        82 ~~~~l~~~~~~G~nVTiP~K--~~v~~~lD~ls~~A~~iGAVNTi~~~~g~l~-G~NTD~------~Gf~~~L~~~~~~l  152 (315)
T 3tnl_A           82 VVQGFRAMNLRGWNVSMPNK--TNIHKYLDKLSPAAELVGAVNTVVNDDGVLT-GHITDG------TGYMRALKEAGHDI  152 (315)
T ss_dssp             HHHHHHHTTCCEEEECTTST--TTGGGGCSEECHHHHHHTCCSEEEEETTEEE-EECCHH------HHHHHHHHHTTCCC
T ss_pred             HHHHHhcCCCCEEEEcCCCh--HHHHHHHHhcCHHHHHhCccceEEecCCEEE-EeCCCH------HHHHHHHHHcCCCc
Confidence            46788889999999999999  666899999999 799999954 44 46665 766665      99999999999999


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC-----------------------------CHHhhccCCCEEE
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----------------------------NPEQITSEADIVI  128 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-----------------------------~l~~~~~~ADIVI  128 (216)
                      +||+++|+|+||+ |++++..|++.|+ +|++++|+.+                             ++.+.++++|+||
T Consensus       153 ~gk~~lVlGaGG~-g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiII  231 (315)
T 3tnl_A          153 IGKKMTICGAGGA-ATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFT  231 (315)
T ss_dssp             TTSEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEE
T ss_pred             cCCEEEEECCChH-HHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEE
Confidence            9999999999997 9999999999998 8999999821                             1234466899999


Q ss_pred             EecCCC---C----cc-cCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHH
Q 027976          129 AAAGVA---N----LV-RGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAM  200 (216)
Q Consensus       129 satg~p---~----~i-~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~am  200 (216)
                      |+|+..   .    ++ +.++++++.+|+|+.|+|.+          |+|+     +.+ +.+|+.  +.+|++     |
T Consensus       232 NaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~~----------T~ll-----~~A-~~~G~~--~~~Gl~-----M  288 (315)
T 3tnl_A          232 NATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTK----------TRLL-----EIA-EEQGCQ--TLNGLG-----M  288 (315)
T ss_dssp             ECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSSS----------CHHH-----HHH-HHTTCE--EECSHH-----H
T ss_pred             ECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCCC----------CHHH-----HHH-HHCCCe--EeCcHH-----H
Confidence            999853   2    35 56788999999999999987          6888     555 778994  478988     9


Q ss_pred             HHHHHHHHHHHHhCCC
Q 027976          201 LLSNTLDSAKRAYGFT  216 (216)
Q Consensus       201 Ll~n~~~a~~~~~~~~  216 (216)
                      |++|++.+||+|+|+.
T Consensus       289 Lv~Qa~~af~lwtG~~  304 (315)
T 3tnl_A          289 MLWQGAKAFEIWTHKE  304 (315)
T ss_dssp             HHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999999974

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=99.96  E-value=6.2e-30  Score=220.65  Aligned_cols=182  Identities=15%  Similarity=0.077  Sum_probs=149.5

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccCcc---ccccccccCCCCccCCCcHHHHHHHHHHhCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFHPL---NIGNLAMRGREPLFIPCTPKGCIELLIRSGVE   77 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~~~---n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~   77 (216)
                      .++++++.+++|+|||+|||+++  .++++.++| +|++++++.+   +.|++. |++      |++.|+++.|++++++
T Consensus        46 ~i~~l~~~~~~G~nVT~P~K~~~--~~~ld~~~~~A~~igavNti~~~~~g~l~-G~n------tD~~G~~~~L~~~~~~  116 (271)
T 1nyt_A           46 TLNAFFSAGGKGANVTVPFKEEA--FARADELTERAALAGAVNTLMRLEDGRLL-GDN------TDGVGLLSDLERLSFI  116 (271)
T ss_dssp             HHHHHHHTTCCEEEECTTCHHHH--HHHCSEECHHHHHHTCCSEEEECTTSCEE-EEC------CHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCCCeEEEccCCHHHH--HHHHhhcCHHHHHhCCceEEEEcCCCeEE-EeC------CCHHHHHHHHHhcCcC
Confidence            36778888999999999999444  788889999 5999999765   567775 644      4569999999999999


Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---HHh--------------hc--cCCCEEEEecCCCCc--
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---PEQ--------------IT--SEADIVIAAAGVANL--  136 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---l~~--------------~~--~~ADIVIsatg~p~~--  136 (216)
                      ++||+++|+|+|++ |++++..|++.|++|++++|+.+.   +.+              .+  .++|+||++||.+..  
T Consensus       117 l~~k~vlViGaGg~-g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~~  195 (271)
T 1nyt_A          117 RPGLRILLIGAGGA-SRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGD  195 (271)
T ss_dssp             CTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTC
T ss_pred             cCCCEEEEECCcHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCCC
Confidence            99999999999986 999999999999999999987421   111              12  379999999997654  


Q ss_pred             ---ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          137 ---VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       137 ---i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                         ++.++++++.+|+|+.|+|.+          +++.      ..++++|+. |+.+|++     ||++|++.+|++|+
T Consensus       196 ~~~i~~~~l~~~~~v~D~~y~p~~----------t~~~------~~a~~~G~~-~~~~G~~-----mLv~Q~~~af~~w~  253 (271)
T 1nyt_A          196 IPAIPSSLIHPGIYCYDMFYQKGK----------TPFL------AWCEQRGSK-RNADGLG-----MLVAQAAHAFLLWH  253 (271)
T ss_dssp             CCCCCGGGCCTTCEEEESCCCSSC----------CHHH------HHHHHTTCC-EEECTHH-----HHHHHHHHHHHHHH
T ss_pred             CCCCCHHHcCCCCEEEEeccCCcC----------CHHH------HHHHHcCCC-eecCCHH-----HHHHHHHHHHHHHh
Confidence               677889999999999999865          4555      344778883 2678877     99999999999999


Q ss_pred             CC
Q 027976          214 GF  215 (216)
Q Consensus       214 ~~  215 (216)
                      |.
T Consensus       254 g~  255 (271)
T 1nyt_A          254 GV  255 (271)
T ss_dssp             SS
T ss_pred             CC
Confidence            86

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=99.96  E-value=8.6e-30  Score=221.93  Aligned_cols=182  Identities=18%  Similarity=0.158  Sum_probs=152.8

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc--cccccccCCCCccCCCcHHHHHHHHHHhCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN--IGNLAMRGREPLFIPCTPKGCIELLIRSGVE   77 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n--~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~   77 (216)
                      +++++|.+++.|+||++|||  .+..++++.++| ++.+.+++ .++  .|++. |+|+|+      .|+++.|++.+.+
T Consensus        54 ~~~~~~~~~~~G~nVTiP~K--~~v~~~lD~l~~~A~~iGAVNTv~~~~~g~l~-G~NTD~------~G~~~~l~~~~~~  124 (283)
T 3jyo_A           54 LLDAALYLGFNGLNITHPYK--QAVLPLLDEVSEQATQLGAVNTVVIDATGHTT-GHNTDV------SGFGRGMEEGLPN  124 (283)
T ss_dssp             HHHHHHHTTCCEEEECTTCT--TTTGGGSSEECHHHHHHTCCCEEEECTTSCEE-EECHHH------HHHHHHHHHHCTT
T ss_pred             HHHHHhhCCCCEEEECcccH--HHHHHHhhhCCHHHHHhCcceEEEECCCCeEE-EecCCH------HHHHHHHHHhCcC
Confidence            35678889999999999999  555889999999 88888884 444  35664 766666      9999999999999


Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC------------------------CHHhhccCCCEEEEecC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK------------------------NPEQITSEADIVIAAAG  132 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~------------------------~l~~~~~~ADIVIsatg  132 (216)
                      ++||+++|+|+||+ |++++..|++.|+ +|++++|+.+                        ++.+.++++|+|||+|+
T Consensus       125 l~~k~vlVlGaGG~-g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          125 AKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             CCCSEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred             cCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence            99999999999997 9999999999998 6999988721                        34456678999999998


Q ss_pred             CCC------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHH
Q 027976          133 VAN------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL  206 (216)
Q Consensus       133 ~p~------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~  206 (216)
                      ..+      +++.++++++.+|+|+.|+|.+          |+|+     +.+ +++|+  ++.+|.+     ||++|++
T Consensus       204 ~Gm~~~~~~pi~~~~l~~~~~v~DlvY~P~~----------T~ll-----~~A-~~~G~--~~~~Gl~-----MLv~Qa~  260 (283)
T 3jyo_A          204 MGMPAHPGTAFDVSCLTKDHWVGDVVYMPIE----------TELL-----KAA-RALGC--ETLDGTR-----MAIHQAV  260 (283)
T ss_dssp             TTSTTSCSCSSCGGGCCTTCEEEECCCSSSS----------CHHH-----HHH-HHHTC--CEECTHH-----HHHHHHH
T ss_pred             CCCCCCCCCCCCHHHhCCCCEEEEecCCCCC----------CHHH-----HHH-HHCcC--eEeCcHH-----HHHHHHH
Confidence            532      3677889999999999999977          6888     555 77898  4578988     9999999


Q ss_pred             HHHHHHhCCC
Q 027976          207 DSAKRAYGFT  216 (216)
Q Consensus       207 ~a~~~~~~~~  216 (216)
                      .+|++|+|+.
T Consensus       261 ~~f~lwtg~~  270 (283)
T 3jyo_A          261 DAFRLFTGLE  270 (283)
T ss_dssp             HHHHHHHSCC
T ss_pred             HHHHHHcCCC
Confidence            9999999974

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=99.96  E-value=8.5e-30  Score=221.44  Aligned_cols=182  Identities=16%  Similarity=0.121  Sum_probs=151.1

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      +++.++.+++.|+||++|+|  .+..++++.++| ++.+.+++ .++ .|+++ |+|+|+      .|+++.|++.+.++
T Consensus        45 ~~~~~~~~~~~G~nVTiP~K--~~v~~~~d~l~~~A~~iGAVNTv~~~~g~l~-G~NTD~------~G~~~~L~~~~~~l  115 (277)
T 3don_A           45 IKKIISEKSIDGFNVTIPHK--ERIIPYLDDINEQAKSVGAVNTVLVKDGKWI-GYNTDG------IGYVNGLKQIYEGI  115 (277)
T ss_dssp             HHHHHHHTTCSEEEECTTCT--TTTGGGCSEECHHHHHHTCCCEEEEETTEEE-EECCHH------HHHHHHHHHHSTTG
T ss_pred             HHHHHhhCCCCEEEECcCCH--HHHHHHhhhCCHHHHHhCceeEEEecCCEEE-EECChH------HHHHHHHHHhCCCc
Confidence            46778889999999999999  555889999999 88888884 444 56665 766666      99999999999999


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC---------------CHHhhccCCCEEEEecCCC---C---c
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------NPEQITSEADIVIAAAGVA---N---L  136 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---------------~l~~~~~~ADIVIsatg~p---~---~  136 (216)
                      +||+++|+|+|++ |++++..|++.|+ +|++++|+.+               ++.+.++++|+||++|+..   .   .
T Consensus       116 ~~k~vlvlGaGg~-g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~  194 (277)
T 3don_A          116 EDAYILILGAGGA-SKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSV  194 (277)
T ss_dssp             GGCCEEEECCSHH-HHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCS
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCC
Confidence            9999999999997 9999999999998 7999998742               2345578899999999863   2   2


Q ss_pred             ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 027976          137 VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  216 (216)
Q Consensus       137 i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~~  216 (216)
                      ++.++++++.+|+|+.|+|.+          |+|+     +.+ +++|+  ++.+|.+     ||++|++.+|++|+|++
T Consensus       195 l~~~~l~~~~~V~D~vY~P~~----------T~ll-----~~A-~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg~~  251 (277)
T 3don_A          195 ISLNRLASHTLVSDIVYNPYK----------TPIL-----IEA-EQRGN--PIYNGLD-----MFVHQGAESFKIWTNLE  251 (277)
T ss_dssp             SCCTTCCSSCEEEESCCSSSS----------CHHH-----HHH-HHTTC--CEECTHH-----HHHHHHHHHHHHHHSSC
T ss_pred             CCHHHcCCCCEEEEecCCCCC----------CHHH-----HHH-HHCcC--EEeCCHH-----HHHHHHHHHHHHHcCCC
Confidence            567889999999999999876          6777     454 77888  4578988     99999999999999964

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=99.96  E-value=2e-29  Score=222.48  Aligned_cols=182  Identities=19%  Similarity=0.195  Sum_probs=150.1

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      +++++|.+++.|+||++|+|  .+..++++.++| ++.+.+++ .++ .|++. |+|+|+      .|+++.|++.++++
T Consensus        76 ~~~~~~~~~~~G~nVTiP~K--~~v~~~lD~ls~~A~~iGAVNTi~~~~g~l~-G~NTD~------~Gf~~~L~~~~~~l  146 (312)
T 3t4e_A           76 AIEGLKALKMRGTGVSMPNK--QLACEYVDELTPAAKLVGAINTIVNDDGYLR-GYNTDG------TGHIRAIKESGFDM  146 (312)
T ss_dssp             HHHHHHHTTCCEEEECTTSH--HHHGGGCSEECHHHHHHTCCSEEEEETTEEE-EECHHH------HHHHHHHHHTTCCC
T ss_pred             HHHHHhhCCCCEEEECchhH--HHHHHHhhhcCHHHHHhCceeEEEecCCEEE-EeCCcH------HHHHHHHHhcCCCc
Confidence            46788899999999999999  555677778888 88888884 444 45665 766776      99999999999999


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC--------------------------CH---HhhccCCCEEE
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK--------------------------NP---EQITSEADIVI  128 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~--------------------------~l---~~~~~~ADIVI  128 (216)
                      +||+++|+|+||+ |++++..|++.|+ +|+|++|+.+                          ++   .+.+.++|+||
T Consensus       147 ~gk~~lVlGAGGa-araia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiII  225 (312)
T 3t4e_A          147 RGKTMVLLGAGGA-ATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILT  225 (312)
T ss_dssp             TTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEE
T ss_pred             CCCEEEEECcCHH-HHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEE
Confidence            9999999999998 9999999999998 7999999821                          11   23456799999


Q ss_pred             EecCCCC------cc--cCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHH
Q 027976          129 AAAGVAN------LV--RGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAM  200 (216)
Q Consensus       129 satg~p~------~i--~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~am  200 (216)
                      |+|+..+      ++  +.++++++.+|+|+.|+|.+          |+|+     +.+ +++|+.  +.+|++     |
T Consensus       226 NaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~~--~~~Gl~-----M  282 (312)
T 3t4e_A          226 NGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHM----------TKLL-----QQA-QQAGCK--TIDGYG-----M  282 (312)
T ss_dssp             ECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSS----------CHHH-----HHH-HHTTCE--EECHHH-----H
T ss_pred             ECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCC----------CHHH-----HHH-HHCCCe--EECcHH-----H
Confidence            9998643      22  55788999999999999987          6888     555 778984  478988     9


Q ss_pred             HHHHHHHHHHHHhCCC
Q 027976          201 LLSNTLDSAKRAYGFT  216 (216)
Q Consensus       201 Ll~n~~~a~~~~~~~~  216 (216)
                      |++|++.+||+|+|+.
T Consensus       283 Lv~Qa~~af~lwtg~~  298 (312)
T 3t4e_A          283 LLWQGAEQFELWTGKA  298 (312)
T ss_dssp             HHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999999963

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=99.96  E-value=2.6e-29  Score=217.84  Aligned_cols=183  Identities=14%  Similarity=0.051  Sum_probs=149.0

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHH-HHHhCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIEL-LIRSGVE   77 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~-L~~~~~~   77 (216)
                      .+++++.+++.|+||++|||  .+..++++.++| ++.+.+++ ..+ .|++. |+|+|+      .|+++. |++.+++
T Consensus        47 ~~~~~~~~~~~G~nVTiP~K--~~v~~~~d~l~~~A~~iGAvNTv~~~~g~l~-G~NTD~------~G~~~~lL~~~~~~  117 (272)
T 3pwz_A           47 QVLQFRSEGGKGMNITAPFK--LRAFELADRRSERAQLARAANALKFEDGRIV-AENFDG------IGLLRDIEENLGEP  117 (272)
T ss_dssp             HHHHHHHTTCCEEEECTTCH--HHHHHHCSEECHHHHHHTCCSEEEEETTEEE-EECCHH------HHHHHHHHTTSCCC
T ss_pred             HHHHHhhCCCCEEEECchhH--HHHHHHHhhCCHHHHHhCccceEEccCCeEE-EecCCH------HHHHHHHHHHcCCC
Confidence            36778888999999999999  556778888888 88888874 344 45564 766666      999997 9888999


Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCCC---HHh-------------hc--cCCCEEEEecCCCC---
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN---PEQ-------------IT--SEADIVIAAAGVAN---  135 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~~---l~~-------------~~--~~ADIVIsatg~p~---  135 (216)
                      ++||+++|+|+|++ |++++..|++.|+ +|++++|+.+.   +.+             .+  .++|+|||+|+.++   
T Consensus       118 l~~k~~lvlGaGg~-~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~  196 (272)
T 3pwz_A          118 LRNRRVLLLGAGGA-VRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTAD  196 (272)
T ss_dssp             CTTSEEEEECCSHH-HHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTC
T ss_pred             ccCCEEEEECccHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCC
Confidence            99999999999997 9999999999996 89999997421   111             11  67999999998642   


Q ss_pred             --cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          136 --LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       136 --~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                        +++.++++++.+|+|+.|+|.+          |+|+     +.+ +++|+.. +.+|.+     ||++|++.+|++|+
T Consensus       197 ~~~i~~~~l~~~~~V~DlvY~P~~----------T~ll-----~~A-~~~G~~~-~~~Gl~-----ML~~Qa~~~f~lwt  254 (272)
T 3pwz_A          197 LPPLPADVLGEAALAYELAYGKGL----------TPFL-----RLA-REQGQAR-LADGVG-----MLVEQAAEAFAWWR  254 (272)
T ss_dssp             CCCCCGGGGTTCSEEEESSCSCCS----------CHHH-----HHH-HHHSCCE-EECTHH-----HHHHHHHHHHHHHH
T ss_pred             CCCCCHHHhCcCCEEEEeecCCCC----------CHHH-----HHH-HHCCCCE-EECCHH-----HHHHHHHHHHHHHh
Confidence              3677899999999999999976          6888     555 7788841 467988     99999999999999


Q ss_pred             CCC
Q 027976          214 GFT  216 (216)
Q Consensus       214 ~~~  216 (216)
                      |++
T Consensus       255 g~~  257 (272)
T 3pwz_A          255 GVR  257 (272)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            964

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=99.96  E-value=7.2e-29  Score=217.12  Aligned_cols=181  Identities=20%  Similarity=0.266  Sum_probs=151.6

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccCcc--ccccccccCCCCccCCCcHHHHHHHHHHhC-CC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSG-VE   77 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~~~--n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~-~~   77 (216)
                      .++.++..+++|++||+|+|+++  .++++.++| +|++++++.+  +.|++. |+++++      .|+++.|++++ ++
T Consensus        68 ~v~~l~~~~~~G~nVTiP~K~~i--~~~ld~~~~~A~~iGavNti~~~~g~l~-g~nTd~------~G~~~~l~~~~~~~  138 (297)
T 2egg_A           68 AIAGVRALGIAGVNVTIPHKLAV--IPFLDEVDEHARRIGAVNTIINNDGRLV-GYNTDG------LGYVQALEEEMNIT  138 (297)
T ss_dssp             HHHHHHHHTCCEEEECTTCTTTT--GGGCSEECHHHHHHTCCCEEEEETTEEE-EECCHH------HHHHHHHHHHTTCC
T ss_pred             HHHHHhhCCCCeEEECCcCHHHH--HHHHHHHhHHHHHhCCCCeEECcCCeEe-eccCCH------HHHHHHHHHhCCCC
Confidence            36677888999999999999766  889999999 6999999765  578886 666666      99999999988 89


Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC--------------------CHHhhccCCCEEEEecCCCC-
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK--------------------NPEQITSEADIVIAAAGVAN-  135 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~--------------------~l~~~~~~ADIVIsatg~p~-  135 (216)
                      +++++++|+|+|++ |++++..|++.|+ +|++++|+.+                    ++.+.++++|+||++||.+. 
T Consensus       139 l~~~~vlVlGaGg~-g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          139 LDGKRILVIGAGGG-ARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CTTCEEEEECCSHH-HHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred             CCCCEEEEECcHHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence            99999999999996 9999999999998 8999998731                    23455678999999999654 


Q ss_pred             ------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976          136 ------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       136 ------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                            +++.++++++.+|+|++|+|.+          |+|+     +.+ +++|+.+  .+|++     ||++|++.+|
T Consensus       218 ~~~~~~~i~~~~l~~~~~v~D~~y~P~~----------T~ll-----~~A-~~~G~~~--v~Gl~-----MLv~Qa~~af  274 (297)
T 2egg_A          218 PRVEVQPLSLERLRPGVIVSDIIYNPLE----------TKWL-----KEA-KARGARV--QNGVG-----MLVYQGALAF  274 (297)
T ss_dssp             SCCSCCSSCCTTCCTTCEEEECCCSSSS----------CHHH-----HHH-HHTTCEE--ECSHH-----HHHHHHHHHH
T ss_pred             CCCCCCCCCHHHcCCCCEEEEcCCCCCC----------CHHH-----HHH-HHCcCEE--ECCHH-----HHHHHHHHHH
Confidence                  2566789999999999999876          5666     444 6778843  55777     9999999999


Q ss_pred             HHHhCC
Q 027976          210 KRAYGF  215 (216)
Q Consensus       210 ~~~~~~  215 (216)
                      ++|+|.
T Consensus       275 ~~w~g~  280 (297)
T 2egg_A          275 EKWTGQ  280 (297)
T ss_dssp             HHHHSC
T ss_pred             HHHhCC
Confidence            999986

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=99.95  E-value=2.2e-29  Score=217.38  Aligned_cols=183  Identities=15%  Similarity=0.084  Sum_probs=147.7

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccCcc---ccccccccCCCCccCCCcHHHHHHHHHHhCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFHPL---NIGNLAMRGREPLFIPCTPKGCIELLIRSGVE   77 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~~~---n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~   77 (216)
                      .++++++.+++|+|||+|||++  ..++++.++| +|++++++.+   +.|+++ |+++|+      .|+++.|++++.+
T Consensus        46 ~i~~~~~~~~~G~nVT~P~K~~--v~~~ld~~~~~A~~igavNti~~~~~g~l~-g~NTD~------~G~~~~L~~~~~~  116 (272)
T 1p77_A           46 QLLAFFEEGAKGCNITSPFKER--AYQLADEYSQRAKLAEACNTLKKLDDGKLY-ADNTDG------IGLVTDLQRLNWL  116 (272)
T ss_dssp             HHHHHHHTTCCEEEECTTCHHH--HHHHCSEECHHHHHHTCCSEEEECTTSCEE-EECCHH------HHHHHHHHHTTCC
T ss_pred             HHHHHHhCCCCEEEECcCCHHH--HHHHHhhcCHHHHHhCCceEEEEccCCEEE-EecCCH------HHHHHHHHHhCCC
Confidence            3677888899999999999944  4889999999 6999999766   578885 656655      9999999999999


Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---CHH--------------hhc-c-CCCEEEEecCCCCc--
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---NPE--------------QIT-S-EADIVIAAAGVANL--  136 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---~l~--------------~~~-~-~ADIVIsatg~p~~--  136 (216)
                      +++|+++|+|+|++ |++++..|++.|++|++++|+.+   .+.              +.+ + ++|+||++||.+..  
T Consensus       117 ~~~~~vlvlGaGg~-g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~~  195 (272)
T 1p77_A          117 RPNQHVLILGAGGA-TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGG  195 (272)
T ss_dssp             CTTCEEEEECCSHH-HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-----
T ss_pred             cCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCCC
Confidence            99999999999986 99999999999999999999742   111              123 3 79999999997653  


Q ss_pred             ---ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          137 ---VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       137 ---i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                         ++.++++++.+|+|+.|+|.+         .+++.      ..++++|+.++++ |.+     ||++|++.+|++|+
T Consensus       196 ~~~i~~~~l~~~~~v~D~~y~p~~---------~t~ll------~~a~~~G~~~~v~-G~~-----mLv~Qa~~af~~w~  254 (272)
T 1p77_A          196 TASVDAEILKLGSAFYDMQYAKGT---------DTPFI------ALCKSLGLTNVSD-GFG-----MLVAQAAHSFHLWR  254 (272)
T ss_dssp             --CCCHHHHHHCSCEEESCCCTTS---------CCHHH------HHHHHTTCCCEEC-SHH-----HHHHHHHHHHHHHH
T ss_pred             CCCCCHHHcCCCCEEEEeeCCCCc---------CCHHH------HHHHHcCCCEeeC-CHH-----HHHHHHHHHHHHHh
Confidence               556678889999999998853         13555      3447788864455 767     99999999999999


Q ss_pred             CC
Q 027976          214 GF  215 (216)
Q Consensus       214 ~~  215 (216)
                      |.
T Consensus       255 g~  256 (272)
T 1p77_A          255 GV  256 (272)
T ss_dssp             SC
T ss_pred             CC
Confidence            86

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=99.95  E-value=8.3e-29  Score=215.55  Aligned_cols=183  Identities=13%  Similarity=0.101  Sum_probs=149.5

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-cc-c-cccccccCCCCccCCCcHHHHHHHHHHhCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PL-N-IGNLAMRGREPLFIPCTPKGCIELLIRSGVE   77 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~-n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~   77 (216)
                      .+++++.+++.|+||++|||  .+..++++.++| ++.+.+++ .+ + .|++. |+++|+      .|+++.|++.+++
T Consensus        53 ~~~~~~~~~~~G~nVTiP~K--~~v~~~ld~l~~~A~~iGAVNTv~~~~~g~l~-G~NTD~------~G~~~~L~~~~~~  123 (281)
T 3o8q_A           53 AAKHFFAQGGRGCNVTVPFK--EEAYRFADRLTERARLAGAVNTLKKLDDGEIL-GDNTDG------EGLVQDLLAQQVL  123 (281)
T ss_dssp             HHHHHHHTTCCEEEECTTSH--HHHHHHCSEECHHHHHHTCCSEEEECTTSCEE-EECCHH------HHHHHHHHHTTCC
T ss_pred             HHHHHHhCCCCEEEECCccH--HHHHHHHhhcCHHHHhhCeeeEEEEcCCCcEE-EEecHH------HHHHHHHHHhCCC
Confidence            36778888999999999999  555778888888 88888884 33 2 46665 766666      9999999999999


Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCCC---H---------------HhhccCCCEEEEecCCCC---
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN---P---------------EQITSEADIVIAAAGVAN---  135 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~~---l---------------~~~~~~ADIVIsatg~p~---  135 (216)
                      ++||+++|+|+|++ |++++..|++.|+ +|++++|+.+.   +               .+..+++|+|||+|+.++   
T Consensus       124 l~~k~vlvlGaGg~-g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~  202 (281)
T 3o8q_A          124 LKGATILLIGAGGA-ARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE  202 (281)
T ss_dssp             CTTCEEEEECCSHH-HHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred             ccCCEEEEECchHH-HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence            99999999999997 9999999999996 89999997421   1               112267999999998753   


Q ss_pred             --cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          136 --LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       136 --~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                        +++.++++++.+|+|+.|+|.+          |+|+     +.+ ++.|+.. +.+|.+     ||++|++.+|++|+
T Consensus       203 ~~~l~~~~l~~~~~V~DlvY~P~~----------T~ll-----~~A-~~~G~~~-~~~Gl~-----Mlv~Qa~~~f~lwt  260 (281)
T 3o8q_A          203 LPAIDPVIFSSRSVCYDMMYGKGY----------TVFN-----QWA-RQHGCAQ-AIDGLG-----MLVGQAAESFMLWR  260 (281)
T ss_dssp             -CSCCGGGEEEEEEEEESCCCSSC----------CHHH-----HHH-HHTTCSE-EECTHH-----HHHHHHHHHHHHHH
T ss_pred             CCCCCHHHhCcCCEEEEecCCCcc----------CHHH-----HHH-HHCCCCE-EECcHH-----HHHHHHHHHHHHHh
Confidence              3677889999999999999976          6787     555 7788841 467988     99999999999999


Q ss_pred             CCC
Q 027976          214 GFT  216 (216)
Q Consensus       214 ~~~  216 (216)
                      |+.
T Consensus       261 g~~  263 (281)
T 3o8q_A          261 GLR  263 (281)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            963

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=99.95  E-value=3e-28  Score=211.52  Aligned_cols=180  Identities=18%  Similarity=0.212  Sum_probs=147.4

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccCcc--ccccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~~~--n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      .++.++..+++|++||+|||+++  .++++.+++ ++++++++.+  +.|++. |++      +|+.|++++|+++++++
T Consensus        56 ~i~~l~~~~~~G~nVtiP~k~~i--~~~~d~~~~~a~~igavnt~~~~~g~l~-g~n------Td~~G~~~~L~~~~~~l  126 (287)
T 1nvt_A           56 VIDGAKALGIVGFNVTIPHKIEI--MKYLDEIDKDAQLIGAVNTIKIEDGKAI-GYN------TDGIGARMALEEEIGRV  126 (287)
T ss_dssp             HHHHHHHHTCCEEEECTTSTTGG--GGGCSEECHHHHHHTCCCEEEEETTEEE-EEC------CHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhCCCCEEEEccCCHHHH--HHHHHhcCHHHHHhCceeeEEeeCCEEE-Eec------CCHHHHHHHHHHhCCCc
Confidence            36677777999999999999666  778888889 7999999655  367775 544      46699999999999999


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---H---------------------HhhccCCCEEEEecCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---P---------------------EQITSEADIVIAAAGVA  134 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---l---------------------~~~~~~ADIVIsatg~p  134 (216)
                      +||+++|+|+|++ |++++..|++.| +|++++|+.+.   +                     .+.+.++|+||+++|.+
T Consensus       127 ~~k~vlV~GaGgi-G~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~  204 (287)
T 1nvt_A          127 KDKNIVIYGAGGA-ARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG  204 (287)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred             CCCEEEEECchHH-HHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCC
Confidence            9999999999975 999999999999 99999987421   1                     23356789999999965


Q ss_pred             C-------cc-cCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHH
Q 027976          135 N-------LV-RGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL  206 (216)
Q Consensus       135 ~-------~i-~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~  206 (216)
                      .       ++ +.++++++.+|+|++|+|.+          ++|+     +. ++++|+.  +.+|++     ||++|++
T Consensus       205 ~~~~~~~~~~~~~~~l~~~~~v~Dv~y~p~~----------t~ll-----~~-a~~~G~~--~~~Gl~-----mL~~Qa~  261 (287)
T 1nvt_A          205 MYPNIDVEPIVKAEKLREDMVVMDLIYNPLE----------TVLL-----KE-AKKVNAK--TINGLG-----MLIYQGA  261 (287)
T ss_dssp             CTTCCSSCCSSCSTTCCSSSEEEECCCSSSS----------CHHH-----HH-HHTTTCE--EECTHH-----HHHHHHH
T ss_pred             CCCCCCCCCCCCHHHcCCCCEEEEeeeCCcc----------CHHH-----HH-HHHCCCE--EeCcHH-----HHHHHHH
Confidence            4       24 67889999999999999865          5676     34 4677884  467877     9999999


Q ss_pred             HHHHHHhCC
Q 027976          207 DSAKRAYGF  215 (216)
Q Consensus       207 ~a~~~~~~~  215 (216)
                      .+|++|+|.
T Consensus       262 ~af~~w~g~  270 (287)
T 1nvt_A          262 VAFKIWTGV  270 (287)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCC
Confidence            999999986

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=99.95  E-value=4.6e-28  Score=209.71  Aligned_cols=177  Identities=14%  Similarity=0.121  Sum_probs=143.1

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      +++.++.+++.|+||++|+|  .+..++++.++| ++.+.+++ .++ .|++. |+|+|+      .|+++.|++.+   
T Consensus        50 ~~~~~~~~~~~G~nVTiP~K--~~v~~~~d~l~~~A~~iGAVNTi~~~~g~l~-G~NTD~------~Gf~~~L~~~~---  117 (269)
T 3phh_A           50 IKSEFLHLGLSGANVTLPFK--ERAFQVCDKIKGIALECGAVNTLVLENDELV-GYNTDA------LGFYLSLKQKN---  117 (269)
T ss_dssp             HHHHHHHTTEEEEEECTTCH--HHHHHHSSEECGGGGGTTCCCEEEEETTEEE-EECCHH------HHHHHHCC------
T ss_pred             HHHHHhhCCCCEEEEccccH--HHHHHHHhhcCHHHHHhCceeEEEeeCCEEE-EecChH------HHHHHHHHHcC---
Confidence            46788889999999999999  666788888888 88888874 344 46665 766666      99999998754   


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhh------------ccCCCEEEEecCCCC----cccCC--
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQI------------TSEADIVIAAAGVAN----LVRGS--  140 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~------------~~~ADIVIsatg~p~----~i~~~--  140 (216)
                       +|+++|+|+|++ |++++..|++.|++|++++|+.+..++.            +.++|+|||+|+...    +++.+  
T Consensus       118 -~k~vlvlGaGGa-araia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l~~~DiVInaTp~Gm~~~~~l~~~~l  195 (269)
T 3phh_A          118 -YQNALILGAGGS-AKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVL  195 (269)
T ss_dssp             -CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCSSCCSEEEECCTTCCCCSCSSCHHHH
T ss_pred             -CCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHhccCCEEEEcccCCCCCCCCCChHHH
Confidence             999999999998 9999999999999999999986543322            247999999998643    35666  


Q ss_pred             --cccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 027976          141 --WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  216 (216)
Q Consensus       141 --~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~~  216 (216)
                        .++++.+|+|+.|+| +          |+|+     +.+ ++.|+  ++.+|.+     ||++|++.+|++|+|+.
T Consensus       196 ~~~l~~~~~v~D~vY~P-~----------T~ll-----~~A-~~~G~--~~~~Gl~-----MLv~Qa~~~f~lw~g~~  249 (269)
T 3phh_A          196 KGYFKEGKLAYDLAYGF-L----------TPFL-----SLA-KELKT--PFQDGKD-----MLIYQAALSFEKFSASQ  249 (269)
T ss_dssp             HHHHHHCSEEEESCCSS-C----------CHHH-----HHH-HHTTC--CEECSHH-----HHHHHHHHHHHHHTTTS
T ss_pred             HhhCCCCCEEEEeCCCC-c----------hHHH-----HHH-HHCcC--EEECCHH-----HHHHHHHHHHHHHhCCC
Confidence              678899999999999 8          6777     454 77888  4578988     99999999999999963

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=99.93  E-value=5.7e-27  Score=202.96  Aligned_cols=181  Identities=12%  Similarity=0.147  Sum_probs=145.8

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc-cccccccCCCCccCCCcHHHHHHHHHHhCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEI   78 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l   78 (216)
                      +++.++.+++.|++|++|+|+  +..++++.+++ ++.+.+++ .+| .|++. |+++|+      .|+.+.|++.+.+ 
T Consensus        48 ~~~~~~~~~~~G~nVTiP~K~--~i~~~~d~~~~~A~~iGAvNTi~~~~g~l~-g~NTD~------~G~~~~l~~~~~~-  117 (271)
T 1npy_A           48 AIKGVRALGIRGCAVSMPFKE--TCMPFLDEIHPSAQAIESVNTIVNDNGFLR-AYNTDY------IAIVKLIEKYHLN-  117 (271)
T ss_dssp             HHHHHHHHTCCEEEECTTCTT--TTGGGCSEECHHHHTTTCCCEEEEETTEEE-EECHHH------HHHHHHHHHTTCC-
T ss_pred             HHHHhccCCCCeEEECcCCHH--HHHHHHHHhhHHHHHhCCCCceECcCCEEE-eecCCH------HHHHHHHHHhCCC-
Confidence            467888889999999999994  44888999999 89998884 445 56665 666666      9999999988775 


Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCCC---HHh----------hccCCCEEEEecCCCCc--------
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN---PEQ----------ITSEADIVIAAAGVANL--------  136 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~~---l~~----------~~~~ADIVIsatg~p~~--------  136 (216)
                      .+++++|+|+|++ |++++..|...|+ +|+|++|+.+.   +.+          .+.++|+|||+|+.++.        
T Consensus       118 ~~~~vlvlGaGga-arav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~~DivInaTp~gm~~~~~~~~~  196 (271)
T 1npy_A          118 KNAKVIVHGSGGM-AKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDL  196 (271)
T ss_dssp             TTSCEEEECSSTT-HHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTTCCCSEEEECSSTTCTTSTTTTSC
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhhcccCCEEEECCCCCccCccccCCC
Confidence            7899999999998 9999999999997 69999997321   110          13579999999997542        


Q ss_pred             -ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          137 -VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       137 -i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                       ++.++++++.+|+|+.|+|.+          |+|+     +.+ ++.|+.+  .+|.+     ||++|++.+|++|+|.
T Consensus       197 ~~~~~~l~~~~~v~DlvY~P~~----------T~ll-----~~A-~~~G~~~--i~Gl~-----MLv~Qa~~~f~lw~g~  253 (271)
T 1npy_A          197 AFPKAFIDNASVAFDVVAMPVE----------TPFI-----RYA-QARGKQT--ISGAA-----VIVLQAVEQFELYTHQ  253 (271)
T ss_dssp             SSCHHHHHHCSEEEECCCSSSS----------CHHH-----HHH-HHTTCEE--ECHHH-----HHHHHHHHHHHHHHSC
T ss_pred             CCCHHHcCCCCEEEEeecCCCC----------CHHH-----HHH-HHCCCEE--ECCHH-----HHHHHHHHHHHHHhCC
Confidence             334567789999999999976          6777     454 7788854  78988     9999999999999996


Q ss_pred             C
Q 027976          216 T  216 (216)
Q Consensus       216 ~  216 (216)
                      .
T Consensus       254 ~  254 (271)
T 1npy_A          254 R  254 (271)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.92  E-value=2e-25  Score=192.73  Aligned_cols=178  Identities=18%  Similarity=0.208  Sum_probs=145.4

Q ss_pred             hhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccCcc--ccccccccCCCCccCCCcHHHHHHHHHHhCCCCC
Q 027976            3 VQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIM   79 (216)
Q Consensus         3 ~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~~~--n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~   79 (216)
                      ++.++..+++|++||+|+|+++  .++++.+++ +|++++++.+  +.|++. |+      ++++.|++..|++++++++
T Consensus        58 i~~l~~~~~~G~nvtiP~k~~i--~~~ld~l~~~A~~~gavnti~~~~g~~~-g~------nTd~~G~~~~l~~~~~~~~  128 (275)
T 2hk9_A           58 FEGFKALKVKGINVTVPFKEEI--IPLLDYVEDTAKEIGAVNTVKFENGKAY-GY------NTDWIGFLKSLKSLIPEVK  128 (275)
T ss_dssp             HHHHHHHTCCEEEECTTSTTTT--GGGCSEECHHHHHHTCCCEEEEETTEEE-EE------CCHHHHHHHHHHHHCTTGG
T ss_pred             HHHHHhCCCCEEEECccCHHHH--HHHHHHhhHHHHHhCCcceEEeeCCEEE-ee------cCCHHHHHHHHHHhCCCcC
Confidence            5677788999999999999665  788899999 6999999765  466664 53      4566999999999999999


Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------CHHhhccCCCEEEEecCCCC------ccc
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGVAN------LVR  138 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~~ADIVIsatg~p~------~i~  138 (216)
                      |++++|||+|++ |++++..|.+.|++|++++|+.+               ++.+.++++|+||++|+.+.      .++
T Consensus       129 ~~~v~iiGaG~~-g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~  207 (275)
T 2hk9_A          129 EKSILVLGAGGA-SRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN  207 (275)
T ss_dssp             GSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC
T ss_pred             CCEEEEECchHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC
Confidence            999999999986 99999999999999999998731               45667789999999999653      355


Q ss_pred             CCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       139 ~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      .++++++.+|+|++|  .+          ++++     +.+ +++++. .++ |..     ||+.|++.+|++|+|.
T Consensus       208 ~~~l~~g~~viDv~~--~~----------t~ll-----~~a-~~~g~~-~v~-g~~-----mlv~q~~~a~~~w~g~  259 (275)
T 2hk9_A          208 YDLIKKDHVVVDIIY--KE----------TKLL-----KKA-KEKGAK-LLD-GLP-----MLLWQGIEAFKIWNGC  259 (275)
T ss_dssp             GGGCCTTSEEEESSS--SC----------CHHH-----HHH-HHTTCE-EEC-SHH-----HHHHHHHHHHHHHHCC
T ss_pred             HHHcCCCCEEEEcCC--Ch----------HHHH-----HHH-HHCcCE-EEC-CHH-----HHHHHHHHHHHHHHCC
Confidence            577899999999999  33          4565     444 556764 344 655     9999999999999986

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.92  E-value=4.7e-25  Score=188.72  Aligned_cols=177  Identities=18%  Similarity=0.180  Sum_probs=144.8

Q ss_pred             hhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccCcc--ccccccccCCCCccCCCcHHHHHHHHHHhCCCCC
Q 027976            3 VQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIM   79 (216)
Q Consensus         3 ~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~~~--n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~   79 (216)
                      ++.++.. ++|++||+|+|+++  .++++.+++ .|+++|++.+  +.|++. |++++.      .|++..|++++++++
T Consensus        47 i~~l~~~-~~G~~vt~P~k~~i--~~~~~~l~~~a~~~gavn~i~~~~g~~~-g~ntd~------~g~~~~l~~~~~~l~  116 (263)
T 2d5c_A           47 LKEVRRA-FRGVNLTLPLKEAA--LAHLDWVSPEAQRIGAVNTVLQVEGRLF-GFNTDA------PGFLEALKAGGIPLK  116 (263)
T ss_dssp             HHHHHHH-CSEEEECTTCTTGG--GGGCSEECHHHHHHTCCCEEEEETTEEE-EECCHH------HHHHHHHHHTTCCCC
T ss_pred             HHhcccc-CceEEEcccCHHHH--HHHHHHHhHHHHHhCCCCcEEccCCeEE-EeCCCH------HHHHHHHHHhCCCCC
Confidence            5667777 99999999999766  778899999 9999999877  678775 555555      899999999999999


Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------CHHhhccCCCEEEEecCCCC------cccC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITSEADIVIAAAGVAN------LVRG  139 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~~ADIVIsatg~p~------~i~~  139 (216)
                      | +++|||+|++ |++++..|.+.|++|++++|+.+              ++.+. +++|+||++|+.+.      .++.
T Consensus       117 ~-~v~iiG~G~~-g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~~  193 (263)
T 2d5c_A          117 G-PALVLGAGGA-GRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSASPLPA  193 (263)
T ss_dssp             S-CEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCCSSCG
T ss_pred             C-eEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCCCCCH
Confidence            9 9999999996 99999999999999999998742              23455 78999999999653      3556


Q ss_pred             CcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 027976          140 SWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       140 ~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~  215 (216)
                      ++++++.+|+|++|+|.+          +++.     +.+ +++++. .+ +|..     ||+.|++.+|++|+|.
T Consensus       194 ~~l~~g~~viD~~~~p~~----------t~l~-----~~a-~~~g~~-~v-~g~~-----mlv~q~~~a~~~w~g~  246 (263)
T 2d5c_A          194 ELFPEEGAAVDLVYRPLW----------TRFL-----REA-KAKGLK-VQ-TGLP-----MLAWQGALAFRLWTGL  246 (263)
T ss_dssp             GGSCSSSEEEESCCSSSS----------CHHH-----HHH-HHTTCE-EE-CSHH-----HHHHHHHHHHHHHHSC
T ss_pred             HHcCCCCEEEEeecCCcc----------cHHH-----HHH-HHCcCE-EE-CcHH-----HHHHHHHHHHHHHhCC
Confidence            788999999999998765          4555     344 566763 35 4655     9999999999999986

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=99.91  E-value=1.7e-25  Score=191.91  Aligned_cols=173  Identities=15%  Similarity=0.107  Sum_probs=139.1

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccccccccccCCCCccCCCcHHHHHHHHHHhCCCCC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIM   79 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~   79 (216)
                      ++++++ +++.|++|++|||  .+..++++. +| ++.+.+++ .++.    .|+|+|+      .|+++.|++.  +++
T Consensus        45 ~~~~~~-~~~~G~nVT~P~K--~~v~~~~d~-~~~A~~iGAvNTi~~~----~G~NTD~------~G~~~~l~~~--~~~  108 (253)
T 3u62_A           45 EIRRIL-EEYDGFNATIPHK--ERVMRYVEP-SEDAQRIKAVNCVFRG----KGYNTDW------VGVVKSLEGV--EVK  108 (253)
T ss_dssp             HHHHHH-HHCSEEEECTTCT--TGGGGGSEE-CHHHHHHTCCCEEETT----EEECCHH------HHHHHHTTTC--CCC
T ss_pred             HHHHHh-hCCCceeecCChH--HHHHHHhCC-CHHHHHcCcceEeecC----EEEcchH------HHHHHHHHhc--CCC
Confidence            356778 8999999999999  555788888 88 78887774 3332    4766776      9999999876  568


Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC---------------CCHHhhccCCCEEEEecCC---CC--ccc
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT---------------KNPEQITSEADIVIAAAGV---AN--LVR  138 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t---------------~~l~~~~~~ADIVIsatg~---p~--~i~  138 (216)
                      | +++|||+|++ |++++..|.+.|+ +|++++|+.               .++.+.++++|+||++|+.   |.  .++
T Consensus       109 ~-~vliiGaGg~-a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i~  186 (253)
T 3u62_A          109 E-PVVVVGAGGA-ARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPVS  186 (253)
T ss_dssp             S-SEEEECCSHH-HHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSCC
T ss_pred             C-eEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCCC
Confidence            8 9999999997 9999999999998 799999873               1344667899999999974   32  356


Q ss_pred             CCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 027976          139 GSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  216 (216)
Q Consensus       139 ~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~~~~~~~~  216 (216)
                      .++++++.+|+|+.|+  +          |+++     +.+ +..|+.. +.+|.+     ||++|++.+|++|+|.+
T Consensus       187 ~~~l~~~~~V~Divy~--~----------T~ll-----~~A-~~~G~~~-~~~Gl~-----MLv~Qa~~af~~wtg~~  240 (253)
T 3u62_A          187 DDSLKNLSLVYDVIYF--D----------TPLV-----VKA-RKLGVKH-IIKGNL-----MFYYQAMENLKIWGIYD  240 (253)
T ss_dssp             HHHHTTCSEEEECSSS--C----------CHHH-----HHH-HHHTCSE-EECTHH-----HHHHHHHHHHHHTTCCC
T ss_pred             HHHhCcCCEEEEeeCC--C----------cHHH-----HHH-HHCCCcE-EECCHH-----HHHHHHHHHHHHHhCCC
Confidence            6788999999999998  4          5677     555 5678730 456888     99999999999999974

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=99.77  E-value=1.5e-19  Score=168.84  Aligned_cols=181  Identities=19%  Similarity=0.157  Sum_probs=132.0

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC-ccc---cccccccCCCCccCCCcHHHHHHHHHHhC-
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH-PLN---IGNLAMRGREPLFIPCTPKGCIELLIRSG-   75 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~-~~n---~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~-   75 (216)
                      +++.++.+++.|++|++|+|  ....++++.+++ ++.+.+++ .+|   .|++. |+++++      .|++..|+... 
T Consensus       277 ~~~~~~~~~~~G~nVTiP~K--~~i~~~ld~~~~~A~~iGAvNti~~~~~~gk~~-g~nTD~------~G~~~~l~~~~~  347 (523)
T 2o7s_A          277 FLQAYSSSDFAGFSCTIPHK--EAALQCCDEVDPLAKSIGAVNTILRRKSDGKLL-GYNTDC------IGSISAIEDGLR  347 (523)
T ss_dssp             HHHHTCSTTEEEEEECTTCH--HHHHHHCSEECHHHHHHTCCSEEEECTTTCCEE-EECCHH------HHHHHHHHHHC-
T ss_pred             HHHHHhcCCCCEEEECCCCH--HHHHHHhcccCHHHHHhCCCeEEEEecCCCeEE-EEcCCH------HHHHHHHHHhhh
Confidence            35678888999999999999  445677788888 88888884 344   35664 655655      89999998651 


Q ss_pred             ------------CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC-----------------HHh-hccCCC
Q 027976           76 ------------VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-----------------PEQ-ITSEAD  125 (216)
Q Consensus        76 ------------~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-----------------l~~-~~~~AD  125 (216)
                                  .+++||+++|+|+||+ |++++..|++.|++|++++|+...                 +.+ .....|
T Consensus       348 ~~~~~~~~~~~~~~l~~k~vlV~GaGGi-g~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~~~~~~~~dl~~~~~~~~D  426 (523)
T 2o7s_A          348 SSGDPSSVPSSSSPLASKTVVVIGAGGA-GKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGM  426 (523)
T ss_dssp             ------------------CEEEECCSHH-HHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTTC-CEETTTTTTC--CCSE
T ss_pred             hccccccccccccccCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceeeHHHhhhccccCce
Confidence                        3578999999999987 999999999999999999987321                 111 122379


Q ss_pred             EEEEecCCCC-------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHH
Q 027976          126 IVIAAAGVAN-------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV  198 (216)
Q Consensus       126 IVIsatg~p~-------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~  198 (216)
                      ++|+++|...       .+....+.+...++|+.|+|.+          ++++     +.+ +..|+.+  .+|.+    
T Consensus       427 ilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~----------T~ll-----~~a-~~~G~~~--i~Gl~----  484 (523)
T 2o7s_A          427 VLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRI----------TRLL-----REA-EESGAIT--VSGSE----  484 (523)
T ss_dssp             EEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSS----------CHHH-----HHH-HTTTCEE--ECHHH----
T ss_pred             EEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCcc----------CHHH-----HHH-HHCCCEE--ECcHH----
Confidence            9999998532       2444455666899999999865          5676     444 5567754  67888    


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 027976          199 AMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       199 amLl~n~~~a~~~~~~~  215 (216)
                       ||++|++.+|++|+|.
T Consensus       485 -mlv~Qa~~~f~lwtg~  500 (523)
T 2o7s_A          485 -MFVRQAYEQFEIFTGL  500 (523)
T ss_dssp             -HHHHHHHHHHHHHHSS
T ss_pred             -HHHHHHHHHHHHHhCC
Confidence             9999999999999986

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=99.56  E-value=7.5e-16  Score=141.19  Aligned_cols=165  Identities=19%  Similarity=0.241  Sum_probs=119.9

Q ss_pred             hhhccccCccEEEE---ccCCCCCCCHHHHHhcCCcccccCccCccc--cccccccCCCCccCCCcHHHHHHHHHHhCCC
Q 027976            3 VQKMKFLMPCQIII---RIHQLMHLDEGKILDAVSLEKDVDGFHPLN--IGNLAMRGREPLFIPCTPKGCIELLIRSGVE   77 (216)
Q Consensus         3 ~~~~~~~~~~Gi~v---~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n--~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~   77 (216)
                      ++.++ .++.|++|   +.|++     .++++.+++  -++  ++++  -++.. |       +++..|++..|+..+.+
T Consensus       122 v~~l~-~~f~GinvED~T~P~k-----~~il~~l~~--avN--t~vf~dD~~gt-g-------ntd~aG~~~AL~~~g~~  183 (439)
T 2dvm_A          122 VKAIA-PTFGGINLEDIASPKC-----FYILERLRE--ELD--IPVFHDDQQGT-A-------AVVLAGLLNALKVVGKK  183 (439)
T ss_dssp             HHHTG-GGCSEEEECSCCTTHH-----HHHHHHHHH--HCS--SCEEEHHHHHH-H-------HHHHHHHHHHHHHHTCC
T ss_pred             HHHhC-ccCcEEEEEeCCCchH-----HHHHHHHHH--hcC--EEEEeCCCcEE-e-------ehHHHHHHHHHHHhCCC
Confidence            45555 58899999   99999     566666654  122  2222  22221 2       33449999999999999


Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEe----CC----C-CC-----------------------HHhhcc
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVH----AL----T-KN-----------------------PEQITS  122 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~----~~----t-~~-----------------------l~~~~~  122 (216)
                      +++++++|+|+|++ |++++.+|...|+   +|++++    |+    . .+                       +.+.++
T Consensus       184 l~~~rvlvlGAGgA-g~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~  262 (439)
T 2dvm_A          184 ISEITLALFGAGAA-GFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALK  262 (439)
T ss_dssp             TTTCCEEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHT
T ss_pred             ccCCEEEEECccHH-HHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhc
Confidence            99999999999998 9999999999998   699999    75    1 12                       345567


Q ss_pred             CCCEEEEecCCC-CcccCCc---ccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHH
Q 027976          123 EADIVIAAAGVA-NLVRGSW---LKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV  198 (216)
Q Consensus       123 ~ADIVIsatg~p-~~i~~~~---i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~  198 (216)
                      ++|++|++|+.| +.+++++   +.++.+|+|+ |||.+          +.+.     +.+ ++.|+.+ +..|.+    
T Consensus       263 ~aDVlInaT~~~~G~~~~e~v~~m~~~~iVfDL-ynP~~----------t~~~-----~~A-~~~G~~i-vatG~~----  320 (439)
T 2dvm_A          263 DADVLISFTRPGPGVIKPQWIEKMNEDAIVFPL-ANPVP----------EILP-----EEA-KKAGARI-VATGRS----  320 (439)
T ss_dssp             TCSEEEECSCCCSSSSCHHHHTTSCTTCEEEEC-CSSSC----------SSCH-----HHH-HHHTCSE-ECBSCS----
T ss_pred             cCCEEEEcCCCccCCCChHHHHhcCCCCEEEEC-CCCCC----------cchH-----HHH-HHcCCeE-EcCCCc----
Confidence            899999999984 5555444   5678899999 99976          4566     555 5567733 336877    


Q ss_pred             HHHHHHHHHHH
Q 027976          199 AMLLSNTLDSA  209 (216)
Q Consensus       199 amLl~n~~~a~  209 (216)
                       ||..|+..++
T Consensus       321 -ml~~Q~nn~~  330 (439)
T 2dvm_A          321 -DYPNQINNLL  330 (439)
T ss_dssp             -SSSSBCCGGG
T ss_pred             -hhHHHHHHHh
Confidence             8888865443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.40  E-value=4.7e-14  Score=121.70  Aligned_cols=181  Identities=16%  Similarity=0.083  Sum_probs=117.8

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHHHHHHHHh-CCCCCCCeEEEEc
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIG   87 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~-~~~l~gk~v~ViG   87 (216)
                      .+..|++++.|++...+...+.+.++..+. .-+.++|+..+. .  ..+ ++++..|+++.|++. +.+++||+++|+|
T Consensus        52 ~~~~g~~~t~~~~~G~~~~~~~~~~~~~~~-~~~gavnt~~~~-~--~~G-~nTd~~g~~~~l~~~~~~~l~gk~vlVtG  126 (287)
T 1lu9_A           52 RGGKEKQSTAIFVGGGDMAAGERVFEAVKK-RFFGPFRVSCML-D--SNG-SNTTAAAGVALVVKAAGGSVKGKKAVVLA  126 (287)
T ss_dssp             CCGGGGGGEEEEEECSCHHHHHHHHHHHHH-HCBTTBCCEEEE-C--STT-HHHHHHHHHHHHHHHTTSCCTTCEEEEET
T ss_pred             cCccccccceEEEccchHHHHHHHHHHHHH-hcCCCeEEEEec-C--CCc-CCchHHHHHHHHHHhhccCCCCCEEEEEC
Confidence            456666777776555554444433333221 112334433221 1  112 456679999999988 8889999999999


Q ss_pred             -CCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------------CHHhhccCCCEEEEecCCCC---cc
Q 027976           88 -RSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------NPEQITSEADIVIAAAGVAN---LV  137 (216)
Q Consensus        88 -~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------------~l~~~~~~ADIVIsatg~p~---~i  137 (216)
                       +|++ |++++..|+++|++|++++|+..                          ++.+.++++|+||+++|...   .+
T Consensus       127 aaGGi-G~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~ag~g~~~~~~  205 (287)
T 1lu9_A          127 GTGPV-GMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQ  205 (287)
T ss_dssp             CSSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCCTTCCSBCH
T ss_pred             CCcHH-HHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECCCccccCCCh
Confidence             6665 99999999999999999988621                          12455677899999997532   12


Q ss_pred             -cCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHh------hHcceecccCCcccHHHHHHHHHHHHHHHH
Q 027976          138 -RGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAM------RLASVITPVPGGVGPMTVAMLLSNTLDSAK  210 (216)
Q Consensus       138 -~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~------~~~~~~tpvpgGvGp~T~amLl~n~~~a~~  210 (216)
                       +.+.+++...++|+.|.+...    .  .+++++      ..+      +..++.  +.+|++     ||++|++.+ +
T Consensus       206 ~~~~~~~~~~~~~dvn~~~~~~----i--~~t~ll------~~a~~~~~~~~~G~~--~v~gl~-----ml~~qa~~a-~  265 (287)
T 1lu9_A          206 AAWQNESSIEIVADYNAQPPLG----I--GGIDAT------DKGKEYGGKRAFGAL--GIGGLK-----LKLHRACIA-K  265 (287)
T ss_dssp             HHHTTCTTCCEEEECCCSSSCS----B--TTSCTT------CEEEEETTEEEECHH--HHHHHH-----HHHHHHHHH-H
T ss_pred             hHcCchHHHHHHHHhhhhhhHH----h--hcchHH------hhccccCCCccccce--eECchH-----HHHHHHHHH-H
Confidence             233356778999999986430    0  012343      222      445663  467877     999999988 8


Q ss_pred             HHhCC
Q 027976          211 RAYGF  215 (216)
Q Consensus       211 ~~~~~  215 (216)
                      .|++.
T Consensus       266 ~~~~~  270 (287)
T 1lu9_A          266 LFESS  270 (287)
T ss_dssp             HTSCS
T ss_pred             HhhCC
Confidence            88875

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.20  E-value=1.3e-10  Score=100.82  Aligned_cols=120  Identities=21%  Similarity=0.328  Sum_probs=92.8

Q ss_pred             HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------CCHHhhccCCCEEEEecCCCC
Q 027976           72 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        72 ~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      +..+.++.|+++.|||.|.+ |+.++..|...|++|++++++.                .++.+.+++||+||++++. +
T Consensus       149 ~~~~~~l~g~~v~IiG~G~i-G~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~  226 (300)
T 2rir_A          149 QHTDYTIHGSQVAVLGLGRT-GMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-M  226 (300)
T ss_dssp             HTCSSCSTTSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-C
T ss_pred             HhcCCCCCCCEEEEEcccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-h
Confidence            34567899999999999886 9999999999999999998762                2456678899999999996 3


Q ss_pred             cccC---CcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHccee---cc-cCCcccHHHHHHHHHHHHHH
Q 027976          136 LVRG---SWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI---TP-VPGGVGPMTVAMLLSNTLDS  208 (216)
Q Consensus       136 ~i~~---~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~---tp-vpgGvGp~T~amLl~n~~~a  208 (216)
                      .+..   +.+++++++||+++.+..                ++++.+ +..+..   .| +||+++|.+.+.|+.|.+..
T Consensus       227 ~i~~~~~~~mk~g~~lin~a~g~~~----------------~~~~~a-~~~G~~~i~~pg~~g~v~~a~a~~l~~~~~~~  289 (300)
T 2rir_A          227 ILNQTVLSSMTPKTLILDLASRPGG----------------TDFKYA-EKQGIKALLAPGLPGIVAPKTAGQILANVLSK  289 (300)
T ss_dssp             CBCHHHHTTSCTTCEEEECSSTTCS----------------BCHHHH-HHHTCEEEECCCHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhCHHHHHhCCCCCEEEEEeCCCCC----------------cCHHHH-HHCCCEEEECCCCCCcHHHHHHHHHHHHHHHH
Confidence            4443   346889999999986532                233333 444443   25 78889999999999998876


Q ss_pred             HH
Q 027976          209 AK  210 (216)
Q Consensus       209 ~~  210 (216)
                      +-
T Consensus       290 ~l  291 (300)
T 2rir_A          290 LL  291 (300)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.17  E-value=1.1e-10  Score=90.31  Aligned_cols=91  Identities=16%  Similarity=0.334  Sum_probs=75.7

Q ss_pred             CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------------CCHHhhccCC
Q 027976           62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------KNPEQITSEA  124 (216)
Q Consensus        62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------~~l~~~~~~A  124 (216)
                      +.+...++.++...    +++++|||+|++ |+.++..|...|++|++++++.                 .++.+.++++
T Consensus         7 sv~~~a~~~~~~~~----~~~v~iiG~G~i-G~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   81 (144)
T 3oj0_A            7 SIPSIVYDIVRKNG----GNKILLVGNGML-ASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNN   81 (144)
T ss_dssp             SHHHHHHHHHHHHC----CCEEEEECCSHH-HHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTC
T ss_pred             cHHHHHHHHHHhcc----CCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCC
Confidence            35566777777654    899999999876 9999999999999999998762                 3566778899


Q ss_pred             CEEEEecCCCCc-ccCCcccCCcEEEEeeeCCcc
Q 027976          125 DIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVD  157 (216)
Q Consensus       125 DIVIsatg~p~~-i~~~~i~~g~vViDvg~~~~~  157 (216)
                      |+||++||.++. +..++++++.+++|++.+++.
T Consensus        82 Divi~at~~~~~~~~~~~l~~g~~vid~~~p~~~  115 (144)
T 3oj0_A           82 DVIITATSSKTPIVEERSLMPGKLFIDLGNPPNI  115 (144)
T ss_dssp             SEEEECSCCSSCSBCGGGCCTTCEEEECCSSCSB
T ss_pred             CEEEEeCCCCCcEeeHHHcCCCCEEEEccCCccC
Confidence            999999998876 678999999999999987654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.08  E-value=8.1e-10  Score=95.54  Aligned_cols=129  Identities=20%  Similarity=0.281  Sum_probs=95.2

Q ss_pred             CcHHHHHH-HHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------CCHHhhccCC
Q 027976           62 CTPKGCIE-LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEA  124 (216)
Q Consensus        62 ~Ta~g~~~-~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~l~~~~~~A  124 (216)
                      ++++.++. +|...+.++.|+++.|||.|.+ |+.++..|...|++|++++++.                .++.+.++++
T Consensus       136 svae~a~~~~l~~~~~~l~g~~v~IiG~G~i-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~a  214 (293)
T 3d4o_A          136 PTAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDV  214 (293)
T ss_dssp             HHHHHHHHHHHHHCSSCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTC
T ss_pred             hHHHHHHHHHHHhcCCCCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCC
Confidence            34555554 4455678899999999999986 9999999999999999998762                1355678999


Q ss_pred             CEEEEecCCCCcccCC---cccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHccee----cccCCcccHHH
Q 027976          125 DIVIAAAGVANLVRGS---WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI----TPVPGGVGPMT  197 (216)
Q Consensus       125 DIVIsatg~p~~i~~~---~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~----tpvpgGvGp~T  197 (216)
                      |+||.+++. +.+..+   .++++.++||+++.|.                +++++.+ +..+..    .-.|+.++|.|
T Consensus       215 DvVi~~~p~-~~i~~~~l~~mk~~~~lin~ar~~~----------------~~~~~~a-~~~Gv~~~~~~~l~~~v~p~~  276 (293)
T 3d4o_A          215 DVCINTIPA-LVVTANVLAEMPSHTFVIDLASKPG----------------GTDFRYA-EKRGIKALLVPGLPGIVAPKT  276 (293)
T ss_dssp             SEEEECCSS-CCBCHHHHHHSCTTCEEEECSSTTC----------------SBCHHHH-HHHTCEEEECCCHHHHHCHHH
T ss_pred             CEEEECCCh-HHhCHHHHHhcCCCCEEEEecCCCC----------------CCCHHHH-HHCCCEEEECCCCCcccCHHH
Confidence            999999975 344433   3588999999998653                2344333 444432    23456777999


Q ss_pred             HHHHHHHHHHHH
Q 027976          198 VAMLLSNTLDSA  209 (216)
Q Consensus       198 ~amLl~n~~~a~  209 (216)
                      .+.++.|.+..+
T Consensus       277 a~~~~~~~~~~~  288 (293)
T 3d4o_A          277 AGRILADVLVKL  288 (293)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.88  E-value=6.8e-09  Score=94.86  Aligned_cols=95  Identities=21%  Similarity=0.307  Sum_probs=78.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCE
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADI  126 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADI  126 (216)
                      +.|+...+-.+.+..+..+.||+|+|+|.|.+ |+++|..|...|++|++++++.             .++.+.+++||+
T Consensus       191 ~Gt~~slldgi~ratg~~L~GktVgIiG~G~I-G~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADV  269 (436)
T 3h9u_A          191 YGCRESLVDGIKRATDVMIAGKTACVCGYGDV-GKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHI  269 (436)
T ss_dssp             HHHHHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSE
T ss_pred             ccchHHHHHHHHHhcCCcccCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCE
Confidence            44554444555556788999999999999886 9999999999999999998752             267889999999


Q ss_pred             EEEecCCCCcccCCcc---cCCcEEEEeeeCC
Q 027976          127 VIAAAGVANLVRGSWL---KPGAVVLDVGTCP  155 (216)
Q Consensus       127 VIsatg~p~~i~~~~i---~~g~vViDvg~~~  155 (216)
                      ||.+++..+.++.++|   ++|++|||++...
T Consensus       270 Vilt~gt~~iI~~e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          270 FVTTTGNDDIITSEHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             EEECSSCSCSBCTTTGGGCCTTEEEEECSSSG
T ss_pred             EEECCCCcCccCHHHHhhcCCCcEEEEeCCCC
Confidence            9999988888887776   7899999999543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.84  E-value=3.5e-09  Score=95.67  Aligned_cols=140  Identities=12%  Similarity=0.122  Sum_probs=89.4

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-----------------CCHHhhccCC
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-----------------KNPEQITSEA  124 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-----------------~~l~~~~~~A  124 (216)
                      +++..++..++...++.|++|+|+|+|++ |+.++..|...|+ +|++++|+.                 .++.+.+.++
T Consensus       150 ~a~~av~~a~~~~~~l~g~~VlIiGaG~i-G~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~a  228 (404)
T 1gpj_A          150 IGSAAVELAERELGSLHDKTVLVVGAGEM-GKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARS  228 (404)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEESCCHH-HHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTC
T ss_pred             HHHHHHHHHHHHhccccCCEEEEEChHHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCC
Confidence            34444454442222578999999999886 9999999999998 899998863                 1344566789


Q ss_pred             CEEEEecCCCCc-ccCCcc---------cCCcEEEEeeeCCccCCCCCCC--CCCCeEecccCh-HHHhh---Hcceecc
Q 027976          125 DIVIAAAGVANL-VRGSWL---------KPGAVVLDVGTCPVDVSVDPSC--EYGYRLMGDVCY-EEAMR---LASVITP  188 (216)
Q Consensus       125 DIVIsatg~p~~-i~~~~i---------~~g~vViDvg~~~~~~~~~~~~--~~~~~l~GDvd~-~~~~~---~~~~~tp  188 (216)
                      |+||++||.+.. ++.+.+         .++.+++|++++++.   ++.-  ..+-.++ |+|. ....+   ..+.  .
T Consensus       229 DvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~P~~i---~~~l~~l~~v~l~-d~d~l~~~~~~~~~~r~--~  302 (404)
T 1gpj_A          229 DVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDV---EEGVENIEDVEVR-TIDDLRVIARENLERRR--K  302 (404)
T ss_dssp             SEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSB---CTTGGGSTTEEEE-EHHHHHHHHHHHHHHHH--T
T ss_pred             CEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccCCCCC---CccccccCCeEEE-eHhhHHHHHHHHHHHHH--H
Confidence            999999998775 333332         146799999986543   1100  0011121 2221 11111   1223  2


Q ss_pred             cCCcccHHHHHHHHHHHHHHHHHHhC
Q 027976          189 VPGGVGPMTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       189 vpgGvGp~T~amLl~n~~~a~~~~~~  214 (216)
                      ...|..     ||++|.+.+|+.|++
T Consensus       303 ~~~~~~-----~li~q~~~~f~~w~~  323 (404)
T 1gpj_A          303 EIPKVE-----KLIEEELSTVEEELE  323 (404)
T ss_dssp             THHHHH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHHHHHHHH
Confidence            234544     999999999999985

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.81  E-value=1.3e-08  Score=93.24  Aligned_cols=86  Identities=23%  Similarity=0.295  Sum_probs=73.9

Q ss_pred             HHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCCc
Q 027976           70 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANL  136 (216)
Q Consensus        70 ~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~~  136 (216)
                      +.+..+..+.||+++|+|.|.+ |+.+|..|...|++|++++++.             .++.+.+++||+||+++|.++.
T Consensus       237 I~Ratg~~L~GKTVgVIG~G~I-Gr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~atgt~~l  315 (464)
T 3n58_A          237 IRRGTDVMMAGKVAVVCGYGDV-GKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTTGNKDV  315 (464)
T ss_dssp             HHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECCSSSSS
T ss_pred             HHHhcCCcccCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECCCCccc
Confidence            3345789999999999999985 9999999999999999997642             2578899999999999998888


Q ss_pred             ccCCcc---cCCcEEEEeeeCCc
Q 027976          137 VRGSWL---KPGAVVLDVGTCPV  156 (216)
Q Consensus       137 i~~~~i---~~g~vViDvg~~~~  156 (216)
                      ++.+.|   |+++++|+++....
T Consensus       316 I~~e~l~~MK~GAILINvGRgdv  338 (464)
T 3n58_A          316 ITIDHMRKMKDMCIVGNIGHFDN  338 (464)
T ss_dssp             BCHHHHHHSCTTEEEEECSSSTT
T ss_pred             cCHHHHhcCCCCeEEEEcCCCCc
Confidence            887776   89999999997654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.81  E-value=1.8e-09  Score=96.23  Aligned_cols=136  Identities=16%  Similarity=0.134  Sum_probs=87.0

Q ss_pred             hhhccccCccEEEE-ccCCCCCCCHHHHHhcCCc-ccccCcc-CccccccccccCCCCccCCCcHHHHHHHHHHhCCCCC
Q 027976            3 VQKMKFLMPCQIII-RIHQLMHLDEGKILDAVSL-EKDVDGF-HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIM   79 (216)
Q Consensus         3 ~~~~~~~~~~Gi~v-~~Pl~~~~~~~~i~~~i~p-~KDvdg~-~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~   79 (216)
                      ++.++..++.|+++ ++|++.+  ...+++.+++ +.-+-.+ ...|+.+...|  + +|.          +... ..++
T Consensus       103 ~~~l~~~gi~~~~~etvp~k~~--~~~~l~~~s~~Ag~~a~~~gA~nt~~~~~g--~-G~~----------l~~l-~~l~  166 (361)
T 1pjc_A          103 TEQLMRVGLTAIAYETVELPNR--SLPLLTPMSIIAGRLSVQFGARFLERQQGG--R-GVL----------LGGV-PGVK  166 (361)
T ss_dssp             HHHHHHHTCEEEEGGGCCCTTS--CCTTTHHHHHHHHHHHHHHHHHHTSGGGTS--C-CCC----------TTCB-TTBC
T ss_pred             HHHHHHcCCeEEEEeeeEcccC--CccccCcchHHHHHHHHHHHHHHHhhccCC--C-cee----------ccCC-CCCC
Confidence            56677788888887 8887632  1233333333 2221000 23444333222  1 222          0000 1367


Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhccCCCEEEEecCCCCc--
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVANL--  136 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~p~~--  136 (216)
                      +++|+|+|+|++ |+.++..|...|++|++++++..                     ++.+.++++|+||++++.|..  
T Consensus       167 ~~~VlViGaGgv-G~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~  245 (361)
T 1pjc_A          167 PGKVVILGGGVV-GTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA  245 (361)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred             CCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCC
Confidence            899999999886 99999999999999999987621                     233556789999999987541  


Q ss_pred             ---cc---CCcccCCcEEEEeeeCC
Q 027976          137 ---VR---GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       137 ---i~---~~~i~~g~vViDvg~~~  155 (216)
                         +.   -+.++++.+++|+++++
T Consensus       246 ~~li~~~~~~~~~~g~~ivdv~~~~  270 (361)
T 1pjc_A          246 PILVPASLVEQMRTGSVIVDVAVDQ  270 (361)
T ss_dssp             CCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             CeecCHHHHhhCCCCCEEEEEecCC
Confidence               33   24568899999999976

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.79  E-value=2.3e-08  Score=91.22  Aligned_cols=94  Identities=21%  Similarity=0.306  Sum_probs=77.4

Q ss_pred             cHHHHHHHHH-HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEE
Q 027976           63 TPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVI  128 (216)
Q Consensus        63 Ta~g~~~~L~-~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVI  128 (216)
                      |...++..+. ..+..+.||+++|+|.|.+ |+.+|..|...|++|++++++.             .++.+.+++||+||
T Consensus       202 t~~s~~~gi~rat~~~L~GktV~ViG~G~I-Gk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi  280 (435)
T 3gvp_A          202 CRESILDGLKRTTDMMFGGKQVVVCGYGEV-GKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVI  280 (435)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEE
T ss_pred             hHHHHHHHHHHhhCceecCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEE
Confidence            3445555444 4678899999999999985 9999999999999999998652             35788999999999


Q ss_pred             EecCCCCcccCCcc---cCCcEEEEeeeCCcc
Q 027976          129 AAAGVANLVRGSWL---KPGAVVLDVGTCPVD  157 (216)
Q Consensus       129 satg~p~~i~~~~i---~~g~vViDvg~~~~~  157 (216)
                      +++|.++.++.++|   ++++++++++....|
T Consensus       281 ~atgt~~lI~~e~l~~MK~gailINvgrg~~E  312 (435)
T 3gvp_A          281 TCTGNKNVVTREHLDRMKNSCIVCNMGHSNTE  312 (435)
T ss_dssp             ECSSCSCSBCHHHHHHSCTTEEEEECSSTTTT
T ss_pred             ECCCCcccCCHHHHHhcCCCcEEEEecCCCcc
Confidence            99998888887765   899999999977543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.75  E-value=2.6e-08  Score=89.67  Aligned_cols=123  Identities=20%  Similarity=0.214  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------------------------CHH
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------------------------NPE  118 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------------------------~l~  118 (216)
                      +.+++|+|+|+|.+ |+.++..|...|++|++++++..                                       ++.
T Consensus       182 v~~~kV~ViG~G~i-G~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          182 VKPASALVLGVGVA-GLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             ECCCEEEEESCSHH-HHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             cCCCEEEEECchHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            58899999999875 99999999999999999977531                                       245


Q ss_pred             hhccCCCEEEEecCC-----CCcccCCcc---cCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccC
Q 027976          119 QITSEADIVIAAAGV-----ANLVRGSWL---KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP  190 (216)
Q Consensus       119 ~~~~~ADIVIsatg~-----p~~i~~~~i---~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  190 (216)
                      +.+++||+||+++..     |.+++.+++   ++|+++||++..+-- ..+.+.++ +.+.    ...+  ..-+.+=.|
T Consensus       261 e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG-~~e~t~~~-~~~~----~~gV--~~~~v~nlP  332 (381)
T 3p2y_A          261 DAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGG-NCELTEPG-RTIV----HHGV--TITSPLNLP  332 (381)
T ss_dssp             HHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTC-SBTTCCTT-CEEE----ETTE--EEECCSCTG
T ss_pred             HHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCC-ccccccCC-CeEE----ECCE--EEEeeCCCc
Confidence            788999999998743     345787775   789999999987521 00001010 0110    0011  122233356


Q ss_pred             CcccHHHHHHHHHHHHHHHH
Q 027976          191 GGVGPMTVAMLLSNTLDSAK  210 (216)
Q Consensus       191 gGvGp~T~amLl~n~~~a~~  210 (216)
                      |-+ |.|...++.|.+..+-
T Consensus       333 ~~v-p~tAS~~~s~~l~~~l  351 (381)
T 3p2y_A          333 ATM-PEHASELYAKNVTALL  351 (381)
T ss_dssp             GGS-HHHHHHHHHHHHHHHH
T ss_pred             hhh-HHHHHHHHHHHHHHHH
Confidence            656 9999999888876654

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.72  E-value=5.1e-08  Score=87.84  Aligned_cols=91  Identities=21%  Similarity=0.284  Sum_probs=76.5

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC----C-----------------------
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL----T-----------------------  114 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~----t-----------------------  114 (216)
                      +..|++..++-.+.++++.+|+|+|+|.+ |..++.+|...|+ +|++++|+    .                       
T Consensus       175 ~lAal~~A~~i~g~~l~~~kVVv~GAGaA-G~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~  253 (388)
T 1vl6_A          175 VSAAFLNALKLTEKKIEEVKVVVNGIGAA-GYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERL  253 (388)
T ss_dssp             HHHHHHHHHHHHTCCTTTCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCC
T ss_pred             HHHHHHHHHHHhCCCCCCcEEEEECCCHH-HHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCc
Confidence            34556666777788999999999999987 9999999999998 79999886    1                       


Q ss_pred             -CCHHhhccCCCEEEEecCCCCcccCCccc---CCcEEEEeeeCCc
Q 027976          115 -KNPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTCPV  156 (216)
Q Consensus       115 -~~l~~~~~~ADIVIsatg~p~~i~~~~i~---~g~vViDvg~~~~  156 (216)
                       .+|.+.+++||++|.+++ |..++++|++   ++.+|+|++ ||.
T Consensus       254 ~~~L~eav~~ADVlIG~Sa-p~l~t~emVk~Ma~~pIIfalS-NPt  297 (388)
T 1vl6_A          254 SGDLETALEGADFFIGVSR-GNILKPEWIKKMSRKPVIFALA-NPV  297 (388)
T ss_dssp             CSCHHHHHTTCSEEEECSC-SSCSCHHHHTTSCSSCEEEECC-SSS
T ss_pred             hhhHHHHHccCCEEEEeCC-CCccCHHHHHhcCCCCEEEEcC-CCC
Confidence             247899999999999988 8889999985   467999999 454

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.54  E-value=2.2e-07  Score=86.30  Aligned_cols=83  Identities=27%  Similarity=0.332  Sum_probs=71.3

Q ss_pred             HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCCcccC
Q 027976           73 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRG  139 (216)
Q Consensus        73 ~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~~i~~  139 (216)
                      ..+.++.||++.|+|.|.+ |+.+|+.|...|++|++++++.             .++.+.+++||+||++++.++.++.
T Consensus       270 ~~g~~L~GktVgIIG~G~I-G~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~~t~~lI~~  348 (494)
T 3d64_A          270 ATDVMIAGKIAVVAGYGDV-GKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVINH  348 (494)
T ss_dssp             HHCCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECSSSSCSBCH
T ss_pred             ccccccCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECCCcccccCH
Confidence            3577899999999999885 9999999999999999998763             2577889999999999987778877


Q ss_pred             Cc---ccCCcEEEEeeeCCc
Q 027976          140 SW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       140 ~~---i~~g~vViDvg~~~~  156 (216)
                      +.   +|+|+++||++....
T Consensus       349 ~~l~~MK~gAilINvgrg~v  368 (494)
T 3d64_A          349 DHMKAMRHNAIVCNIGHFDS  368 (494)
T ss_dssp             HHHHHCCTTEEEEECSSSSC
T ss_pred             HHHhhCCCCcEEEEcCCCcc
Confidence            65   489999999997654

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.50  E-value=4.1e-07  Score=84.21  Aligned_cols=83  Identities=29%  Similarity=0.378  Sum_probs=69.5

Q ss_pred             HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCCcc
Q 027976           71 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLV  137 (216)
Q Consensus        71 L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~~i  137 (216)
                      .+..+..+.||+++|+|+|+ +|+++|..|+..|++|+++.++.             .++.+..+.+|+++.++|.++.+
T Consensus       256 ~r~tg~~L~GKtVvVtGaGg-IG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~atG~~~vl  334 (488)
T 3ond_A          256 MRATDVMIAGKVAVVAGYGD-VGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDII  334 (488)
T ss_dssp             HHHHCCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECSSCSCSB
T ss_pred             HHHcCCcccCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCCCChhhh
Confidence            34578889999999999996 59999999999999999997752             24567788899999999988877


Q ss_pred             cCC---cccCCcEEEEeeeC
Q 027976          138 RGS---WLKPGAVVLDVGTC  154 (216)
Q Consensus       138 ~~~---~i~~g~vViDvg~~  154 (216)
                      ..+   .++++++|++++..
T Consensus       335 ~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          335 MLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             CHHHHTTSCTTEEEEESSST
T ss_pred             hHHHHHhcCCCeEEEEcCCC
Confidence            653   45789999999975

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.49  E-value=2.7e-09  Score=98.43  Aligned_cols=78  Identities=18%  Similarity=0.217  Sum_probs=57.4

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCCC----------------------CHHhhccCCCEEEEec
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTK----------------------NPEQITSEADIVIAAA  131 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t~----------------------~l~~~~~~ADIVIsat  131 (216)
                      +.++++++|+|+|+|++ |++++..|++. +++|++++|+..                      ++.+.++++|+||+++
T Consensus        18 ~~~l~~k~VlIiGAGgi-G~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFV-AQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             -----CEEEEEECCSTT-HHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             ccCCCCCEEEEECChHH-HHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            45678999999999886 99999999998 678999988521                      2345567899999999


Q ss_pred             CCCCc--ccCCcccCCcEEEEeee
Q 027976          132 GVANL--VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       132 g~p~~--i~~~~i~~g~vViDvg~  153 (216)
                      |....  +....++.+..++|+.|
T Consensus        97 p~~~~~~v~~a~l~~g~~vvd~~~  120 (467)
T 2axq_A           97 PYTFHPNVVKSAIRTKTDVVTSSY  120 (467)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECSC
T ss_pred             chhhhHHHHHHHHhcCCEEEEeec
Confidence            86421  44455677888999987

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.49  E-value=2.9e-07  Score=85.15  Aligned_cols=82  Identities=22%  Similarity=0.297  Sum_probs=70.2

Q ss_pred             hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCCcccCC
Q 027976           74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRGS  140 (216)
Q Consensus        74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~~i~~~  140 (216)
                      .+..+.||++.|||.|.+ |+.+|..|...|++|++++++.             .++.+.+++||+||++++.++.++.+
T Consensus       251 ~~~~l~GktVgIIG~G~I-G~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~~t~~lI~~~  329 (479)
T 1v8b_A          251 TDFLISGKIVVICGYGDV-GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLE  329 (479)
T ss_dssp             HCCCCTTSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSSSBCHH
T ss_pred             cccccCCCEEEEEeeCHH-HHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECCChhhhcCHH
Confidence            567899999999999885 9999999999999999998763             25778899999999999888888765


Q ss_pred             c---ccCCcEEEEeeeCCc
Q 027976          141 W---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       141 ~---i~~g~vViDvg~~~~  156 (216)
                      .   +|+|++++|++....
T Consensus       330 ~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          330 HLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             HHTTCCTTCEEEECSSTTT
T ss_pred             HHhhcCCCcEEEEeCCCCc
Confidence            5   578999999997644

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.47  E-value=1.9e-07  Score=84.67  Aligned_cols=123  Identities=22%  Similarity=0.234  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------------------------------
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------------------------  115 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------------------------  115 (216)
                      +.+.+|+|+|+|.+ |..++..+...|++|++++++..                                          
T Consensus       188 v~~~kV~ViG~G~i-G~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          188 VPAAKIFVMGAGVA-GLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             ECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             cCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            57899999999865 99999999999999999976531                                          


Q ss_pred             -CHHhhccCCCEEEEecCC-----CCcccCCcc---cCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHccee
Q 027976          116 -NPEQITSEADIVIAAAGV-----ANLVRGSWL---KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI  186 (216)
Q Consensus       116 -~l~~~~~~ADIVIsatg~-----p~~i~~~~i---~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~  186 (216)
                       ++.+.+++|||||+++..     |.+++++++   ++|++|||++..+-- ..+.+.+ ++.+.    ...+  ..-++
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG-~~e~t~~-~~~~~----~~GV--~~~gv  338 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGG-NIEGAEA-GKVTE----VGGV--RIVGH  338 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTC-SBTTCCT-TEEEE----ETTE--EEEEC
T ss_pred             hHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCC-CccccCC-CCeEE----ECCE--EEEEe
Confidence             245567899999998643     445788775   689999999986521 0000100 01111    0111  11222


Q ss_pred             cccCCcccHHHHHHHHHHHHHHHH
Q 027976          187 TPVPGGVGPMTVAMLLSNTLDSAK  210 (216)
Q Consensus       187 tpvpgGvGp~T~amLl~n~~~a~~  210 (216)
                      +=.||-+ |.|...++.|.+..+-
T Consensus       339 ~nlP~~v-p~tAS~~ls~~~~~~l  361 (405)
T 4dio_A          339 LNVAGRI-AASASLLYAKNLVTFL  361 (405)
T ss_dssp             SSGGGGG-HHHHHHHHHHHHHHHH
T ss_pred             CCCCccC-HHHHHHHHHHHHHHHH
Confidence            3346555 9999999888776553

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.46  E-value=5.1e-07  Score=80.88  Aligned_cols=78  Identities=23%  Similarity=0.314  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------C------------------------
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------N------------------------  116 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------~------------------------  116 (216)
                      .+.|++|+|+|+|.+ |+.++..+...|++|++++++..                .                        
T Consensus       169 ~l~g~~V~ViGaG~i-G~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          169 TVPPARVLVFGVGVA-GLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             EECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            578999999999875 99999999999999999976531                1                        


Q ss_pred             ---HHhhccCCCEEEEec---CC--CCcccCCc---ccCCcEEEEeeeCC
Q 027976          117 ---PEQITSEADIVIAAA---GV--ANLVRGSW---LKPGAVVLDVGTCP  155 (216)
Q Consensus       117 ---l~~~~~~ADIVIsat---g~--p~~i~~~~---i~~g~vViDvg~~~  155 (216)
                         +.+.++++|+||+++   |.  |..++.++   ++++.+++|+++++
T Consensus       248 ~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~  297 (384)
T 1l7d_A          248 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  297 (384)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCC
Confidence               456678899999999   53  33455544   57899999999865

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=98.39  E-value=5.4e-07  Score=81.33  Aligned_cols=90  Identities=20%  Similarity=0.307  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC--------C-------------------C
Q 027976           64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL--------T-------------------K  115 (216)
Q Consensus        64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~--------t-------------------~  115 (216)
                      ..|.+..++-.+..++..+|+|+|+|-+ |.+++.+|...|+ +|++|+++        +                   .
T Consensus       172 lAall~al~l~g~~l~d~kVVi~GAGaA-G~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~  250 (398)
T 2a9f_A          172 LAAIFNSLKLLKKSLDEVSIVVNGGGSA-GLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSG  250 (398)
T ss_dssp             HHHHHHHHHTTTCCTTSCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCC
T ss_pred             HHHHHHHHHHhCCCCCccEEEEECCCHH-HHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchh
Confidence            4566777777888999999999999876 9999999999999 89999764        1                   1


Q ss_pred             CHHhhccCCCEEEEecCCCCcccCCccc---CCcEEEEeeeCCc
Q 027976          116 NPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTCPV  156 (216)
Q Consensus       116 ~l~~~~~~ADIVIsatg~p~~i~~~~i~---~g~vViDvg~~~~  156 (216)
                      +|.+.++.||++|.+.+ |+.+++||++   ++.+|++++ ||.
T Consensus       251 ~L~eav~~ADV~IG~Sa-pgl~T~EmVk~Ma~~pIIfals-NPt  292 (398)
T 2a9f_A          251 TLEDALEGADIFIGVSA-PGVLKAEWISKMAARPVIFAMA-NPI  292 (398)
T ss_dssp             SCSHHHHTTCSEEECCS-TTCCCHHHHHTSCSSCEEEECC-SSS
T ss_pred             hHHHHhccCCEEEecCC-CCCCCHHHHHhhCCCCEEEECC-CCC
Confidence            36788999999998876 8899999974   799999999 554

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.33  E-value=4.5e-07  Score=81.97  Aligned_cols=77  Identities=21%  Similarity=0.270  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------------------------C
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------------------N  116 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------------------~  116 (216)
                      +.|++|+|+|+|.+ |+.++..+...|++|++++++..                                         .
T Consensus       170 l~g~~V~ViGaG~i-G~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          170 VPPAKVMVIGAGVA-GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             ECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            67999999999875 99999999999999999977521                                         1


Q ss_pred             HHhhccCCCEEEEecCCC-----CcccCCc---ccCCcEEEEeeeCC
Q 027976          117 PEQITSEADIVIAAAGVA-----NLVRGSW---LKPGAVVLDVGTCP  155 (216)
Q Consensus       117 l~~~~~~ADIVIsatg~p-----~~i~~~~---i~~g~vViDvg~~~  155 (216)
                      +.+.++++|+||++++.|     ..++.++   +++|.+|+|+++++
T Consensus       249 l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~  295 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQN  295 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGG
T ss_pred             HHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCC
Confidence            456677899999996443     4466555   47899999999864

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.29  E-value=2.1e-06  Score=75.16  Aligned_cols=76  Identities=21%  Similarity=0.291  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHh-CC-CEEEEEeCCCC-------------------CHHhhccCCCEEEEecCCCCc
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALTK-------------------NPEQITSEADIVIAAAGVANL  136 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~-~g-a~Vti~~~~t~-------------------~l~~~~~~ADIVIsatg~p~~  136 (216)
                      -..+++.|||+|.. |+..+..|.. .+ .+|++++|+ +                   ++++.+++|||||++|+.+.+
T Consensus       119 ~~~~~v~iIGaG~~-a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~~p  196 (313)
T 3hdj_A          119 PRSSVLGLFGAGTQ-GAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRSTTP  196 (313)
T ss_dssp             TTCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCSSC
T ss_pred             CCCcEEEEECccHH-HHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCCCc
Confidence            35789999999987 9999988876 34 479999887 2                   334567789999999998765


Q ss_pred             -ccCCcccCCcEEEEeeeCC
Q 027976          137 -VRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       137 -i~~~~i~~g~vViDvg~~~  155 (216)
                       ++.+|+++|+.|+|+|...
T Consensus       197 vl~~~~l~~G~~V~~vGs~~  216 (313)
T 3hdj_A          197 LFAGQALRAGAFVGAIGSSL  216 (313)
T ss_dssp             SSCGGGCCTTCEEEECCCSS
T ss_pred             ccCHHHcCCCcEEEECCCCC
Confidence             6889999999999999763

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.27  E-value=1.2e-05  Score=71.91  Aligned_cols=135  Identities=13%  Similarity=0.128  Sum_probs=88.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCC-C---CcccC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLVRG  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~-p---~~i~~  139 (216)
                      .++.||++.|||.|.+ |+++|..|...|++|+.+++..            .++.+.+++||+|+.+++. +   +++..
T Consensus       172 ~~l~gktvGIIGlG~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~  250 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGDL-GKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGA  250 (365)
T ss_dssp             CCSSSSEEEEECCSHH-HHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCH
T ss_pred             cccCCCEEEEecCCcc-cHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCH
Confidence            4688999999999986 9999999999999999998752            2577889999999999884 2   24555


Q ss_pred             Cc---ccCCcEEEEeeeCCccCCC---CCCCCCCCeE--ecccC--------hHHHhhHcceecccCCcccHHHHHHHHH
Q 027976          140 SW---LKPGAVVLDVGTCPVDVSV---DPSCEYGYRL--MGDVC--------YEEAMRLASVITPVPGGVGPMTVAMLLS  203 (216)
Q Consensus       140 ~~---i~~g~vViDvg~~~~~~~~---~~~~~~~~~l--~GDvd--------~~~~~~~~~~~tpvpgGvGp~T~amLl~  203 (216)
                      +.   +|+++++||++-....++.   +.. .+ +++  .=||-        .+-..-..-.+||=.+|.-.-+...+..
T Consensus       251 ~~l~~mk~gailIN~aRG~~vde~aL~~aL-~~-g~i~aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~  328 (365)
T 4hy3_A          251 EAFSSMRRGAAFILLSRADVVDFDALMAAV-SS-GHIVAASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGD  328 (365)
T ss_dssp             HHHHTSCTTCEEEECSCGGGSCHHHHHHHH-HT-TSSEEEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEECcCCchhCHHHHHHHH-Hc-CCceEEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHH
Confidence            44   5899999999943321000   000 00 000  00110        0011112346788888887777777777


Q ss_pred             HHHHHHHHHh
Q 027976          204 NTLDSAKRAY  213 (216)
Q Consensus       204 n~~~a~~~~~  213 (216)
                      .++...++|+
T Consensus       329 ~~~~ni~~~~  338 (365)
T 4hy3_A          329 MVLEDMDLMD  338 (365)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777666665

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.26  E-value=3.7e-06  Score=74.06  Aligned_cols=81  Identities=20%  Similarity=0.307  Sum_probs=66.3

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCC-C---Cccc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLVR  138 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~-p---~~i~  138 (216)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.            .++.+.+++||+|+.+++. +   +.+.
T Consensus       135 ~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~  213 (324)
T 3hg7_A          135 YQGLKGRTLLILGTGSI-GQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFT  213 (324)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBC
T ss_pred             CcccccceEEEEEECHH-HHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhH
Confidence            35789999999999986 9999999999999999998753            2477889999999999883 3   2455


Q ss_pred             CCc---ccCCcEEEEeeeCCc
Q 027976          139 GSW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       139 ~~~---i~~g~vViDvg~~~~  156 (216)
                      .+.   +++|+++||++-...
T Consensus       214 ~~~l~~mk~gailIN~aRG~~  234 (324)
T 3hg7_A          214 ASRFEHCKPGAILFNVGRGNA  234 (324)
T ss_dssp             TTTTTCSCTTCEEEECSCGGG
T ss_pred             HHHHhcCCCCcEEEECCCchh
Confidence            554   578999999986553

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.26  E-value=1.3e-06  Score=78.53  Aligned_cols=143  Identities=17%  Similarity=0.207  Sum_probs=98.6

Q ss_pred             HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC---------CCCHHhhccCCCEEEEecCC-C----
Q 027976           69 ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------TKNPEQITSEADIVIAAAGV-A----  134 (216)
Q Consensus        69 ~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------t~~l~~~~~~ADIVIsatg~-p----  134 (216)
                      .+.++.+.++.||++.|||.|.+ |+++|..|...|++|..+++.         ..++.+.+++||+|+.+++. +    
T Consensus       108 ~l~r~~g~~l~gktvGIIGlG~I-G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~  186 (381)
T 3oet_A          108 MLAERDGFSLRDRTIGIVGVGNV-GSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPY  186 (381)
T ss_dssp             HHHHHTTCCGGGCEEEEECCSHH-HHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTT
T ss_pred             HHHHhcCCccCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccc
Confidence            34456788999999999999986 999999999999999998653         13688899999999999872 2    


Q ss_pred             ---CcccCCc---ccCCcEEEEeeeCCccCCCCCCC----CCCCeEec---ccCh------HHHhhHcceecccCCcccH
Q 027976          135 ---NLVRGSW---LKPGAVVLDVGTCPVDVSVDPSC----EYGYRLMG---DVCY------EEAMRLASVITPVPGGVGP  195 (216)
Q Consensus       135 ---~~i~~~~---i~~g~vViDvg~~~~~~~~~~~~----~~~~~l~G---Dvd~------~~~~~~~~~~tpvpgGvGp  195 (216)
                         +++..+.   +++|+++||++--...   |...    ...+++.|   ||-.      ....+..-.+||=.+|.-.
T Consensus       187 ~T~~li~~~~l~~mk~gailIN~aRG~vv---de~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~~i~TPHiag~t~  263 (381)
T 3oet_A          187 KTLHLADETLIRRLKPGAILINACRGPVV---DNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGTSHIAGYTL  263 (381)
T ss_dssp             CCTTSBCHHHHHHSCTTEEEEECSCGGGB---CHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHSSEECSSCTTCCH
T ss_pred             cchhhcCHHHHhcCCCCcEEEECCCCccc---CHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCCEEECCccCcCcH
Confidence               2455443   5789999999866542   1000    00012222   5421      1222333467988888877


Q ss_pred             HHHHHHHHHHHHHHHHHhCC
Q 027976          196 MTVAMLLSNTLDSAKRAYGF  215 (216)
Q Consensus       196 ~T~amLl~n~~~a~~~~~~~  215 (216)
                      =+..-....+++...+|++.
T Consensus       264 e~~~~~~~~~~~~l~~~l~~  283 (381)
T 3oet_A          264 EGKARGTTQVFEAYSAFIGR  283 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            77777777777777777763

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.25  E-value=2.3e-06  Score=76.06  Aligned_cols=135  Identities=15%  Similarity=0.158  Sum_probs=91.1

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCC-C---Cccc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLVR  138 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~-p---~~i~  138 (216)
                      +.++.||++.|||.|.+ |+++|..|...|++|..++++.            .++.+.+++||+|+.+++. +   +++.
T Consensus       168 g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~  246 (345)
T 4g2n_A          168 GMGLTGRRLGIFGMGRI-GRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLD  246 (345)
T ss_dssp             BCCCTTCEEEEESCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBC
T ss_pred             ccccCCCEEEEEEeChh-HHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhC
Confidence            35789999999999986 9999999999999999998763            3678899999999999984 2   3465


Q ss_pred             CCc---ccCCcEEEEeeeCCccCCCCCCC----CCCCeEec---ccCh-------HHHhhHcceecccCCcccHHHHHHH
Q 027976          139 GSW---LKPGAVVLDVGTCPVDVSVDPSC----EYGYRLMG---DVCY-------EEAMRLASVITPVPGGVGPMTVAML  201 (216)
Q Consensus       139 ~~~---i~~g~vViDvg~~~~~~~~~~~~----~~~~~l~G---Dvd~-------~~~~~~~~~~tpvpgGvGp~T~amL  201 (216)
                      .+.   +|+++++||++-....   |...    ...+++-|   ||-.       +-..-..-.+||=.+|.-.-+..-+
T Consensus       247 ~~~l~~mk~gailIN~aRG~~v---de~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~  323 (345)
T 4g2n_A          247 HDRIAKIPEGAVVINISRGDLI---NDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAM  323 (345)
T ss_dssp             HHHHHHSCTTEEEEECSCGGGB---CHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCchh---CHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHH
Confidence            544   5899999999865432   1000    00012332   3311       1111123467777788776666666


Q ss_pred             HHHHHHHHHHHh
Q 027976          202 LSNTLDSAKRAY  213 (216)
Q Consensus       202 l~n~~~a~~~~~  213 (216)
                      .+..+...++|+
T Consensus       324 ~~~~~~ni~~~l  335 (345)
T 4g2n_A          324 GWLLIQGIEALN  335 (345)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666666554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.24  E-value=2.1e-05  Score=69.52  Aligned_cols=134  Identities=15%  Similarity=0.083  Sum_probs=91.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCCC----CcccC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA----NLVRG  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~p----~~i~~  139 (216)
                      .++.||++.|||.|.+ |+.+|..|...|++|+.+++..            .++.+.+++||+|+.+++..    +++..
T Consensus       161 ~~l~g~tvgIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  239 (335)
T 2g76_A          161 TELNGKTLGILGLGRI-GREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLND  239 (335)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCH
T ss_pred             cCCCcCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCH
Confidence            5799999999999886 9999999999999999998753            25678899999999999853    23543


Q ss_pred             ---CcccCCcEEEEeeeCCccCCCCCCC----CCCCeEec---cc-------ChHHHhhHcceecccCCcccHHHHHHHH
Q 027976          140 ---SWLKPGAVVLDVGTCPVDVSVDPSC----EYGYRLMG---DV-------CYEEAMRLASVITPVPGGVGPMTVAMLL  202 (216)
Q Consensus       140 ---~~i~~g~vViDvg~~~~~~~~~~~~----~~~~~l~G---Dv-------d~~~~~~~~~~~tpvpgGvGp~T~amLl  202 (216)
                         +.+++++++||++.....   |...    ...+++-|   ||       +.+-.....-.+||-.+|.-.-+..-+.
T Consensus       240 ~~l~~mk~gailIN~arg~vv---d~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~  316 (335)
T 2g76_A          240 NTFAQCKKGVRVVNCARGGIV---DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCG  316 (335)
T ss_dssp             HHHTTSCTTEEEEECSCTTSB---CHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHH
T ss_pred             HHHhhCCCCcEEEECCCcccc---CHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHH
Confidence               346889999999976543   1000    00012322   33       1122222345678888887776666566


Q ss_pred             HHHHHHHHHHh
Q 027976          203 SNTLDSAKRAY  213 (216)
Q Consensus       203 ~n~~~a~~~~~  213 (216)
                      +..++..++|+
T Consensus       317 ~~~~~nl~~~~  327 (335)
T 2g76_A          317 EEIAVQFVDMV  327 (335)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            66666655554

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.21  E-value=2.2e-06  Score=75.54  Aligned_cols=81  Identities=15%  Similarity=0.249  Sum_probs=65.8

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCC-C---Cccc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLVR  138 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~-p---~~i~  138 (216)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.            .++.+.+++||+|+.+++. +   +++.
T Consensus       132 ~~~l~gktvGIiGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~  210 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQI-GQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFS  210 (324)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBS
T ss_pred             CccccCCeEEEECcCHH-HHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcC
Confidence            46799999999999986 9999999999999999998753            1467788999999999884 3   2455


Q ss_pred             CCc---ccCCcEEEEeeeCCc
Q 027976          139 GSW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       139 ~~~---i~~g~vViDvg~~~~  156 (216)
                      .+.   +++|+++||++-...
T Consensus       211 ~~~l~~mk~gailIN~aRG~~  231 (324)
T 3evt_A          211 TELFQQTKQQPMLINIGRGPA  231 (324)
T ss_dssp             HHHHHTCCSCCEEEECSCGGG
T ss_pred             HHHHhcCCCCCEEEEcCCChh
Confidence            443   588999999996543

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.21  E-value=8.4e-06  Score=70.95  Aligned_cols=77  Identities=18%  Similarity=0.308  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhC-CC-EEEEEeCCC-----------------CCHHhhccCCCEEEEecCCCCc-
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALT-----------------KNPEQITSEADIVIAAAGVANL-  136 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t-----------------~~l~~~~~~ADIVIsatg~p~~-  136 (216)
                      ....+++.|||.|.. |++++..|++. |. +|++++|+.                 .++.+.++++|+||++|+.... 
T Consensus       132 ~~~~~~igiIG~G~~-g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~~~v  210 (312)
T 2i99_A          132 PPSSEVLCILGAGVQ-AYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLATEPI  210 (312)
T ss_dssp             CTTCCEEEEECCSHH-HHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCSSCC
T ss_pred             CCCCcEEEEECCcHH-HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCCCcc
Confidence            467889999999986 99999988775 76 799998752                 2456778899999999986544 


Q ss_pred             ccCCcccCCcEEEEeeeC
Q 027976          137 VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       137 i~~~~i~~g~vViDvg~~  154 (216)
                      +..+++++|.+|+|++..
T Consensus       211 ~~~~~l~~g~~vi~~g~~  228 (312)
T 2i99_A          211 LFGEWVKPGAHINAVGAS  228 (312)
T ss_dssp             BCGGGSCTTCEEEECCCC
T ss_pred             cCHHHcCCCcEEEeCCCC
Confidence            566899999999999543

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.21  E-value=2.4e-06  Score=74.97  Aligned_cols=80  Identities=15%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------CHHhhccCCCEEEEecCC-C---CcccC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV-A---NLVRG  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~ADIVIsatg~-p---~~i~~  139 (216)
                      .++.||++.|||.|.+ |+.+|..|...|++|+.++++.+            ++.+.+++||+|+.+++. +   +++..
T Consensus       135 ~~l~g~tvGIiG~G~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~  213 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVL-GAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINS  213 (315)
T ss_dssp             CCSTTCCEEEECCSHH-HHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSH
T ss_pred             CCcCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccH
Confidence            5689999999999986 99999999999999999987632            467889999999999883 2   24554


Q ss_pred             C---cccCCcEEEEeeeCCc
Q 027976          140 S---WLKPGAVVLDVGTCPV  156 (216)
Q Consensus       140 ~---~i~~g~vViDvg~~~~  156 (216)
                      +   .+++++++||++-...
T Consensus       214 ~~l~~mk~gailIN~aRG~~  233 (315)
T 3pp8_A          214 ELLDQLPDGAYVLNLARGVH  233 (315)
T ss_dssp             HHHTTSCTTEEEEECSCGGG
T ss_pred             HHHhhCCCCCEEEECCCChh
Confidence            4   3588999999986543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.21  E-value=1.2e-05  Score=71.62  Aligned_cols=135  Identities=13%  Similarity=0.118  Sum_probs=91.0

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCC-C---Ccc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-A---NLV  137 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~-p---~~i  137 (216)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.             .++.+.+++||+|+.+++. +   +++
T Consensus       155 ~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li  233 (352)
T 3gg9_A          155 GRVLKGQTLGIFGYGKI-GQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSII  233 (352)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             CccCCCCEEEEEeECHH-HHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhh
Confidence            35689999999999986 9999999999999999997641             3688899999999999883 2   245


Q ss_pred             cCC---cccCCcEEEEeeeCCccCCCCCCC----CCCCeEec---ccC--------hHHHhhHcceecccCCcccHHHHH
Q 027976          138 RGS---WLKPGAVVLDVGTCPVDVSVDPSC----EYGYRLMG---DVC--------YEEAMRLASVITPVPGGVGPMTVA  199 (216)
Q Consensus       138 ~~~---~i~~g~vViDvg~~~~~~~~~~~~----~~~~~l~G---Dvd--------~~~~~~~~~~~tpvpgGvGp~T~a  199 (216)
                      ..+   .+++|+++||++-....   |...    ...+++-|   ||-        .+-..-..-.+||=.+|.-.-+..
T Consensus       234 ~~~~l~~mk~gailIN~aRg~~v---d~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~  310 (352)
T 3gg9_A          234 TVADLTRMKPTALFVNTSRAELV---EENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYE  310 (352)
T ss_dssp             CHHHHTTSCTTCEEEECSCGGGB---CTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHH
T ss_pred             CHHHHhhCCCCcEEEECCCchhh---cHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHH
Confidence            443   35899999999954432   1000    00001111   211        111112245678888888877777


Q ss_pred             HHHHHHHHHHHHHh
Q 027976          200 MLLSNTLDSAKRAY  213 (216)
Q Consensus       200 mLl~n~~~a~~~~~  213 (216)
                      .+....++..++|+
T Consensus       311 ~~~~~~~~ni~~~~  324 (352)
T 3gg9_A          311 MYFGIAFQNILDIL  324 (352)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777766665

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.21  E-value=2.1e-06  Score=74.54  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=65.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCC-CC---cccC---
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-AN---LVRG---  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~-p~---~i~~---  139 (216)
                      .++.||++.|||.|.+ |+++|..|...|++|+.++++.         .++.+.+++||+|+.+++. +.   .+..   
T Consensus       118 ~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  196 (290)
T 3gvx_A          118 TLLYGKALGILGYGGI-GRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLL  196 (290)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHH
T ss_pred             eeeecchheeeccCch-hHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHH
Confidence            3589999999999986 9999999999999999998763         3678899999999999984 32   3544   


Q ss_pred             CcccCCcEEEEeeeCC
Q 027976          140 SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       140 ~~i~~g~vViDvg~~~  155 (216)
                      +.+++++++||++...
T Consensus       197 ~~mk~gailIN~aRG~  212 (290)
T 3gvx_A          197 ANARKNLTIVNVARAD  212 (290)
T ss_dssp             TTCCTTCEEEECSCGG
T ss_pred             hhhhcCceEEEeehhc
Confidence            3468999999998654

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.20  E-value=3e-06  Score=75.12  Aligned_cols=135  Identities=21%  Similarity=0.234  Sum_probs=84.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCC-C---CcccCCc-
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A---NLVRGSW-  141 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~-p---~~i~~~~-  141 (216)
                      .++.||++.|||.|.+ |+++|..|...|++|+.++++.         .++.+.+++||+|+.+++. +   +.+..+. 
T Consensus       167 ~~l~gktiGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l  245 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQI-GRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLL  245 (340)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHH
T ss_pred             ccccCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHH
Confidence            5789999999999986 9999999999999999998763         3688899999999999883 2   2354443 


Q ss_pred             --ccCCcEEEEeeeCCccCCC---CCCCCCCCeEec---ccCh-------HHHhhHcceecccCCcccHHHHHHHHHHHH
Q 027976          142 --LKPGAVVLDVGTCPVDVSV---DPSCEYGYRLMG---DVCY-------EEAMRLASVITPVPGGVGPMTVAMLLSNTL  206 (216)
Q Consensus       142 --i~~g~vViDvg~~~~~~~~---~~~~~~~~~l~G---Dvd~-------~~~~~~~~~~tpvpgGvGp~T~amLl~n~~  206 (216)
                        +++++++||++-....++.   +..  ..+++-|   ||-.       +-..-..-.+||=.+|.-.-+..-+....+
T Consensus       246 ~~mk~gailIN~aRG~vvde~aL~~aL--~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~  323 (340)
T 4dgs_A          246 QALGPEGIVVNVARGNVVDEDALIEAL--KSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVL  323 (340)
T ss_dssp             HHTTTTCEEEECSCC----------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEECCCCcccCHHHHHHHH--HcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHHH
Confidence              5889999999866542100   000  0112221   4421       111112346787778877665555555555


Q ss_pred             HHHHHHh
Q 027976          207 DSAKRAY  213 (216)
Q Consensus       207 ~a~~~~~  213 (216)
                      +..++|+
T Consensus       324 ~nl~~~~  330 (340)
T 4dgs_A          324 ANLAAHF  330 (340)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.20  E-value=4e-06  Score=74.96  Aligned_cols=78  Identities=29%  Similarity=0.408  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhccCCCEEEEecCCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~p~  135 (216)
                      .+.|++|+|+|+|++ |+.++..+...|++|++++++..                     ++.+.++++|+||++++.|.
T Consensus       165 ~l~g~~V~ViG~G~i-G~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          165 GVEPADVVVIGAGTA-GYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TBCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCC
Confidence            478999999999875 99999999999999999986521                     23455678999999998664


Q ss_pred             -----cccC---CcccCCcEEEEeeeCC
Q 027976          136 -----LVRG---SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       136 -----~i~~---~~i~~g~vViDvg~~~  155 (216)
                           ++..   +.++++.+++|++..+
T Consensus       244 ~~t~~li~~~~l~~mk~g~~iV~va~~~  271 (377)
T 2vhw_A          244 AKAPKLVSNSLVAHMKPGAVLVDIAIDQ  271 (377)
T ss_dssp             SCCCCCBCHHHHTTSCTTCEEEEGGGGT
T ss_pred             CCCcceecHHHHhcCCCCcEEEEEecCC
Confidence                 2343   3457899999999754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.19  E-value=3.7e-06  Score=78.06  Aligned_cols=82  Identities=22%  Similarity=0.310  Sum_probs=67.7

Q ss_pred             hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCCcccC-
Q 027976           74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRG-  139 (216)
Q Consensus        74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~~i~~-  139 (216)
                      .+..+.|++|+|+|.|.+ |+.+++.|...|++|++++++.             .++.+.++++|+||.++|.++.+.. 
T Consensus       268 ~~~~l~GktV~IiG~G~I-G~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atgt~~~i~~~  346 (494)
T 3ce6_A          268 TDALIGGKKVLICGYGDV-GKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLE  346 (494)
T ss_dssp             HCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSSSSCSBCHH
T ss_pred             cCCCCCcCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCCCHHHHHHH
Confidence            345789999999999875 9999999999999999997753             2456778899999999998887764 


Q ss_pred             --CcccCCcEEEEeeeCCc
Q 027976          140 --SWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       140 --~~i~~g~vViDvg~~~~  156 (216)
                        +.++++.++++++....
T Consensus       347 ~l~~mk~ggilvnvG~~~~  365 (494)
T 3ce6_A          347 HIKAMKDHAILGNIGHFDN  365 (494)
T ss_dssp             HHHHSCTTCEEEECSSSGG
T ss_pred             HHHhcCCCcEEEEeCCCCC
Confidence              34689999999997643

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.18  E-value=6.5e-06  Score=72.11  Aligned_cols=77  Identities=16%  Similarity=0.241  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHh-CC-CEEEEEeCCC-------------------CCHHhhccCCCEEEEecCCCCc
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT-------------------KNPEQITSEADIVIAAAGVANL  136 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~-~g-a~Vti~~~~t-------------------~~l~~~~~~ADIVIsatg~p~~  136 (216)
                      ...+++.|||+|.. |+..+..|+. .+ .+|++++|+.                   .++++.+ ++|+||++|+...+
T Consensus       123 ~~~~~v~iIGaG~~-a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~p  200 (322)
T 1omo_A          123 KNSSVFGFIGCGTQ-AYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRKP  200 (322)
T ss_dssp             TTCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSSC
T ss_pred             CCCCEEEEEcCcHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCCc
Confidence            46789999999987 9999988876 34 4699998862                   2345667 89999999997665


Q ss_pred             -ccCCcccCCcEEEEee-eCCc
Q 027976          137 -VRGSWLKPGAVVLDVG-TCPV  156 (216)
Q Consensus       137 -i~~~~i~~g~vViDvg-~~~~  156 (216)
                       ++.+|+++|..|+|++ |.|.
T Consensus       201 v~~~~~l~~G~~V~~ig~~~p~  222 (322)
T 1omo_A          201 VVKAEWVEEGTHINAIGADGPG  222 (322)
T ss_dssp             CBCGGGCCTTCEEEECSCCSTT
T ss_pred             eecHHHcCCCeEEEECCCCCCC
Confidence             6778999999999995 5554

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.16  E-value=2.8e-06  Score=75.41  Aligned_cols=135  Identities=17%  Similarity=0.117  Sum_probs=90.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------CHHhhccCCCEEEEecCC-C---CcccCCc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITSEADIVIAAAGV-A---NLVRGSW  141 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~l~~~~~~ADIVIsatg~-p---~~i~~~~  141 (216)
                      .++.||++.|||.|.+ |+++|..|...|++|+.++++.+          ++.+.+++||+|+.+++. +   +.+..+.
T Consensus       144 ~~l~gktvgIiGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~  222 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHI-GSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQ  222 (343)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHH
T ss_pred             cccCCCeEEEEecCHH-HHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHH
Confidence            3678999999999986 99999999999999999987632          577889999999999984 2   2455544


Q ss_pred             ---ccCCcEEEEeeeCCccCCC---CCCCCCCCeE---ecccChHH--------------------H-hhHcceecccCC
Q 027976          142 ---LKPGAVVLDVGTCPVDVSV---DPSCEYGYRL---MGDVCYEE--------------------A-MRLASVITPVPG  191 (216)
Q Consensus       142 ---i~~g~vViDvg~~~~~~~~---~~~~~~~~~l---~GDvd~~~--------------------~-~~~~~~~tpvpg  191 (216)
                         +++|+++||++-....++.   +.. .+ +++   .=||-..+                    . ....-.+||=.+
T Consensus       223 l~~mk~gailIN~aRg~~vd~~aL~~aL-~~-g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia  300 (343)
T 2yq5_A          223 LKEMKKSAYLINCARGELVDTGALIKAL-QD-GEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSA  300 (343)
T ss_dssp             HHHSCTTCEEEECSCGGGBCHHHHHHHH-HH-TSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCT
T ss_pred             HhhCCCCcEEEECCCChhhhHHHHHHHH-Hc-CCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccc
Confidence               5899999999965432000   000 00 011   11332111                    1 112345787778


Q ss_pred             cccHHHHHHHHHHHHHHHHHHh
Q 027976          192 GVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       192 GvGp~T~amLl~n~~~a~~~~~  213 (216)
                      |.-.-+..-+.+..+...++|+
T Consensus       301 ~~t~ea~~~~~~~~~~ni~~~l  322 (343)
T 2yq5_A          301 FYTETSIRNMVQICLTDQLTIA  322 (343)
T ss_dssp             TCBHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHH
Confidence            8777776666776766666654

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.16  E-value=5.4e-06  Score=72.67  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=64.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC-CC-------------CCHHhhccCCCEEEEecCC-C---Ccc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA-LT-------------KNPEQITSEADIVIAAAGV-A---NLV  137 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~-~t-------------~~l~~~~~~ADIVIsatg~-p---~~i  137 (216)
                      .++.|+++.|||.|.+ |+++|..|...|++|+++++ +.             .++.+.+++||+|+.+++. +   +.+
T Consensus       142 ~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i  220 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSI-GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF  220 (320)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhc
Confidence            3689999999999986 99999999999999999988 43             1567888899999999984 3   235


Q ss_pred             cC---CcccCCcEEEEeeeCC
Q 027976          138 RG---SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       138 ~~---~~i~~g~vViDvg~~~  155 (216)
                      ..   +.+++++++||++...
T Consensus       221 ~~~~l~~mk~gailIn~arg~  241 (320)
T 1gdh_A          221 NKATIKSLPQGAIVVNTARGD  241 (320)
T ss_dssp             SHHHHTTSCTTEEEEECSCGG
T ss_pred             CHHHHhhCCCCcEEEECCCCc
Confidence            44   4578999999998764

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.16  E-value=5.1e-06  Score=73.91  Aligned_cols=81  Identities=14%  Similarity=0.274  Sum_probs=66.8

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCC-CC---c
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-AN---L  136 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~-p~---~  136 (216)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.              .++.+.+++||+|+.+++. +.   +
T Consensus       159 ~~~l~gktvGIIG~G~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~l  237 (351)
T 3jtm_A          159 AYDLEGKTIGTVGAGRI-GKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGM  237 (351)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTC
T ss_pred             cccccCCEEeEEEeCHH-HHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHh
Confidence            46799999999999986 9999999999999999998752              3678899999999999984 32   4


Q ss_pred             ccCCc---ccCCcEEEEeeeCCc
Q 027976          137 VRGSW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       137 i~~~~---i~~g~vViDvg~~~~  156 (216)
                      +..+.   +++++++||++-...
T Consensus       238 i~~~~l~~mk~gailIN~aRG~~  260 (351)
T 3jtm_A          238 FNKELIGKLKKGVLIVNNARGAI  260 (351)
T ss_dssp             BSHHHHHHSCTTEEEEECSCGGG
T ss_pred             hcHHHHhcCCCCCEEEECcCchh
Confidence            55544   588999999986553

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.16  E-value=3.2e-06  Score=74.55  Aligned_cols=135  Identities=21%  Similarity=0.206  Sum_probs=90.0

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCC-C---Ccc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-A---NLV  137 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~-p---~~i  137 (216)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.             .++.+.+++||+|+.+++. +   +++
T Consensus       140 ~~~l~g~tvGIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li  218 (330)
T 4e5n_A          140 GTGLDNATVGFLGMGAI-GLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLV  218 (330)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             CCccCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHh
Confidence            34689999999999986 9999999999999999998764             2467888999999999884 2   245


Q ss_pred             cCC---cccCCcEEEEeeeCCccCCCCCCC----CCCCeEe---cccChHH---------------HhhHcceecccCCc
Q 027976          138 RGS---WLKPGAVVLDVGTCPVDVSVDPSC----EYGYRLM---GDVCYEE---------------AMRLASVITPVPGG  192 (216)
Q Consensus       138 ~~~---~i~~g~vViDvg~~~~~~~~~~~~----~~~~~l~---GDvd~~~---------------~~~~~~~~tpvpgG  192 (216)
                      ..+   .+++++++||++-....   |...    ...+++-   =||-..+               ..-..-.+||=.+|
T Consensus       219 ~~~~l~~mk~gailIN~arg~~v---d~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~  295 (330)
T 4e5n_A          219 NAELLALVRPGALLVNPCRGSVV---DEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS  295 (330)
T ss_dssp             CHHHHTTSCTTEEEEECSCGGGB---CHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTT
T ss_pred             CHHHHhhCCCCcEEEECCCCchh---CHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCC
Confidence            544   35889999999865432   1000    0001121   1332211               11124567888788


Q ss_pred             ccHHHHHHHHHHHHHHHHHHh
Q 027976          193 VGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       193 vGp~T~amLl~n~~~a~~~~~  213 (216)
                      .-.-+...+.+..+...++|+
T Consensus       296 ~t~e~~~~~~~~~~~ni~~~~  316 (330)
T 4e5n_A          296 AVRAVRLEIERCAAQNILQAL  316 (330)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHH
Confidence            776666666666666666554

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.15  E-value=5.6e-06  Score=72.13  Aligned_cols=79  Identities=25%  Similarity=0.312  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------CCHHhhccCCCEEEEecCCC----CcccC---Cc
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------KNPEQITSEADIVIAAAGVA----NLVRG---SW  141 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------~~l~~~~~~ADIVIsatg~p----~~i~~---~~  141 (216)
                      ++.|+++.|||.|.+ |+++|..|...|++|+.++++.        .++.+.+++||+|+.+++..    +++..   +.
T Consensus       121 ~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~  199 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEI-GTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL  199 (303)
T ss_dssp             CCTTCEEEEESCSTH-HHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             CCCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCccccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhh
Confidence            689999999999986 9999999999999999988753        25778899999999999843    23543   34


Q ss_pred             ccCCcEEEEeeeCCc
Q 027976          142 LKPGAVVLDVGTCPV  156 (216)
Q Consensus       142 i~~g~vViDvg~~~~  156 (216)
                      +++++++||++....
T Consensus       200 mk~gailin~srg~~  214 (303)
T 1qp8_A          200 MAEDAVFVNVGRAEV  214 (303)
T ss_dssp             SCTTCEEEECSCGGG
T ss_pred             CCCCCEEEECCCCcc
Confidence            688999999987653

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.14  E-value=3.6e-06  Score=74.14  Aligned_cols=79  Identities=19%  Similarity=0.242  Sum_probs=64.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------CHHhhccCCCEEEEecCCC----CcccCC-
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITSEADIVIAAAGVA----NLVRGS-  140 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~l~~~~~~ADIVIsatg~p----~~i~~~-  140 (216)
                      .++.|+++.|||.|.+ |+.+|..|...|++|++++++..          ++.+.+++||+|+.+++..    +++..+ 
T Consensus       142 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~  220 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRI-GRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDF  220 (331)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHH
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHH
Confidence            4588999999999986 99999999999999999987532          4678889999999988742    345433 


Q ss_pred             --cccCCcEEEEeeeCC
Q 027976          141 --WLKPGAVVLDVGTCP  155 (216)
Q Consensus       141 --~i~~g~vViDvg~~~  155 (216)
                        .+++++++||++...
T Consensus       221 l~~mk~ga~lin~srg~  237 (331)
T 1xdw_A          221 LKKMKDGAILVNCARGQ  237 (331)
T ss_dssp             HHTSCTTEEEEECSCGG
T ss_pred             HhhCCCCcEEEECCCcc
Confidence              358899999999654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.14  E-value=4.6e-06  Score=72.88  Aligned_cols=134  Identities=15%  Similarity=0.171  Sum_probs=89.2

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------CHHhhccCCCEEEEecCC-C---Cccc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV-A---NLVR  138 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~ADIVIsatg~-p---~~i~  138 (216)
                      +.++.|+++.|||.|.+ |+++|..|...|++|++++++.+            ++.+.+++||+|+.+++. +   +++.
T Consensus       137 ~~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~  215 (313)
T 2ekl_A          137 GLELAGKTIGIVGFGRI-GTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIID  215 (313)
T ss_dssp             CCCCTTCEEEEESCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBC
T ss_pred             CCCCCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhC
Confidence            35799999999999986 99999999999999999987642            466788899999999984 2   2354


Q ss_pred             CC---cccCCcEEEEeeeCCccCCCCCCC----CCCCeEec---cc-------Ch---HHHhhHcceecccCCcccHHHH
Q 027976          139 GS---WLKPGAVVLDVGTCPVDVSVDPSC----EYGYRLMG---DV-------CY---EEAMRLASVITPVPGGVGPMTV  198 (216)
Q Consensus       139 ~~---~i~~g~vViDvg~~~~~~~~~~~~----~~~~~l~G---Dv-------d~---~~~~~~~~~~tpvpgGvGp~T~  198 (216)
                      .+   .+++++++||++.....   |...    ...+++-|   ||       |.   +-.....-.+||-.+|.-.-+.
T Consensus       216 ~~~l~~mk~ga~lIn~arg~~v---d~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~  292 (313)
T 2ekl_A          216 YPQFELMKDNVIIVNTSRAVAV---NGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQ  292 (313)
T ss_dssp             HHHHHHSCTTEEEEESSCGGGB---CHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHH
T ss_pred             HHHHhcCCCCCEEEECCCCccc---CHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHH
Confidence            33   36899999999876543   1000    00012311   33       21   1122234577888888766665


Q ss_pred             HHHHHHHHHHHHHH
Q 027976          199 AMLLSNTLDSAKRA  212 (216)
Q Consensus       199 amLl~n~~~a~~~~  212 (216)
                      ..+....++..++|
T Consensus       293 ~~~~~~~~~n~~~~  306 (313)
T 2ekl_A          293 KRVAEMTTQNLLNA  306 (313)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555555544

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.14  E-value=4.6e-06  Score=72.88  Aligned_cols=136  Identities=19%  Similarity=0.186  Sum_probs=89.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------CCHHhhccCCCEEEEecCCC----CcccC---Cc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------KNPEQITSEADIVIAAAGVA----NLVRG---SW  141 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------~~l~~~~~~ADIVIsatg~p----~~i~~---~~  141 (216)
                      .++.|+++.|||.|.+ |+.+|..|...|++|+.++++.       .++.+.+++||+|+.+++..    +++..   ..
T Consensus       140 ~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~  218 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRI-GQAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFA  218 (311)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTT
T ss_pred             cCCCCCEEEEEEECHH-HHHHHHHHHHCCCEEEEECCCCcccccccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhh
Confidence            4689999999999986 9999999999999999998764       25778899999999998743    23543   34


Q ss_pred             ccCCcEEEEeeeCCccCCCC-CCCCCCCeEec---ccC--------hHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976          142 LKPGAVVLDVGTCPVDVSVD-PSCEYGYRLMG---DVC--------YEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       142 i~~g~vViDvg~~~~~~~~~-~~~~~~~~l~G---Dvd--------~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      +++++++||++.....++.+ ..... +++-|   ||-        .+-.....-.+||-.+|.-.-+..-+.+..++..
T Consensus       219 mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl  297 (311)
T 2cuk_A          219 MKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENL  297 (311)
T ss_dssp             SCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHH
Confidence            68899999999765431000 00000 11111   221        1112223556788888877666555666666655


Q ss_pred             HHHh
Q 027976          210 KRAY  213 (216)
Q Consensus       210 ~~~~  213 (216)
                      ++|+
T Consensus       298 ~~~~  301 (311)
T 2cuk_A          298 LAVL  301 (311)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.13  E-value=5e-06  Score=74.77  Aligned_cols=142  Identities=18%  Similarity=0.158  Sum_probs=95.0

Q ss_pred             HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC---------CCCHHhhccCCCEEEEecCC-C----
Q 027976           69 ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------TKNPEQITSEADIVIAAAGV-A----  134 (216)
Q Consensus        69 ~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------t~~l~~~~~~ADIVIsatg~-p----  134 (216)
                      .+.++.+.++.|+++.|||.|.+ |+.+|..|...|++|+.+++.         ..++.+.+++||+|+.+++. +    
T Consensus       105 ~l~r~~~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~  183 (380)
T 2o4c_A          105 AMAEVRGADLAERTYGVVGAGQV-GGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEH  183 (380)
T ss_dssp             HHHHHHTCCGGGCEEEEECCSHH-HHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSS
T ss_pred             HHHhhhhcccCCCEEEEEeCCHH-HHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCcccccc
Confidence            34455678999999999999886 999999999999999998642         13578889999999998873 2    


Q ss_pred             ---CcccCC---cccCCcEEEEeeeCCccCCCCCCC-----CCCC--eEecccCh------HHHhhHcceecccCCcccH
Q 027976          135 ---NLVRGS---WLKPGAVVLDVGTCPVDVSVDPSC-----EYGY--RLMGDVCY------EEAMRLASVITPVPGGVGP  195 (216)
Q Consensus       135 ---~~i~~~---~i~~g~vViDvg~~~~~~~~~~~~-----~~~~--~l~GDvd~------~~~~~~~~~~tpvpgGvGp  195 (216)
                         +++..+   .+++|+++||++.....   |...     .++.  ...=||-.      ....+..-.+||=.+|.-.
T Consensus       184 ~T~~li~~~~l~~mk~gailIN~sRG~vv---d~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~~nvi~TPHiag~t~  260 (380)
T 2o4c_A          184 PTRHLLDEPRLAALRPGTWLVNASRGAVV---DNQALRRLLEGGADLEVALDVWEGEPQADPELAARCLIATPHIAGYSL  260 (380)
T ss_dssp             CCTTSBCHHHHHTSCTTEEEEECSCGGGB---CHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHTTCSEECSSCTTCCH
T ss_pred             chhhhcCHHHHhhCCCCcEEEECCCCccc---CHHHHHHHHHhCCCceEEeeeeccCCCCchhhccCCEEEccccCcCCH
Confidence               234443   35789999999976543   1100     0010  11223311      1122233467888888877


Q ss_pred             HHHHHHHHHHHHHHHHHhC
Q 027976          196 MTVAMLLSNTLDSAKRAYG  214 (216)
Q Consensus       196 ~T~amLl~n~~~a~~~~~~  214 (216)
                      -+..-..++.+...++|++
T Consensus       261 e~~~~~~~~~~~nl~~~l~  279 (380)
T 2o4c_A          261 EGKLRGTAQIYQAYCAWRG  279 (380)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            7666666666666666653

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.12  E-value=5.2e-06  Score=72.39  Aligned_cols=134  Identities=17%  Similarity=0.189  Sum_probs=90.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------CHHhhccCCCEEEEecCC-C---CcccC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV-A---NLVRG  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~ADIVIsatg~-p---~~i~~  139 (216)
                      .++.|+++.|||.|.+ |+++|..|...|++|+.++++.+            ++.+.+++||+|+.+++. +   +++..
T Consensus       138 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~  216 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRI-GYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINE  216 (307)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCH
T ss_pred             cccCCceEEEEccCHH-HHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCH
Confidence            4789999999999986 99999999999999999987642            466788899999999984 3   23544


Q ss_pred             C---cccCCcEEEEeeeCCccCCCCCCC----CCCCeEe---ccc--------ChHHHhhHcceecccCCcccHHHHHHH
Q 027976          140 S---WLKPGAVVLDVGTCPVDVSVDPSC----EYGYRLM---GDV--------CYEEAMRLASVITPVPGGVGPMTVAML  201 (216)
Q Consensus       140 ~---~i~~g~vViDvg~~~~~~~~~~~~----~~~~~l~---GDv--------d~~~~~~~~~~~tpvpgGvGp~T~amL  201 (216)
                      +   .+++++++||++.....   |...    ...+++-   -||        |.+-.....-.+||-.+|.-.-+..-+
T Consensus       217 ~~l~~mk~ga~lin~arg~~v---d~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~  293 (307)
T 1wwk_A          217 ERLKLMKKTAILINTSRGPVV---DTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERA  293 (307)
T ss_dssp             HHHHHSCTTCEEEECSCGGGB---CHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHH
T ss_pred             HHHhcCCCCeEEEECCCCccc---CHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHH
Confidence            3   36899999999876542   1000    0000111   122        111122234577888888777666666


Q ss_pred             HHHHHHHHHHHh
Q 027976          202 LSNTLDSAKRAY  213 (216)
Q Consensus       202 l~n~~~a~~~~~  213 (216)
                      .+..++..++|+
T Consensus       294 ~~~~~~nl~~~~  305 (307)
T 1wwk_A          294 GVEVAEKVVKIL  305 (307)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666666654

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.11  E-value=8.3e-06  Score=72.80  Aligned_cols=81  Identities=25%  Similarity=0.322  Sum_probs=66.4

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCC--------------CCHHhhccCCCEEEEecCCC----C
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT--------------KNPEQITSEADIVIAAAGVA----N  135 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p----~  135 (216)
                      +.++.|+++.|||.|.+ |+++|..|...|++ |+.++++.              .++.+.+++||+|+.+++..    +
T Consensus       159 ~~~l~g~tvgIIG~G~I-G~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~  237 (364)
T 2j6i_A          159 AYDIEGKTIATIGAGRI-GYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKG  237 (364)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTT
T ss_pred             cccCCCCEEEEECcCHH-HHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHH
Confidence            45799999999999986 99999999999997 99998653              25778899999999999853    3


Q ss_pred             cccC---CcccCCcEEEEeeeCCc
Q 027976          136 LVRG---SWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       136 ~i~~---~~i~~g~vViDvg~~~~  156 (216)
                      .+..   +.+++++++||++....
T Consensus       238 li~~~~l~~mk~ga~lIn~arG~~  261 (364)
T 2j6i_A          238 LINKELLSKFKKGAWLVNTARGAI  261 (364)
T ss_dssp             CBCHHHHTTSCTTEEEEECSCGGG
T ss_pred             HhCHHHHhhCCCCCEEEECCCCch
Confidence            4544   34688999999997654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.11  E-value=1.3e-05  Score=71.25  Aligned_cols=90  Identities=11%  Similarity=0.139  Sum_probs=67.7

Q ss_pred             CcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh-CC-CEEEEEeCCC---------------------CCHH
Q 027976           62 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT---------------------KNPE  118 (216)
Q Consensus        62 ~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~-~g-a~Vti~~~~t---------------------~~l~  118 (216)
                      +.+.+++.....  .....+++.|||+|.. |+..+..|.. .+ .+|++++|+.                     .+++
T Consensus       113 Taa~s~laa~~l--a~~~~~~v~iIGaG~~-a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~  189 (350)
T 1x7d_A          113 TAATSLMAAQAL--ARPNARKMALIGNGAQ-SEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVA  189 (350)
T ss_dssp             HHHHHHHHHHHH--SCTTCCEEEEECCSTT-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHH
T ss_pred             hhHHHHHHHHHh--ccccCCeEEEECCcHH-HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHH
Confidence            444556655522  2357889999999987 9998877643 44 4799998761                     2456


Q ss_pred             hhccCCCEEEEecCCCC---cccCCcccCCcEEEEeeeC
Q 027976          119 QITSEADIVIAAAGVAN---LVRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       119 ~~~~~ADIVIsatg~p~---~i~~~~i~~g~vViDvg~~  154 (216)
                      +.+++||+||++|+.+.   .+..+|+++|..|++++..
T Consensus       190 eav~~aDiVi~aTps~~~~pvl~~~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          190 EAVKGVDIITTVTADKAYATIITPDMLEPGMHLNAVGGD  228 (350)
T ss_dssp             HHHTTCSEEEECCCCSSEEEEECGGGCCTTCEEEECSCC
T ss_pred             HHHhcCCEEEEeccCCCCCceecHHHcCCCCEEEECCCC
Confidence            77889999999999762   3678999999999999864

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.08  E-value=1.7e-06  Score=78.20  Aligned_cols=77  Identities=19%  Similarity=0.139  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCCC---CCHHhhccCCCEEEEecCC----CCcccCCcc----cC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---KNPEQITSEADIVIAAAGV----ANLVRGSWL----KP  144 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t---~~l~~~~~~ADIVIsatg~----p~~i~~~~i----~~  144 (216)
                      ...+|+|||+.|.||+.++..+...|+   .|++.+++.   ....+.++++||||+++-.    |.+|+.+++    ++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~~~~i~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~  292 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPFDEIPQADIFINCIYLSKPIAPFTNMEKLNNPNRR  292 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSCCTHHHHSSEEEECCCCCSSCCCSCCHHHHCCTTCC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCchhhHhhCCEEEECcCcCCCCCcccCHHHHhcCcCC
Confidence            467899999955679999999999998   899997642   1113567899999999974    767888876    67


Q ss_pred             CcEEEEeeeCC
Q 027976          145 GAVVLDVGTCP  155 (216)
Q Consensus       145 g~vViDvg~~~  155 (216)
                      +.+|+|++..+
T Consensus       293 gsVIVDVA~D~  303 (394)
T 2qrj_A          293 LRTVVDVSADT  303 (394)
T ss_dssp             CCEEEETTCCT
T ss_pred             CeEEEEEecCC
Confidence            89999998765

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.07  E-value=5.6e-06  Score=73.01  Aligned_cols=80  Identities=19%  Similarity=0.288  Sum_probs=65.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------CHHhhccCCCEEEEecCCC----CcccCC-
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITSEADIVIAAAGVA----NLVRGS-  140 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~l~~~~~~ADIVIsatg~p----~~i~~~-  140 (216)
                      .++.|+++.|||.|.+ |+.+|..|...|++|+.++++..          ++.+.+++||+|+.+++..    +++..+ 
T Consensus       141 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~  219 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHI-GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAA  219 (333)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHH
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHH
Confidence            5789999999999986 99999999999999999877532          4778889999999998843    245443 


Q ss_pred             --cccCCcEEEEeeeCCc
Q 027976          141 --WLKPGAVVLDVGTCPV  156 (216)
Q Consensus       141 --~i~~g~vViDvg~~~~  156 (216)
                        .+++|+++||++....
T Consensus       220 l~~mk~ga~lIn~srg~~  237 (333)
T 1dxy_A          220 FNLMKPGAIVINTARPNL  237 (333)
T ss_dssp             HHHSCTTEEEEECSCTTS
T ss_pred             HhhCCCCcEEEECCCCcc
Confidence              3589999999997654

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.06  E-value=8.7e-06  Score=71.85  Aligned_cols=80  Identities=21%  Similarity=0.387  Sum_probs=65.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCCC----CcccCC--
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGVA----NLVRGS--  140 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~p----~~i~~~--  140 (216)
                      .++.|+++.|||.|.+ |+++|..|...|++|++++++.         .++.+.+++||+|+.+++..    +.+..+  
T Consensus       160 ~~l~g~~vgIIG~G~i-G~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l  238 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRI-GLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVI  238 (333)
T ss_dssp             CCCTTCCEEEECCSHH-HHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHH
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHH
Confidence            4789999999999886 9999999999999999998753         25778899999999999852    235433  


Q ss_pred             -cccCCcEEEEeeeCCc
Q 027976          141 -WLKPGAVVLDVGTCPV  156 (216)
Q Consensus       141 -~i~~g~vViDvg~~~~  156 (216)
                       .+++++++||++....
T Consensus       239 ~~mk~gailIn~srG~~  255 (333)
T 3ba1_A          239 DALGPKGVLINIGRGPH  255 (333)
T ss_dssp             HHHCTTCEEEECSCGGG
T ss_pred             hcCCCCCEEEECCCCch
Confidence             3578999999986643

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.05  E-value=3.2e-06  Score=74.89  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=74.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------CCHHhhccCCCEEEEecCCC-
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQITSEADIVIAAAGVA-  134 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~p-  134 (216)
                      ++-+..||+|+|+|. +|++++..|++ ..+|+++.+..                    +.+.+.++++|+||+++|.- 
T Consensus        12 ~~g~~mkilvlGaG~-vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~   89 (365)
T 3abi_A           12 IEGRHMKVLILGAGN-IGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFL   89 (365)
T ss_dssp             ----CCEEEEECCSH-HHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGG
T ss_pred             ccCCccEEEEECCCH-HHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcc
Confidence            333445799999966 59999998875 46888886541                    23667889999999999742 


Q ss_pred             Cc-ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCC-cccHHHHHHHHHHHHHH
Q 027976          135 NL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPG-GVGPMTVAMLLSNTLDS  208 (216)
Q Consensus       135 ~~-i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpg-GvGp~T~amLl~n~~~a  208 (216)
                      +. +-...++.|.-++|+.+.+.+     .    ..+      .+.+++++... +++ |+-|=-..|+...++..
T Consensus        90 ~~~v~~~~~~~g~~yvD~s~~~~~-----~----~~l------~~~a~~~g~~~-i~~~G~~PG~~~~~a~~~~~~  149 (365)
T 3abi_A           90 GFKSIKAAIKSKVDMVDVSFMPEN-----P----LEL------RDEAEKAQVTI-VFDAGFAPGLSNILMGRIFQE  149 (365)
T ss_dssp             HHHHHHHHHHHTCEEEECCCCSSC-----G----GGG------HHHHHHTTCEE-ECCCBTTTBHHHHHHHHHHHH
T ss_pred             cchHHHHHHhcCcceEeeeccchh-----h----hhh------hhhhccCCcee-eecCCCCCchHHHHHHHHHHh
Confidence            22 444556778999999987543     0    112      23335555432 332 67777777777666543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.04  E-value=6.3e-06  Score=72.61  Aligned_cols=80  Identities=16%  Similarity=0.281  Sum_probs=64.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------CHHhhccCCCEEEEecCC-C---CcccCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------NPEQITSEADIVIAAAGV-A---NLVRGS  140 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------~l~~~~~~ADIVIsatg~-p---~~i~~~  140 (216)
                      .++.|+++.|||.|.+ |+++|..|...|++|+.+++..+           ++.+.+++||+|+.+++. +   +++..+
T Consensus       142 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~  220 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHI-GQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDE  220 (333)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHH
T ss_pred             ccCCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHH
Confidence            4688999999999986 99999999999999999987532           577888899999999984 2   235433


Q ss_pred             ---cccCCcEEEEeeeCCc
Q 027976          141 ---WLKPGAVVLDVGTCPV  156 (216)
Q Consensus       141 ---~i~~g~vViDvg~~~~  156 (216)
                         .+++++++||++....
T Consensus       221 ~l~~mk~ga~lIn~arg~~  239 (333)
T 1j4a_A          221 SIAKMKQDVVIVNVSRGPL  239 (333)
T ss_dssp             HHHHSCTTEEEEECSCGGG
T ss_pred             HHhhCCCCcEEEECCCCcc
Confidence               3688999999987653

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.03  E-value=1.2e-05  Score=71.34  Aligned_cols=136  Identities=17%  Similarity=0.142  Sum_probs=89.0

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHH-hCCCEEEEEeCCCC--------------CHHhhccCCCEEEEecCCC----C
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALTK--------------NPEQITSEADIVIAAAGVA----N  135 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~-~~ga~Vti~~~~t~--------------~l~~~~~~ADIVIsatg~p----~  135 (216)
                      +.++.|+++.|||.|.+ |+++|..|. ..|++|+.++++..              ++.+.+++||+|+.+++..    +
T Consensus       158 ~~~l~g~~vgIIG~G~I-G~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~  236 (348)
T 2w2k_A          158 AHNPRGHVLGAVGLGAI-QKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHH  236 (348)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTT
T ss_pred             CcCCCCCEEEEEEECHH-HHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHH
Confidence            46799999999999886 999999999 99999999987532              5667788999999999853    2


Q ss_pred             cccC---CcccCCcEEEEeeeCCccCCC---CCCCCCCCeEec---ccChH------HHhh-HcceecccCCcccHHHHH
Q 027976          136 LVRG---SWLKPGAVVLDVGTCPVDVSV---DPSCEYGYRLMG---DVCYE------EAMR-LASVITPVPGGVGPMTVA  199 (216)
Q Consensus       136 ~i~~---~~i~~g~vViDvg~~~~~~~~---~~~~~~~~~l~G---Dvd~~------~~~~-~~~~~tpvpgGvGp~T~a  199 (216)
                      .+..   ..+++++++||++.....+..   +.. .+ +++.|   ||-..      ...+ ..-.+||-.+|.-.-+..
T Consensus       237 li~~~~l~~mk~gailin~srg~~vd~~aL~~aL-~~-~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~  314 (348)
T 2w2k_A          237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAAL-KS-GKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFH  314 (348)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH-HT-TSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHH
T ss_pred             HhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHH-Hh-CCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHH
Confidence            3543   346889999999876432000   000 01 13322   33211      1212 234667777887766665


Q ss_pred             HHHHHHHHHHHHHh
Q 027976          200 MLLSNTLDSAKRAY  213 (216)
Q Consensus       200 mLl~n~~~a~~~~~  213 (216)
                      -+....+...++|+
T Consensus       315 ~~~~~~~~ni~~~~  328 (348)
T 2w2k_A          315 EFERLTMTNIDRFL  328 (348)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555555553

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.02  E-value=1.2e-05  Score=70.66  Aligned_cols=133  Identities=19%  Similarity=0.186  Sum_probs=87.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------CHHhhccCCCEEEEecCCCC----cccC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGVAN----LVRG  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~ADIVIsatg~p~----~i~~  139 (216)
                      .++.|+++.|||.|.+ |+++|..|...|++|+.++++.+            ++.+.+++||+||.+++...    .+..
T Consensus       146 ~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~  224 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRI-GQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINE  224 (334)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCH
T ss_pred             cCCCCCEEEEEccCHH-HHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCH
Confidence            4789999999999886 99999999999999999987642            46677889999999998542    3442


Q ss_pred             ---CcccCCcEEEEeeeCCccCCCCCCC-----CCCCeEec---ccCh-------HHHhhHcceecccCCcccHHHHHHH
Q 027976          140 ---SWLKPGAVVLDVGTCPVDVSVDPSC-----EYGYRLMG---DVCY-------EEAMRLASVITPVPGGVGPMTVAML  201 (216)
Q Consensus       140 ---~~i~~g~vViDvg~~~~~~~~~~~~-----~~~~~l~G---Dvd~-------~~~~~~~~~~tpvpgGvGp~T~amL  201 (216)
                         +.+++++++||++.....   +...     .+ +++-|   ||-.       +-.....-.+||-.+|.-.-+..-+
T Consensus       225 ~~~~~mk~~ailIn~srg~~v---~~~aL~~aL~~-~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~  300 (334)
T 2dbq_A          225 ERLKLMKKTAILINIARGKVV---DTNALVKALKE-GWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGM  300 (334)
T ss_dssp             HHHHHSCTTCEEEECSCGGGB---CHHHHHHHHHH-TSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHH
T ss_pred             HHHhcCCCCcEEEECCCCccc---CHHHHHHHHHh-CCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHHHH
Confidence               346889999999865432   1000     00 12211   3311       1122224566777777766665666


Q ss_pred             HHHHHHHHHHHh
Q 027976          202 LSNTLDSAKRAY  213 (216)
Q Consensus       202 l~n~~~a~~~~~  213 (216)
                      ....+...++|+
T Consensus       301 ~~~~~~n~~~~~  312 (334)
T 2dbq_A          301 AELVAKNLIAFK  312 (334)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666655554

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.02  E-value=9.5e-06  Score=72.02  Aligned_cols=135  Identities=16%  Similarity=0.179  Sum_probs=88.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCC-C---Cccc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-A---NLVR  138 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~-p---~~i~  138 (216)
                      .++.|+++.|||.|.+ |+++|..|...|++|+.++++.             .++.+.+++||+|+.+++. +   +.+.
T Consensus       164 ~~l~g~tvGIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  242 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRV-GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN  242 (347)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS
T ss_pred             cCCCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhH
Confidence            4789999999999986 9999999999999999987652             2567888999999999884 2   2354


Q ss_pred             C---CcccCCcEEEEeeeCCccCCC---CCCCCCCCeEec---ccChH--------HHh-hHcceecccCCcccHHHHHH
Q 027976          139 G---SWLKPGAVVLDVGTCPVDVSV---DPSCEYGYRLMG---DVCYE--------EAM-RLASVITPVPGGVGPMTVAM  200 (216)
Q Consensus       139 ~---~~i~~g~vViDvg~~~~~~~~---~~~~~~~~~l~G---Dvd~~--------~~~-~~~~~~tpvpgGvGp~T~am  200 (216)
                      .   +.+++++++||++.....++.   +.. .+ +++-|   ||-..        .+. -..-.+||-.+|...-+..-
T Consensus       243 ~~~l~~mk~gailIN~arg~~vd~~aL~~aL-~~-g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~  320 (347)
T 1mx3_A          243 DFTVKQMRQGAFLVNTARGGLVDEKALAQAL-KE-GRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIE  320 (347)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHH-HH-TSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHH
T ss_pred             HHHHhcCCCCCEEEECCCChHHhHHHHHHHH-Hh-CCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHH
Confidence            3   346889999999977643100   000 00 11211   22100        011 12345677777777666666


Q ss_pred             HHHHHHHHHHHHh
Q 027976          201 LLSNTLDSAKRAY  213 (216)
Q Consensus       201 Ll~n~~~a~~~~~  213 (216)
                      +.+..+...++|+
T Consensus       321 ~~~~~~~ni~~~~  333 (347)
T 1mx3_A          321 MREEAAREIRRAI  333 (347)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666553

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.01  E-value=1.1e-05  Score=73.48  Aligned_cols=81  Identities=20%  Similarity=0.258  Sum_probs=66.7

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------CCHHhhccCCCEEEEecCC-C---CcccCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV-A---NLVRGS  140 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~ADIVIsatg~-p---~~i~~~  140 (216)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.+++..          .++.+.+++||+|+..++. +   +++..+
T Consensus       151 ~~el~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~  229 (416)
T 3k5p_A          151 SREVRGKTLGIVGYGNI-GSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEA  229 (416)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHH
T ss_pred             CccCCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHH
Confidence            45789999999999986 9999999999999999998642          3688899999999999884 2   346554


Q ss_pred             c---ccCCcEEEEeeeCCc
Q 027976          141 W---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       141 ~---i~~g~vViDvg~~~~  156 (216)
                      .   +|+|+++||++-...
T Consensus       230 ~l~~mk~gailIN~aRG~v  248 (416)
T 3k5p_A          230 KLRKMKKGAFLINNARGSD  248 (416)
T ss_dssp             HHHHSCTTEEEEECSCTTS
T ss_pred             HHhhCCCCcEEEECCCChh
Confidence            4   589999999987654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.00  E-value=5.5e-06  Score=73.70  Aligned_cols=78  Identities=29%  Similarity=0.388  Sum_probs=57.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhccCCCEEEEecCCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~p~  135 (216)
                      .+++++|+|+|+|+ +|+.++..|...|++|++++++..                     ++.+.++++|+||+++|.+.
T Consensus       163 ~l~~~~V~ViGaG~-iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          163 GVAPASVVILGGGT-VGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG  241 (369)
T ss_dssp             BBCCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred             CCCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence            37899999999976 499999999999999999977521                     23355678999999998653


Q ss_pred             -----cccC---CcccCCcEEEEeeeCC
Q 027976          136 -----LVRG---SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       136 -----~i~~---~~i~~g~vViDvg~~~  155 (216)
                           ++..   +.++++.+++|+++..
T Consensus       242 ~~~~~li~~~~l~~mk~gg~iV~v~~~~  269 (369)
T 2eez_A          242 AKAPKLVTRDMLSLMKEGAVIVDVAVDQ  269 (369)
T ss_dssp             ----CCSCHHHHTTSCTTCEEEECC---
T ss_pred             cccchhHHHHHHHhhcCCCEEEEEecCC
Confidence                 2343   3357899999999753

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.99  E-value=1.9e-05  Score=69.36  Aligned_cols=79  Identities=14%  Similarity=0.235  Sum_probs=63.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhccCCCEEEEecCCC----Cccc
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVA----NLVR  138 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~ADIVIsatg~p----~~i~  138 (216)
                      .++.|+++.|||.|.+ |+++|..|...|++|++++++..             ++.+.+++||+||.+++..    +.+.
T Consensus       151 ~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~  229 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRI-GQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCN  229 (330)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBS
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhC
Confidence            4689999999999886 99999999999999999986532             4567788999999999853    2343


Q ss_pred             C---CcccCCcEEEEeeeCC
Q 027976          139 G---SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       139 ~---~~i~~g~vViDvg~~~  155 (216)
                      .   +.+++++++||++...
T Consensus       230 ~~~~~~mk~gailIn~srg~  249 (330)
T 2gcg_A          230 KDFFQKMKETAVFINISRGD  249 (330)
T ss_dssp             HHHHHHSCTTCEEEECSCGG
T ss_pred             HHHHhcCCCCcEEEECCCCc
Confidence            2   3468899999998764

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.97  E-value=1.9e-05  Score=71.33  Aligned_cols=81  Identities=12%  Similarity=0.219  Sum_probs=65.8

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCC-C---Cc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---NL  136 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~-p---~~  136 (216)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.              .++.+.+++||+|+.+++. +   ++
T Consensus       186 ~~~l~gktvGIIGlG~I-G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~l  264 (393)
T 2nac_A          186 AYDLEAMHVGTVAAGRI-GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHM  264 (393)
T ss_dssp             CCCCTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTC
T ss_pred             CccCCCCEEEEEeECHH-HHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHH
Confidence            35789999999999986 9999999999999999987652              2577889999999999884 2   34


Q ss_pred             ccC---CcccCCcEEEEeeeCCc
Q 027976          137 VRG---SWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       137 i~~---~~i~~g~vViDvg~~~~  156 (216)
                      +..   +.+++++++||++....
T Consensus       265 i~~~~l~~mk~gailIN~aRG~~  287 (393)
T 2nac_A          265 INDETLKLFKRGAYIVNTARGKL  287 (393)
T ss_dssp             BSHHHHTTSCTTEEEEECSCGGG
T ss_pred             hhHHHHhhCCCCCEEEECCCchH
Confidence            543   34688999999996653

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.97  E-value=1.8e-05  Score=69.67  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=86.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------CHHhhccCCCEEEEecCCC----CcccC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGVA----NLVRG  139 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~ADIVIsatg~p----~~i~~  139 (216)
                      .++.|+++.|||.|.+ |+++|..|...|++|++++++.+            ++.+.+++||+|+.+++..    +.+..
T Consensus       142 ~~l~g~~vgIIG~G~i-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~  220 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAI-GKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINE  220 (333)
T ss_dssp             CCSTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCH
T ss_pred             CCCCcCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCH
Confidence            5799999999999886 99999999999999999987642            4567788999999999854    23543


Q ss_pred             ---CcccCCcEEEEeeeCCccCCC---CCCCCCCCeE---ecccCh-------HHHhhH-cceecccCCcccHHHHHHHH
Q 027976          140 ---SWLKPGAVVLDVGTCPVDVSV---DPSCEYGYRL---MGDVCY-------EEAMRL-ASVITPVPGGVGPMTVAMLL  202 (216)
Q Consensus       140 ---~~i~~g~vViDvg~~~~~~~~---~~~~~~~~~l---~GDvd~-------~~~~~~-~~~~tpvpgGvGp~T~amLl  202 (216)
                         +.++++ ++||++.....++.   +.. .+ +++   --||-.       +-.... .-.+||-.+|.-.-+..-+.
T Consensus       221 ~~~~~mk~g-ilin~srg~~vd~~aL~~aL-~~-~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~~~~~  297 (333)
T 2d0i_A          221 ERVKKLEGK-YLVNIGRGALVDEKAVTEAI-KQ-GKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVG  297 (333)
T ss_dssp             HHHHHTBTC-EEEECSCGGGBCHHHHHHHH-HT-TCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHHHHHH
T ss_pred             HHHhhCCCC-EEEECCCCcccCHHHHHHHH-Hc-CCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHHHHHH
Confidence               346889 99999865432100   000 00 111   112211       111112 34567777777666666555


Q ss_pred             HHHHHHHHHHh
Q 027976          203 SNTLDSAKRAY  213 (216)
Q Consensus       203 ~n~~~a~~~~~  213 (216)
                      +..+...++++
T Consensus       298 ~~~~~n~~~~~  308 (333)
T 2d0i_A          298 FRAVENLLKVL  308 (333)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            56665555554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.92  E-value=2.2e-05  Score=71.09  Aligned_cols=81  Identities=20%  Similarity=0.309  Sum_probs=66.4

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------CCHHhhccCCCEEEEecCCC----CcccCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGVA----NLVRGS  140 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~ADIVIsatg~p----~~i~~~  140 (216)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.+++..          .++.+.+++||+|+..++..    +++..+
T Consensus       140 ~~el~gktlGiIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  218 (404)
T 1sc6_A          140 SFEARGKKLGIIGYGHI-GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK  218 (404)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHH
T ss_pred             ccccCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHH
Confidence            45799999999999986 9999999999999999997642          26788899999999998843    245443


Q ss_pred             ---cccCCcEEEEeeeCCc
Q 027976          141 ---WLKPGAVVLDVGTCPV  156 (216)
Q Consensus       141 ---~i~~g~vViDvg~~~~  156 (216)
                         .+|+|+++||++....
T Consensus       219 ~l~~mk~ga~lIN~aRg~~  237 (404)
T 1sc6_A          219 EISLMKPGSLLINASRGTV  237 (404)
T ss_dssp             HHHHSCTTEEEEECSCSSS
T ss_pred             HHhhcCCCeEEEECCCChH
Confidence               3589999999997654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.89  E-value=6.1e-06  Score=69.10  Aligned_cols=79  Identities=19%  Similarity=0.263  Sum_probs=56.3

Q ss_pred             HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC-----------------------------HHhhcc
Q 027976           72 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-----------------------------PEQITS  122 (216)
Q Consensus        72 ~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-----------------------------l~~~~~  122 (216)
                      +....++.++++.|||.|.+ |.+++..|++.|.+|++++|+.+.                             ..+.++
T Consensus        11 ~~~~~~~~~~kIgiIG~G~m-G~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~   89 (245)
T 3dtt_A           11 HHENLYFQGMKIAVLGTGTV-GRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAA   89 (245)
T ss_dssp             --------CCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHH
T ss_pred             cccccccCCCeEEEECCCHH-HHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHh
Confidence            34556788999999999886 999999999999999999876321                             235567


Q ss_pred             CCCEEEEecCCCCc---cc---CCcccCCcEEEEee
Q 027976          123 EADIVIAAAGVANL---VR---GSWLKPGAVVLDVG  152 (216)
Q Consensus       123 ~ADIVIsatg~p~~---i~---~~~i~~g~vViDvg  152 (216)
                      +||+||.+++....   +.   ...+ ++.+|||++
T Consensus        90 ~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           90 GAELVVNATEGASSIAALTAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             HCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECC
T ss_pred             cCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECC
Confidence            89999999986542   21   2234 789999998

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=97.87  E-value=3.4e-05  Score=71.97  Aligned_cols=136  Identities=20%  Similarity=0.219  Sum_probs=90.3

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCCC-C---ccc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA-N---LVR  138 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~p-~---~i~  138 (216)
                      +.++.|+++.|||.|.+ |+++|..|...|++|+.+++..            .++.+.+++||+|+.+++.. .   .+.
T Consensus       137 ~~~l~g~~vgIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~  215 (529)
T 1ygy_A          137 GTEIFGKTVGVVGLGRI-GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  215 (529)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             ccccCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhC
Confidence            35789999999999886 9999999999999999997653            14667888999999999854 2   354


Q ss_pred             C---CcccCCcEEEEeeeCCccCCCCCCC----CCCCeEec---cc-------ChHHHhhHcceecccCCcccHHHHHHH
Q 027976          139 G---SWLKPGAVVLDVGTCPVDVSVDPSC----EYGYRLMG---DV-------CYEEAMRLASVITPVPGGVGPMTVAML  201 (216)
Q Consensus       139 ~---~~i~~g~vViDvg~~~~~~~~~~~~----~~~~~l~G---Dv-------d~~~~~~~~~~~tpvpgGvGp~T~amL  201 (216)
                      .   ..++++++++|++.....   +...    ...+++-|   ||       |.+-+....-.+||-.+|.-+-+...+
T Consensus       216 ~~~~~~~k~g~ilin~arg~iv---~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~  292 (529)
T 1ygy_A          216 KEALAKTKPGVIIVNAARGGLV---DEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA  292 (529)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSB---CHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHH
T ss_pred             HHHHhCCCCCCEEEECCCCchh---hHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHH
Confidence            3   356899999999954332   1000    00011211   22       111122223457888888877776666


Q ss_pred             HHHHHHHHHHHhC
Q 027976          202 LSNTLDSAKRAYG  214 (216)
Q Consensus       202 l~n~~~a~~~~~~  214 (216)
                      ..+.++...+|++
T Consensus       293 ~~~~~~~l~~~l~  305 (529)
T 1ygy_A          293 GTDVAESVRLALA  305 (529)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            6666666666654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.84  E-value=2.3e-05  Score=68.12  Aligned_cols=77  Identities=18%  Similarity=0.346  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----ccC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VRG  139 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i~~  139 (216)
                      .+.++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.+++||+||.+++.+..    +..
T Consensus        29 ~~~~~I~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           29 PYARKITFLGTGSM-GLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             CCCSEEEEECCTTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             cCCCEEEEECccHH-HHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            35679999999886 9999999999999999998862              3567888999999999986532    211


Q ss_pred             ----CcccCCcEEEEeeeCC
Q 027976          140 ----SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       140 ----~~i~~g~vViDvg~~~  155 (216)
                          +.++++.+|||++...
T Consensus       108 ~~~~~~l~~~~~vi~~st~~  127 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASIT  127 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCC
T ss_pred             hhHHhhCCCCCEEEecCCCC
Confidence                2357899999998654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.84  E-value=1.8e-05  Score=67.43  Aligned_cols=73  Identities=15%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----c-c-C-
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----V-R-G-  139 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i-~-~-  139 (216)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.++++|+||.+++.+..    + . . 
T Consensus         2 ~~i~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~   80 (287)
T 3pef_A            2 QKFGFIGLGIM-GSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHG   80 (287)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEEeecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcch
Confidence            58999999875 9999999999999999998863              3566778899999999986531    2 1 2 


Q ss_pred             --CcccCCcEEEEeeeC
Q 027976          140 --SWLKPGAVVLDVGTC  154 (216)
Q Consensus       140 --~~i~~g~vViDvg~~  154 (216)
                        +.++++.+|+|++..
T Consensus        81 l~~~l~~~~~vi~~st~   97 (287)
T 3pef_A           81 VLEGIGEGRGYVDMSTV   97 (287)
T ss_dssp             HHHHCCTTCEEEECSCC
T ss_pred             HhhcCCCCCEEEeCCCC
Confidence              235789999999754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.80  E-value=1.4e-05  Score=57.99  Aligned_cols=74  Identities=22%  Similarity=0.207  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCC---------------------CHHhhccCCCEEEEecCCCCc
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK---------------------NPEQITSEADIVIAAAGVANL  136 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~p~~  136 (216)
                      .+++++|+|+|. +|+.++..|.+.| .+|+++.++..                     ++.+.++++|+||+++|....
T Consensus         4 ~~~~v~I~G~G~-iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGK-IGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT   82 (118)
T ss_dssp             TCEEEEEECCSH-HHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH
T ss_pred             CcCeEEEECCCH-HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh
Confidence            468999999965 5999999999999 78999977521                     234567788999998863221


Q ss_pred             --ccCCcccCCcEEEEeee
Q 027976          137 --VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       137 --i~~~~i~~g~vViDvg~  153 (216)
                        +-....+.|...+|+..
T Consensus        83 ~~~~~~~~~~g~~~~~~~~  101 (118)
T 3ic5_A           83 PIIAKAAKAAGAHYFDLTE  101 (118)
T ss_dssp             HHHHHHHHHTTCEEECCCS
T ss_pred             HHHHHHHHHhCCCEEEecC
Confidence              22223455666777654

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.78  E-value=3.6e-05  Score=67.91  Aligned_cols=136  Identities=15%  Similarity=0.152  Sum_probs=90.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------CCHHhhccCCCEEEEecCC-C---CcccCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGV-A---NLVRGS  140 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------~~l~~~~~~ADIVIsatg~-p---~~i~~~  140 (216)
                      .++.||++.|||.|.+ |+.+|..+...|++|..+++..           .++.+.+++||+|+..++. +   +++..+
T Consensus       137 ~~l~g~tvGIiG~G~I-G~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~  215 (334)
T 3kb6_A          137 RELNRLTLGVIGTGRI-GSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEE  215 (334)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHH
T ss_pred             ceecCcEEEEECcchH-HHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHH
Confidence            4688999999999986 9999999999999998887653           2578899999999988873 3   356665


Q ss_pred             c---ccCCcEEEEeeeCCccCCCCCC--CCCCCeEec---ccChHH-H----------------------hhHcceeccc
Q 027976          141 W---LKPGAVVLDVGTCPVDVSVDPS--CEYGYRLMG---DVCYEE-A----------------------MRLASVITPV  189 (216)
Q Consensus       141 ~---i~~g~vViDvg~~~~~~~~~~~--~~~~~~l~G---Dvd~~~-~----------------------~~~~~~~tpv  189 (216)
                      .   +|+++++|+++--...++. ..  ....+++-|   ||-..+ .                      ....-.+||=
T Consensus       216 ~l~~mk~~a~lIN~aRG~iVde~-aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPH  294 (334)
T 3kb6_A          216 RISLMKDGVYLINTARGKVVDTD-ALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPH  294 (334)
T ss_dssp             HHHHSCTTEEEEECSCGGGBCHH-HHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCS
T ss_pred             HHhhcCCCeEEEecCccccccHH-HHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEECCc
Confidence            4   4889999999876543100 00  000134544   663222 0                      0012357888


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHh
Q 027976          190 PGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       190 pgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      .+|.-.-+..-+.+.+++..++|+
T Consensus       295 ia~~T~ea~~~~~~~~~~ni~~~l  318 (334)
T 3kb6_A          295 IAYYTDKSLERIREETVKVVKAFV  318 (334)
T ss_dssp             CTTCBHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhChHHHHHHHHHHHHHHHHHHH
Confidence            788766555555555555555543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.78  E-value=2.1e-05  Score=67.97  Aligned_cols=76  Identities=17%  Similarity=0.203  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----c-c-
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----V-R-  138 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i-~-  138 (216)
                      +-++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.+++||+||.+++.+..    + . 
T Consensus        20 ~m~~I~iIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~   98 (310)
T 3doj_A           20 HMMEVGFLGLGIM-GKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDK   98 (310)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHST
T ss_pred             cCCEEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCc
Confidence            4478999999875 9999999999999999998863              3566778899999999987531    2 1 


Q ss_pred             C---CcccCCcEEEEeeeCC
Q 027976          139 G---SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       139 ~---~~i~~g~vViDvg~~~  155 (216)
                      .   +.++++.+|+|++...
T Consensus        99 ~~l~~~l~~g~~vv~~st~~  118 (310)
T 3doj_A           99 GGVLEQICEGKGYIDMSTVD  118 (310)
T ss_dssp             TCGGGGCCTTCEEEECSCCC
T ss_pred             hhhhhccCCCCEEEECCCCC
Confidence            1   3467899999998643

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.73  E-value=6.2e-05  Score=65.28  Aligned_cols=74  Identities=20%  Similarity=0.364  Sum_probs=59.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----c-cC--
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----V-RG--  139 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i-~~--  139 (216)
                      |+|-+||-|.+ |.++|..|++.|.+|++++|+.              .+..+..+++|+||+..+.+.-    + ..  
T Consensus         4 ~kIgfIGlG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g   82 (300)
T 3obb_A            4 KQIAFIGLGHM-GAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   82 (300)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSS
T ss_pred             CEEEEeeehHH-HHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhh
Confidence            58999999986 9999999999999999999873              3677889999999999986541    1 22  


Q ss_pred             --CcccCCcEEEEeeeCC
Q 027976          140 --SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       140 --~~i~~g~vViDvg~~~  155 (216)
                        +.+++|.++||++...
T Consensus        83 ~~~~~~~g~iiId~sT~~  100 (300)
T 3obb_A           83 LLAHIAPGTLVLECSTIA  100 (300)
T ss_dssp             STTSCCC-CEEEECSCCC
T ss_pred             hhhcCCCCCEEEECCCCC
Confidence              2357899999998764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.73  E-value=4.7e-05  Score=65.38  Aligned_cols=73  Identities=21%  Similarity=0.257  Sum_probs=58.2

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCccc------CC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANLVR------GS  140 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~i~------~~  140 (216)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.++ +|+||.+++.+..+.      .+
T Consensus        16 ~~I~vIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~   93 (296)
T 3qha_A           16 LKLGYIGLGNM-GAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAG   93 (296)
T ss_dssp             CCEEEECCSTT-HHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHT
T ss_pred             CeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHH
Confidence            68999999875 9999999999999999998874              25667778 999999998653211      23


Q ss_pred             cccCCcEEEEeeeCC
Q 027976          141 WLKPGAVVLDVGTCP  155 (216)
Q Consensus       141 ~i~~g~vViDvg~~~  155 (216)
                      .++++.+|+|.+...
T Consensus        94 ~l~~g~ivv~~st~~  108 (296)
T 3qha_A           94 HAKPGTVIAIHSTIS  108 (296)
T ss_dssp             TCCTTCEEEECSCCC
T ss_pred             hcCCCCEEEEeCCCC
Confidence            567899999987653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.70  E-value=2.6e-05  Score=71.39  Aligned_cols=74  Identities=16%  Similarity=0.157  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHHhhccCCCEEEEecCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------~l~~~~~~ADIVIsatg~p~  135 (216)
                      ++|+|+|+|+|++ |++++..|++.|++|++++|+..                       ++.+.++++|+||+++|...
T Consensus         2 ~~k~VlViGaG~i-G~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~   80 (450)
T 1ff9_A            2 ATKSVLMLGSGFV-TRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF   80 (450)
T ss_dssp             CCCEEEEECCSTT-HHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--C
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCcccc
Confidence            4789999998876 99999999999999999987510                       23356778999999998532


Q ss_pred             -c-ccCCcccCCcEEEEeee
Q 027976          136 -L-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       136 -~-i~~~~i~~g~vViDvg~  153 (216)
                       . +..+.++.|..++|..+
T Consensus        81 ~~~i~~a~l~~g~~vvd~~~  100 (450)
T 1ff9_A           81 HATVIKSAIRQKKHVVTTSY  100 (450)
T ss_dssp             HHHHHHHHHHHTCEEEESSC
T ss_pred             chHHHHHHHhCCCeEEEeec
Confidence             2 44456777777888765

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.70  E-value=5.4e-05  Score=63.30  Aligned_cols=122  Identities=16%  Similarity=0.261  Sum_probs=70.4

Q ss_pred             HHHHHHHHHh--CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-C-----------------HHhhccCC
Q 027976           65 KGCIELLIRS--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-N-----------------PEQITSEA  124 (216)
Q Consensus        65 ~g~~~~L~~~--~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-~-----------------l~~~~~~A  124 (216)
                      .|-++..+.+  .++++|++|+|||+|.. |...+..|++.||.|+++..... .                 ..+.+..+
T Consensus        14 ~~~~~~~~~~Pifl~L~gk~VLVVGgG~v-a~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~a   92 (223)
T 3dfz_A           14 SGHIEGRHMYTVMLDLKGRSVLVVGGGTI-ATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNV   92 (223)
T ss_dssp             --------CCEEEECCTTCCEEEECCSHH-HHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSC
T ss_pred             cCcccccCccccEEEcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCC
Confidence            3444444443  35799999999999885 99999999999999999865421 1                 12457889


Q ss_pred             CEEEEecCCCCc---ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHh---hHcceecccCCcccHHHH
Q 027976          125 DIVIAAAGVANL---VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAM---RLASVITPVPGGVGPMTV  198 (216)
Q Consensus       125 DIVIsatg~p~~---i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~---~~~~~~tpvpgGvGp~T~  198 (216)
                      |+||.||+.+..   +... -+. .+.+++.-+|..              +|+=+.+.-   ...-+++  -||-+|..+
T Consensus        93 dLVIaAT~d~~~N~~I~~~-ak~-gi~VNvvD~p~~--------------~~f~~Paiv~rg~l~iaIS--T~G~sP~la  154 (223)
T 3dfz_A           93 FFIVVATNDQAVNKFVKQH-IKN-DQLVNMASSFSD--------------GNIQIPAQFSRGRLSLAIS--TDGASPLLT  154 (223)
T ss_dssp             SEEEECCCCTHHHHHHHHH-SCT-TCEEEC-----C--------------CSEECCEEEEETTEEEEEE--CTTSCHHHH
T ss_pred             CEEEECCCCHHHHHHHHHH-HhC-CCEEEEeCCccc--------------CeEEEeeEEEeCCEEEEEE--CCCCCcHHH
Confidence            999999998753   2211 132 344555555432              111112211   2233444  578899888


Q ss_pred             HHHHHHH
Q 027976          199 AMLLSNT  205 (216)
Q Consensus       199 amLl~n~  205 (216)
                      ..|=+..
T Consensus       155 ~~iR~~i  161 (223)
T 3dfz_A          155 KRIKEDL  161 (223)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7775544

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.70  E-value=2.3e-05  Score=66.81  Aligned_cols=74  Identities=19%  Similarity=0.212  Sum_probs=58.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----cc---c-
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV---R-  138 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i---~-  138 (216)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.++++|+||.+++.+.    .+   . 
T Consensus         2 ~~I~iiG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~   80 (287)
T 3pdu_A            2 TTYGFLGLGIM-GGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANG   80 (287)
T ss_dssp             CCEEEECCSTT-HHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CeEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchh
Confidence            47999999886 9999999999999999998863              356677889999999999753    12   1 


Q ss_pred             -CCcccCCcEEEEeeeCC
Q 027976          139 -GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       139 -~~~i~~g~vViDvg~~~  155 (216)
                       .+.++++.+++|++...
T Consensus        81 l~~~l~~g~~vv~~st~~   98 (287)
T 3pdu_A           81 VLEGIGGGRGYIDMSTVD   98 (287)
T ss_dssp             GGGTCCTTCEEEECSCCC
T ss_pred             hhhcccCCCEEEECCCCC
Confidence             13467899999998653

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.68  E-value=3.8e-05  Score=66.38  Aligned_cols=78  Identities=15%  Similarity=0.104  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----ccc
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR  138 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i~  138 (216)
                      ....++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.++++|+||.+++.+.    .+.
T Consensus         6 ~~~~~~IgiIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAM-GTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCSCSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             ccCCCeEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            345688999999886 9999999999999999998862              356778889999999998654    122


Q ss_pred             CC---cccCCcEEEEeeeCC
Q 027976          139 GS---WLKPGAVVLDVGTCP  155 (216)
Q Consensus       139 ~~---~i~~g~vViDvg~~~  155 (216)
                      .+   .++++.+|||++...
T Consensus        85 ~~~l~~~~~g~ivid~st~~  104 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTNA  104 (306)
T ss_dssp             STTHHHHTTTCEEEECCCCC
T ss_pred             ccchhhccCCCEEEECCCCC
Confidence            11   236789999987553

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.65  E-value=4.4e-05  Score=65.65  Aligned_cols=75  Identities=13%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------CCHHhhccCCCEEEEecCCCCc----c---
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITSEADIVIAAAGVANL----V---  137 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------~~l~~~~~~ADIVIsatg~p~~----i---  137 (216)
                      .++|.|||.|.+ |.+++..|++.|.+|++++++.               .++.+.+++||+||.+++.+..    +   
T Consensus         7 ~~~I~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~   85 (303)
T 3g0o_A            7 DFHVGIVGLGSM-GMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE   85 (303)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred             CCeEEEECCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence            468999999875 9999999999999999998762               2455677899999999997531    2   


Q ss_pred             c--CCcccCCcEEEEeeeCC
Q 027976          138 R--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       138 ~--~~~i~~g~vViDvg~~~  155 (216)
                      .  .+.++++.+|+|++...
T Consensus        86 ~~l~~~l~~g~ivv~~st~~  105 (303)
T 3g0o_A           86 DGVAHLMKPGSAVMVSSTIS  105 (303)
T ss_dssp             CCCGGGSCTTCEEEECSCCC
T ss_pred             hhHHhhCCCCCEEEecCCCC
Confidence            1  13467899999998543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.62  E-value=9.3e-05  Score=65.78  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=59.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCC---CEEEEecCCCCc---c
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEA---DIVIAAAGVANL---V  137 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~A---DIVIsatg~p~~---i  137 (216)
                      ++.++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.++++   |+||.+++.+..   +
T Consensus        20 m~~mkIgiIGlG~m-G~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRM-GADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHH
T ss_pred             hcCCEEEEECchHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHH
Confidence            45789999999875 9999999999999999998862              3566777777   999999986631   1


Q ss_pred             c--CCcccCCcEEEEeeeCC
Q 027976          138 R--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       138 ~--~~~i~~g~vViDvg~~~  155 (216)
                      .  ...++++.+|||++...
T Consensus        99 ~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           99 QRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             HHHGGGCCTTCEEEECSSCC
T ss_pred             HHHHhhCCCCCEEEeCCCCC
Confidence            1  23467899999997654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.58  E-value=7.9e-05  Score=64.81  Aligned_cols=73  Identities=16%  Similarity=0.105  Sum_probs=57.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC-------------------C-CHHhhccCCCEEEEecCCCCc---
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT-------------------K-NPEQITSEADIVIAAAGVANL---  136 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t-------------------~-~l~~~~~~ADIVIsatg~p~~---  136 (216)
                      ++|.|||.|.+ |.+++..|++.| .+|++++++.                   . ++.+.+++||+||.+++.+..   
T Consensus        25 m~IgvIG~G~m-G~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~~~~s~~e~~~~aDvVi~avp~~~~~~~  103 (317)
T 4ezb_A           25 TTIAFIGFGEA-AQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIACADVVLSLVVGAATKAV  103 (317)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTCEEESSGGGGGGCSEEEECCCGGGHHHH
T ss_pred             CeEEEECccHH-HHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCCCCCCHHHHHhcCCEEEEecCCHHHHHH
Confidence            68999999875 999999999999 9999998864                   1 456678889999999986542   


Q ss_pred             cc--CCcccCCcEEEEeeeC
Q 027976          137 VR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       137 i~--~~~i~~g~vViDvg~~  154 (216)
                      +.  .+.++++.+|||++..
T Consensus       104 ~~~i~~~l~~~~ivv~~st~  123 (317)
T 4ezb_A          104 AASAAPHLSDEAVFIDLNSV  123 (317)
T ss_dssp             HHHHGGGCCTTCEEEECCSC
T ss_pred             HHHHHhhcCCCCEEEECCCC
Confidence            11  1346788999998743

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.58  E-value=0.00015  Score=59.15  Aligned_cols=58  Identities=17%  Similarity=0.119  Sum_probs=43.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC--------------------HHhhccCCCEEEEecCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------------PEQITSEADIVIAAAGV  133 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~--------------------l~~~~~~ADIVIsatg~  133 (216)
                      ..++|++|+|.|++|-+|+.++..|+++|++|+++.|+...                    +.+.++..|+||+..|.
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence            35789999999998888999999999999999999876432                    23445566777776664

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.58  E-value=0.00013  Score=65.10  Aligned_cols=93  Identities=16%  Similarity=0.159  Sum_probs=62.4

Q ss_pred             CCcHHHHHHH----HHH-hCC-CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH--------------Hhh
Q 027976           61 PCTPKGCIEL----LIR-SGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------EQI  120 (216)
Q Consensus        61 p~Ta~g~~~~----L~~-~~~-~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l--------------~~~  120 (216)
                      +.|++|+...    +++ .+. +++||+|+|+|.|.+ |+.+|..|.+.|++|++++++...+              .+.
T Consensus       148 ~aTg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~V-G~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~l  226 (364)
T 1leh_A          148 PVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNV-AKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAI  226 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGT
T ss_pred             cchhhHHHHHHHHHHHhhccccCCCcCEEEEECchHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHH
Confidence            5687876544    444 365 799999999999885 9999999999999999887753211              122


Q ss_pred             cc-CCCEEEEecCCCCcccCCcccC-C-cEEEEeeeCC
Q 027976          121 TS-EADIVIAAAGVANLVRGSWLKP-G-AVVLDVGTCP  155 (216)
Q Consensus       121 ~~-~ADIVIsatg~p~~i~~~~i~~-g-~vViDvg~~~  155 (216)
                      +. ++||+|.+. ..+.++.+.++. + .+|++.+-.|
T Consensus       227 l~~~~DIvip~a-~~~~I~~~~~~~lg~~iV~e~An~p  263 (364)
T 1leh_A          227 YGVTCDIFAPCA-LGAVLNDFTIPQLKAKVIAGSADNQ  263 (364)
T ss_dssp             TTCCCSEEEECS-CSCCBSTTHHHHCCCSEECCSCSCC
T ss_pred             hccCCcEeeccc-hHHHhCHHHHHhCCCcEEEeCCCCC
Confidence            22 789999774 333555544322 3 3455555333

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.57  E-value=8.1e-05  Score=64.34  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=56.3

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----ccC---
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VRG---  139 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i~~---  139 (216)
                      +||-+||-|.+ |.++|..|++.|++|++++|+.              .+..+.++++|+||+.++.+.-    +..   
T Consensus         6 ~kIgfIGLG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~   84 (297)
T 4gbj_A            6 EKIAFLGLGNL-GTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELV   84 (297)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHH
T ss_pred             CcEEEEecHHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHH
Confidence            57999999986 9999999999999999998863              2567889999999999986542    211   


Q ss_pred             CcccCCcEEEEeeeCC
Q 027976          140 SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       140 ~~i~~g~vViDvg~~~  155 (216)
                      ..++++.++||.+...
T Consensus        85 ~~~~~~~iiid~sT~~  100 (297)
T 4gbj_A           85 EKLGKDGVHVSMSTIS  100 (297)
T ss_dssp             HHHCTTCEEEECSCCC
T ss_pred             hhcCCCeEEEECCCCC
Confidence            2346788999988653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.56  E-value=7.8e-05  Score=64.12  Aligned_cols=74  Identities=19%  Similarity=0.266  Sum_probs=58.3

Q ss_pred             CCeEEEEc-CCchhHHHHHHHHHhCCCEEEEEeCCCC-CHHhhccCCCEEEEecCCCCc---cc--CCcccCCcEEEEee
Q 027976           80 GKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK-NPEQITSEADIVIAAAGVANL---VR--GSWLKPGAVVLDVG  152 (216)
Q Consensus        80 gk~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~-~l~~~~~~ADIVIsatg~p~~---i~--~~~i~~g~vViDvg  152 (216)
                      .++|.||| .|.+ |.+++..|.+.|.+|++++++.. +..+.+++||+||.+++....   +.  ...++++.+|+|++
T Consensus        21 ~~~I~iIGg~G~m-G~~la~~l~~~G~~V~~~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           21 IHKIVIVGGYGKL-GGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             CCCEEEETTTSHH-HHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECC
T ss_pred             CCEEEEEcCCCHH-HHHHHHHHHhCCCeEEEEECCcccCHHHHhcCCCEEEEeCCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence            46899999 8765 99999999999999999987653 567788999999999986441   21  23467889999986


Q ss_pred             eC
Q 027976          153 TC  154 (216)
Q Consensus       153 ~~  154 (216)
                      ..
T Consensus       100 sv  101 (298)
T 2pv7_A          100 SV  101 (298)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.54  E-value=0.00013  Score=63.16  Aligned_cols=74  Identities=18%  Similarity=0.274  Sum_probs=58.0

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC----------------CCHHhhccCCCEEEEecCCCCcc---c-
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT----------------KNPEQITSEADIVIAAAGVANLV---R-  138 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~~i---~-  138 (216)
                      -++|.|||.|.+ |.+++..|++.|. +|++++++.                .++.+.+++||+||.+++.+...   . 
T Consensus        24 ~~~I~iIG~G~m-G~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~  102 (312)
T 3qsg_A           24 AMKLGFIGFGEA-ASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQ  102 (312)
T ss_dssp             -CEEEEECCSHH-HHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHH
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHh
Confidence            468999999875 9999999999999 999999851                35667888999999999876521   1 


Q ss_pred             -CCcccCCcEEEEeeeC
Q 027976          139 -GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       139 -~~~i~~g~vViDvg~~  154 (216)
                       .+.++++.+|||++..
T Consensus       103 l~~~l~~~~ivvd~st~  119 (312)
T 3qsg_A          103 AGPHLCEGALYADFTSC  119 (312)
T ss_dssp             HGGGCCTTCEEEECCCC
T ss_pred             hHhhcCCCCEEEEcCCC
Confidence             2346778889988654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.54  E-value=0.0001  Score=64.17  Aligned_cols=75  Identities=17%  Similarity=0.176  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC----------------CCHHh-hccCCCEEEEecCCCCc---
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------KNPEQ-ITSEADIVIAAAGVANL---  136 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t----------------~~l~~-~~~~ADIVIsatg~p~~---  136 (216)
                      .-++|.|||.|.+ |.+++..|.+.|.  +|++++++.                .++.+ .+++||+||.+++....   
T Consensus        32 ~~~kI~IIG~G~m-G~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v  110 (314)
T 3ggo_A           32 SMQNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI  110 (314)
T ss_dssp             SCSEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHHH
T ss_pred             CCCEEEEEeeCHH-HHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHHH
Confidence            3479999999875 9999999999998  899998752                24556 78899999999985431   


Q ss_pred             cc--CCcccCCcEEEEeeeC
Q 027976          137 VR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       137 i~--~~~i~~g~vViDvg~~  154 (216)
                      +.  ...++++++|+|++..
T Consensus       111 l~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          111 AKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             HHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHhhccCCCcEEEECCCC
Confidence            11  1346789999998754

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=97.52  E-value=0.00029  Score=64.66  Aligned_cols=92  Identities=21%  Similarity=0.281  Sum_probs=76.1

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCC-------------------------C
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL-------------------------T  114 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~-------------------------t  114 (216)
                      +..|++..|+-.+.+++..++++.|+|-+ |.+++.+|...|.   ++++|+++                         +
T Consensus       202 ~lAgllnAlki~gk~l~d~riV~~GAGaA-Gigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~  280 (487)
T 3nv9_A          202 TLAGLLNALKLVKKDIHECRMVFIGAGSS-NTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETT  280 (487)
T ss_dssp             HHHHHHHHHHHHTCCGGGCCEEEECCSHH-HHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhc
Confidence            56778889999999999999999999987 9999999999998   59999654                         0


Q ss_pred             -----CCHHhhccCCCEEEEecCC-CCcccCCccc---CCcEEEEeeeCCc
Q 027976          115 -----KNPEQITSEADIVIAAAGV-ANLVRGSWLK---PGAVVLDVGTCPV  156 (216)
Q Consensus       115 -----~~l~~~~~~ADIVIsatg~-p~~i~~~~i~---~g~vViDvg~~~~  156 (216)
                           .+|.+.++.+|++|-.... |+.++++|++   +.-+|+-++ ||.
T Consensus       281 n~~~~~~L~eav~~adVlIG~S~~~pg~ft~e~V~~Ma~~PIIFaLS-NPt  330 (487)
T 3nv9_A          281 NPSKFGSIAEACVGADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCA-NPV  330 (487)
T ss_dssp             CTTCCCSHHHHHTTCSEEEECCCSSCCCCCHHHHHTSCSSCEEEECC-SSS
T ss_pred             ccccCCCHHHHHhcCCEEEEecccCCCCCCHHHHHhhcCCCEEEECC-CCC
Confidence                 2467889999999977643 7889999986   467888888 654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.49  E-value=0.00019  Score=58.58  Aligned_cols=73  Identities=22%  Similarity=0.342  Sum_probs=52.5

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCC---ccc--CCcccCCcEEE
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVAN---LVR--GSWLKPGAVVL  149 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~---~i~--~~~i~~g~vVi  149 (216)
                      +..+..+++.|||+|.+ |.+++..|++.|.+|++++++.+    .+++||+||.+++.+.   .+.  ...++ +.+++
T Consensus        14 ~~~~~~~~I~iiG~G~m-G~~la~~l~~~g~~V~~~~~~~~----~~~~aD~vi~av~~~~~~~v~~~l~~~~~-~~~vi   87 (209)
T 2raf_A           14 NLYFQGMEITIFGKGNM-GQAIGHNFEIAGHEVTYYGSKDQ----ATTLGEIVIMAVPYPALAALAKQYATQLK-GKIVV   87 (209)
T ss_dssp             ------CEEEEECCSHH-HHHHHHHHHHTTCEEEEECTTCC----CSSCCSEEEECSCHHHHHHHHHHTHHHHT-TSEEE
T ss_pred             ccccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCHH----HhccCCEEEEcCCcHHHHHHHHHHHHhcC-CCEEE
Confidence            45678899999999875 99999999999999999988654    6789999999998322   111  12345 88999


Q ss_pred             Eeee
Q 027976          150 DVGT  153 (216)
Q Consensus       150 Dvg~  153 (216)
                      |+..
T Consensus        88 ~~~~   91 (209)
T 2raf_A           88 DITN   91 (209)
T ss_dssp             ECCC
T ss_pred             EECC
Confidence            9864

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.49  E-value=6.9e-05  Score=65.83  Aligned_cols=74  Identities=22%  Similarity=0.228  Sum_probs=57.5

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------CHHhhccCCCEEEEecCCCC---ccc--
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITSEADIVIAAAGVAN---LVR--  138 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~~ADIVIsatg~p~---~i~--  138 (216)
                      +++++|.|||.|.+ |.+++..|...|.+|++++++..              ++.+.+++||+||.+++...   .+.  
T Consensus        14 l~~~~I~IIG~G~m-G~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~~~~v~~~~   92 (338)
T 1np3_A           14 IQGKKVAIIGYGSQ-GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEE   92 (338)
T ss_dssp             HHTSCEEEECCSHH-HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred             hcCCEEEEECchHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHHHHHHHHHH
Confidence            35689999999875 99999999999999998887642              34567889999999998532   233  


Q ss_pred             -CCcccCCcEEEEee
Q 027976          139 -GSWLKPGAVVLDVG  152 (216)
Q Consensus       139 -~~~i~~g~vViDvg  152 (216)
                       ...++++++|+|++
T Consensus        93 i~~~l~~~~ivi~~~  107 (338)
T 1np3_A           93 IEPNLKKGATLAFAH  107 (338)
T ss_dssp             TGGGCCTTCEEEESC
T ss_pred             HHhhCCCCCEEEEcC
Confidence             13567899999874

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.48  E-value=7.7e-05  Score=62.95  Aligned_cols=72  Identities=18%  Similarity=0.267  Sum_probs=55.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC-------------HHhhccCCCEEEEecCCCCccc------CCc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-------------PEQITSEADIVIAAAGVANLVR------GSW  141 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-------------l~~~~~~ADIVIsatg~p~~i~------~~~  141 (216)
                      +++.|||.|.+ |.+++..|.+ |.+|++++++.+.             +.+.++++|+||.+++.+..+.      .++
T Consensus         2 ~~i~iiG~G~~-G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~   79 (289)
T 2cvz_A            2 EKVAFIGLGAM-GYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPY   79 (289)
T ss_dssp             CCEEEECCSTT-HHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEcccHH-HHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHHHHHHhh
Confidence            36999999876 9999999999 9999999876421             3355778999999999764211      245


Q ss_pred             ccCCcEEEEeeeC
Q 027976          142 LKPGAVVLDVGTC  154 (216)
Q Consensus       142 i~~g~vViDvg~~  154 (216)
                      ++++.+|+|++..
T Consensus        80 l~~~~~vv~~s~~   92 (289)
T 2cvz_A           80 LREGTYWVDATSG   92 (289)
T ss_dssp             CCTTEEEEECSCC
T ss_pred             CCCCCEEEECCCC
Confidence            7789999998643

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.48  E-value=0.0001  Score=63.34  Aligned_cols=72  Identities=24%  Similarity=0.345  Sum_probs=56.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----ccC---
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VRG---  139 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i~~---  139 (216)
                      +++.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+..    +..   
T Consensus        31 ~~I~iIG~G~m-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~  109 (316)
T 2uyy_A           31 KKIGFLGLGLM-GSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG  109 (316)
T ss_dssp             SCEEEECCSHH-HHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CeEEEEcccHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence            67999999875 9999999999999999998753              2455667889999999995431    221   


Q ss_pred             --CcccCCcEEEEeee
Q 027976          140 --SWLKPGAVVLDVGT  153 (216)
Q Consensus       140 --~~i~~g~vViDvg~  153 (216)
                        +.++++.+|+|++.
T Consensus       110 ~~~~l~~~~~vv~~s~  125 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMST  125 (316)
T ss_dssp             GGGGCCTTCEEEECSC
T ss_pred             HhhcCCCCCEEEECCC
Confidence              45778999999863

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.46  E-value=0.00013  Score=61.89  Aligned_cols=70  Identities=23%  Similarity=0.366  Sum_probs=54.8

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----cccC----
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVRG----  139 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i~~----  139 (216)
                      ++.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+..    
T Consensus         2 ~i~iiG~G~m-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            2 PVGFIGLGNM-GNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CEEEECCSTT-HHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             eEEEEeccHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            6899999876 9999999999999999998763              245667788999999998653    1221    


Q ss_pred             -CcccCCcEEEEee
Q 027976          140 -SWLKPGAVVLDVG  152 (216)
Q Consensus       140 -~~i~~g~vViDvg  152 (216)
                       +.++++.+|+|.+
T Consensus        81 ~~~l~~~~~vv~~s   94 (296)
T 2gf2_A           81 LKKVKKGSLLIDSS   94 (296)
T ss_dssp             GGTCCTTCEEEECS
T ss_pred             HhcCCCCCEEEECC
Confidence             2457889999954

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.41  E-value=0.00016  Score=61.50  Aligned_cols=73  Identities=23%  Similarity=0.406  Sum_probs=57.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----cc--C-
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VR--G-  139 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i~--~-  139 (216)
                      .++.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+..    +.  . 
T Consensus         5 ~~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   83 (301)
T 3cky_A            5 IKIGFIGLGAM-GKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG   83 (301)
T ss_dssp             CEEEEECCCTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence            58999999875 9999999999999999997752              2456677889999999987541    22  1 


Q ss_pred             --CcccCCcEEEEeeeC
Q 027976          140 --SWLKPGAVVLDVGTC  154 (216)
Q Consensus       140 --~~i~~g~vViDvg~~  154 (216)
                        ..++++.+|+|+...
T Consensus        84 l~~~l~~~~~vv~~~~~  100 (301)
T 3cky_A           84 VLSACKAGTVIVDMSSV  100 (301)
T ss_dssp             HHHHSCTTCEEEECCCC
T ss_pred             HhhcCCCCCEEEECCCC
Confidence              246789999998644

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.39  E-value=0.00016  Score=61.39  Aligned_cols=73  Identities=19%  Similarity=0.287  Sum_probs=56.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----ccc--C-
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR--G-  139 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i~--~-  139 (216)
                      .++.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+.  . 
T Consensus         6 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~   84 (299)
T 1vpd_A            6 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG   84 (299)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             ceEEEECchHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcch
Confidence            37999999875 9999999999999999997752              345667788999999998653    121  1 


Q ss_pred             --CcccCCcEEEEeeeC
Q 027976          140 --SWLKPGAVVLDVGTC  154 (216)
Q Consensus       140 --~~i~~g~vViDvg~~  154 (216)
                        .+++++.+|+|++..
T Consensus        85 l~~~l~~~~~vv~~s~~  101 (299)
T 1vpd_A           85 IIEGAKPGTVLIDMSSI  101 (299)
T ss_dssp             HHHHCCTTCEEEECSCC
T ss_pred             HhhcCCCCCEEEECCCC
Confidence              346789999998643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.37  E-value=0.00019  Score=58.80  Aligned_cols=74  Identities=15%  Similarity=0.179  Sum_probs=55.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhccCCCEEEEecCCCCc---cc-CCcc
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVANL---VR-GSWL  142 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~ADIVIsatg~p~~---i~-~~~i  142 (216)
                      .+++.|||+|.+ |++++..|.+.|.+|++++|+.+             ++.+.++++|+||.+++....   +. ....
T Consensus        28 ~~~I~iiG~G~~-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~~~~~~v~~l~~~~  106 (215)
T 2vns_A           28 APKVGILGSGDF-ARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREHYSSLCSLSDQL  106 (215)
T ss_dssp             -CCEEEECCSHH-HHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCGGGSGGGGGGHHHH
T ss_pred             CCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCChHHHHHHHHHHHhc
Confidence            468999998775 99999999999999999987632             345678899999999984321   11 0112


Q ss_pred             cCCcEEEEeeeCC
Q 027976          143 KPGAVVLDVGTCP  155 (216)
Q Consensus       143 ~~g~vViDvg~~~  155 (216)
                       ++.+++|+....
T Consensus       107 -~~~~vv~~s~g~  118 (215)
T 2vns_A          107 -AGKILVDVSNPT  118 (215)
T ss_dssp             -TTCEEEECCCCC
T ss_pred             -CCCEEEEeCCCc
Confidence             689999998643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.32  E-value=0.00033  Score=59.68  Aligned_cols=71  Identities=20%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------------------------CCHHhhc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------------KNPEQIT  121 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------------------~~l~~~~  121 (216)
                      ++|.|||+|.+ |.++|..|+..|++|++++++.                                       .++.+.+
T Consensus         5 ~kV~VIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~   83 (283)
T 4e12_A            5 TNVTVLGTGVL-GSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV   83 (283)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence            68999999875 9999999999999999997652                                       1334567


Q ss_pred             cCCCEEEEecCCCC-----ccc--CCcccCCcEEEEee
Q 027976          122 SEADIVIAAAGVAN-----LVR--GSWLKPGAVVLDVG  152 (216)
Q Consensus       122 ~~ADIVIsatg~p~-----~i~--~~~i~~g~vViDvg  152 (216)
                      ++||+||.+++...     .+.  .+.+++++++++..
T Consensus        84 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~t  121 (283)
T 4e12_A           84 KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNS  121 (283)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECC
Confidence            89999999998531     111  12356788888754

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.30  E-value=0.0004  Score=56.55  Aligned_cols=57  Identities=12%  Similarity=0.146  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCCC---------------------CHHhhccCCCEEEEecCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK---------------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~p  134 (216)
                      +++|+++|.|++|-+|+.++..|+++|+  +|+++.|+..                     ++.+.++..|+||+..|..
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5689999999988889999999999999  9999877531                     2345677889999988853

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.28  E-value=0.00057  Score=57.97  Aligned_cols=58  Identities=19%  Similarity=0.219  Sum_probs=47.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------------CHHhhccCCCEEEEec
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------NPEQITSEADIVIAAA  131 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------~l~~~~~~ADIVIsat  131 (216)
                      ++|+||.++|.|++.-+|++++..|+++|++|.++.|...                        ...+....-|++|+..
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnA   86 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVHML   86 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEECC
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            4799999999999988899999999999999999987531                        1123445679999887


Q ss_pred             CC
Q 027976          132 GV  133 (216)
Q Consensus       132 g~  133 (216)
                      |.
T Consensus        87 G~   88 (261)
T 4h15_A           87 GG   88 (261)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.27  E-value=0.00039  Score=58.78  Aligned_cols=72  Identities=18%  Similarity=0.255  Sum_probs=55.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCC----ccc----
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR----  138 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~----~i~----  138 (216)
                      .++.|||.|.+ |.+++..|.+.|.+|++++ +.              .++.+.++++|+||.+++.+.    .+.    
T Consensus         4 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   81 (295)
T 1yb4_A            4 MKLGFIGLGIM-GSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHG   81 (295)
T ss_dssp             CEEEECCCSTT-HHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTS
T ss_pred             CEEEEEccCHH-HHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchh
Confidence            47999999876 9999999999999998887 42              235566889999999998764    122    


Q ss_pred             -CCcccCCcEEEEeeeC
Q 027976          139 -GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       139 -~~~i~~g~vViDvg~~  154 (216)
                       ...++++.+|+|+...
T Consensus        82 l~~~l~~~~~vv~~s~~   98 (295)
T 1yb4_A           82 CAKTSLQGKTIVDMSSI   98 (295)
T ss_dssp             STTSCCTTEEEEECSCC
T ss_pred             HhhcCCCCCEEEECCCC
Confidence             1346789999998643

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.27  E-value=0.00067  Score=59.69  Aligned_cols=95  Identities=15%  Similarity=0.175  Sum_probs=66.6

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---------------------H
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------P  117 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l  117 (216)
                      .+||....++..|++.+....|++|+|+|+|+ +|..++.++...|++|+++.++.+.                     +
T Consensus       167 ~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~  245 (366)
T 1yqd_A          167 PLLCAGITVYSPLKYFGLDEPGKHIGIVGLGG-LGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQM  245 (366)
T ss_dssp             GGGTHHHHHHHHHHHTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHH
T ss_pred             hhhhhHHHHHHHHHhcCcCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHH
Confidence            35666666677777766554899999999866 5999999999999998877654321                     1


Q ss_pred             HhhccCCCEEEEecCCCCccc--CCcccCCcEEEEeeeC
Q 027976          118 EQITSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       118 ~~~~~~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~  154 (216)
                      .+....+|+||+++|.+..+.  -+.++++..++.++..
T Consensus       246 ~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          246 QAAAGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             HHTTTCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCC
T ss_pred             HHhhCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccC
Confidence            222345799999998764322  2456777777788764

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=97.26  E-value=0.0017  Score=54.21  Aligned_cols=80  Identities=18%  Similarity=0.249  Sum_probs=56.1

Q ss_pred             CCCCCeEEEEcCC----------------chhHHHHHHHHHhCCCEEEEEeCCCC-------------C-------HHhh
Q 027976           77 EIMGKNAVVIGRS----------------NIVGLPTSLLLQRHHATVSIVHALTK-------------N-------PEQI  120 (216)
Q Consensus        77 ~l~gk~v~ViG~g----------------g~vg~~~a~~L~~~ga~Vti~~~~t~-------------~-------l~~~  120 (216)
                      +++||+|+|-|++                |-+|+++|..|+.+||+|+++++...             +       ..+.
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~~~~~~v~~~   84 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   84 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccccCCCCeEEccCcHHHHHHHHHHh
Confidence            5789999999993                44599999999999999999865421             1       1234


Q ss_pred             ccCCCEEEEecCCCCc----ccCCcccC---C--cEEEEeeeCCc
Q 027976          121 TSEADIVIAAAGVANL----VRGSWLKP---G--AVVLDVGTCPV  156 (216)
Q Consensus       121 ~~~ADIVIsatg~p~~----i~~~~i~~---g--~vViDvg~~~~  156 (216)
                      ..+.|++|++.+...+    ...+-+++   +  ...+.+.-+|+
T Consensus        85 ~~~~Dili~~Aav~d~~p~~~~~~KIkk~~~~~~~l~l~L~~~pd  129 (226)
T 1u7z_A           85 VQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNPD  129 (226)
T ss_dssp             GGGCSEEEECCBCCSEEESSCCSSCC-------CEEEEEEEECCC
T ss_pred             cCCCCEEEECCcccCCCCccCChHHhccccccCCceEEEEeecHH
Confidence            5678999999886442    33445666   2  46777777764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.25  E-value=0.00047  Score=57.35  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC----EEEEEeCCC---------------CCHHhhccCCCEEEEecCCCCc---cc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA----TVSIVHALT---------------KNPEQITSEADIVIAAAGVANL---VR  138 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga----~Vti~~~~t---------------~~l~~~~~~ADIVIsatg~p~~---i~  138 (216)
                      +++.|||.|.+ |.+++..|.+.|.    +|++++|+.               .+..+.++++|+||.++.....   +.
T Consensus         3 ~~i~iIG~G~m-G~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~~~~~v~~   81 (247)
T 3gt0_A            3 KQIGFIGCGNM-GMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPDLYASIIN   81 (247)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTTTHHHHC-
T ss_pred             CeEEEECccHH-HHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHHHHHHHHH
Confidence            57999999886 9999999999997    899998762               3556778889999999943221   21


Q ss_pred             --CCcccCCcEEEEe
Q 027976          139 --GSWLKPGAVVLDV  151 (216)
Q Consensus       139 --~~~i~~g~vViDv  151 (216)
                        ..+++++.+|+.+
T Consensus        82 ~l~~~l~~~~~vvs~   96 (247)
T 3gt0_A           82 EIKEIIKNDAIIVTI   96 (247)
T ss_dssp             --CCSSCTTCEEEEC
T ss_pred             HHHhhcCCCCEEEEe
Confidence              1345677777743

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.24  E-value=0.00025  Score=52.96  Aligned_cols=56  Identities=25%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------C---HHhh-ccCCCEEEEecCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------N---PEQI-TSEADIVIAAAGVA  134 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~---l~~~-~~~ADIVIsatg~p  134 (216)
                      +++++++|+|+|. +|+.++..|.+.|++|+++.++.+                  +   +.+. ++++|+||.+++.+
T Consensus         4 ~~~~~v~I~G~G~-iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            4 IKNKQFAVIGLGR-FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             --CCSEEEECCSH-HHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CcCCcEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            4678999999966 599999999999999888866421                  1   1222 56789999888864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.22  E-value=0.00057  Score=62.93  Aligned_cols=77  Identities=16%  Similarity=0.254  Sum_probs=57.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------------CCHHhhccC---CCEEEEecCCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSE---ADIVIAAAGVAN  135 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~~~---ADIVIsatg~p~  135 (216)
                      ..+-++|.|||.|.+ |.+++..|++.|.+|++.+|+.                  .++.+.+++   +|+||.+++.+.
T Consensus        12 ~~~~~~IgvIGlG~M-G~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~   90 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVM-GRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGA   90 (480)
T ss_dssp             ---CBSEEEECCSHH-HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSS
T ss_pred             ccCCCeEEEEccHHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHH
Confidence            456788999999876 9999999999999999998762                  234455655   999999998753


Q ss_pred             c----cc--CCcccCCcEEEEeeeC
Q 027976          136 L----VR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       136 ~----i~--~~~i~~g~vViDvg~~  154 (216)
                      .    +.  ...++++.+|||++..
T Consensus        91 ~v~~vl~~l~~~l~~g~iIId~s~g  115 (480)
T 2zyd_A           91 GTDAAIDSLKPYLDKGDIIIDGGNT  115 (480)
T ss_dssp             HHHHHHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHHHHHhhcCCCCEEEECCCC
Confidence            2    21  1346789999998754

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.22  E-value=0.00032  Score=59.17  Aligned_cols=73  Identities=18%  Similarity=0.244  Sum_probs=55.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC----------------CCHHhhcc-CCCEEEEecCCCCc---cc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------KNPEQITS-EADIVIAAAGVANL---VR  138 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t----------------~~l~~~~~-~ADIVIsatg~p~~---i~  138 (216)
                      ++|.|||.|.+ |.+++..|.+.|.  +|++++++.                .++.+.++ ++|+||.+++....   +.
T Consensus         2 ~~I~iIG~G~m-G~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (281)
T ss_dssp             CEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             cEEEEEecCHH-HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHHHH
Confidence            47999999875 9999999999997  899887642                24556788 99999999985431   11


Q ss_pred             --CCcccCCcEEEEeeeC
Q 027976          139 --GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       139 --~~~i~~g~vViDvg~~  154 (216)
                        ..+++++.+|+|++..
T Consensus        81 ~l~~~l~~~~iv~~~~~~   98 (281)
T 2g5c_A           81 KLSYILSEDATVTDQGSV   98 (281)
T ss_dssp             HHHHHSCTTCEEEECCSC
T ss_pred             HHHhhCCCCcEEEECCCC
Confidence              1346788999998643

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.21  E-value=0.00055  Score=53.91  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhccCCCEEEEecCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~p  134 (216)
                      +++++|+|++|.+|+.++..|+++|++|+++.|+..                     ++.+.++++|+||+.+|..
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            479999999888899999999999999998876521                     2446677889999888743

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.21  E-value=0.00026  Score=61.48  Aligned_cols=96  Identities=17%  Similarity=0.049  Sum_probs=66.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------CHHh-
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQ-  119 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~-  119 (216)
                      +|+.+..+...+.+..---.|++|+|+|+|+.+|..++.++...|++|+.+.++.+                   ++.+ 
T Consensus       125 l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~  204 (340)
T 3gms_A          125 MYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYET  204 (340)
T ss_dssp             SSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHH
T ss_pred             hcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHH
Confidence            35566666666644433357999999999977899999999999999888865432                   2222 


Q ss_pred             ---hc--cCCCEEEEecCCCCcc-cCCcccCCcEEEEeeeCC
Q 027976          120 ---IT--SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       120 ---~~--~~ADIVIsatg~p~~i-~~~~i~~g~vViDvg~~~  155 (216)
                         ..  +..|++|+++|.+... ..+.++++-.++.+|...
T Consensus       205 ~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~  246 (340)
T 3gms_A          205 VMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLS  246 (340)
T ss_dssp             HHHHTTTSCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTT
T ss_pred             HHHHhCCCCCcEEEECCCChhHHHHHHHhcCCCEEEEEeecC
Confidence               12  2579999999866431 225678888888888653

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.21  E-value=0.00022  Score=59.67  Aligned_cols=75  Identities=15%  Similarity=0.170  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCC---------------CCHHhhccCCCEEEEecCCCCc---cc
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT---------------KNPEQITSEADIVIAAAGVANL---VR  138 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t---------------~~l~~~~~~ADIVIsatg~p~~---i~  138 (216)
                      +.+.++.|||+|.+ |..++..|.+.|.+ |++++++.               .++.+.++++|+||.+++....   +.
T Consensus         8 ~~~m~i~iiG~G~m-G~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~   86 (266)
T 3d1l_A            8 IEDTPIVLIGAGNL-ATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQ   86 (266)
T ss_dssp             GGGCCEEEECCSHH-HHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCHH-HHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHHHHH
Confidence            34568999999875 99999999999988 88887752               2455667889999999985431   11


Q ss_pred             --CCcccCCcEEEEeee
Q 027976          139 --GSWLKPGAVVLDVGT  153 (216)
Q Consensus       139 --~~~i~~g~vViDvg~  153 (216)
                        ...++++.+|+|+..
T Consensus        87 ~l~~~~~~~~ivv~~s~  103 (266)
T 3d1l_A           87 GIVEGKREEALMVHTAG  103 (266)
T ss_dssp             HHHTTCCTTCEEEECCT
T ss_pred             HHHhhcCCCcEEEECCC
Confidence              134568899999854

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.29  E-value=5.1e-05  Score=61.96  Aligned_cols=76  Identities=14%  Similarity=0.138  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------CHHhhccCCCEEEEecCCCCc---ccCCcc
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGVANL---VRGSWL  142 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~ADIVIsatg~p~~---i~~~~i  142 (216)
                      +.++++.|||.|.+ |.+++..|.+.|.+|++++|+..            ++.+.++++|+||.+++....   +.-...
T Consensus        17 ~~~~~I~iIG~G~m-G~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~~~~~v~~l~~~   95 (201)
T 2yjz_A           17 EKQGVVCIFGTGDF-GKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHREHYDFLAELADS   95 (201)
Confidence            45678999999876 99999999999989988877532            234567789999999985431   211113


Q ss_pred             cCCcEEEEeeeC
Q 027976          143 KPGAVVLDVGTC  154 (216)
Q Consensus       143 ~~g~vViDvg~~  154 (216)
                      .++.+|||+.-.
T Consensus        96 ~~~~ivI~~~~G  107 (201)
T 2yjz_A           96 LKGRVLIDVSNN  107 (201)
Confidence            467899998743

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.18  E-value=0.00073  Score=53.90  Aligned_cols=53  Identities=15%  Similarity=0.143  Sum_probs=43.9

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH------------------HhhccCCCEEEEecCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP------------------EQITSEADIVIAAAGVA  134 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l------------------~~~~~~ADIVIsatg~p  134 (216)
                      +|+|+|++|.+|+.++..|+++|++|+++.|+...+                  .+.+..+|+||+..|.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence            699999988889999999999999999998763211                  15678899999998864

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.18  E-value=0.0014  Score=55.56  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=36.3

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++|+||.++|-|++.-+|+++|..|+++|++|.++.++.
T Consensus         2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~   41 (258)
T 4gkb_A            2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHA   41 (258)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCc
Confidence            3679999999999998889999999999999999998763

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.16  E-value=0.0011  Score=57.68  Aligned_cols=94  Identities=19%  Similarity=0.121  Sum_probs=66.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHh---------------hccCC
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQ---------------ITSEA  124 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~---------------~~~~A  124 (216)
                      +||....++..|++.++ -.|++|+|+|+|+ +|..++.++...|++|+.+.++.+.++.               ..+..
T Consensus       158 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~  235 (348)
T 3two_A          158 LLCAGITTYSPLKFSKV-TKGTKVGVAGFGG-LGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEEL  235 (348)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEESCSH-HHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCE
T ss_pred             hhhhHHHHHHHHHhcCC-CCCCEEEEECCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCC
Confidence            56666666777776643 4699999999965 6999999999999998887765433221               11147


Q ss_pred             CEEEEecCCCCcc--cCCcccCCcEEEEeeeCC
Q 027976          125 DIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       125 DIVIsatg~p~~i--~~~~i~~g~vViDvg~~~  155 (216)
                      |+||.++|.+..+  .-+.++++-.++.+|...
T Consensus       236 D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          236 DFIISTIPTHYDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             EEEEECCCSCCCHHHHHTTEEEEEEEEECCCCC
T ss_pred             CEEEECCCcHHHHHHHHHHHhcCCEEEEECCCC
Confidence            8999999977432  235678887788887654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.16  E-value=0.0012  Score=58.69  Aligned_cols=94  Identities=17%  Similarity=0.218  Sum_probs=65.7

Q ss_pred             CCCcHHHHHHHH----HHhCC-CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhc
Q 027976           60 IPCTPKGCIELL----IRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQIT  121 (216)
Q Consensus        60 ~p~Ta~g~~~~L----~~~~~-~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~  121 (216)
                      .+.|++|+...+    ++.+. +++||+|.|+|.|.+ |+.++..|...|++|.+++++..             +..+.+
T Consensus       150 ~~aTg~Gv~~~~~~~~~~~G~~~L~GktV~I~G~GnV-G~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell  228 (355)
T 1c1d_A          150 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAV-GGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVL  228 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGG
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhh
Confidence            457999876654    45677 899999999999875 99999999999999887765421             123444


Q ss_pred             c-CCCEEEEecCCCCcccCCccc--CCcEEEEeeeCC
Q 027976          122 S-EADIVIAAAGVANLVRGSWLK--PGAVVLDVGTCP  155 (216)
Q Consensus       122 ~-~ADIVIsatg~p~~i~~~~i~--~g~vViDvg~~~  155 (216)
                      . ++||++.+ ..++.|+.+.++  +..+|++.+-.|
T Consensus       229 ~~~~DIliP~-A~~~~I~~~~~~~lk~~iVie~AN~p  264 (355)
T 1c1d_A          229 STPCDVFAPC-AMGGVITTEVARTLDCSVVAGAANNV  264 (355)
T ss_dssp             GCCCSEEEEC-SCSCCBCHHHHHHCCCSEECCSCTTC
T ss_pred             cCccceecHh-HHHhhcCHHHHhhCCCCEEEECCCCC
Confidence            4 78998854 345556654332  246777766333

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.15  E-value=0.0008  Score=55.99  Aligned_cols=70  Identities=13%  Similarity=0.135  Sum_probs=51.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------CCHHhhccCCCEEEEecCCCCcccC--Cccc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITSEADIVIAAAGVANLVRG--SWLK  143 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------~~l~~~~~~ADIVIsatg~p~~i~~--~~i~  143 (216)
                      .++.|||.|.+ |++++..|.+.|..|++++++.               .++.+.++++|+||.+++ +..+..  +.++
T Consensus         4 m~i~iiG~G~m-G~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~~~l~   81 (259)
T 2ahr_A            4 MKIGIIGVGKM-ASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKPLH   81 (259)
T ss_dssp             CEEEEECCSHH-HHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTTSC
T ss_pred             cEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHHHHhc
Confidence            47999999875 9999999999998899998752               245567789999999998 432110  1134


Q ss_pred             CCcEEEEee
Q 027976          144 PGAVVLDVG  152 (216)
Q Consensus       144 ~g~vViDvg  152 (216)
                      ++.+++|+.
T Consensus        82 ~~~~vv~~~   90 (259)
T 2ahr_A           82 FKQPIISMA   90 (259)
T ss_dssp             CCSCEEECC
T ss_pred             cCCEEEEeC
Confidence            667777773

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.14  E-value=0.00059  Score=57.14  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=33.1

Q ss_pred             CCCCCCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+||.++|.|++   |+ |+++|..|+++|++|.++.|+
T Consensus         2 ~~l~gK~alVTGaa~~~GI-G~aiA~~la~~Ga~Vvi~~r~   41 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSI-AFGVAKVLDQLGAKLVFTYRK   41 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCH-HHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEECC
Confidence            47899999999975   55 999999999999999999776

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=97.14  E-value=0.00092  Score=62.40  Aligned_cols=92  Identities=15%  Similarity=0.244  Sum_probs=75.7

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh----CCC-------EEEEEeCC------------------
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL------------------  113 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~------------------  113 (216)
                      |..|++..|+-.+.++++.++++.|+|.+ |.++|.+|..    .|.       ++++|+++                  
T Consensus       265 ~lAgllnAlki~gk~l~d~riv~~GAGaA-g~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~l~~~k~~~A  343 (555)
T 1gq2_A          265 AVAGLLAALRITKNRLSDHTVLFQGAGEA-ALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFA  343 (555)
T ss_dssp             HHHHHHHHHHHHTSCGGGCCEEEECCSHH-HHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGC
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCCchHHHHHHH
Confidence            45678889999999999999999999988 9999999887    673       59999664                  


Q ss_pred             -----CCCHHhhcc--CCCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976          114 -----TKNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  156 (216)
Q Consensus       114 -----t~~l~~~~~--~ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~  156 (216)
                           ..+|.+.++  ++|++|-..+.|+.+++++++      +.-+|+=++ ||.
T Consensus       344 ~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  398 (555)
T 1gq2_A          344 HEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALS-NPT  398 (555)
T ss_dssp             BSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             hhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                 125788888  499999988888889999985      567888877 554

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=97.14  E-value=0.00083  Score=57.64  Aligned_cols=59  Identities=15%  Similarity=0.071  Sum_probs=45.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------CHHhhccCCCEEEEecCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~~ADIVIsatg~p  134 (216)
                      .+.++|+|+|.|++|.+|+.++..|+++|++|+++.|...               .+.+.+++.|+||...+..
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~   88 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM   88 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence            4578999999999999999999999999999999877531               2457788999999887743

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.10  E-value=0.0013  Score=57.53  Aligned_cols=95  Identities=18%  Similarity=0.212  Sum_probs=66.1

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH---------------------
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP---------------------  117 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l---------------------  117 (216)
                      .+||....++..+++.+....|++|+|+|+|+ +|..++.++...|++|+++.++.+.+                     
T Consensus       160 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~  238 (357)
T 2cf5_A          160 PLLCAGVTVYSPLSHFGLKQPGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKM  238 (357)
T ss_dssp             GGGTHHHHHHHHHHHTSTTSTTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHH
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHH
Confidence            35665556677777766544799999999866 69999998888999988776543211                     


Q ss_pred             HhhccCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          118 EQITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       118 ~~~~~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                      .+....+|+||.++|.+..+  .-+.++++-.++.++..
T Consensus       239 ~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T 2cf5_A          239 SELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVI  277 (357)
T ss_dssp             HHSTTTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCC
T ss_pred             HHhcCCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCC
Confidence            12223579999999876432  23567777777788764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.10  E-value=0.00095  Score=57.09  Aligned_cols=70  Identities=17%  Similarity=0.235  Sum_probs=51.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------------------------------CCH
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------------------------KNP  117 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------------------------------~~l  117 (216)
                      ++|.|||+|.+ |.++|..|++.|.+|++++++.                                           .++
T Consensus        16 ~~I~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~   94 (302)
T 1f0y_A           16 KHVTVIGGGLM-GAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   94 (302)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence            68999999875 9999999999999999997652                                           123


Q ss_pred             HhhccCCCEEEEecCCCC-----ccc--CCcccCCcEEEEe
Q 027976          118 EQITSEADIVIAAAGVAN-----LVR--GSWLKPGAVVLDV  151 (216)
Q Consensus       118 ~~~~~~ADIVIsatg~p~-----~i~--~~~i~~g~vViDv  151 (216)
                      .+.+++||+||.+++...     .+.  ...++++++++..
T Consensus        95 ~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~  135 (302)
T 1f0y_A           95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASN  135 (302)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEEC
T ss_pred             HHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEC
Confidence            346789999999997532     111  2345677777654

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=97.10  E-value=0.00084  Score=63.12  Aligned_cols=92  Identities=8%  Similarity=0.117  Sum_probs=75.8

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh----CCC-------EEEEEeCC------------------
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL------------------  113 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~------------------  113 (216)
                      +..|++..|+-.+.++++.++++.|+|.+ |.++|.+|..    .|.       ++++|+++                  
T Consensus       303 ~lAgllnAlki~gk~l~d~riv~~GAGaA-gigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~~A  381 (605)
T 1o0s_A          303 IVAGLLTCTRVTKKLVSQEKYLFFGAGAA-STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFA  381 (605)
T ss_dssp             HHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTC
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHHHHH
Confidence            45678889999999999999999999988 9999999887    784       49999664                  


Q ss_pred             -----CCCHHhhcc--CCCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976          114 -----TKNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  156 (216)
Q Consensus       114 -----t~~l~~~~~--~ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~  156 (216)
                           ..+|.+.++  ++|++|-..+.|+.+++++++      +.-+|+=++ ||.
T Consensus       382 ~~~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  436 (605)
T 1o0s_A          382 KDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALS-NPT  436 (605)
T ss_dssp             BSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             hhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                 125888888  499999988888889999985      567888877 554

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.10  E-value=0.00068  Score=57.46  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+||.++|-|++.=+|+++|..|+++|++|.++.++
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~   40 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELL   40 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            37899999999999888999999999999999999876

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.09  E-value=0.00081  Score=54.15  Aligned_cols=53  Identities=26%  Similarity=0.208  Sum_probs=45.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~~~ADIVIsatg~  133 (216)
                      ++|+|.|++|.+|+.++..|+++|++|+++.|...                    ++.+.+++.|+||+++|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence            68999999999999999999999999999977521                    245678889999988874

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.09  E-value=0.00072  Score=54.52  Aligned_cols=54  Identities=15%  Similarity=0.189  Sum_probs=44.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHH-hCCCEEEEEeCCCC------------------------CHHhhccCCCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALTK------------------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~-~~ga~Vti~~~~t~------------------------~l~~~~~~ADIVIsatg~p  134 (216)
                      |+++|.|++|-+|+.++..|+ ++|++|+++.|+..                        ++.+.++++|+||++.|..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~   84 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES   84 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence            679999998888999999999 89999999877532                        2345678899999988864

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.08  E-value=0.0014  Score=55.21  Aligned_cols=56  Identities=18%  Similarity=0.260  Sum_probs=46.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------------CHHhhccCCCEEEEecCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------~l~~~~~~ADIVIsatg~  133 (216)
                      ++||.++|-|++.=+|++++..|+++|++|.++.++.+                        .+.+...+-|++|+..|.
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            58999999999988899999999999999999987632                        123455667999988884

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.08  E-value=0.00063  Score=57.18  Aligned_cols=70  Identities=21%  Similarity=0.220  Sum_probs=53.2

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------CCHHhhccCCCEEEEecCCCC---ccc--CC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR--GS  140 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~---~i~--~~  140 (216)
                      ++.|||.|.+ |.+++..|.+.|.+|++++++.                .++.+. +++|+||.+++...   .+.  ..
T Consensus         2 ~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~   79 (279)
T 2f1k_A            2 KIGVVGLGLI-GASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIP   79 (279)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHGG
T ss_pred             EEEEEcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHHHHHHh
Confidence            6899999875 9999999999999999997652                234455 78999999998532   121  23


Q ss_pred             cccCCcEEEEeee
Q 027976          141 WLKPGAVVLDVGT  153 (216)
Q Consensus       141 ~i~~g~vViDvg~  153 (216)
                      .++++.+|+|++.
T Consensus        80 ~~~~~~~vv~~~~   92 (279)
T 2f1k_A           80 HLSPTAIVTDVAS   92 (279)
T ss_dssp             GSCTTCEEEECCS
T ss_pred             hCCCCCEEEECCC
Confidence            5678899999843

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.07  E-value=0.00065  Score=58.91  Aligned_cols=71  Identities=8%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCC----CEEEEEeCCCC----------------CHHhhccCCCEEEEecCCCCccc-
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALTK----------------NPEQITSEADIVIAAAGVANLVR-  138 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~g----a~Vti~~~~t~----------------~l~~~~~~ADIVIsatg~p~~i~-  138 (216)
                      ..+|.|||.|.+ |.+++..|.+.|    .+|++++|+.+                +..+.++++|+||.+++ |..+. 
T Consensus        22 ~mkI~iIG~G~m-G~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~   99 (322)
T 2izz_A           22 SMSVGFIGAGQL-AFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPF   99 (322)
T ss_dssp             CCCEEEESCSHH-HHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHH
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHH
Confidence            357999999875 999999999999    67999988642                33456778999999998 33211 


Q ss_pred             -----CCcccCCcEEEEee
Q 027976          139 -----GSWLKPGAVVLDVG  152 (216)
Q Consensus       139 -----~~~i~~g~vViDvg  152 (216)
                           ...++++.+|+|+.
T Consensus       100 vl~~l~~~l~~~~ivvs~s  118 (322)
T 2izz_A          100 ILDEIGADIEDRHIVVSCA  118 (322)
T ss_dssp             HHHHHGGGCCTTCEEEECC
T ss_pred             HHHHHHhhcCCCCEEEEeC
Confidence                 13456788999984

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.07  E-value=0.0017  Score=53.88  Aligned_cols=59  Identities=25%  Similarity=0.307  Sum_probs=45.5

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------CCHHh---hccCCCEEEEecCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQ---ITSEADIVIAAAGV  133 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~l~~---~~~~ADIVIsatg~  133 (216)
                      ..+++||+++|.|+++-+|+.++..|+++|++|.++.|+.                +++.+   .+...|+||+..|.
T Consensus        14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~iD~lv~~Ag~   91 (249)
T 1o5i_A           14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG   91 (249)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred             HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCeEEEeeHHHHHHHHHHHhcCCCEEEECCCC
Confidence            3568999999999999899999999999999999887752                12222   23367999988774

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.06  E-value=0.00081  Score=51.83  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ....+++++|+|+|. +|+.++..|...|++|+++.++
T Consensus        15 ~~~~~~~v~IiG~G~-iG~~la~~L~~~g~~V~vid~~   51 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGR-LGSLIANLASSSGHSVVVVDKN   51 (155)
T ss_dssp             --CCCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCcEEEECCCH-HHHHHHHHHHhCCCeEEEEECC
Confidence            456789999999976 4999999999999999999764

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.05  E-value=0.0017  Score=53.56  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   46 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN   46 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence            357899999999999999999999999999999987753

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.05  E-value=0.00073  Score=58.84  Aligned_cols=95  Identities=19%  Similarity=0.151  Sum_probs=60.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------CHHh--
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NPEQ--  119 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l~~--  119 (216)
                      +|+....+...|.+..---.|++|+|+|+++.+|..++.++...|++|+.+.++.+                  ++.+  
T Consensus       140 l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v  219 (342)
T 4eye_A          140 LIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAV  219 (342)
T ss_dssp             HTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHH
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHH
Confidence            34444445566644433357999999999666799999999999999888766421                  1211  


Q ss_pred             --hc--cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          120 --IT--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       120 --~~--~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                        ..  +..|++|+++|.+.+ -.-+.++++-.++.+|..
T Consensus       220 ~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~  259 (342)
T 4eye_A          220 REATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFA  259 (342)
T ss_dssp             HHHTTTSCEEEEEESCC--CHHHHHHTEEEEEEEEEC---
T ss_pred             HHHhCCCCceEEEECCchhHHHHHHHhhcCCCEEEEEEcc
Confidence              22  248999999997643 223456777777788754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.05  E-value=0.00071  Score=51.02  Aligned_cols=55  Identities=15%  Similarity=0.063  Sum_probs=42.0

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------C---HHh-hccCCCEEEEecCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------N---PEQ-ITSEADIVIAAAGVA  134 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~---l~~-~~~~ADIVIsatg~p  134 (216)
                      +.++++|+|+|. +|+.++..|.++|.+|+++.++.+                  +   +.+ .++++|+||.+++..
T Consensus         5 ~~~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~   81 (141)
T 3llv_A            5 GRYEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDD   81 (141)
T ss_dssp             -CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCH
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCH
Confidence            467899999987 599999999999999999976521                  1   112 246789999998843

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.04  E-value=0.00077  Score=57.47  Aligned_cols=92  Identities=13%  Similarity=0.129  Sum_probs=60.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHHhh
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQI  120 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~  120 (216)
                      |+....++..|.+.. --.|++|+|+|++|.+|..++.++...|++|+.+.++.+                    ++.+.
T Consensus       108 ~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~  186 (302)
T 1iz0_A          108 PVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKA  186 (302)
T ss_dssp             HHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHH
T ss_pred             hhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHH
Confidence            333344556666555 457999999999666799999999999999888876421                    11222


Q ss_pred             ccCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          121 TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       121 ~~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      ++..|++|+ +|.+.+ -.-+.++++..++.++..
T Consensus       187 ~~~~d~vid-~g~~~~~~~~~~l~~~G~~v~~g~~  220 (302)
T 1iz0_A          187 WGGLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAA  220 (302)
T ss_dssp             TTSEEEEEE-CSCTTHHHHHTTEEEEEEEEEC---
T ss_pred             hcCceEEEE-CCHHHHHHHHHhhccCCEEEEEeCC
Confidence            356899999 887432 123556777677777754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.03  E-value=0.0015  Score=59.54  Aligned_cols=77  Identities=26%  Similarity=0.341  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------CCHHh---------------hccCCCEE
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQ---------------ITSEADIV  127 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------~~l~~---------------~~~~ADIV  127 (216)
                      -.|.+.+|||.|-. |.|+|..|++.|.+|+.++++.               +.+.+               .+++||+|
T Consensus         9 ~~~~~~~ViGlGyv-Glp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvv   87 (431)
T 3ojo_A            9 HHGSKLTVVGLGYI-GLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVF   87 (431)
T ss_dssp             ---CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred             ccCCccEEEeeCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence            36889999999875 9999999999999999997762               11211               14579999


Q ss_pred             EEecCCCCccc-----------------CCcccCCcEEEEeeeCC
Q 027976          128 IAAAGVANLVR-----------------GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       128 Isatg~p~~i~-----------------~~~i~~g~vViDvg~~~  155 (216)
                      |.++|.|.-..                 .+.++++.+|||.+.-+
T Consensus        88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~  132 (431)
T 3ojo_A           88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIA  132 (431)
T ss_dssp             EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCC
T ss_pred             EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCC
Confidence            99999774111                 13457888888876543

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.02  E-value=0.0018  Score=54.27  Aligned_cols=39  Identities=31%  Similarity=0.377  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPE   45 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            368899999999988889999999999999999998764

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=97.02  E-value=0.0016  Score=55.82  Aligned_cols=58  Identities=9%  Similarity=0.056  Sum_probs=47.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHHhhcc--CCCEEEEe
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITS--EADIVIAA  130 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------~l~~~~~--~ADIVIsa  130 (216)
                      .++++++|+|.|++|.+|+.++..|+++|++|+++.|...                       ++.+.++  ..|+||+.
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~   95 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS   95 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence            4578999999999888999999999999999998876321                       1345566  89999988


Q ss_pred             cCC
Q 027976          131 AGV  133 (216)
Q Consensus       131 tg~  133 (216)
                      .|.
T Consensus        96 A~~   98 (330)
T 2pzm_A           96 AAA   98 (330)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            874

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.02  E-value=0.00088  Score=53.93  Aligned_cols=53  Identities=13%  Similarity=0.145  Sum_probs=43.6

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHHhhccCCCEEEEecCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~~~ADIVIsatg~p  134 (216)
                      +|+|.|++|.+|+.++..|+++|++|+++.|+..                    ++.+.+++.|+||+.+|..
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            6999999999999999999999999999977521                    2445677789999888753

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.01  E-value=0.0011  Score=53.79  Aligned_cols=56  Identities=11%  Similarity=-0.004  Sum_probs=46.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhC--CCEEEEEeCCC--------------------CCHHhhccCCCEEEEecCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT--------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t--------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      .++++++|.|++|.+|+.++..|+++  |++|+++.|+.                    .++.+.+++.|+||+.+|.
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            46899999999999999999999999  78999887741                    1245677889999988874

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.01  E-value=0.00076  Score=58.18  Aligned_cols=95  Identities=13%  Similarity=0.061  Sum_probs=63.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHh--
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQ--  119 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~--  119 (216)
                      |+.+..+...+.+..---.|++|+|+|+++.+|..++.++...|++|+.+.++.                   .++.+  
T Consensus       122 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~  201 (325)
T 3jyn_A          122 MLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRV  201 (325)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHH
T ss_pred             hhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHH
Confidence            334444455555443334699999999666679999999999999988876541                   12222  


Q ss_pred             --hc--cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeCC
Q 027976          120 --IT--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       120 --~~--~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~~  155 (216)
                        ..  +..|++|+++|.+.+ -.-+.++++..++.++...
T Consensus       202 ~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~  242 (325)
T 3jyn_A          202 LELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNAS  242 (325)
T ss_dssp             HHHTTTCCEEEEEESSCGGGHHHHHTTEEEEEEEEECCCTT
T ss_pred             HHHhCCCCceEEEECCChHHHHHHHHHhcCCCEEEEEecCC
Confidence              22  258999999997433 2335678888888888653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.01  E-value=0.00056  Score=53.98  Aligned_cols=58  Identities=16%  Similarity=0.130  Sum_probs=45.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCCC------------------C---HHhh--ccCCCEEEEec
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTK------------------N---PEQI--TSEADIVIAAA  131 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t~------------------~---l~~~--~~~ADIVIsat  131 (216)
                      .++.+++++|+|.|.. |+.++..|.+. |++|+++.++.+                  +   +.+.  ++++|+||.++
T Consensus        35 ~~~~~~~v~IiG~G~~-G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~  113 (183)
T 3c85_A           35 INPGHAQVLILGMGRI-GTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM  113 (183)
T ss_dssp             BCCTTCSEEEECCSHH-HHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred             cCCCCCcEEEECCCHH-HHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence            4567889999999775 99999999998 999999976521                  1   2333  67889999988


Q ss_pred             CCC
Q 027976          132 GVA  134 (216)
Q Consensus       132 g~p  134 (216)
                      +.+
T Consensus       114 ~~~  116 (183)
T 3c85_A          114 PHH  116 (183)
T ss_dssp             SSH
T ss_pred             CCh
Confidence            864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.01  E-value=0.0017  Score=55.81  Aligned_cols=69  Identities=17%  Similarity=0.162  Sum_probs=53.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------------
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------  115 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------  115 (216)
                      +|.++.-+.....     +++++|+|.|++|.+|+.++..|+++|.+|+.+.|...                        
T Consensus        10 ~~~~~~~~~~~~~-----~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (351)
T 3ruf_A           10 YMSRYEEITQQLI-----FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFI   84 (351)
T ss_dssp             CCHHHHHHHHHHH-----HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEE
T ss_pred             HHHHHhhHHhhCC-----CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEE
Confidence            5556666555442     46899999999999999999999999999999876321                        


Q ss_pred             --------CHHhhccCCCEEEEecCC
Q 027976          116 --------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus       116 --------~l~~~~~~ADIVIsatg~  133 (216)
                              ++.+.++++|+||...+.
T Consensus        85 ~~Dl~d~~~~~~~~~~~d~Vih~A~~  110 (351)
T 3ruf_A           85 EGDIRDLTTCEQVMKGVDHVLHQAAL  110 (351)
T ss_dssp             ECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             EccCCCHHHHHHHhcCCCEEEECCcc
Confidence                    245667789999988875

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.99  E-value=0.0011  Score=56.94  Aligned_cols=68  Identities=15%  Similarity=0.181  Sum_probs=53.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeC--CC-------------------------C--CHHhhccCCCEEEEecC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA--LT-------------------------K--NPEQITSEADIVIAAAG  132 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~--~t-------------------------~--~l~~~~~~ADIVIsatg  132 (216)
                      ++.|||+|.+ |.+++..|++.|.+|+++++  +.                         .  ++.+.++++|+||.+++
T Consensus         2 ~I~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            2 IVSILGAGAM-GSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             EEEEESCCHH-HHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECcCHH-HHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            6899999875 99999999999999999988  41                         0  33455778999999998


Q ss_pred             CCCc------ccCCcccCCcEEEEee
Q 027976          133 VANL------VRGSWLKPGAVVLDVG  152 (216)
Q Consensus       133 ~p~~------i~~~~i~~g~vViDvg  152 (216)
                      .+..      +. . ++++.+|+|+.
T Consensus        81 ~~~~~~v~~~i~-~-l~~~~~vv~~~  104 (335)
T 1txg_A           81 TDGVLPVMSRIL-P-YLKDQYIVLIS  104 (335)
T ss_dssp             GGGHHHHHHHHT-T-TCCSCEEEECC
T ss_pred             hHHHHHHHHHHh-c-CCCCCEEEEEc
Confidence            6541      23 3 77889999984

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.98  E-value=0.003  Score=55.55  Aligned_cols=94  Identities=18%  Similarity=0.159  Sum_probs=59.1

Q ss_pred             CCcHHHHHHHHHHhCC----CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------------CCHH
Q 027976           61 PCTPKGCIELLIRSGV----EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPE  118 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~----~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~  118 (216)
                      |+....++..|.+..-    .-.|++|+|.|++|.+|..++.++...|++|+.+.+..                  .++.
T Consensus       161 ~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~  240 (375)
T 2vn8_A          161 PYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVE  240 (375)
T ss_dssp             HHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHH
T ss_pred             HHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHH
Confidence            3333344555543322    34799999999756679999999999999976664321                  1222


Q ss_pred             hhc---cCCCEEEEecCCC-Ccc--cCCcccCCcEEEEeeeC
Q 027976          119 QIT---SEADIVIAAAGVA-NLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       119 ~~~---~~ADIVIsatg~p-~~i--~~~~i~~g~vViDvg~~  154 (216)
                      +.+   ...|++|.++|.+ ..+  .-+.++++-.++.++..
T Consensus       241 ~~~~~~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          241 EQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             HHHHTSCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCS
T ss_pred             HHHhhcCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCC
Confidence            222   3478888888876 212  22456777777777643

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.98  E-value=0.0012  Score=60.28  Aligned_cols=72  Identities=25%  Similarity=0.304  Sum_probs=53.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHHhhccCCCE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI  126 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------------~~l~~~~~~ADI  126 (216)
                      .+|.|||.|. +|.++|..|++.|.+|++++++.                                  .++.+.+++||+
T Consensus         3 mkI~VIG~G~-vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDv   81 (450)
T 3gg2_A            3 LDIAVVGIGY-VGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADI   81 (450)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSE
T ss_pred             CEEEEECcCH-HHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCE
Confidence            4799999987 59999999999999999997641                                  134456889999


Q ss_pred             EEEecCCCC---------ccc------CCcccCCcEEEEeee
Q 027976          127 VIAAAGVAN---------LVR------GSWLKPGAVVLDVGT  153 (216)
Q Consensus       127 VIsatg~p~---------~i~------~~~i~~g~vViDvg~  153 (216)
                      ||.+++.|.         .+.      ...++++.+|++.+.
T Consensus        82 ViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           82 IFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence            999998772         110      123567788877664

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.97  E-value=0.00075  Score=58.35  Aligned_cols=96  Identities=15%  Similarity=0.096  Sum_probs=64.3

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHHh
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQ  119 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~  119 (216)
                      +|+....++..|.+..---.|++|+|+|+++.+|..++.++...|++|+.+.++.+                    ++.+
T Consensus       130 l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  209 (336)
T 4b7c_A          130 LGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAA  209 (336)
T ss_dssp             TSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHH
T ss_pred             cccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHH
Confidence            45455556677744433457999999999666799999999999999888865421                    1212


Q ss_pred             hc-----cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeCC
Q 027976          120 IT-----SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       120 ~~-----~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~~  155 (216)
                      .+     +..|++|+++|.+.+ -.-+.++++-.++.+|...
T Consensus       210 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~~  251 (336)
T 4b7c_A          210 GLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAIS  251 (336)
T ss_dssp             HHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGG
T ss_pred             HHHHhcCCCceEEEECCCcchHHHHHHHHhhCCEEEEEeecc
Confidence            11     237888888886432 2235677777778887543

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.97  E-value=0.0011  Score=61.19  Aligned_cols=75  Identities=16%  Similarity=0.266  Sum_probs=57.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhcc---CCCEEEEecCCCCc-
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITS---EADIVIAAAGVANL-  136 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~---~ADIVIsatg~p~~-  136 (216)
                      -++|.|||.|.+ |.++|..|++.|.+|++++++.                   .++.+.++   ++|+||.+++.+.. 
T Consensus         4 ~~kIgiIGlG~M-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   82 (484)
T 4gwg_A            4 QADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV   82 (484)
T ss_dssp             CBSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHH
T ss_pred             CCEEEEEChhHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHH
Confidence            357999999876 9999999999999999998763                   23444444   59999999987532 


Q ss_pred             ---cc--CCcccCCcEEEEeeeCC
Q 027976          137 ---VR--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       137 ---i~--~~~i~~g~vViDvg~~~  155 (216)
                         +.  ...++++.+|||++...
T Consensus        83 ~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           83 DDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             HHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCC
Confidence               11  23567899999998654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.97  E-value=0.00041  Score=58.86  Aligned_cols=72  Identities=17%  Similarity=0.310  Sum_probs=54.1

Q ss_pred             CeEEEEcC-CchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhccCCCEEEEecCCCCc---cc--CCc
Q 027976           81 KNAVVIGR-SNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVANL---VR--GSW  141 (216)
Q Consensus        81 k~v~ViG~-gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~ADIVIsatg~p~~---i~--~~~  141 (216)
                      .++.|||. |. +|.+++..|.+.|.+|++++++.+             +..+.++++|+||.+++....   +.  ...
T Consensus        12 m~I~iIG~tG~-mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~   90 (286)
T 3c24_A           12 KTVAILGAGGK-MGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNIIEKVAEDIVPR   90 (286)
T ss_dssp             CEEEEETTTSH-HHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCH-HHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchHHHHHHHHHHHh
Confidence            48999999 66 599999999999999999987531             234567899999999985331   11  133


Q ss_pred             ccCCcEEEEeee
Q 027976          142 LKPGAVVLDVGT  153 (216)
Q Consensus       142 i~~g~vViDvg~  153 (216)
                      ++++.+|+|+..
T Consensus        91 l~~~~ivv~~s~  102 (286)
T 3c24_A           91 VRPGTIVLILDA  102 (286)
T ss_dssp             SCTTCEEEESCS
T ss_pred             CCCCCEEEECCC
Confidence            567889999654

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.96  E-value=0.0016  Score=54.69  Aligned_cols=60  Identities=30%  Similarity=0.282  Sum_probs=46.3

Q ss_pred             hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------CHH-------hhccCCCEEEE
Q 027976           74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPE-------QITSEADIVIA  129 (216)
Q Consensus        74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~l~-------~~~~~ADIVIs  129 (216)
                      ...+++||+++|.|+++-+|++++..|+++|++|.++.++..                 ++.       +....-|++|+
T Consensus         8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~   87 (269)
T 3vtz_A            8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVN   87 (269)
T ss_dssp             --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            345789999999999988999999999999999998876531                 111       22236799999


Q ss_pred             ecCC
Q 027976          130 AAGV  133 (216)
Q Consensus       130 atg~  133 (216)
                      ..|.
T Consensus        88 nAg~   91 (269)
T 3vtz_A           88 NAGI   91 (269)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            8885

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.96  E-value=0.0015  Score=59.66  Aligned_cols=73  Identities=22%  Similarity=0.235  Sum_probs=55.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHHhhccCCCE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI  126 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------------~~l~~~~~~ADI  126 (216)
                      -++.|||.|- +|.++|..|++.|.+|+.++++.                                  .++.+.+++||+
T Consensus         9 ~~~~vIGlG~-vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            9 VRIAMIGTGY-VGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             eEEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            4799999987 59999999999999999997652                                  234567889999


Q ss_pred             EEEecCCCC----------ccc------CCcccCCcEEEEeeeC
Q 027976          127 VIAAAGVAN----------LVR------GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       127 VIsatg~p~----------~i~------~~~i~~g~vViDvg~~  154 (216)
                      ||.++|.|.          ++.      ...++++.+||+.+.-
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv  131 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV  131 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred             EEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            999988763          111      1245788888887643

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.96  E-value=0.001  Score=54.40  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC---------------------CCHHhhccCCCEEEEecCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      .-|+|+|.|++|-+|+.++..|+++| ++|+++.|+.                     .++.+.++.+|+||++.|.+.
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            45899999998888999999999999 8999987752                     124567888999998877543

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.95  E-value=0.00079  Score=56.23  Aligned_cols=55  Identities=13%  Similarity=0.143  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------CHHhhccCCCEEEEecCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l~~~~~~ADIVIsatg~  133 (216)
                      ++|+|+|.|+++-+|+.++..|+++|++|+++.|...                  ++.+.+++.|+||+..|.
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~   74 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGGI   74 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence            5789999999888999999999999999998877531                  245678889999988875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.0021  Score=55.89  Aligned_cols=94  Identities=14%  Similarity=0.104  Sum_probs=64.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------CCHHh
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQ  119 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------~~l~~  119 (216)
                      +||....++..+++.++ -.|++|+|+|+++.+|+.++.++...|++|+++.++.                    .++.+
T Consensus       151 l~~~~~ta~~~l~~~~~-~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~  229 (347)
T 2hcy_A          151 ILCAGITVYKALKSANL-MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVG  229 (347)
T ss_dssp             GGTHHHHHHHHHHTTTC-CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHH
T ss_pred             HhhhHHHHHHHHHhcCC-CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHH
Confidence            45554445666765543 4689999999966679999999999999988876542                    12222


Q ss_pred             hcc-----CCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          120 ITS-----EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       120 ~~~-----~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                      .++     ..|++|+++|.+..+  -.+.++++..++.++..
T Consensus       230 ~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          230 AVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCC
T ss_pred             HHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence            222     479999999864332  23556777777777764

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.94  E-value=0.0017  Score=53.20  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCC
Confidence            4689999999999999999999999999999998876

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.94  E-value=0.0012  Score=55.01  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   41 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADID   41 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999998765

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.94  E-value=0.0006  Score=58.97  Aligned_cols=87  Identities=17%  Similarity=0.179  Sum_probs=59.2

Q ss_pred             HHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHh----hc--c
Q 027976           68 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQ----IT--S  122 (216)
Q Consensus        68 ~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~----~~--~  122 (216)
                      ...+.+..---.|++|+|+|+++.+|..++.++...|++|+.+.++.                   .++.+    ..  +
T Consensus       137 ~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~  216 (334)
T 3qwb_A          137 LSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGK  216 (334)
T ss_dssp             HHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             HHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCC
Confidence            34444433334799999999666679999999999999988876641                   22222    22  2


Q ss_pred             CCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          123 EADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       123 ~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      ..|++|+++|.+.+ -.-+.++++-.++.+|..
T Consensus       217 g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~  249 (334)
T 3qwb_A          217 GVDASFDSVGKDTFEISLAALKRKGVFVSFGNA  249 (334)
T ss_dssp             CEEEEEECCGGGGHHHHHHHEEEEEEEEECCCT
T ss_pred             CceEEEECCChHHHHHHHHHhccCCEEEEEcCC
Confidence            47999999986432 223567788788888864

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.93  E-value=0.001  Score=57.21  Aligned_cols=93  Identities=19%  Similarity=0.158  Sum_probs=62.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC------------------CCC-HHhhc
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL------------------TKN-PEQIT  121 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~------------------t~~-l~~~~  121 (216)
                      |+....++..|+..++ -.|++|+|+|+.|.+|..+++++...|++|+.+.+.                  +.+ +.+.+
T Consensus       135 ~~~~~ta~~al~~~~~-~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~  213 (321)
T 3tqh_A          135 PTAGLTALQALNQAEV-KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAIS  213 (321)
T ss_dssp             HHHHHHHHHHHHHTTC-CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCC
T ss_pred             hhHHHHHHHHHHhcCC-CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhc
Confidence            4433345566644433 479999999855567999999999999997665332                  234 55666


Q ss_pred             cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          122 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       122 ~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      +.+|++|.++|.+.. -.-+.++++-.++.++..
T Consensus       214 ~g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  247 (321)
T 3tqh_A          214 TPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTI  247 (321)
T ss_dssp             SCEEEEEESSCHHHHHHHGGGEEEEEEEEECCST
T ss_pred             cCCCEEEECCCcHHHHHHHHhccCCCEEEEeCCC
Confidence            778999999986543 223556777777777643

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.92  E-value=0.0019  Score=56.59  Aligned_cols=96  Identities=22%  Similarity=0.245  Sum_probs=64.4

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHh
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQ  119 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~  119 (216)
                      .+||....+...|.+..---.|++|+|+|+|+ +|..++.++...|++|+++.+..                   .++.+
T Consensus       169 ~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  247 (363)
T 3uog_A          169 TLPCAGLTAWFALVEKGHLRAGDRVVVQGTGG-VALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVE  247 (363)
T ss_dssp             TTTTHHHHHHHHHTTTTCCCTTCEEEEESSBH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             hcccHHHHHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHH
Confidence            35666666666664433334799999999665 69999999999999988775541                   22222


Q ss_pred             ----hcc--CCCEEEEecCCCCc-ccCCcccCCcEEEEeeeCC
Q 027976          120 ----ITS--EADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       120 ----~~~--~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~~  155 (216)
                          ...  .+|+||.++|.+.+ -.-+.++++-.++.+|...
T Consensus       248 ~v~~~~~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~  290 (363)
T 3uog_A          248 RVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLE  290 (363)
T ss_dssp             HHHHHHTTCCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCS
T ss_pred             HHHHHhCCCCceEEEECCChHHHHHHHHHhhcCCEEEEEecCC
Confidence                222  58999999994322 2234577877888888653

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=96.92  E-value=0.0019  Score=60.44  Aligned_cols=92  Identities=13%  Similarity=0.205  Sum_probs=75.0

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh----CCC-------EEEEEeCC--------C---------
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL--------T---------  114 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~--------t---------  114 (216)
                      +..|++..|+-.+.++++.++++.|+|.+ |.++|.+|..    .|.       ++++|+++        +         
T Consensus       267 ~lAgllnAlki~gk~l~d~riv~~GAGaA-gigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~l~~~k~~~  345 (564)
T 1pj3_A          267 ALAGLLAAQKVISKPISEHKILFLGAGEA-ALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPF  345 (564)
T ss_dssp             HHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGG
T ss_pred             HHHHHHHHHHHhCCcHhHcEEEEeCCCHH-HHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCeEECCCcccchHHHHHH
Confidence            45678889999999999999999999988 9999999885    783       58999653        0         


Q ss_pred             ---------CCHHhhcc--CCCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976          115 ---------KNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  156 (216)
Q Consensus       115 ---------~~l~~~~~--~ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~  156 (216)
                               .+|.+.++  ++|++|-..+.|+.+++++++      +.-+|+=++ ||.
T Consensus       346 A~~~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  403 (564)
T 1pj3_A          346 THSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALS-NPT  403 (564)
T ss_dssp             CBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HHhcCccccCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                     24778888  699999888888889999985      467888877 554

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.90  E-value=0.0014  Score=54.55  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   45 (263)
T 3ak4_A            8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLD   45 (263)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999988764

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.90  E-value=0.0013  Score=55.66  Aligned_cols=54  Identities=15%  Similarity=0.129  Sum_probs=45.4

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------CHHhhccCCCEEEEecCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~l~~~~~~ADIVIsatg~  133 (216)
                      +++|+|.|++|.+|+.++..|+++|.+|+.+.|...                 .+.+.++++|+||...+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence            478999999999999999999999999999887621                 245677889999988774

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.0014  Score=60.54  Aligned_cols=74  Identities=19%  Similarity=0.216  Sum_probs=56.4

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhccC---CCEEEEecCCCCc-
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSE---ADIVIAAAGVANL-  136 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~~---ADIVIsatg~p~~-  136 (216)
                      .++|.|||.|.+ |.+++..|++.|.+|++++|+.                   .++.+.+++   +|+||.+++.+.. 
T Consensus        10 ~~~IgvIGlG~M-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   88 (497)
T 2p4q_A           10 SADFGLIGLAVM-GQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV   88 (497)
T ss_dssp             CCSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred             CCCEEEEeeHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence            357999999876 9999999999999999998753                   134455555   9999999987531 


Q ss_pred             ---cc--CCcccCCcEEEEeeeC
Q 027976          137 ---VR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       137 ---i~--~~~i~~g~vViDvg~~  154 (216)
                         +.  ...+++|.+|||++..
T Consensus        89 ~~vl~~l~~~l~~g~iIId~s~~  111 (497)
T 2p4q_A           89 DALINQIVPLLEKGDIIIDGGNS  111 (497)
T ss_dssp             HHHHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHHHHhCCCCCEEEECCCC
Confidence               21  1346789999998743

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.90  E-value=0.0014  Score=48.49  Aligned_cols=54  Identities=20%  Similarity=0.288  Sum_probs=41.0

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------C---HH-hhccCCCEEEEecCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------N---PE-QITSEADIVIAAAGVA  134 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~---l~-~~~~~ADIVIsatg~p  134 (216)
                      +.+++|+|+|. +|+.++..|.+.|.+|+++.++.+                   +   +. ..++++|+||.+++.+
T Consensus         4 ~m~i~IiG~G~-iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   80 (140)
T 1lss_A            4 GMYIIIAGIGR-VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE   80 (140)
T ss_dssp             -CEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence            46899999976 599999999999999999976421                   1   11 1256789999998864

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.90  E-value=0.0023  Score=55.41  Aligned_cols=37  Identities=19%  Similarity=0.333  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHh--CCCEEEEEeC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQR--HHATVSIVHA  112 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~--~ga~Vti~~~  112 (216)
                      .++++++|+|.|++|.+|+.++..|++  .|++|+++.|
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            357899999999999999999999999  8999999876

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.89  E-value=0.00049  Score=57.89  Aligned_cols=35  Identities=11%  Similarity=0.274  Sum_probs=30.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  113 (216)
                      +++++|+|+|+|+. |.+++..|+..|. +++++++.
T Consensus        29 l~~~~VlVvG~Gg~-G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           29 LKDSRVLIVGLGGL-GCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HHHCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCeEEEEeeCHH-HHHHHHHHHHcCCCeEEEEcCC
Confidence            45789999999996 9999999999997 79998654

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.88  E-value=0.0012  Score=55.21  Aligned_cols=39  Identities=26%  Similarity=0.293  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   61 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTE   61 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            457899999999988889999999999999999998764

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.88  E-value=0.0027  Score=55.98  Aligned_cols=93  Identities=16%  Similarity=0.105  Sum_probs=64.0

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC--------------------HHh
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------------PEQ  119 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~--------------------l~~  119 (216)
                      +||....++..|++.++ -.|.+|+|+|+|+ +|..+++++...|++|+.+.++.+.                    ..+
T Consensus       176 l~~~~~tA~~al~~~~~-~~g~~VlV~GaG~-vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~  253 (369)
T 1uuf_A          176 LLCAGITTYSPLRHWQA-GPGKKVGVVGIGG-LGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAA  253 (369)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHT
T ss_pred             hhhhHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHH
Confidence            45544455677766543 3689999999976 6999999888899998777654211                    112


Q ss_pred             hccCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          120 ITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       120 ~~~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                      ....+|+||.++|.+..+  .-+.++++-.++.++..
T Consensus       254 ~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          254 HLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             TTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC
T ss_pred             hhcCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccC
Confidence            224579999999976533  23567777777777754

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.88  E-value=0.0013  Score=54.37  Aligned_cols=37  Identities=27%  Similarity=0.321  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|++++..|+++|++|.++.++
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~   39 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDIN   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999998765

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.87  E-value=0.0021  Score=53.84  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=45.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------C------HHhhc-------cCCCEEEEecCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------N------PEQIT-------SEADIVIAAAGV  133 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~------l~~~~-------~~ADIVIsatg~  133 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+..          |      +.+.+       ...|+||+..|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~   84 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGI   84 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            478999999999999999999999999999998877521          1      22222       368999998884

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.86  E-value=0.0021  Score=54.29  Aligned_cols=39  Identities=23%  Similarity=0.220  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKP   67 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            368999999999998889999999999999999987753

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.86  E-value=0.0013  Score=53.90  Aligned_cols=69  Identities=20%  Similarity=0.216  Sum_probs=51.2

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEE-EeCCCC---------------CHHhhccCCCEEEEecCCCCc------cc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSI-VHALTK---------------NPEQITSEADIVIAAAGVANL------VR  138 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti-~~~~t~---------------~l~~~~~~ADIVIsatg~p~~------i~  138 (216)
                      .++.|||+|.+ |.+++..|++.|.+|++ ++|+.+               +..+.++++|+||.+++....      +.
T Consensus        24 mkI~IIG~G~m-G~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~  102 (220)
T 4huj_A           24 TTYAIIGAGAI-GSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSIADIVTQVS  102 (220)
T ss_dssp             CCEEEEECHHH-HHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGHHHHHTTCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHHHHHHHHhh
Confidence            58999999775 99999999999999988 666532               223457889999999974321      22


Q ss_pred             CCcccCCcEEEEeee
Q 027976          139 GSWLKPGAVVLDVGT  153 (216)
Q Consensus       139 ~~~i~~g~vViDvg~  153 (216)
                      +  + ++.+|+|+.-
T Consensus       103 ~--~-~~~ivi~~~~  114 (220)
T 4huj_A          103 D--W-GGQIVVDASN  114 (220)
T ss_dssp             C--C-TTCEEEECCC
T ss_pred             c--c-CCCEEEEcCC
Confidence            2  3 5789999873

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.85  E-value=0.0014  Score=59.97  Aligned_cols=73  Identities=21%  Similarity=0.275  Sum_probs=55.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------------CCHHhhccC---CCEEEEecCCCCc---
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSE---ADIVIAAAGVANL---  136 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~~~---ADIVIsatg~p~~---  136 (216)
                      ++|.|||.|.+ |.+++..|++.|.+|++++|+.                  .++.+.+++   +|+||.+++.+..   
T Consensus         6 ~~IgvIG~G~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~   84 (474)
T 2iz1_A            6 ANFGVVGMAVM-GKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDA   84 (474)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHH
T ss_pred             CcEEEEeeHHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHH
Confidence            57999999875 9999999999999999998752                  234455554   9999999987532   


Q ss_pred             -cc--CCcccCCcEEEEeeeC
Q 027976          137 -VR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       137 -i~--~~~i~~g~vViDvg~~  154 (216)
                       +.  ...++++.+|||++..
T Consensus        85 vl~~l~~~l~~g~iiId~s~~  105 (474)
T 2iz1_A           85 TIKSLLPLLDIGDILIDGGNT  105 (474)
T ss_dssp             HHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHhhCCCCCEEEECCCC
Confidence             21  2356788999998743

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.85  E-value=0.0017  Score=59.10  Aligned_cols=78  Identities=22%  Similarity=0.305  Sum_probs=55.3

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHHhhcc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQITS  122 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------~~l~~~~~  122 (216)
                      +...+-.+|.|||.|.. |.++|..|++ |.+|+.++++.                                .++.+.++
T Consensus        31 ~r~~~~mkIaVIGlG~m-G~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           31 GRGSEFMKITISGTGYV-GLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             ----CCCEEEEECCSHH-HHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             ccccCCCEEEEECcCHH-HHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            33344568999999874 9999999987 99999996641                                23456788


Q ss_pred             CCCEEEEecCCCC----------ccc------CCcccCCcEEEEeeeCC
Q 027976          123 EADIVIAAAGVAN----------LVR------GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       123 ~ADIVIsatg~p~----------~i~------~~~i~~g~vViDvg~~~  155 (216)
                      +||+||.+++.+.          .+.      .. ++++++|||.+.-+
T Consensus       109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~  156 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIP  156 (432)
T ss_dssp             TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCC
T ss_pred             CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCC
Confidence            9999999998762          110      12 67889998876544

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.85  E-value=0.0015  Score=52.27  Aligned_cols=52  Identities=23%  Similarity=0.233  Sum_probs=43.0

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------CH----HhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NP----EQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l----~~~~~~ADIVIsatg~  133 (216)
                      +|+|.|++|.+|+.++..|+++|++|+++.|+..               |+    .+.+...|+||+..|.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence            6999999888999999999999999999977621               11    1567889999998886

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.85  E-value=0.0012  Score=55.54  Aligned_cols=57  Identities=26%  Similarity=0.292  Sum_probs=45.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------C-------------HHhhccCCCEEEEecCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------N-------------PEQITSEADIVIAAAGV  133 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~-------------l~~~~~~ADIVIsatg~  133 (216)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+..          |             +.+....-|++|+..|.
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg~  104 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGV  104 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            588999999999988999999999999999999877531          1             11223468999998885

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.85  E-value=0.0027  Score=52.48  Aligned_cols=57  Identities=26%  Similarity=0.355  Sum_probs=45.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------CHHhhc-------cCCCEEEEecC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQIT-------SEADIVIAAAG  132 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~l~~~~-------~~ADIVIsatg  132 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.+                 ++.+.+       ...|++|+..|
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~~Ag   83 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVNAAG   83 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSSCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhhcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            578999999999988999999999999999998876521                 122222       36799998888


Q ss_pred             C
Q 027976          133 V  133 (216)
Q Consensus       133 ~  133 (216)
                      .
T Consensus        84 ~   84 (250)
T 2fwm_X           84 I   84 (250)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.84  E-value=0.0017  Score=53.52  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~   42 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADIN   42 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            46789999999999889999999999999999998775

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.84  E-value=0.0017  Score=53.78  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~   42 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRD   42 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            46889999999999888999999999999999999776

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.84  E-value=0.0012  Score=56.93  Aligned_cols=90  Identities=14%  Similarity=-0.002  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------CCHHhhc---
Q 027976           65 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQIT---  121 (216)
Q Consensus        65 ~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------~~l~~~~---  121 (216)
                      ..++..|.+..-.-.|++++|.|+++.+|..++.++...|++|+++.++.                    .++.+.+   
T Consensus       131 ~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~  210 (333)
T 1v3u_A          131 LTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKA  210 (333)
T ss_dssp             HHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHH
Confidence            33455554433334799999999966679999999999999988876541                    2222222   


Q ss_pred             --cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          122 --SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       122 --~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                        ...|++|+++|.+.+ -.-+.++++..++.++..
T Consensus       211 ~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~  246 (333)
T 1v3u_A          211 SPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAI  246 (333)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             hCCCCeEEEECCChHHHHHHHHHHhcCCEEEEEecc
Confidence              247999999886432 122556777777777754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.84  E-value=0.0006  Score=54.31  Aligned_cols=91  Identities=14%  Similarity=0.163  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHH----hhc
Q 027976           65 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT  121 (216)
Q Consensus        65 ~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~----~~~  121 (216)
                      ..++..+.+..---.|++|+|+|+++.+|+.++..+...|++|+.+.++.                   .+..    +..
T Consensus        24 ~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~  103 (198)
T 1pqw_A           24 LTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELT  103 (198)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHh
Confidence            33445554432234789999999755569999999999999988876542                   1111    112


Q ss_pred             --cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeCC
Q 027976          122 --SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       122 --~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~~  155 (216)
                        +..|++|+++|.+.+ -..+.++++..++.++...
T Consensus       104 ~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~  140 (198)
T 1pqw_A          104 DGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKD  140 (198)
T ss_dssp             TTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGG
T ss_pred             CCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCC
Confidence              247888888874221 1224567777777787643

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.83  E-value=0.0016  Score=54.30  Aligned_cols=37  Identities=24%  Similarity=0.246  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999989999999999999999988765

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.82  E-value=0.002  Score=58.79  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=53.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEeCCC---------------------------------CCHHhhccCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT---------------------------------KNPEQITSEAD  125 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t---------------------------------~~l~~~~~~AD  125 (216)
                      .+|.|||.|.+ |.++|..|++.  |.+|++++++.                                 .++.+.+++||
T Consensus         6 mkI~VIG~G~m-G~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD   84 (467)
T 2q3e_A            6 KKICCIGAGYV-GGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD   84 (467)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             cEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence            48999999875 99999999998  78999997642                                 12234567899


Q ss_pred             EEEEecCCCCccc--------------------CCcccCCcEEEEeeeC
Q 027976          126 IVIAAAGVANLVR--------------------GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       126 IVIsatg~p~~i~--------------------~~~i~~g~vViDvg~~  154 (216)
                      +||.+++.|.-..                    ...++++.+|+|.+..
T Consensus        85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv  133 (467)
T 2q3e_A           85 LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTV  133 (467)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCC
T ss_pred             EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcC
Confidence            9999998664221                    1235778899987543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.81  E-value=0.0022  Score=55.60  Aligned_cols=94  Identities=14%  Similarity=0.119  Sum_probs=64.8

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHh
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQ  119 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~  119 (216)
                      .+||....++..|++.++ -.|++|+|+|+|+ +|..++.++...|++|+.+.++.                   .++.+
T Consensus       145 ~l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~  222 (339)
T 1rjw_A          145 PIFCAGVTTYKALKVTGA-KPGEWVAIYGIGG-LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAK  222 (339)
T ss_dssp             GGGTHHHHHHHHHHHHTC-CTTCEEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHH
T ss_pred             hhhhhHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHH
Confidence            355655556677766643 4689999999977 69999999999999988876531                   12222


Q ss_pred             h----ccCCCEEEEecCCCCccc--CCcccCCcEEEEeeeC
Q 027976          120 I----TSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       120 ~----~~~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~  154 (216)
                      .    ....|++|+++|.+..+.  -+.++++..++.++..
T Consensus       223 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          223 FMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             HHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHHHHhCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEeccc
Confidence            2    246899999999754322  2456777677777754

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.81  E-value=0.0024  Score=58.01  Aligned_cols=127  Identities=17%  Similarity=0.185  Sum_probs=68.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---CHHhhccCCCEEEEecCCCCcccCCcccC--CcEEEEe
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---NPEQITSEADIVIAAAGVANLVRGSWLKP--GAVVLDV  151 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---~l~~~~~~ADIVIsatg~p~~i~~~~i~~--g~vViDv  151 (216)
                      +++||+++|||.|++ |+++|.+|+++|++|++++....   ...+.+++..+-+. .|..   +.+.+..  +.+|+--
T Consensus         6 ~~~~k~v~viG~G~s-G~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~-~g~~---~~~~~~~~~d~vv~sp   80 (451)
T 3lk7_A            6 TFENKKVLVLGLARS-GEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVV-CGSH---PLELLDEDFCYMIKNP   80 (451)
T ss_dssp             TTTTCEEEEECCTTT-HHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEE-ESCC---CGGGGGSCEEEEEECT
T ss_pred             hcCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEE-ECCC---hHHhhcCCCCEEEECC
Confidence            578999999999998 99999999999999999987531   12222332222221 1110   0111121  2344444


Q ss_pred             eeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976          152 GTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       152 g~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      ++++...........+-+++++.++-....+ ..+.-|-|--|.=|+.-|+.+++++.
T Consensus        81 gi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~-~~~IaVTGTnGKTTTt~ml~~iL~~~  137 (451)
T 3lk7_A           81 GIPYNNPMVKKALEKQIPVLTEVELAYLVSE-SQLIGITGSNGKTTTTTMIAEVLNAG  137 (451)
T ss_dssp             TSCTTSHHHHHHHHTTCCEECHHHHHHHHCC-SEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             cCCCCChhHHHHHHCCCcEEeHHHHHHHhcC-CCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            4433210000000012356766654221111 12223456778999999998887653

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.80  E-value=0.00047  Score=58.47  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=35.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|+||.++|-|+++-+|+++|..|+++|++|.++.++
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~   42 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIR   42 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            58999999999999989999999999999999999765

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.80  E-value=0.001  Score=58.10  Aligned_cols=88  Identities=15%  Similarity=0.127  Sum_probs=59.2

Q ss_pred             HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhc-----c
Q 027976           67 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT-----S  122 (216)
Q Consensus        67 ~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~-----~  122 (216)
                      +...|.+..---.|++|+|+|+++.+|..++.++...|++|+++.++.                   .++.+.+     +
T Consensus       155 a~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~  234 (353)
T 4dup_A          155 VWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQ  234 (353)
T ss_dssp             HHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSS
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCC
Confidence            444453333234799999997666679999999999999988886542                   2232222     2


Q ss_pred             CCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          123 EADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       123 ~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      ..|++|+++|.+.+ -.-+.++++-.++.++..
T Consensus       235 g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~  267 (353)
T 4dup_A          235 GVDIILDMIGAAYFERNIASLAKDGCLSIIAFL  267 (353)
T ss_dssp             CEEEEEESCCGGGHHHHHHTEEEEEEEEECCCT
T ss_pred             CceEEEECCCHHHHHHHHHHhccCCEEEEEEec
Confidence            48999999997543 223456777777777754

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.80  E-value=0.0015  Score=54.15  Aligned_cols=38  Identities=29%  Similarity=0.284  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   42 (248)
T 3op4_A            5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATS   42 (248)
T ss_dssp             TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999888999999999999999998775

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.79  E-value=0.0015  Score=54.99  Aligned_cols=55  Identities=18%  Similarity=0.207  Sum_probs=44.0

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------C------------------------CHHhhccCCCEEE
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------K------------------------NPEQITSEADIVI  128 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------~------------------------~l~~~~~~ADIVI  128 (216)
                      +++|+|+|++|.+|+.++..|+++|++|+++.|..       .                        ++.+.++.+|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            57899999988889999999999999988887653       0                        1345677789999


Q ss_pred             EecCCC
Q 027976          129 AAAGVA  134 (216)
Q Consensus       129 satg~p  134 (216)
                      ++++..
T Consensus        82 ~~a~~~   87 (307)
T 2gas_A           82 CAAGRL   87 (307)
T ss_dssp             ECSSSS
T ss_pred             ECCccc
Confidence            887743

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.78  E-value=0.002  Score=54.40  Aligned_cols=39  Identities=18%  Similarity=0.293  Sum_probs=35.3

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~   60 (277)
T 4dqx_A           22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVN   60 (277)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            356899999999999889999999999999999998765

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.78  E-value=0.0023  Score=53.71  Aligned_cols=38  Identities=24%  Similarity=0.168  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   54 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN   54 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999999989999999999999999998775

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.77  E-value=0.0021  Score=53.80  Aligned_cols=40  Identities=23%  Similarity=0.247  Sum_probs=35.5

Q ss_pred             hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ...+++||+++|.|+++-+|+.++..|+++|++|.++.|.
T Consensus        23 ~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (271)
T 4iin_A           23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRS   62 (271)
T ss_dssp             -CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467899999999999889999999999999999988774

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.77  E-value=0.0017  Score=52.90  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   40 (248)
T 2pnf_A            3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTS   40 (248)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999999999999999999999988765

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.76  E-value=0.0026  Score=55.71  Aligned_cols=55  Identities=24%  Similarity=0.299  Sum_probs=44.4

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg  132 (216)
                      ..+|+|||+|. +|.+++..|+..|. +|++..+..                          .++.+.+++||+||.++|
T Consensus         9 ~~kI~VIGaG~-vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g   87 (331)
T 1pzg_A            9 RKKVAMIGSGM-IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   87 (331)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence            35899999965 59999999999886 888885541                          356668999999999998


Q ss_pred             CCC
Q 027976          133 VAN  135 (216)
Q Consensus       133 ~p~  135 (216)
                      .|.
T Consensus        88 ~p~   90 (331)
T 1pzg_A           88 LTK   90 (331)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            664

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.76  E-value=0.0025  Score=53.24  Aligned_cols=57  Identities=21%  Similarity=0.215  Sum_probs=45.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------CHHhh-------ccCCCEEEEec
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NPEQI-------TSEADIVIAAA  131 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l~~~-------~~~ADIVIsat  131 (216)
                      ++++|+++|.|+++-+|++++..|+++|++|.++.|+..                  ++.+.       ...-|++|+..
T Consensus        25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nA  104 (260)
T 3un1_A           25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNA  104 (260)
T ss_dssp             HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEECC
Confidence            368999999999988999999999999999999877531                  11222       23689999888


Q ss_pred             CC
Q 027976          132 GV  133 (216)
Q Consensus       132 g~  133 (216)
                      |.
T Consensus       105 g~  106 (260)
T 3un1_A          105 GV  106 (260)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.76  E-value=0.0025  Score=53.35  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   53 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRD   53 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5889999999999888999999999999999998765

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.75  E-value=0.0021  Score=58.68  Aligned_cols=59  Identities=14%  Similarity=0.223  Sum_probs=47.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-CC-----------------HHhhccCCCEEEEecCCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KN-----------------PEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~-----------------l~~~~~~ADIVIsatg~p~  135 (216)
                      ++++||+|+|+|.|.. |...+..|.+.|++|+++.... +.                 -.+.+..+|+||.+++.+.
T Consensus         8 ~~l~~~~vlVvGgG~v-a~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~~   84 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDV-AERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT   84 (457)
T ss_dssp             ECCBTCEEEEECCSHH-HHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH
T ss_pred             EECCCCEEEEECCCHH-HHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCHH
Confidence            4689999999999985 9999999999999999987542 11                 1245678999999999763

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.75  E-value=0.0015  Score=53.49  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   44 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCC
Confidence            35789999999999989999999999999999988765

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.75  E-value=0.0057  Score=56.37  Aligned_cols=74  Identities=27%  Similarity=0.289  Sum_probs=55.3

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhC-CC-EEEEEeCCCC----C---H--------------------------------Hh
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALTK----N---P--------------------------------EQ  119 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t~----~---l--------------------------------~~  119 (216)
                      .+|.|||.|-. |.++|..|++. |. +|++++++..    .   +                                .+
T Consensus        19 mkIaVIGlG~m-G~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~e   97 (478)
T 3g79_A           19 KKIGVLGMGYV-GIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFS   97 (478)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGG
T ss_pred             CEEEEECcCHH-HHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHH
Confidence            68999999875 99999999999 99 9999976643    0   0                                23


Q ss_pred             hccCCCEEEEecCCCCccc-----------------CCcccCCcEEEEeeeCC
Q 027976          120 ITSEADIVIAAAGVANLVR-----------------GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       120 ~~~~ADIVIsatg~p~~i~-----------------~~~i~~g~vViDvg~~~  155 (216)
                      .+++||+||.++|.|.-..                 ...++++.+|||.+.-+
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  150 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTIT  150 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCC
Confidence            4678999999998763111                 02356888998876544

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.75  E-value=0.0016  Score=54.65  Aligned_cols=38  Identities=18%  Similarity=0.298  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   60 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTR   60 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999889999999999999999988765

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.75  E-value=0.0038  Score=52.01  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   54 (253)
T 2nm0_A           18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRS   54 (253)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998775

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.75  E-value=0.0028  Score=54.97  Aligned_cols=70  Identities=19%  Similarity=0.222  Sum_probs=51.9

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------------CHHhhccCCCEEEEecCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------------~l~~~~~~ADIVIsatg~p  134 (216)
                      .-++.|||+|.+ |.+++..|++.|.+|++++|+.+                         +..+ ++++|+||.+++..
T Consensus        14 ~~kI~iIG~G~m-G~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~~   91 (335)
T 1z82_A           14 EMRFFVLGAGSW-GTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPVQ   91 (335)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCGG
T ss_pred             CCcEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCHH
Confidence            357999999875 99999999999999999987521                         2234 67899999999853


Q ss_pred             Cc--ccCCccc-CCcEEEEee
Q 027976          135 NL--VRGSWLK-PGAVVLDVG  152 (216)
Q Consensus       135 ~~--i~~~~i~-~g~vViDvg  152 (216)
                      ..  +-.+ ++ ++.+||++.
T Consensus        92 ~~~~v~~~-l~~~~~~vv~~~  111 (335)
T 1z82_A           92 YIREHLLR-LPVKPSMVLNLS  111 (335)
T ss_dssp             GHHHHHTT-CSSCCSEEEECC
T ss_pred             HHHHHHHH-hCcCCCEEEEEe
Confidence            31  1111 22 688999986

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.74  E-value=0.0017  Score=53.87  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   47 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRK   47 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999998765

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.74  E-value=0.0019  Score=55.68  Aligned_cols=87  Identities=18%  Similarity=0.142  Sum_probs=58.1

Q ss_pred             HHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHH----hhc--c
Q 027976           68 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--S  122 (216)
Q Consensus        68 ~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~----~~~--~  122 (216)
                      +..|.+..---.|++|+|.|+++.+|..++.++...|++|+.+.++.                   .+..    +..  +
T Consensus       134 ~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~  213 (333)
T 1wly_A          134 QYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGK  213 (333)
T ss_dssp             HHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTC
T ss_pred             HHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCC
Confidence            44454332234789999999855569999999999999988886642                   1211    222  2


Q ss_pred             CCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          123 EADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       123 ~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      ..|++|+++|...+ -.-+.++++..++.++..
T Consensus       214 ~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~  246 (333)
T 1wly_A          214 GVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHA  246 (333)
T ss_dssp             CEEEEEECSCTTTHHHHHHTEEEEEEEEECCCT
T ss_pred             CCeEEEECCcHHHHHHHHHhhccCCEEEEEecC
Confidence            47999999987322 123456777778888754

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.74  E-value=0.0014  Score=52.00  Aligned_cols=53  Identities=19%  Similarity=0.297  Sum_probs=42.2

Q ss_pred             CC-eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------CHHhhcc---CCCEEEEecCC
Q 027976           80 GK-NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITS---EADIVIAAAGV  133 (216)
Q Consensus        80 gk-~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~l~~~~~---~ADIVIsatg~  133 (216)
                      +| +++|.|+++-+|+.++..|+ +|++|+++.|+..          ++.+.++   +.|+||+..|.
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~   68 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGS   68 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            56 89999999999999999999 9999999887631          2333333   47999998884

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.73  E-value=0.0016  Score=56.07  Aligned_cols=57  Identities=19%  Similarity=0.247  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHHhhcc--CCCEEE
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITS--EADIVI  128 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~--~ADIVI  128 (216)
                      ..++|+|+|++|.+|+.++..|+++|.+|+++.|..                            .++.+.++  ++|+||
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   88 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV   88 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence            457899999988899999999999999999987754                            12446677  899999


Q ss_pred             EecCCCC
Q 027976          129 AAAGVAN  135 (216)
Q Consensus       129 satg~p~  135 (216)
                      ++++..+
T Consensus        89 ~~a~~~n   95 (346)
T 3i6i_A           89 STVGGES   95 (346)
T ss_dssp             ECCCGGG
T ss_pred             ECCchhh
Confidence            8887543

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.73  E-value=0.0027  Score=52.58  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|.
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   37 (255)
T 2q2v_A            1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFG   37 (255)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3689999999999889999999999999999988664

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.73  E-value=0.0034  Score=53.07  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   43 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSA   43 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            357899999999998899999999999999999987753

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.72  E-value=0.0023  Score=56.18  Aligned_cols=94  Identities=15%  Similarity=0.075  Sum_probs=60.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhc
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT  121 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~  121 (216)
                      |+.+..+...+.+..---.|++|+|+|+++.+|..++.++...|++|+.+.++.                   .++.+.+
T Consensus       145 ~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~  224 (362)
T 2c0c_A          145 LVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVL  224 (362)
T ss_dssp             TTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHH
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHH
Confidence            333444555665543334799999999756679999999999999988876541                   1222222


Q ss_pred             -----cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          122 -----SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       122 -----~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                           ..+|++|+++|.+.+ -.-+.++++-.++.++..
T Consensus       225 ~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          225 KQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             HHHCTTCEEEEEECSCTHHHHHHHHHEEEEEEEEECCCG
T ss_pred             HHhcCCCCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCC
Confidence                 247999999886321 122446676677777754

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.72  E-value=0.0046  Score=53.67  Aligned_cols=94  Identities=17%  Similarity=0.158  Sum_probs=65.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCC-------------------CC---
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT-------------------KN---  116 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t-------------------~~---  116 (216)
                      +||....++..|++.++ -.|++|+|+|+|+.+|..++.++... |++|+++.++.                   .+   
T Consensus       152 l~~~~~ta~~~l~~~~~-~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  230 (347)
T 1jvb_A          152 LTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLA  230 (347)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             chhhHHHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHH
Confidence            55655556677766433 37899999999967799999999998 99988876541                   12   


Q ss_pred             -HHhhc--cCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          117 -PEQIT--SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       117 -l~~~~--~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                       +.+..  ...|++|+++|.+..+  .-+.++++-.++.++..
T Consensus       231 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          231 EIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             HHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             HHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCC
Confidence             22333  3579999999976332  23556777777777754

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.71  E-value=0.0021  Score=53.35  Aligned_cols=53  Identities=11%  Similarity=0.165  Sum_probs=44.3

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCC----CEEEEEeCCC--------CCHHhhccCCCEEEEecCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALT--------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~g----a~Vti~~~~t--------~~l~~~~~~ADIVIsatg~  133 (216)
                      ..+|.|||.|.+ |.+++..|++.|    .+|++++++.        .+..+.++++|+||.+++.
T Consensus         4 ~m~i~iiG~G~m-G~~~a~~l~~~g~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~   68 (262)
T 2rcy_A            4 NIKLGFMGLGQM-GSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKP   68 (262)
T ss_dssp             SSCEEEECCSHH-HHHHHHHHHHHTSSCGGGEEEECSSCCSSSSEECSCHHHHHHHCSEEEECSCT
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCCCCCeEEEEeCCcccCceEEeCCHHHHHhcCCEEEEEeCH
Confidence            357999999875 999999999988    5799998764        2566778899999999984

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.71  E-value=0.003  Score=58.02  Aligned_cols=55  Identities=18%  Similarity=0.217  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------CHHhhccCCCEEEEecCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------~l~~~~~~ADIVIsatg~p  134 (216)
                      +++|+|.|++|.+|+.++..|+++|.+|+.+.|...           .+.+.+.++|+||+..+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCCc
Confidence            789999999999999999999999999999987632           2356778899999888753

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.71  E-value=0.0035  Score=51.97  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR   39 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999989999999999999999998775

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.71  E-value=0.0022  Score=54.01  Aligned_cols=37  Identities=19%  Similarity=0.144  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   55 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG   55 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999998765

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.71  E-value=0.0012  Score=56.72  Aligned_cols=36  Identities=19%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ++++||+|+|||.|.. |...+..|++.||+|+++..
T Consensus         9 ~~l~~k~VLVVGgG~v-a~rka~~Ll~~Ga~VtViap   44 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEV-GLTRLYKLMPTGCKLTLVSP   44 (274)
T ss_dssp             ECCTTCEEEEEEESHH-HHHHHHHHGGGTCEEEEEEE
T ss_pred             EEcCCCEEEEECCcHH-HHHHHHHHHhCCCEEEEEcC
Confidence            4689999999999885 99999999999999998853

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.71  E-value=0.0021  Score=54.24  Aligned_cols=37  Identities=27%  Similarity=0.196  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~   62 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARD   62 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999998765

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.69  E-value=0.0039  Score=54.40  Aligned_cols=58  Identities=22%  Similarity=0.240  Sum_probs=47.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCC-----------------------CHHhhccCCCEEEEecC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-----------------------NPEQITSEADIVIAAAG  132 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~-----------------------~l~~~~~~ADIVIsatg  132 (216)
                      .+++++|+|.|++|.+|+.++..|+++| ++|+++.|...                       .+.+.++.+|+||...+
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            4678999999999999999999999999 99998866421                       13456678999998887


Q ss_pred             CC
Q 027976          133 VA  134 (216)
Q Consensus       133 ~p  134 (216)
                      ..
T Consensus       109 ~~  110 (377)
T 2q1s_A          109 YH  110 (377)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.69  E-value=0.0016  Score=54.13  Aligned_cols=38  Identities=16%  Similarity=0.183  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   45 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLK   45 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999999989999999999999999998765

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.69  E-value=0.0028  Score=57.23  Aligned_cols=73  Identities=14%  Similarity=0.152  Sum_probs=53.7

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHHhhccCCCEE
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADIV  127 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------------~~l~~~~~~ADIV  127 (216)
                      +|.|||.|.+ |.+++..|++.|.+|++++++.                                  .++.+.+++||+|
T Consensus         2 kI~VIG~G~v-G~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            2 RISIFGLGYV-GAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             EEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            6899999875 9999999999999999986641                                  1233467789999


Q ss_pred             EEecCCCCc---------cc------CCcccC---CcEEEEeeeCC
Q 027976          128 IAAAGVANL---------VR------GSWLKP---GAVVLDVGTCP  155 (216)
Q Consensus       128 Isatg~p~~---------i~------~~~i~~---g~vViDvg~~~  155 (216)
                      |.+++.|.-         +.      ...+++   +.+|++.+..+
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~  126 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVL  126 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCC
T ss_pred             EEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcC
Confidence            999987641         11      123567   88888875443

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.69  E-value=0.0024  Score=53.08  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++++|+++|.|+++-+|+.++..|+++|++|.++.|.
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   49 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   49 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            35789999999999999999999999999999988764

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.69  E-value=0.0027  Score=51.85  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   37 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   37 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCc
Confidence            689999999999999999999999999999987763

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=96.69  E-value=0.0041  Score=52.17  Aligned_cols=58  Identities=10%  Similarity=0.132  Sum_probs=45.4

Q ss_pred             CCCeEEEEcC----------------CchhHHHHHHHHHhCCCEEEEEeCCCC----------------------CHHhh
Q 027976           79 MGKNAVVIGR----------------SNIVGLPTSLLLQRHHATVSIVHALTK----------------------NPEQI  120 (216)
Q Consensus        79 ~gk~v~ViG~----------------gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------~l~~~  120 (216)
                      +||+|+|-|+                +|-+|.++|..|+.+||+|+++++...                      .+.+.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~~   81 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQER   81 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCCCeEEEEHhHHHHHHHHHHHh
Confidence            5899999999                666699999999999999999987521                      12245


Q ss_pred             ccCCCEEEEecCCCCc
Q 027976          121 TSEADIVIAAAGVANL  136 (216)
Q Consensus       121 ~~~ADIVIsatg~p~~  136 (216)
                      ..++|++|.+.+...+
T Consensus        82 ~~~~Dili~aAAvsD~   97 (232)
T 2gk4_A           82 VQDYQVLIHSMAVSDY   97 (232)
T ss_dssp             GGGCSEEEECSBCCSE
T ss_pred             cCCCCEEEEcCccccc
Confidence            5679999998886543

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.68  E-value=0.002  Score=53.54  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=47.2

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCC---------------CHHhhccCCCEEEEecCCCCcc---cCCcc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK---------------NPEQITSEADIVIAAAGVANLV---RGSWL  142 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~---------------~l~~~~~~ADIVIsatg~p~~i---~~~~i  142 (216)
                      ++.|||.|.+ |.+++..|++.| .+|++++++.+               +..+.+ ++|+||.+++ +..+   -.+..
T Consensus         2 ~i~iiG~G~m-G~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~l~   78 (263)
T 1yqg_A            2 NVYFLGGGNM-AAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKNIR   78 (263)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTTCC
T ss_pred             EEEEECchHH-HHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHHhc
Confidence            6899999875 999999999999 89999987631               223445 8999999998 4311   01110


Q ss_pred             -cCCcEEEEe
Q 027976          143 -KPGAVVLDV  151 (216)
Q Consensus       143 -~~g~vViDv  151 (216)
                       + +.+|+|+
T Consensus        79 ~~-~~ivv~~   87 (263)
T 1yqg_A           79 TN-GALVLSV   87 (263)
T ss_dssp             CT-TCEEEEC
T ss_pred             cC-CCEEEEe
Confidence             3 6777777

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.68  E-value=0.0022  Score=58.96  Aligned_cols=71  Identities=10%  Similarity=0.117  Sum_probs=53.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------------------CHHhhccCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------------NPEQITSEAD  125 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------------~l~~~~~~AD  125 (216)
                      ++|.|||+|-+ |.++|..|++.|.+|++.+++.+                                   ++ +.+++||
T Consensus        55 ~kVaVIGaG~M-G~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~al~~aD  132 (460)
T 3k6j_A           55 NSVAIIGGGTM-GKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-HKLSNCD  132 (460)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-GGCTTCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-HHHccCC
Confidence            68999999875 99999999999999999976521                                   22 3678999


Q ss_pred             EEEEecCCCCccc-------CCcccCCcEEEEeee
Q 027976          126 IVIAAAGVANLVR-------GSWLKPGAVVLDVGT  153 (216)
Q Consensus       126 IVIsatg~p~~i~-------~~~i~~g~vViDvg~  153 (216)
                      +||.|++...-++       .+.+++++++++...
T Consensus       133 lVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTS  167 (460)
T 3k6j_A          133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTS  167 (460)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCS
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCC
Confidence            9999998532121       134678888877544

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.68  E-value=0.0025  Score=53.64  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=34.1

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ..+++||+++|.|+++-+|++++..|+++|++|.++.+
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~   63 (271)
T 3v2g_A           26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYV   63 (271)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            35789999999999988899999999999999888744

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.68  E-value=0.0014  Score=53.28  Aligned_cols=57  Identities=21%  Similarity=0.209  Sum_probs=44.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------CHH---hhccCCCEEEEecCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------NPE---QITSEADIVIAAAGV  133 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------~l~---~~~~~ADIVIsatg~  133 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|.++.|...       ++.   +.+.+-|++|+..|.
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nAg~   69 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTAGS   69 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            468999999999988999999999999999999877531       122   233467999988884

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.68  E-value=0.0015  Score=55.16  Aligned_cols=71  Identities=18%  Similarity=0.351  Sum_probs=51.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------------CHHhhcc---CCCEEEEec
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------NPEQITS---EADIVIAAA  131 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------------~l~~~~~---~ADIVIsat  131 (216)
                      .+|.|||+|.+ |.+++..|++.|.+|++++++.+                          +..+..+   ++|+||.++
T Consensus         4 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v   82 (316)
T 2ew2_A            4 MKIAIAGAGAM-GSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALT   82 (316)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECS
T ss_pred             CeEEEECcCHH-HHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEe
Confidence            47999999775 99999999999999999977521                          1112223   899999999


Q ss_pred             CCCCc---cc--CCcccCCcEEEEee
Q 027976          132 GVANL---VR--GSWLKPGAVVLDVG  152 (216)
Q Consensus       132 g~p~~---i~--~~~i~~g~vViDvg  152 (216)
                      +....   +.  ...++++.+|+++.
T Consensus        83 ~~~~~~~v~~~l~~~l~~~~~iv~~~  108 (316)
T 2ew2_A           83 KAQQLDAMFKAIQPMITEKTYVLCLL  108 (316)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             ccccHHHHHHHHHHhcCCCCEEEEec
Confidence            85321   11  13456788888885

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.68  E-value=0.00083  Score=56.84  Aligned_cols=72  Identities=21%  Similarity=0.345  Sum_probs=53.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEeCCC----------------CCHHhhccCCCEEEEecCCCC---ccc-
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR-  138 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~---~i~-  138 (216)
                      +++.|||.|.+ |.+++..|.+.  +.+|++++++.                .++.+.++++|+||.+++...   .+. 
T Consensus         7 ~~I~iIG~G~m-G~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~   85 (290)
T 3b1f_A            7 KTIYIAGLGLI-GASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKTIDFIKI   85 (290)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHHHHHHHH
T ss_pred             ceEEEEeeCHH-HHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHHHHHHHH
Confidence            68999999875 99999999887  57899887652                234456788999999998533   121 


Q ss_pred             -CCc-ccCCcEEEEeee
Q 027976          139 -GSW-LKPGAVVLDVGT  153 (216)
Q Consensus       139 -~~~-i~~g~vViDvg~  153 (216)
                       ..+ ++++.+|+|++.
T Consensus        86 l~~~~l~~~~ivi~~~~  102 (290)
T 3b1f_A           86 LADLDLKEDVIITDAGS  102 (290)
T ss_dssp             HHTSCCCTTCEEECCCS
T ss_pred             HHhcCCCCCCEEEECCC
Confidence             234 678889998754

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.68  E-value=0.0032  Score=53.88  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=43.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHHhhccC--CCEEEEec
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITSE--ADIVIAAA  131 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------~l~~~~~~--ADIVIsat  131 (216)
                      .+++++|+|.|++|.+|+.++..|+++|++|+++.|...                       .+.+.+++  .|+||+..
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A   97 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTA   97 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECc
Confidence            357899999999999999999999999999998876421                       12345555  89999888


Q ss_pred             CC
Q 027976          132 GV  133 (216)
Q Consensus       132 g~  133 (216)
                      +.
T Consensus        98 ~~   99 (333)
T 2q1w_A           98 AS   99 (333)
T ss_dssp             CC
T ss_pred             ee
Confidence            74

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.67  E-value=0.0026  Score=53.14  Aligned_cols=70  Identities=14%  Similarity=0.136  Sum_probs=51.5

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC---------------------HHhhccCCCEEEEecCCCCc---c
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PEQITSEADIVIAAAGVANL---V  137 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l~~~~~~ADIVIsatg~p~~---i  137 (216)
                      ++.|||+|.+ |.+++..|++.|.+|++++|+.+.                     ..+.++++|+||.+++....   +
T Consensus         2 ~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~   80 (291)
T 1ks9_A            2 KITVLGCGAL-GQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (291)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             eEEEECcCHH-HHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHhHHHHH
Confidence            6899999775 999999999999999999775321                     12446689999999986542   1


Q ss_pred             c--CCcccCCcEEEEee
Q 027976          138 R--GSWLKPGAVVLDVG  152 (216)
Q Consensus       138 ~--~~~i~~g~vViDvg  152 (216)
                      .  ...++++.+|+|+.
T Consensus        81 ~~l~~~l~~~~~vv~~~   97 (291)
T 1ks9_A           81 KSLASTLPVTTPILLIH   97 (291)
T ss_dssp             HHHHTTSCTTSCEEEEC
T ss_pred             HHHHhhCCCCCEEEEec
Confidence            1  13456778888874

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.67  E-value=0.0056  Score=53.51  Aligned_cols=57  Identities=14%  Similarity=0.046  Sum_probs=46.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhccCCCEEEEecCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~  133 (216)
                      +.++++|+|.|++|.+|+.++..|+++|++|+++.|...                     ++.+.++..|+||+..+.
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            346789999999999999999999999999998876521                     134667889999988874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.66  E-value=0.0033  Score=48.13  Aligned_cols=55  Identities=16%  Similarity=0.247  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------------CHHhh-ccCCCEEEEecC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NPEQI-TSEADIVIAAAG  132 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------------~l~~~-~~~ADIVIsatg  132 (216)
                      ..++++|+|+|. +|+.++..|.+.|.+|+++.+..+                         .+.+. +.+||.||.+++
T Consensus         2 ~~~~vlI~G~G~-vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (153)
T 1id1_A            2 RKDHFIVCGHSI-LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             CCSCEEEECCSH-HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CCCcEEEECCCH-HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence            357899999976 599999999999999999877420                         12233 788999999988


Q ss_pred             CC
Q 027976          133 VA  134 (216)
Q Consensus       133 ~p  134 (216)
                      ..
T Consensus        81 ~d   82 (153)
T 1id1_A           81 ND   82 (153)
T ss_dssp             CH
T ss_pred             Ch
Confidence            64

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.66  E-value=0.0022  Score=55.49  Aligned_cols=71  Identities=18%  Similarity=0.184  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhccCCCEEEEecCCCCcc
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVANLV  137 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~p~~i  137 (216)
                      .-|+|.|||.|-+ |.++|..|+ .|.+|++.+++..                     ++.+ +++||+||.+++...-+
T Consensus        11 ~~~~V~vIG~G~M-G~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           11 HHMKVFVIGAGLM-GRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             -CCEEEEECCSHH-HHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             CCCeEEEEeeCHH-HHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            4689999999876 999999999 9999999987631                     2222 78899999999865422


Q ss_pred             cCC------cccCCcEEE-Eeee
Q 027976          138 RGS------WLKPGAVVL-DVGT  153 (216)
Q Consensus       138 ~~~------~i~~g~vVi-Dvg~  153 (216)
                      +..      -+ +++++. |.+.
T Consensus        88 k~~l~~~l~~~-~~~IlasntSt  109 (293)
T 1zej_A           88 KVEVLREVERL-TNAPLCSNTSV  109 (293)
T ss_dssp             HHHHHHHHHTT-CCSCEEECCSS
T ss_pred             HHHHHHHHhcC-CCCEEEEECCC
Confidence            221      13 777775 5543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.66  E-value=0.0037  Score=53.10  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.++
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~   80 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLD   80 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999889999999999999999988765

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.66  E-value=0.0025  Score=54.07  Aligned_cols=55  Identities=15%  Similarity=0.099  Sum_probs=44.2

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-C-----------------------------CHHhhccCCCEEEE
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-K-----------------------------NPEQITSEADIVIA  129 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~-----------------------------~l~~~~~~ADIVIs  129 (216)
                      .++|+|+|++|.+|+.++..|+++|++|+++.|.. .                             ++.+.++.+|+||+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            47899999988889999999999999999887753 0                             14466778899998


Q ss_pred             ecCCC
Q 027976          130 AAGVA  134 (216)
Q Consensus       130 atg~p  134 (216)
                      +++..
T Consensus        84 ~a~~~   88 (321)
T 3c1o_A           84 ALPFP   88 (321)
T ss_dssp             CCCGG
T ss_pred             CCCcc
Confidence            87743

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.66  E-value=0.0028  Score=52.52  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=34.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   41 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKP   41 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            57899999999998899999999999999999987763

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.65  E-value=0.0025  Score=52.74  Aligned_cols=38  Identities=13%  Similarity=0.106  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   47 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   47 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999999999999999999999998765

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.65  E-value=0.0079  Score=52.50  Aligned_cols=93  Identities=15%  Similarity=0.224  Sum_probs=64.0

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHHh
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQ  119 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~  119 (216)
                      +||....++..|++.++ -.|++|+|+|+|+ +|..++.++...|++|+.+.++.+                    ++.+
T Consensus       161 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~  238 (360)
T 1piw_A          161 LLCGGLTVYSPLVRNGC-GPGKKVGIVGLGG-IGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGE  238 (360)
T ss_dssp             GGTHHHHHHHHHHHTTC-STTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHH
T ss_pred             hhhhHHHHHHHHHHcCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHH
Confidence            55655556677766443 3689999999955 699999988889999888765432                    2222


Q ss_pred             hc-cCCCEEEEecCC--CCccc--CCcccCCcEEEEeeeC
Q 027976          120 IT-SEADIVIAAAGV--ANLVR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       120 ~~-~~ADIVIsatg~--p~~i~--~~~i~~g~vViDvg~~  154 (216)
                      .+ ..+|+||.++|.  +..+.  -+.++++..++.++..
T Consensus       239 ~~~~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          239 KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCC
T ss_pred             HhhcCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCC
Confidence            22 357999999987  54432  3556777777777753

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.65  E-value=0.0025  Score=54.41  Aligned_cols=38  Identities=26%  Similarity=0.330  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        27 ~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~   64 (301)
T 3tjr_A           27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVD   64 (301)
T ss_dssp             CCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35899999999999989999999999999999998765

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.65  E-value=0.0023  Score=53.15  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   39 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRT   39 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999998775

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.65  E-value=0.0024  Score=54.02  Aligned_cols=56  Identities=14%  Similarity=0.189  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------CCHHhhcc--CCCEEEEecCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------KNPEQITS--EADIVIAAAGVA  134 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------~~l~~~~~--~ADIVIsatg~p  134 (216)
                      .+++|+|.|++|.+|+.++..|+++|++|+++.+..       .++.+.++  +.|+||...+..
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~   66 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKV   66 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEcCeec
Confidence            468999999999999999999999999988876542       13456677  899999888753

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.65  E-value=0.0015  Score=55.03  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~   59 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTD   59 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999889999999999999999988664

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.64  E-value=0.0024  Score=52.42  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=35.5

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~   47 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSN   47 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            456899999999999999999999999999999998775

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.64  E-value=0.0028  Score=54.79  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=52.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------------------------CCHHhhccCCCEEEEec
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------------KNPEQITSEADIVIAAA  131 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------------------~~l~~~~~~ADIVIsat  131 (216)
                      .+|.|||+|.+ |..++..|++.|.+|+++.++.                             .++.+.++++|+||.++
T Consensus         5 mki~iiG~G~~-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v   83 (359)
T 1bg6_A            5 KTYAVLGLGNG-GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   83 (359)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CeEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence            58999999865 9999999999999999996641                             13445577899999999


Q ss_pred             CCCCc---cc--CCcccCCcEEEEe
Q 027976          132 GVANL---VR--GSWLKPGAVVLDV  151 (216)
Q Consensus       132 g~p~~---i~--~~~i~~g~vViDv  151 (216)
                      +....   +.  ...++++.+|+++
T Consensus        84 ~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           84 PAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             CchHHHHHHHHHHHhCCCCCEEEEc
Confidence            86431   11  1335677777776

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.63  E-value=0.0036  Score=53.86  Aligned_cols=57  Identities=14%  Similarity=0.141  Sum_probs=46.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------------------CHHhhccCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------------NPEQITSEA  124 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------------------~l~~~~~~A  124 (216)
                      ++++++|+|.|++|.+|+.++..|+++|++|+++.|...                                .+.+.++..
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            357899999999999999999999999999998876321                                134567789


Q ss_pred             CEEEEecCC
Q 027976          125 DIVIAAAGV  133 (216)
Q Consensus       125 DIVIsatg~  133 (216)
                      |+||...+.
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            999988874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.63  E-value=0.0021  Score=48.71  Aligned_cols=55  Identities=13%  Similarity=0.106  Sum_probs=42.7

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------C---HHh-hccCCCEEEEecCCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------N---PEQ-ITSEADIVIAAAGVAN  135 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~---l~~-~~~~ADIVIsatg~p~  135 (216)
                      .++++|+|.|.. |+.++..|.+.|.+|+++.++.+                  +   +.+ .+.+||+||.+++...
T Consensus         7 ~~~viIiG~G~~-G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A            7 CNHALLVGYGRV-GSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGY   83 (140)
T ss_dssp             CSCEEEECCSHH-HHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHH
T ss_pred             CCCEEEECcCHH-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChH
Confidence            357999999885 99999999999999999977521                  1   222 3578999999998653

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.63  E-value=0.0017  Score=58.34  Aligned_cols=71  Identities=17%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC---CEEEEEeCCCC----------------------------CHHhhccC--CCEE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALTK----------------------------NPEQITSE--ADIV  127 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t~----------------------------~l~~~~~~--ADIV  127 (216)
                      ++|+|+|+|+ +|+.++..|++.+   .+|+++.|+..                            ++.+.+++  +|+|
T Consensus         2 ~kVlIiGaGg-iG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV   80 (405)
T 4ina_A            2 AKVLQIGAGG-VGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV   80 (405)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence            5899999987 5999999999988   38999877521                            13344555  8999


Q ss_pred             EEecCCCC--cccCCcccCCcEEEEee
Q 027976          128 IAAAGVAN--LVRGSWLKPGAVVLDVG  152 (216)
Q Consensus       128 Isatg~p~--~i~~~~i~~g~vViDvg  152 (216)
                      |+++|...  .+-...++.|.-++|++
T Consensus        81 in~ag~~~~~~v~~a~l~~g~~vvD~a  107 (405)
T 4ina_A           81 LNIALPYQDLTIMEACLRTGVPYLDTA  107 (405)
T ss_dssp             EECSCGGGHHHHHHHHHHHTCCEEESS
T ss_pred             EECCCcccChHHHHHHHHhCCCEEEec
Confidence            99998421  13334566788899974

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.63  E-value=0.0034  Score=51.16  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE-eCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV-HAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~-~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++ .+.
T Consensus         2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~   39 (247)
T 2hq1_A            2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPA   39 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcC
Confidence            3679999999999999999999999999999888 443

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.63  E-value=0.0024  Score=55.46  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=53.6

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCC-------CEEEEEeCCCC---------------------------------CHHh
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHALTK---------------------------------NPEQ  119 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~g-------a~Vti~~~~t~---------------------------------~l~~  119 (216)
                      .++|.|||+|.+ |.+++..|++.|       .+|++++++..                                 ++.+
T Consensus         8 ~mkI~iIG~G~m-G~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
T 1x0v_A            8 SKKVCIVGSGNW-GSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ   86 (354)
T ss_dssp             CEEEEEECCSHH-HHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred             CCeEEEECCCHH-HHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence            358999999875 999999999988       78999976532                                 2234


Q ss_pred             hccCCCEEEEecCCCCc---cc--CCcccCCcEEEEee
Q 027976          120 ITSEADIVIAAAGVANL---VR--GSWLKPGAVVLDVG  152 (216)
Q Consensus       120 ~~~~ADIVIsatg~p~~---i~--~~~i~~g~vViDvg  152 (216)
                      .+++||+||.+++....   +.  ...++++.+|+++.
T Consensus        87 ~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~  124 (354)
T 1x0v_A           87 AAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLI  124 (354)
T ss_dssp             HHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECC
T ss_pred             HHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEEC
Confidence            56789999999975321   11  23467789999985

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.62  E-value=0.0019  Score=54.02  Aligned_cols=56  Identities=13%  Similarity=0.152  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------CHHhhcc--CCCEEEEecCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------NPEQITS--EADIVIAAAGVA  134 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------~l~~~~~--~ADIVIsatg~p  134 (216)
                      .-++|+|.|++|.+|+.++..|+++|++|+++.|..-      .+.+.++  ..|+||+..+..
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   74 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHT   74 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCccC
Confidence            4578999999999999999999999999999987532      2445666  799999888753

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.62  E-value=0.0031  Score=51.97  Aligned_cols=37  Identities=22%  Similarity=0.339  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++ |.++.|+
T Consensus         2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~   39 (254)
T 1sby_A            2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecC
Confidence            478999999999998999999999999996 8888765

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.61  E-value=0.0056  Score=51.45  Aligned_cols=52  Identities=19%  Similarity=0.246  Sum_probs=44.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC--------HHhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------PEQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~--------l~~~~~~ADIVIsatg~  133 (216)
                      ||+|.|++|.+|+.++..|.++|.+|+++.|+...        ..+.++++|.||+..+.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla~~   61 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAGE   61 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecchhhHhhccCCCEEEEeccC
Confidence            69999999999999999999999999999886421        24567899999987764

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.61  E-value=0.0027  Score=55.14  Aligned_cols=58  Identities=14%  Similarity=0.114  Sum_probs=47.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhC-CC-EEEEEeCCC-------------------------CCHHhhccCCCEEEE
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALT-------------------------KNPEQITSEADIVIA  129 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t-------------------------~~l~~~~~~ADIVIs  129 (216)
                      .+++|+|+|.|++|.+|+.++..|+++ |+ +|+++.|..                         ..+.+.++..|+||.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih   97 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH   97 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999 97 899887641                         124466778999998


Q ss_pred             ecCCC
Q 027976          130 AAGVA  134 (216)
Q Consensus       130 atg~p  134 (216)
                      +++..
T Consensus        98 ~Aa~~  102 (344)
T 2gn4_A           98 AAALK  102 (344)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            88754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=96.61  E-value=0.0041  Score=52.43  Aligned_cols=33  Identities=15%  Similarity=0.073  Sum_probs=30.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ||+|+|.|++|.+|+.++..|+++|++|+++.|
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r   33 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR   33 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEe
Confidence            689999999999999999999999999987765

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.60  E-value=0.0034  Score=51.46  Aligned_cols=37  Identities=11%  Similarity=0.122  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .++|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   41 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            5789999999999999999999999999999987763

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.60  E-value=0.0052  Score=52.07  Aligned_cols=37  Identities=19%  Similarity=0.048  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++++|+|.|++|.+|+.++..|+++|++|+++.|.
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3678999999998889999999999999999887653

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.59  E-value=0.0022  Score=53.18  Aligned_cols=38  Identities=32%  Similarity=0.318  Sum_probs=30.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||.++|.|+++-+|++++..|+++|++|.++.+.
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   42 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR   42 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCc
Confidence            35789999999998888999999999999999988765

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.58  E-value=0.0045  Score=54.10  Aligned_cols=54  Identities=28%  Similarity=0.456  Sum_probs=43.6

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg  132 (216)
                      .++|.|||+|. +|.++|..|+..|. +|++..++.                          .++ +.+++||+||.++|
T Consensus        14 ~~kI~ViGaG~-vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           14 RKKISIIGAGQ-IGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            36899999965 59999999999997 888886542                          244 67899999999998


Q ss_pred             CCC
Q 027976          133 VAN  135 (216)
Q Consensus       133 ~p~  135 (216)
                      .|.
T Consensus        92 ~p~   94 (328)
T 2hjr_A           92 VPR   94 (328)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            664

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.58  E-value=0.0025  Score=53.84  Aligned_cols=38  Identities=24%  Similarity=0.263  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   62 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADID   62 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35899999999999888999999999999999998775

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.58  E-value=0.00081  Score=59.39  Aligned_cols=73  Identities=16%  Similarity=0.155  Sum_probs=54.2

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhcc----CCCEEEEecCCCC---ccc
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITS----EADIVIAAAGVAN---LVR  138 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~----~ADIVIsatg~p~---~i~  138 (216)
                      -++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++    ++|+||.+++...   .+.
T Consensus         8 ~~kIgIIG~G~m-G~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl~   86 (341)
T 3ktd_A            8 SRPVCILGLGLI-GGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLD   86 (341)
T ss_dssp             SSCEEEECCSHH-HHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHHH
T ss_pred             CCEEEEEeecHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHHH
Confidence            357999999875 9999999999999999998763              23444444    4799999998432   111


Q ss_pred             --CCcccCCcEEEEeeeC
Q 027976          139 --GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       139 --~~~i~~g~vViDvg~~  154 (216)
                        .. ++++++|+|++..
T Consensus        87 ~l~~-~~~~~iv~Dv~Sv  103 (341)
T 3ktd_A           87 AVHT-HAPNNGFTDVVSV  103 (341)
T ss_dssp             HHHH-HCTTCCEEECCSC
T ss_pred             HHHc-cCCCCEEEEcCCC
Confidence              11 3789999999864

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.57  E-value=0.0073  Score=49.02  Aligned_cols=35  Identities=23%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~   35 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARS   35 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999999888999999999999999988775

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.56  E-value=0.0019  Score=57.01  Aligned_cols=70  Identities=11%  Similarity=0.151  Sum_probs=53.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-------CEEEEEeCCCC---------------------------------CHHhh
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHALTK---------------------------------NPEQI  120 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g-------a~Vti~~~~t~---------------------------------~l~~~  120 (216)
                      ++|.|||+|.+ |.+++..|++.|       .+|++++++..                                 ++.+.
T Consensus        22 ~kI~iIGaG~m-G~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea  100 (375)
T 1yj8_A           22 LKISILGSGNW-ASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV  100 (375)
T ss_dssp             BCEEEECCSHH-HHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred             CEEEEECcCHH-HHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence            47999999875 999999999988       88999977543                                 12245


Q ss_pred             ccCCCEEEEecCCCC---c---ccCC----cccCCcEEEEee
Q 027976          121 TSEADIVIAAAGVAN---L---VRGS----WLKPGAVVLDVG  152 (216)
Q Consensus       121 ~~~ADIVIsatg~p~---~---i~~~----~i~~g~vViDvg  152 (216)
                      +++||+||.+++...   .   +. .    .++++.+|+++.
T Consensus       101 ~~~aDvVilav~~~~~~~vl~~i~-~~~~~~l~~~~ivvs~~  141 (375)
T 1yj8_A          101 INDADLLIFIVPCQYLESVLASIK-ESESIKIASHAKAISLT  141 (375)
T ss_dssp             HTTCSEEEECCCHHHHHHHHHHHT-C---CCCCTTCEEEECC
T ss_pred             HcCCCEEEEcCCHHHHHHHHHHHh-hhhhccCCCCCEEEEeC
Confidence            678999999998532   1   22 3    677888999885

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.56  E-value=0.0029  Score=53.19  Aligned_cols=57  Identities=16%  Similarity=0.202  Sum_probs=43.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----C---H------------HhhccCCCEEEEecCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----N---P------------EQITSEADIVIAAAGVA  134 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----~---l------------~~~~~~ADIVIsatg~p  134 (216)
                      +.+++|+|.|++|.+|+.++..|+++|++|+++.|...    .   +            ..-+.+.|+||.+.+..
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~d~vi~~a~~~   80 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLSDVRLVYHLASHK   80 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHTTEEEEEECCCCC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccccCCEEEECCccC
Confidence            46899999999999999999999999999999977543    1   1            11122689999888753

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.56  E-value=0.0014  Score=56.13  Aligned_cols=37  Identities=24%  Similarity=0.245  Sum_probs=34.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+||.++|-|++.-+|+++|..|+++||+|.++.|+
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~   62 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRR   62 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999999888999999999999999999876

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.55  E-value=0.0033  Score=53.41  Aligned_cols=35  Identities=23%  Similarity=0.130  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+|.|++|.+|+.++..|+++|++|+++.|.
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   36 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRR   36 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            57999999998889999999999999999998765

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.55  E-value=0.0053  Score=51.80  Aligned_cols=37  Identities=19%  Similarity=0.174  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .+++||.++|.|+++-+|++++..|+++|++|.++.+
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~   61 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGI   61 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            3578999999999988899999999999999988865

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.55  E-value=0.0026  Score=53.55  Aligned_cols=38  Identities=26%  Similarity=0.204  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATT   61 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999889999999999999999988775

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.55  E-value=0.0036  Score=52.40  Aligned_cols=36  Identities=19%  Similarity=-0.048  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~   38 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARR   38 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999889999999999999999988775

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.54  E-value=0.0038  Score=53.12  Aligned_cols=52  Identities=19%  Similarity=0.205  Sum_probs=44.2

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCCC---------------CCHHhhccCCCEEEEecC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t---------------~~l~~~~~~ADIVIsatg  132 (216)
                      .+++.|||+|.+ |.+++..|.+.|.   +|++++++.               .+..+.++++|+||.++.
T Consensus         3 ~~~I~iIG~G~m-G~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~   72 (280)
T 3tri_A            3 TSNITFIGGGNM-ARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK   72 (280)
T ss_dssp             CSCEEEESCSHH-HHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC
T ss_pred             CCEEEEEcccHH-HHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC
Confidence            478999999876 9999999999997   799998763               245677889999999995

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.54  E-value=0.0018  Score=56.14  Aligned_cols=57  Identities=16%  Similarity=0.239  Sum_probs=44.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCCC--------------------C---HHhhccCCCEEEEecC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTK--------------------N---PEQITSEADIVIAAAG  132 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t~--------------------~---l~~~~~~ADIVIsatg  132 (216)
                      .+.+++|+|.|++|.+|+.++..|+++ |++|+++.|...                    +   +.+.++++|+||...+
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            357899999999999999999999998 899999877531                    1   3345667899998776


Q ss_pred             C
Q 027976          133 V  133 (216)
Q Consensus       133 ~  133 (216)
                      .
T Consensus       101 ~  101 (372)
T 3slg_A          101 I  101 (372)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.54  E-value=0.0016  Score=56.98  Aligned_cols=93  Identities=24%  Similarity=0.186  Sum_probs=59.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHH---
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE---  118 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~---  118 (216)
                      |+....++..|.+..---.|++|+|.|+++.+|..++.++...|++|+.+.++.                   .+..   
T Consensus       152 ~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~  231 (351)
T 1yb5_A          152 GIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKI  231 (351)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHH
T ss_pred             hhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHH
Confidence            333333455554332234699999999966679999999999999988876541                   1221   


Q ss_pred             -hhcc--CCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976          119 -QITS--EADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       119 -~~~~--~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~  153 (216)
                       +...  ..|++|+++|.+.+ -.-+.++++-.++.++.
T Consensus       232 ~~~~~~~~~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          232 KKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             HHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCC
T ss_pred             HHHcCCCCcEEEEECCChHHHHHHHHhccCCCEEEEEec
Confidence             2222  57999999886432 12244667666777774

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.54  E-value=0.0027  Score=53.59  Aligned_cols=54  Identities=11%  Similarity=0.183  Sum_probs=40.2

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhcc--CCCEEEEecCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITS--EADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~--~ADIVIsatg~  133 (216)
                      +++|+|.|++|.+|+.++..|+++|++|+++.|..             ..+.+.++  +.|+||+..+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence            68999999999899999999999999998887532             12344555  38999988874

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.54  E-value=0.0025  Score=58.64  Aligned_cols=72  Identities=24%  Similarity=0.302  Sum_probs=52.5

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------C-------------------CHHhhccCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------K-------------------NPEQITSEAD  125 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------~-------------------~l~~~~~~AD  125 (216)
                      .-+|.|||.|- +|.++|..|++.|.+|+.++++.               +                   ++.+.+++||
T Consensus         8 ~~~I~VIG~G~-vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD   86 (478)
T 2y0c_A            8 SMNLTIIGSGS-VGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD   86 (478)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred             CceEEEECcCH-HHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence            35899999987 49999999999999999997641               1                   2234567899


Q ss_pred             EEEEecCCC---------Cccc------CCcccCCcEEEEee
Q 027976          126 IVIAAAGVA---------NLVR------GSWLKPGAVVLDVG  152 (216)
Q Consensus       126 IVIsatg~p---------~~i~------~~~i~~g~vViDvg  152 (216)
                      +||.+++.|         ..+.      ...++++.+|++.+
T Consensus        87 vviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           87 VQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             EEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            999999876         1111      12356777777765

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.54  E-value=0.0033  Score=52.33  Aligned_cols=38  Identities=26%  Similarity=0.226  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARD   62 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            45889999999998888999999999999999988775

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.53  E-value=0.0049  Score=54.19  Aligned_cols=78  Identities=12%  Similarity=0.044  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC------------------CCCHHhhc-----cCCCEEEEecCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL------------------TKNPEQIT-----SEADIVIAAAGVA  134 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~------------------t~~l~~~~-----~~ADIVIsatg~p  134 (216)
                      -.|++|+|+|+++.+|..++.++...|++|+...+.                  ..++.+.+     ..+|++|.++|.+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~  242 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNV  242 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCch
Confidence            578999999997778999999999999986655322                  12222222     2389999999986


Q ss_pred             Cccc--CCcc-cCCcEEEEeeeCC
Q 027976          135 NLVR--GSWL-KPGAVVLDVGTCP  155 (216)
Q Consensus       135 ~~i~--~~~i-~~g~vViDvg~~~  155 (216)
                      ..+.  -+.+ +++-.++.++..+
T Consensus       243 ~~~~~~~~~l~~~~G~iv~~g~~~  266 (371)
T 3gqv_A          243 ESTTFCFAAIGRAGGHYVSLNPFP  266 (371)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSCCC
T ss_pred             HHHHHHHHHhhcCCCEEEEEecCc
Confidence            5332  2456 5777777887543

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.53  E-value=0.0036  Score=55.30  Aligned_cols=58  Identities=9%  Similarity=0.289  Sum_probs=44.0

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCC-----------------------CCCHHhhccCCCEEEEecC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL-----------------------TKNPEQITSEADIVIAAAG  132 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~-----------------------t~~l~~~~~~ADIVIsatg  132 (216)
                      +.+++|+|||++|.||.+++..|+.+|.  +|.+++..                       +.++.+.+++||+||.+.|
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            4578999999855579999999998883  68888543                       1356778999999999988


Q ss_pred             CCC
Q 027976          133 VAN  135 (216)
Q Consensus       133 ~p~  135 (216)
                      .|.
T Consensus        86 ~p~   88 (343)
T 3fi9_A           86 APR   88 (343)
T ss_dssp             ---
T ss_pred             CCC
Confidence            653

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.53  E-value=0.0017  Score=59.60  Aligned_cols=72  Identities=17%  Similarity=0.268  Sum_probs=54.2

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhc---cCCCEEEEecCCCCc--
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT---SEADIVIAAAGVANL--  136 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~---~~ADIVIsatg~p~~--  136 (216)
                      .+|.|||.|.+ |.+++..|++.|.+|++++|+.                   .++.+.+   +++|+||.+++.+..  
T Consensus         3 m~IgvIG~G~m-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~   81 (482)
T 2pgd_A            3 ADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (482)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CeEEEEChHHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHH
Confidence            47999999875 9999999999999999998753                   1234444   489999999987531  


Q ss_pred             --cc--CCcccCCcEEEEeee
Q 027976          137 --VR--GSWLKPGAVVLDVGT  153 (216)
Q Consensus       137 --i~--~~~i~~g~vViDvg~  153 (216)
                        +.  ...++++.+|||++.
T Consensus        82 ~vl~~l~~~l~~g~iII~~s~  102 (482)
T 2pgd_A           82 NFIEKLVPLLDIGDIIIDGGN  102 (482)
T ss_dssp             HHHHHHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHhhcCCCCEEEECCC
Confidence              21  124678899999863

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.53  E-value=0.004  Score=52.80  Aligned_cols=53  Identities=11%  Similarity=0.153  Sum_probs=43.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------------CHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------------~l~~~~~~ADIVIsatg~  133 (216)
                      ++|+|+|++|.+|+.++..|+++|++|+++.|...                         ++.+.++.+|+||+.++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~   89 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF   89 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence            68999999888899999999999999988877532                         134567778888888774

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.53  E-value=0.0024  Score=52.63  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r   39 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYR   39 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcC
Confidence            468999999999999999999999999999999887

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.53  E-value=0.0056  Score=54.11  Aligned_cols=34  Identities=18%  Similarity=0.379  Sum_probs=30.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      +++++|+|+|+|+. |.+++.+|+..|. ++++++.
T Consensus       116 L~~~~VlvvG~Ggl-Gs~va~~La~aGvg~i~lvD~  150 (353)
T 3h5n_A          116 LKNAKVVILGCGGI-GNHVSVILATSGIGEIILIDN  150 (353)
T ss_dssp             HHTCEEEEECCSHH-HHHHHHHHHHHTCSEEEEEEC
T ss_pred             HhCCeEEEECCCHH-HHHHHHHHHhCCCCeEEEECC
Confidence            56899999999996 9999999999996 7999854

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.52  E-value=0.0043  Score=52.04  Aligned_cols=38  Identities=26%  Similarity=0.296  Sum_probs=34.0

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ..+++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        23 ~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~   60 (269)
T 4dmm_A           23 ALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYA   60 (269)
T ss_dssp             -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            35789999999999888899999999999999988766

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.52  E-value=0.0052  Score=53.59  Aligned_cols=53  Identities=21%  Similarity=0.332  Sum_probs=42.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      ++|+|||+|. +|.+++..|+..|. +|.++..+.                          .++ +.+++||+||.++|.
T Consensus         5 ~kI~VIGaG~-vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~   82 (322)
T 1t2d_A            5 AKIVLVGSGM-IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGF   82 (322)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            5899999965 59999999999996 887775431                          244 678999999999986


Q ss_pred             CC
Q 027976          134 AN  135 (216)
Q Consensus       134 p~  135 (216)
                      |.
T Consensus        83 p~   84 (322)
T 1t2d_A           83 TK   84 (322)
T ss_dssp             SS
T ss_pred             CC
Confidence            63

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.52  E-value=0.0043  Score=51.30  Aligned_cols=36  Identities=19%  Similarity=0.259  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      -+|+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   56 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRE   56 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999899999999999999999998764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.51  E-value=0.0043  Score=53.61  Aligned_cols=94  Identities=17%  Similarity=0.136  Sum_probs=64.0

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhh
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQI  120 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~  120 (216)
                      +||....++..|+..+. -.|++|+|.|+|+ +|..+++++...|++|+.+.++.                   .++.+.
T Consensus       148 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~  225 (340)
T 3s2e_A          148 ILCAGVTVYKGLKVTDT-RPGQWVVISGIGG-LGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAW  225 (340)
T ss_dssp             GGTHHHHHHHHHHTTTC-CTTSEEEEECCST-THHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHH
T ss_pred             ccchhHHHHHHHHHcCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHH
Confidence            55655556777755433 4799999999976 59999999999999988875531                   233222


Q ss_pred             c----cCCCEEEEecCCCCccc--CCcccCCcEEEEeeeCC
Q 027976          121 T----SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       121 ~----~~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~~  155 (216)
                      +    ...|++|.++|.+..+.  -+.++++-.++.++...
T Consensus       226 ~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  266 (340)
T 3s2e_A          226 LQKEIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPP  266 (340)
T ss_dssp             HHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCS
T ss_pred             HHHhCCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCC
Confidence            2    25788888888654332  24567777777777543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.51  E-value=0.0024  Score=55.76  Aligned_cols=88  Identities=14%  Similarity=0.095  Sum_probs=58.1

Q ss_pred             HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHH----hhc--
Q 027976           67 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--  121 (216)
Q Consensus        67 ~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~----~~~--  121 (216)
                      ++..|.+..---.|++|+|.|+++.+|..++..+...|++|+++.++.                   .+..    +..  
T Consensus       150 A~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  229 (354)
T 2j8z_A          150 AFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKG  229 (354)
T ss_dssp             HHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             HHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcC
Confidence            444453222224689999999766679999999999999988876541                   1221    222  


Q ss_pred             cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          122 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       122 ~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      +..|++|+++|.+.+ -..+.++++..++.++..
T Consensus       230 ~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~  263 (354)
T 2j8z_A          230 AGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLM  263 (354)
T ss_dssp             SCEEEEEESSCGGGHHHHHHHEEEEEEEEECCCT
T ss_pred             CCceEEEECCCchHHHHHHHhccCCCEEEEEecc
Confidence            247999999987632 122456777777778754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.51  E-value=0.0032  Score=52.92  Aligned_cols=55  Identities=13%  Similarity=0.170  Sum_probs=43.7

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------------------CHHhhccCCCEEEE
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------------NPEQITSEADIVIA  129 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------------~l~~~~~~ADIVIs  129 (216)
                      .++|+|+|++|.+|+.++..|+++|++|+++.|...                              ++.+.++.+|+||+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            578999999888899999999999999988876521                              13456677899998


Q ss_pred             ecCCC
Q 027976          130 AAGVA  134 (216)
Q Consensus       130 atg~p  134 (216)
                      +++..
T Consensus        84 ~a~~~   88 (308)
T 1qyc_A           84 TVGSL   88 (308)
T ss_dssp             CCCGG
T ss_pred             CCcch
Confidence            87743

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.50  E-value=0.0069  Score=49.18  Aligned_cols=53  Identities=21%  Similarity=0.197  Sum_probs=42.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------CHHhhcc----CCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITS----EADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~----~ADIVIsatg~  133 (216)
                      |+++|.|+++-+|+.++..|+++|++|+++.|..+              ++.+.++    ..|+||+..|.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            57999999888999999999999999999987642              1233343    78999988874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.50  E-value=0.0049  Score=51.26  Aligned_cols=53  Identities=9%  Similarity=-0.007  Sum_probs=41.9

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhh----------------ccCCCEEEEecCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQI----------------TSEADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~----------------~~~ADIVIsatg~  133 (216)
                      .++|+|.|+ |.+|+.++..|+++|.+|+.+.|........                ++++|+||.+++.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCc
Confidence            378999999 6679999999999999999998864322110                6778999988874

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.50  E-value=0.0024  Score=54.89  Aligned_cols=87  Identities=14%  Similarity=0.091  Sum_probs=57.7

Q ss_pred             HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHH----hhc--
Q 027976           67 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--  121 (216)
Q Consensus        67 ~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~----~~~--  121 (216)
                      ++..|.+..---.|++|+|.|+++.+|..++.++...|++|+.+.++.                   .+..    +.+  
T Consensus       128 a~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  207 (327)
T 1qor_A          128 VYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGG  207 (327)
T ss_dssp             HHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             HHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCC
Confidence            344454332224699999999766679999999999999988886541                   1221    222  


Q ss_pred             cCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          122 SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       122 ~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                      +..|++|+++| +..+  .-+.++++..++.++..
T Consensus       208 ~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~g~~  241 (327)
T 1qor_A          208 KKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFGNS  241 (327)
T ss_dssp             CCEEEEEECSC-GGGHHHHHHTEEEEEEEEECCCT
T ss_pred             CCceEEEECCc-hHHHHHHHHHhcCCCEEEEEecC
Confidence            24799999998 3332  22456777777888754

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.49  E-value=0.0033  Score=50.92  Aligned_cols=54  Identities=22%  Similarity=0.303  Sum_probs=43.0

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------CHHhhcc------CCCEEEEecCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITS------EADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~------~ADIVIsatg~  133 (216)
                      +|+++|.|+++-+|+.++..|+++|++|.++.|...               ++.+.++      ..|++|+..|.
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag~   76 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGV   76 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcccc
Confidence            689999999999999999999999999998877531               1223333      67999988874

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.49  E-value=0.0044  Score=51.18  Aligned_cols=37  Identities=11%  Similarity=-0.026  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCC---CEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|   ++|+++.|+
T Consensus        18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~   57 (267)
T 1sny_A           18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRN   57 (267)
T ss_dssp             --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecC
Confidence            5789999999999999999999999999   899988775

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.49  E-value=0.0031  Score=52.37  Aligned_cols=38  Identities=16%  Similarity=0.104  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~   40 (252)
T 3h7a_A            3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRN   40 (252)
T ss_dssp             --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999889999999999999999999876

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.48  E-value=0.0029  Score=58.70  Aligned_cols=73  Identities=22%  Similarity=0.153  Sum_probs=54.8

Q ss_pred             CCC-CeEEEEcCCchhHHHHHHHHHhC------CCEEEEEeCCC-------------------CCHHhhccCCCEEEEec
Q 027976           78 IMG-KNAVVIGRSNIVGLPTSLLLQRH------HATVSIVHALT-------------------KNPEQITSEADIVIAAA  131 (216)
Q Consensus        78 l~g-k~v~ViG~gg~vg~~~a~~L~~~------ga~Vti~~~~t-------------------~~l~~~~~~ADIVIsat  131 (216)
                      ++| |+|.|||.|.. |.++|..|.+.      |.+|++..+..                   .++.+.+++||+||.++
T Consensus        51 L~GiKkIgIIGlGsM-G~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaV  129 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLI  129 (525)
T ss_dssp             TTTCSEEEEECCTTH-HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECS
T ss_pred             hcCCCEEEEEeEhHH-HHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECC
Confidence            688 99999999876 99999999998      98888775541                   13567888999999999


Q ss_pred             CCCC---ccc--CCcccCCcEEEEe
Q 027976          132 GVAN---LVR--GSWLKPGAVVLDV  151 (216)
Q Consensus       132 g~p~---~i~--~~~i~~g~vViDv  151 (216)
                      +...   .+.  ...+++|+++...
T Consensus       130 P~~~~~eVl~eI~p~LK~GaILs~A  154 (525)
T 3fr7_A          130 SDAAQADNYEKIFSHMKPNSILGLS  154 (525)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEES
T ss_pred             ChHHHHHHHHHHHHhcCCCCeEEEe
Confidence            8422   222  1235788876554

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.48  E-value=0.0055  Score=51.71  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .++.+|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r   57 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGF   57 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            3688999999999888899999999999999999876

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.48  E-value=0.0026  Score=53.62  Aligned_cols=37  Identities=22%  Similarity=0.162  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++.+|.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRR   61 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4679999999998888999999999999999998775

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.47  E-value=0.0026  Score=53.67  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   65 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARH   65 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999889999999999999999998775

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.47  E-value=0.0043  Score=52.53  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=32.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++++|.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRT   61 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999889999999999999999998775

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.46  E-value=0.0065  Score=53.19  Aligned_cols=56  Identities=21%  Similarity=0.286  Sum_probs=44.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEe
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsa  130 (216)
                      .+..+|.|||+|. +|.+++..|+..|. +|+++.+..                          .+ .+.+++||+||.+
T Consensus         5 m~~~kI~viGaG~-vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d-~~a~~~aDiVIia   82 (324)
T 3gvi_A            5 MARNKIALIGSGM-IGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAND-YAAIEGADVVIVT   82 (324)
T ss_dssp             -CCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS-GGGGTTCSEEEEC
T ss_pred             CcCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCC-HHHHCCCCEEEEc
Confidence            3567899999966 59999999999987 888885542                          13 3789999999999


Q ss_pred             cCCCC
Q 027976          131 AGVAN  135 (216)
Q Consensus       131 tg~p~  135 (216)
                      +|.|.
T Consensus        83 ag~p~   87 (324)
T 3gvi_A           83 AGVPR   87 (324)
T ss_dssp             CSCCC
T ss_pred             cCcCC
Confidence            98653

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.45  E-value=0.0054  Score=52.99  Aligned_cols=54  Identities=19%  Similarity=0.316  Sum_probs=43.2

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg  132 (216)
                      .++|.|||+|. +|.+++..|+..|. +|+++.+..                          .++ +.+++||+||.++|
T Consensus         4 ~~kI~VIGaG~-~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg   81 (317)
T 2ewd_A            4 RRKIAVIGSGQ-IGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITAS   81 (317)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence            46899999976 59999999999997 898886642                          123 56789999999998


Q ss_pred             CCC
Q 027976          133 VAN  135 (216)
Q Consensus       133 ~p~  135 (216)
                      .|.
T Consensus        82 ~p~   84 (317)
T 2ewd_A           82 IPG   84 (317)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.44  E-value=0.0025  Score=55.39  Aligned_cols=93  Identities=11%  Similarity=-0.069  Sum_probs=60.5

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhhc
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT  121 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~  121 (216)
                      |+.+..++.+++..+ ...++.++|.|+++.+|..++.++...|++|+.+.++.                   .++.+.+
T Consensus       147 ~~~~~ta~~~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v  225 (349)
T 3pi7_A          147 IVNPLTAIAMFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATL  225 (349)
T ss_dssp             SHHHHHHHHHHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHH
T ss_pred             cccHHHHHHHHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHH
Confidence            444454555555444 22337777776666679999999999999988876542                   1222222


Q ss_pred             ------cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          122 ------SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       122 ------~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                            +..|++|+++|.+.. -.-+.++++-.++.++..
T Consensus       226 ~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~  265 (349)
T 3pi7_A          226 REVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRL  265 (349)
T ss_dssp             HHHHHHHCCCEEEESSCHHHHHHHHHHSCTTCEEEECCCS
T ss_pred             HHHhcCCCCcEEEECCCChhHHHHHhhhcCCCEEEEEecc
Confidence                  368999999997543 122456788888888854

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.44  E-value=0.0068  Score=49.72  Aligned_cols=54  Identities=15%  Similarity=0.190  Sum_probs=43.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------CHHhhccC----CCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITSE----ADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~~----ADIVIsatg~p  134 (216)
                      |+++|.|+++-+|+.++..|+++|++|+++.|+.+              ++.+.+++    -|++|+..|..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~   73 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLG   73 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            57999999999999999999999999999887642              12344444    49999988853

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.44  E-value=0.0034  Score=50.94  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~   38 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARD   38 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            57899999999999999999999999999998775

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.43  E-value=0.0017  Score=56.44  Aligned_cols=92  Identities=15%  Similarity=0.129  Sum_probs=62.6

Q ss_pred             CCCcHHHHHHHHHHh-----CCCCCCCeEEEEcCCchhHHHHHHHHHhC--CCEEEEEeCCCC--------------CH-
Q 027976           60 IPCTPKGCIELLIRS-----GVEIMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK--------------NP-  117 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~-----~~~l~gk~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t~--------------~l-  117 (216)
                      +||....++..|++.     ++  .|++|+|+|+| .+|..++.++...  |++|+.+.++.+              +. 
T Consensus       148 l~~~~~ta~~al~~~~~~~~~~--~g~~VlV~GaG-~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~  224 (344)
T 2h6e_A          148 LADAGTTSMGAIRQALPFISKF--AEPVVIVNGIG-GLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMK  224 (344)
T ss_dssp             GGTHHHHHHHHHHHHHHHHTTC--SSCEEEEECCS-HHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHH
T ss_pred             hhhhhHHHHHHHHhhhhcccCC--CCCEEEEECCC-HHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccc
Confidence            455555556667665     55  89999999996 5699999888888  999888765421              11 


Q ss_pred             -----Hhhcc---CCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          118 -----EQITS---EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       118 -----~~~~~---~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                           .+.+.   .+|+||.++|.+..+  .-+.++++-.++.++..
T Consensus       225 ~~~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (344)
T 2h6e_A          225 DAESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGME  271 (344)
T ss_dssp             HHHHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             cchHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCC
Confidence                 11121   579999999976332  22456777777777764

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.43  E-value=0.0016  Score=56.73  Aligned_cols=53  Identities=26%  Similarity=0.308  Sum_probs=45.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC-CC-CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA-LT-KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~-~t-~~l~~~~~~ADIVIsatg~  133 (216)
                      .+|+|.|++|.+|+.++..|+++|. +|+.+.+ .+ .++.+.++++|+||+..+.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~   56 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGV   56 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHCSEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhccCCEEEECCcC
Confidence            3799999999999999999999998 9999988 43 3567788899999988874

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.43  E-value=0.0029  Score=53.45  Aligned_cols=38  Identities=24%  Similarity=0.216  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~   49 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRD   49 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            46899999999999989999999999999999998775

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.42  E-value=0.0028  Score=52.77  Aligned_cols=53  Identities=13%  Similarity=0.174  Sum_probs=44.0

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------CHHhhcc--CCCEEEEecCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------NPEQITS--EADIVIAAAGVA  134 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------~l~~~~~--~ADIVIsatg~p  134 (216)
                      +|+|.|++|.+|+.++..|+++|++|+.+.|..-      .+.+.++  ..|+||+..+..
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~~~d~vi~~a~~~   67 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYT   67 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhcCCCEEEECCccc
Confidence            8999999999999999999999999999987542      2445566  589999888754

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.42  E-value=0.0027  Score=52.66  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999998765

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=96.42  E-value=0.0054  Score=52.82  Aligned_cols=57  Identities=18%  Similarity=0.302  Sum_probs=41.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCCC--------------------HHhhcc-----CCCEEEEe
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTKN--------------------PEQITS-----EADIVIAA  130 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~~--------------------l~~~~~-----~ADIVIsa  130 (216)
                      ++++++|+|.|++|.+|+.++..|+++| ++|+++.|....                    +.+.++     +.|+||+.
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~  122 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHE  122 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEEC
Confidence            3578999999999999999999999999 889888765321                    223444     48999988


Q ss_pred             cCC
Q 027976          131 AGV  133 (216)
Q Consensus       131 tg~  133 (216)
                      .+.
T Consensus       123 A~~  125 (357)
T 2x6t_A          123 GAC  125 (357)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            874

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.42  E-value=0.0086  Score=52.50  Aligned_cols=39  Identities=18%  Similarity=0.241  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~   79 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTA   79 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECCh
Confidence            468999999999998889999999999999999987653

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.41  E-value=0.004  Score=52.34  Aligned_cols=36  Identities=19%  Similarity=0.142  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +.+|+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   37 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARR   37 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            478999999998888999999999999999998775

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.40  E-value=0.0074  Score=50.71  Aligned_cols=53  Identities=21%  Similarity=0.138  Sum_probs=41.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHHhhccCCCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~~~ADIVIsatg~p  134 (216)
                      ++|+|.|++|.+|+.++..|+++|++|+++.|...                    ++.+.++. |+||+..+.+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~~~   73 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFAANP   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECCSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECCCCC
Confidence            57999999999999999999999999999876421                    12334444 9999888754

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.38  E-value=0.0055  Score=52.09  Aligned_cols=37  Identities=14%  Similarity=0.186  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEcCCch--hHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNI--VGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~--vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++.  +|++++..|+++|++|.++.|+
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~   66 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQG   66 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECS
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCC
Confidence            589999999999755  7999999999999999888765

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.38  E-value=0.0096  Score=48.67  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~   35 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRN   35 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999999998775

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.38  E-value=0.0052  Score=51.56  Aligned_cols=39  Identities=28%  Similarity=0.396  Sum_probs=35.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   40 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSA   40 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccc
Confidence            468999999999999999999999999999999998764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.37  E-value=0.0074  Score=51.33  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEEcCCc--hhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++  -+|+.++..|+++|++|.++.++
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~   65 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLS   65 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCC
Confidence            458899999999973  45999999999999999998765

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.37  E-value=0.0053  Score=51.34  Aligned_cols=37  Identities=30%  Similarity=0.310  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.+
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~   50 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYA   50 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            3589999999999988999999999999999988654

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.36  E-value=0.0039  Score=52.64  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=35.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|+||.++|-|++.=+|+++|..|+++|++|.++.++
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~   42 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARR   42 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            68999999999999889999999999999999999876

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.35  E-value=0.0043  Score=53.81  Aligned_cols=87  Identities=15%  Similarity=0.108  Sum_probs=57.4

Q ss_pred             HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHH----hhc--
Q 027976           67 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--  121 (216)
Q Consensus        67 ~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~----~~~--  121 (216)
                      ++..|++..---.|++|+|+|+++.+|..++.++...|++|+.+.++.                   .++.    +..  
T Consensus       154 a~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~  233 (343)
T 2eih_A          154 AWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGG  233 (343)
T ss_dssp             HHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTT
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCC
Confidence            344554432223689999999966679999999999999988876541                   1221    222  


Q ss_pred             cCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          122 SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       122 ~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                      +..|++|+++| +..+  .-+.++++-.++.++..
T Consensus       234 ~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~g~~  267 (343)
T 2eih_A          234 KGADKVVDHTG-ALYFEGVIKATANGGRIAIAGAS  267 (343)
T ss_dssp             TCEEEEEESSC-SSSHHHHHHHEEEEEEEEESSCC
T ss_pred             CCceEEEECCC-HHHHHHHHHhhccCCEEEEEecC
Confidence            25799999999 4332  22446676677777754

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.35  E-value=0.0085  Score=50.98  Aligned_cols=56  Identities=21%  Similarity=0.222  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------------------CHHhhcc--CCCEEE
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------------NPEQITS--EADIVI  128 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------------~l~~~~~--~ADIVI  128 (216)
                      .+++|+|.|++|.+|+.++..|+++|++|+++.|...                            ++.+.++  ..|+||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            4689999999998999999999999999999866421                            1234455  789999


Q ss_pred             EecCCC
Q 027976          129 AAAGVA  134 (216)
Q Consensus       129 satg~p  134 (216)
                      +..+..
T Consensus        84 h~A~~~   89 (341)
T 3enk_A           84 HFAALK   89 (341)
T ss_dssp             ECCCCC
T ss_pred             ECcccc
Confidence            888753

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.35  E-value=0.0081  Score=52.66  Aligned_cols=94  Identities=18%  Similarity=0.184  Sum_probs=60.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC---------------------CCH
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT---------------------KNP  117 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t---------------------~~l  117 (216)
                      +||....++..+.+..-.-.|++|+|+|+|+ +|..++.++...|+ +|+.+.++.                     .++
T Consensus       173 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  251 (374)
T 1cdo_A          173 LGCGVSTGFGAAVNTAKVEPGSTCAVFGLGA-VGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPI  251 (374)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCH
T ss_pred             hccHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhH
Confidence            4444444444443332234689999999865 69999998989999 787775432                     122


Q ss_pred             Hhhcc-----CCCEEEEecCCCCcc--cCCcccCC-cEEEEeeeC
Q 027976          118 EQITS-----EADIVIAAAGVANLV--RGSWLKPG-AVVLDVGTC  154 (216)
Q Consensus       118 ~~~~~-----~ADIVIsatg~p~~i--~~~~i~~g-~vViDvg~~  154 (216)
                      .+.++     .+|+||+++|.+..+  --+.++++ -.++.++..
T Consensus       252 ~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          252 SQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             HHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             HHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCC
Confidence            22222     479999999975433  23567777 777777754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.34  E-value=0.0082  Score=52.58  Aligned_cols=94  Identities=16%  Similarity=0.136  Sum_probs=60.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC---------------------CCHH
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT---------------------KNPE  118 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t---------------------~~l~  118 (216)
                      ||....++..+.+..---.|++|+|+|+|+ +|..++.++...|+ +|+.+.++.                     .++.
T Consensus       173 ~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~  251 (373)
T 1p0f_A          173 GCGFATGYGAAVNTAKVTPGSTCAVFGLGG-VGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIY  251 (373)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHH
T ss_pred             hhHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHH
Confidence            343333444443332234689999999865 69999988888898 787775431                     1232


Q ss_pred             hhcc-----CCCEEEEecCCCCcc--cCCcccCC-cEEEEeeeCC
Q 027976          119 QITS-----EADIVIAAAGVANLV--RGSWLKPG-AVVLDVGTCP  155 (216)
Q Consensus       119 ~~~~-----~ADIVIsatg~p~~i--~~~~i~~g-~vViDvg~~~  155 (216)
                      +.++     .+|+||.++|.+..+  .-+.++++ -.++.++...
T Consensus       252 ~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~  296 (373)
T 1p0f_A          252 EVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLAS  296 (373)
T ss_dssp             HHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             HHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCC
Confidence            2222     479999999975433  23567777 7777887543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.34  E-value=0.0031  Score=52.60  Aligned_cols=38  Identities=32%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   41 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARD   41 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999998765

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=96.34  E-value=0.0075  Score=51.55  Aligned_cols=92  Identities=13%  Similarity=0.117  Sum_probs=56.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHH---h-----------h-ccCC
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPE---Q-----------I-TSEA  124 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~---~-----------~-~~~A  124 (216)
                      +|+....++..|+ ..---.|++|+|+|+ |.+|..++.++...|++|+.+. +.+.++   +           . -+.+
T Consensus       124 l~~~~~ta~~al~-~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~  200 (315)
T 3goh_A          124 LPCPLLTAWQAFE-KIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKY  200 (315)
T ss_dssp             SHHHHHHHHHHHT-TSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCE
T ss_pred             CccHHHHHHHHHh-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCc
Confidence            3444444556663 333347999999999 5569999999988999987776 333221   1           1 1457


Q ss_pred             CEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          125 DIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       125 DIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      |++|.++|.+.. -.-+.++++-.++.++..
T Consensus       201 Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~  231 (315)
T 3goh_A          201 FAIFDAVNSQNAAALVPSLKANGHIICIQDR  231 (315)
T ss_dssp             EEEECC-------TTGGGEEEEEEEEEECCC
T ss_pred             cEEEECCCchhHHHHHHHhcCCCEEEEEeCC
Confidence            999999997654 223556777777777643

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=96.33  E-value=0.0061  Score=52.01  Aligned_cols=59  Identities=15%  Similarity=0.375  Sum_probs=46.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCC-------CEEEEEeCCCC---------------------CHHhhc-cCCCE
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHALTK---------------------NPEQIT-SEADI  126 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-------a~Vti~~~~t~---------------------~l~~~~-~~ADI  126 (216)
                      ..+++++|+|.|++|.+|+.++..|+++|       ++|+++.|...                     .+.+.+ ...|+
T Consensus        10 ~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~   89 (342)
T 2hrz_A           10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVEARPDV   89 (342)
T ss_dssp             SCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHHTCCSE
T ss_pred             CCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHhcCCCE
Confidence            45789999999998889999999999999       78888866421                     133455 47999


Q ss_pred             EEEecCCC
Q 027976          127 VIAAAGVA  134 (216)
Q Consensus       127 VIsatg~p  134 (216)
                      ||...+..
T Consensus        90 vih~A~~~   97 (342)
T 2hrz_A           90 IFHLAAIV   97 (342)
T ss_dssp             EEECCCCC
T ss_pred             EEECCccC
Confidence            99888743

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.33  E-value=0.0072  Score=52.99  Aligned_cols=95  Identities=19%  Similarity=0.192  Sum_probs=61.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC---------------------CCH
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT---------------------KNP  117 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t---------------------~~l  117 (216)
                      +||....++..+.+..---.|++|+|+|+|+ +|..++.++...|+ +|+.+.++.                     .++
T Consensus       172 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  250 (374)
T 2jhf_A          172 IGCGFSTGYGSAVKVAKVTQGSTCAVFGLGG-VGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPI  250 (374)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCH
T ss_pred             hccHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhH
Confidence            4443344444443332234789999999865 69999998989999 787775432                     122


Q ss_pred             Hhhcc-----CCCEEEEecCCCCcc--cCCcccCC-cEEEEeeeCC
Q 027976          118 EQITS-----EADIVIAAAGVANLV--RGSWLKPG-AVVLDVGTCP  155 (216)
Q Consensus       118 ~~~~~-----~ADIVIsatg~p~~i--~~~~i~~g-~vViDvg~~~  155 (216)
                      .+.++     .+|+||.++|.+..+  .-+.++++ -.++.++...
T Consensus       251 ~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~  296 (374)
T 2jhf_A          251 QEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPP  296 (374)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCC
T ss_pred             HHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCC
Confidence            22222     479999999975433  23557777 7777887543

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=96.33  E-value=0.0088  Score=52.15  Aligned_cols=94  Identities=11%  Similarity=0.065  Sum_probs=59.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC-----------------------
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-----------------------  116 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-----------------------  116 (216)
                      +||.+..++..|.+..---.|++|+|+|++|.+|..+++++...|+++.++.+..++                       
T Consensus       148 l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~  227 (357)
T 1zsy_A          148 LGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELR  227 (357)
T ss_dssp             TTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHH
T ss_pred             hcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcch
Confidence            455555566666654333479999999996667999998888899985554322110                       


Q ss_pred             ---HHhhcc---CCCEEEEecCCCCcc-cCCcccCCcEEEEeee
Q 027976          117 ---PEQITS---EADIVIAAAGVANLV-RGSWLKPGAVVLDVGT  153 (216)
Q Consensus       117 ---l~~~~~---~ADIVIsatg~p~~i-~~~~i~~g~vViDvg~  153 (216)
                         +.+...   .+|+||.++|.+... .-+.++++-.++.+|.
T Consensus       228 ~~~~~~~~~~~~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~  271 (357)
T 1zsy_A          228 RPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGG  271 (357)
T ss_dssp             SGGGGGTTSSSCCCSEEEESSCHHHHHHHHTTSCTTCEEEECCC
T ss_pred             HHHHHHHHhCCCCceEEEECCCcHHHHHHHHhhCCCCEEEEEec
Confidence               111121   368888888754431 2355677767777764

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.32  E-value=0.0062  Score=49.31  Aligned_cols=36  Identities=17%  Similarity=0.144  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~  113 (216)
                      +++|+++|.|+++-+|+.++..|+++|  ++|+++.|+
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~   38 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecC
Confidence            368999999999999999999999999  899988765

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.32  E-value=0.0061  Score=52.60  Aligned_cols=74  Identities=20%  Similarity=0.293  Sum_probs=50.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------------CCHHhhccCCCEEE
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------KNPEQITSEADIVI  128 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------~~l~~~~~~ADIVI  128 (216)
                      .+...++|.|||+|.. |.+++..|++.|.+|+++ ++.                           .+. +.++.+|+||
T Consensus        15 ~~~~~~kI~IiGaGa~-G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   91 (318)
T 3hwr_A           15 LYFQGMKVAIMGAGAV-GCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLVL   91 (318)
T ss_dssp             -----CEEEEESCSHH-HHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEEE
T ss_pred             hhccCCcEEEECcCHH-HHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEEE
Confidence            3456789999999875 999999999999999988 432                           122 3457899999


Q ss_pred             EecCCCCc---cc--CCcccCCcEEEEee
Q 027976          129 AAAGVANL---VR--GSWLKPGAVVLDVG  152 (216)
Q Consensus       129 satg~p~~---i~--~~~i~~g~vViDvg  152 (216)
                      .+++....   +.  ...++++.+|+.+.
T Consensus        92 lavk~~~~~~~l~~l~~~l~~~~~iv~~~  120 (318)
T 3hwr_A           92 FCVKSTDTQSAALAMKPALAKSALVLSLQ  120 (318)
T ss_dssp             ECCCGGGHHHHHHHHTTTSCTTCEEEEEC
T ss_pred             EEcccccHHHHHHHHHHhcCCCCEEEEeC
Confidence            99986542   11  23456677777663

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.32  E-value=0.002  Score=53.79  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   43 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRS   43 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999889999999999999999998765

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.32  E-value=0.0056  Score=53.71  Aligned_cols=57  Identities=18%  Similarity=0.305  Sum_probs=44.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-----------------------CCHHhhccCCCEEEEec
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------------------KNPEQITSEADIVIAAA  131 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-----------------------~~l~~~~~~ADIVIsat  131 (216)
                      +-.+++|.|+|+|. +|.+++..|+..+.  ++.+++...                       .+..+.+++||+||.+.
T Consensus         6 ~~~~~kV~ViGaG~-vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~a   84 (326)
T 3vku_A            6 DKDHQKVILVGDGA-VGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITA   84 (326)
T ss_dssp             -CCCCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred             cCCCCEEEEECCCH-HHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECC
Confidence            45678999999976 59999999998885  788886531                       12257899999999998


Q ss_pred             CCC
Q 027976          132 GVA  134 (216)
Q Consensus       132 g~p  134 (216)
                      |.|
T Consensus        85 g~~   87 (326)
T 3vku_A           85 GAP   87 (326)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            865

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.31  E-value=0.0057  Score=53.77  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=62.4

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC---------------------CCH
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT---------------------KNP  117 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t---------------------~~l  117 (216)
                      +||.....+..+.+..---.|.+|+|+|+|+ +|..++.++...|+ +|+.+.++.                     .++
T Consensus       174 l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~  252 (378)
T 3uko_A          174 LGCGVPTGLGAVWNTAKVEPGSNVAIFGLGT-VGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPI  252 (378)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCCEEEECCSH-HHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCH
T ss_pred             hhhhHHHHHHHHHhhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhH
Confidence            4554444455453333334699999999965 69999998988998 688775432                     122


Q ss_pred             Hhhcc-----CCCEEEEecCCCCcc--cCCcccCC-cEEEEeeeCC
Q 027976          118 EQITS-----EADIVIAAAGVANLV--RGSWLKPG-AVVLDVGTCP  155 (216)
Q Consensus       118 ~~~~~-----~ADIVIsatg~p~~i--~~~~i~~g-~vViDvg~~~  155 (216)
                      .+.++     .+|+||.++|.+..+  .-+.++++ -.++.+|...
T Consensus       253 ~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~  298 (378)
T 3uko_A          253 QEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA  298 (378)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred             HHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccC
Confidence            22222     389999999986543  23567885 7788888643

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.31  E-value=0.0036  Score=53.47  Aligned_cols=38  Identities=16%  Similarity=0.306  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~   74 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARS   74 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            56899999999999889999999999999999998775

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.31  E-value=0.0032  Score=52.42  Aligned_cols=37  Identities=32%  Similarity=0.340  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   41 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRN   41 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999999775

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.31  E-value=0.0032  Score=51.31  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999988775

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.31  E-value=0.0074  Score=51.88  Aligned_cols=36  Identities=33%  Similarity=0.224  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++++|+|.|++|.+|+.++..|+++|++|+++.|.
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   42 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLT   42 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCC
Confidence            468999999999999999999999999999988765

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.31  E-value=0.0033  Score=52.46  Aligned_cols=53  Identities=13%  Similarity=0.137  Sum_probs=41.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------CHHhhccC-CCEEEEecC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQITSE-ADIVIAAAG  132 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~l~~~~~~-ADIVIsatg  132 (216)
                      ++++|+|.|+ |.+|+.++..|+++|.+|+.+.|...                 .+.+.++. +|+||...+
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            4678999997 56799999999999999999877531                 23344555 899998775

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.30  E-value=0.0095  Score=49.98  Aligned_cols=53  Identities=19%  Similarity=0.100  Sum_probs=43.0

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCC-----------------------CHHhhccCCCEEEEecC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-----------------------NPEQITSEADIVIAAAG  132 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~-----------------------~l~~~~~~ADIVIsatg  132 (216)
                      .|+++|.|++|.+|+.++..|+++| ++|+.+.|+..                       ++.+.++.+|+||+.++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            5789999998889999999999988 89998877532                       13456777888888776

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.30  E-value=0.0057  Score=51.43  Aligned_cols=55  Identities=11%  Similarity=0.106  Sum_probs=44.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHHhhccCCCEEEEe
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVIAA  130 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------~l~~~~~~ADIVIsa  130 (216)
                      .++|+|+|++|.+|+.++..|+++|++|+++.|...                             ++.+.++.+|+||+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            478999999888999999999999999998877521                             234667788999988


Q ss_pred             cCCC
Q 027976          131 AGVA  134 (216)
Q Consensus       131 tg~p  134 (216)
                      ++..
T Consensus        84 a~~~   87 (313)
T 1qyd_A           84 LAGG   87 (313)
T ss_dssp             CCCS
T ss_pred             Cccc
Confidence            7743

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.29  E-value=0.0087  Score=51.93  Aligned_cols=124  Identities=16%  Similarity=0.070  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCchhHHH-HHHHHHhCCCEEEEEeCCCC-CHHhhccCCCEEEEecCCCCcccCCccc---CCcEEEEeeeC
Q 027976           80 GKNAVVIGRSNIVGLP-TSLLLQRHHATVSIVHALTK-NPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTC  154 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~-~a~~L~~~ga~Vti~~~~t~-~l~~~~~~ADIVIsatg~p~~i~~~~i~---~g~vViDvg~~  154 (216)
                      .|++.+||.|++ |++ +|.+|.++|++|+++++... ...+.+++..+-+. .|.    .++.+.   .+.+|+--+++
T Consensus         4 ~~~i~~iGiGg~-Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~-~g~----~~~~l~~~~~d~vV~Spgi~   77 (326)
T 3eag_A            4 MKHIHIIGIGGT-FMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVY-EGF----DAAQLDEFKADVYVIGNVAK   77 (326)
T ss_dssp             CCEEEEESCCSH-HHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEE-ESC----CGGGGGSCCCSEEEECTTCC
T ss_pred             CcEEEEEEECHH-HHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEE-CCC----CHHHcCCCCCCEEEECCCcC
Confidence            589999999998 995 89999999999999988642 23333333233222 121    112221   23445444444


Q ss_pred             CccCCCCCCCCCCCeEecccChHH-HhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976          155 PVDVSVDPSCEYGYRLMGDVCYEE-AMRLASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~l~GDvd~~~-~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      ++..........+-+++++.++-. ...+...+.-|-|--|.=|+..|+.++++..
T Consensus        78 ~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           78 RGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             TTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            321000000001235777776422 1011112223557889999999999988764

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.29  E-value=0.0076  Score=51.38  Aligned_cols=36  Identities=19%  Similarity=0.102  Sum_probs=29.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|+|+|.|++|.+|+.++..|+++|++|+.+.|+
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~   38 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRD   38 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECC
Confidence            368999999999999999999999999998876553

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.28  E-value=0.0035  Score=51.65  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   38 (245)
T 1uls_A            2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (245)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999989999999999999999998775

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.28  E-value=0.0036  Score=51.56  Aligned_cols=38  Identities=24%  Similarity=0.206  Sum_probs=34.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   41 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDR   41 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            57899999999999999999999999999999987753

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.28  E-value=0.0054  Score=50.40  Aligned_cols=37  Identities=19%  Similarity=0.287  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   47 (265)
T 1h5q_A           11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRS   47 (265)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCc
Confidence            5789999999999999999999999999999998874

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=96.27  E-value=0.0081  Score=50.69  Aligned_cols=57  Identities=16%  Similarity=0.145  Sum_probs=43.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------CHHhhccC--CCEEEEecCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQITSE--ADIVIAAAGV  133 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~l~~~~~~--ADIVIsatg~  133 (216)
                      .-+-++|+|.|++|.+|+.++..|+++|++|+++.|...                 .+.+.++.  .|+||...+.
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   84 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAK   84 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence            346789999999999999999999999999998877531                 13344544  7999988874

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=96.27  E-value=0.0045  Score=55.42  Aligned_cols=71  Identities=30%  Similarity=0.354  Sum_probs=51.8

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHHhhccCCCEEEE
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQITSEADIVIA  129 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------~~l~~~~~~ADIVIs  129 (216)
                      +|.|||.|. +|.+++..|++ |.+|+.++++.                                .+..+.+++||+||.
T Consensus         2 kI~VIG~G~-vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            2 KIAVAGSGY-VGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             EEEEECCSH-HHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCCH-HHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            689999977 59999999998 99999997642                                123355678999999


Q ss_pred             ecCCCC----------ccc------CCcccCCcEEEEeeeCC
Q 027976          130 AAGVAN----------LVR------GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       130 atg~p~----------~i~------~~~i~~g~vViDvg~~~  155 (216)
                      +++.|.          .+.      .. ++++.+|++.+.++
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~  120 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIP  120 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCC
T ss_pred             ecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCC
Confidence            999762          110      12 57888998854443

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.27  E-value=0.0034  Score=51.95  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   45 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRN   45 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999888999999999999999998765

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.27  E-value=0.0027  Score=53.35  Aligned_cols=38  Identities=21%  Similarity=0.174  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   44 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRN   44 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999999989999999999999999998765

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.26  E-value=0.0056  Score=53.24  Aligned_cols=94  Identities=21%  Similarity=0.184  Sum_probs=63.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHH-
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPE-  118 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~-  118 (216)
                      +|+....++..++..++ -.|.+|+|+|+|+ +|..+++++...|+ +|+.+.+..                   .++. 
T Consensus       148 ~~~~~~ta~~al~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  225 (352)
T 3fpc_A          148 IPDMMTTGFHGAELANI-KLGDTVCVIGIGP-VGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVE  225 (352)
T ss_dssp             TTTHHHHHHHHHHHTTC-CTTCCEEEECCSH-HHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHH
T ss_pred             ccchhHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHH
Confidence            44444445556655443 4689999999865 59999998888999 688876542                   1222 


Q ss_pred             ---hhcc--CCCEEEEecCCCCcc--cCCcccCCcEEEEeeeCC
Q 027976          119 ---QITS--EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       119 ---~~~~--~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~~  155 (216)
                         +...  .+|+||.++|.+..+  .-+.++++-.++.++...
T Consensus       226 ~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~  269 (352)
T 3fpc_A          226 QILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLG  269 (352)
T ss_dssp             HHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             HHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccC
Confidence               2222  489999999987543  235677887788887653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.24  E-value=0.0052  Score=50.40  Aligned_cols=36  Identities=25%  Similarity=0.197  Sum_probs=29.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|++ |+.|.++.|+
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~   37 (245)
T 3e9n_A            2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRN   37 (245)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESC
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCC
Confidence            46799999999999899999999987 8898888775

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.24  E-value=0.003  Score=51.72  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~   47 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRT   47 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecC
Confidence            5789999999999889999999999999999988765

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.24  E-value=0.0065  Score=53.69  Aligned_cols=72  Identities=8%  Similarity=0.074  Sum_probs=55.4

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHHhhccCCCEEEEec
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAA  131 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~ADIVIsat  131 (216)
                      -.+|.|||+|.. |.+++..|++.|.+|++..++.                            .++.+.+++||+||.++
T Consensus        29 ~mkI~VIGaG~m-G~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           29 KHPIAILGAGSW-GTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CSCEEEECCSHH-HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             CCeEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            468999999875 9999999999999999997641                            24567788999999999


Q ss_pred             CCCCc---cc--CCcccCCcEEEEee
Q 027976          132 GVANL---VR--GSWLKPGAVVLDVG  152 (216)
Q Consensus       132 g~p~~---i~--~~~i~~g~vViDvg  152 (216)
                      +....   +.  ..+++++.+|+++.
T Consensus       108 p~~~~~~vl~~i~~~l~~~~ivvs~~  133 (356)
T 3k96_A          108 PSFAFHEVITRMKPLIDAKTRIAWGT  133 (356)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            85421   11  23467788888874

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.24  E-value=0.0054  Score=48.58  Aligned_cols=55  Identities=11%  Similarity=0.045  Sum_probs=42.2

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCCC-----------CHH--hhccC--CCEEEEecCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK-----------NPE--QITSE--ADIVIAAAGV  133 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~-----------~l~--~~~~~--ADIVIsatg~  133 (216)
                      .+++++|.|++|.+|+.++..|+++|.  +|+++.|+..           |+.  +.+++  .|+||+++|.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a~~   75 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGT   75 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhhhcEEEECeee
Confidence            468999999999999999999999998  8988876532           221  12222  7999988874

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.24  E-value=0.0052  Score=55.48  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ++++|+++|||.|++ |+++|..|+++|++|+.+++..
T Consensus         2 ~~~~~~v~viG~G~~-G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             CCTTCCEEEECCHHH-HHHHHHHHHTTTCCCEEEESSS
T ss_pred             CCCCCEEEEEeecHH-HHHHHHHHHhCCCEEEEEECCC
Confidence            467899999999998 9999999999999999998753

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.24  E-value=0.0022  Score=54.97  Aligned_cols=89  Identities=22%  Similarity=0.183  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhCCCCC-CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHh--hc-------------------c
Q 027976           65 KGCIELLIRSGVEIM-GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQ--IT-------------------S  122 (216)
Q Consensus        65 ~g~~~~L~~~~~~l~-gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~--~~-------------------~  122 (216)
                      +..+..+++.++... |+ |+|.|++|.+|..+++++...|++|+.+.++.+.++.  .+                   .
T Consensus       132 ~~al~~~~~~~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~  210 (324)
T 3nx4_A          132 MLCVMALEDAGIRPQDGE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQ  210 (324)
T ss_dssp             HHHHHHHHHTTCCGGGCC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCC
T ss_pred             HHHHHHhhhcccCCCCCe-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCC
Confidence            333444455544432 45 9999996667999999999999998887654322110  00                   1


Q ss_pred             CCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          123 EADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       123 ~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      ..|++|.++|.+.+ -.-+.++++-.++.++..
T Consensus       211 ~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          211 LWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             CEEEEEESSCHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             CccEEEECCCcHHHHHHHHHHhcCCEEEEEecC
Confidence            35667777665421 122445666667777654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.23  E-value=0.0059  Score=50.49  Aligned_cols=34  Identities=26%  Similarity=0.257  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   35 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN   35 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999889999999999999999988764

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.23  E-value=0.012  Score=51.30  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-------------------CCC
Q 027976           57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------TKN  116 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-------------------t~~  116 (216)
                      +...||=+.+ ++.+.|+.+ +++|++++++|-++.|++.++..+...|++|+++...                   +.+
T Consensus       131 ~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d  209 (309)
T 4f2g_A          131 NEYHPCQVLADIFTYYEHRG-PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDD  209 (309)
T ss_dssp             SSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSS
T ss_pred             CccCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcC
Confidence            4557887777 445555554 7999999999999999999999999999999998432                   246


Q ss_pred             HHhhccCCCEEEEec
Q 027976          117 PEQITSEADIVIAAA  131 (216)
Q Consensus       117 l~~~~~~ADIVIsat  131 (216)
                      +.+.+++||+|++-+
T Consensus       210 ~~eav~~aDvvyt~~  224 (309)
T 4f2g_A          210 PNEACKGADLVTTDV  224 (309)
T ss_dssp             HHHHTTTCSEEEECC
T ss_pred             HHHHhcCCCEEEecc
Confidence            788999999999754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.22  E-value=0.012  Score=51.60  Aligned_cols=93  Identities=19%  Similarity=0.198  Sum_probs=60.2

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC---------------------CCH
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT---------------------KNP  117 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t---------------------~~l  117 (216)
                      +||....++..+.+..-.-.|++|+|+|+|+ +|..+++++...|+ +|+.+.++.                     .++
T Consensus       176 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~  254 (376)
T 1e3i_A          176 IGCGFSSGYGAAINTAKVTPGSTCAVFGLGC-VGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPV  254 (376)
T ss_dssp             GGTHHHHHHHHHHTTSCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCH
T ss_pred             hccHHHHHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchH
Confidence            4554444444443332234689999999865 69999998888999 787775431                     122


Q ss_pred             Hhhcc-----CCCEEEEecCCCCcc--cCCcccCC-cEEEEeee
Q 027976          118 EQITS-----EADIVIAAAGVANLV--RGSWLKPG-AVVLDVGT  153 (216)
Q Consensus       118 ~~~~~-----~ADIVIsatg~p~~i--~~~~i~~g-~vViDvg~  153 (216)
                      .+.++     .+|+||.++|.+..+  --+.++++ -.++-++.
T Consensus       255 ~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          255 QDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             HHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECC
Confidence            22222     479999999975433  23567777 77777776

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.21  E-value=0.003  Score=52.98  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~   63 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLA   63 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999989999999999999999999775

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.21  E-value=0.004  Score=52.10  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~   39 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDRE   39 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999989999999999999999998775

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.21  E-value=0.0077  Score=52.01  Aligned_cols=51  Identities=16%  Similarity=0.307  Sum_probs=41.6

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCC--------------------------CCCHHhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL--------------------------TKNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~--------------------------t~~l~~~~~~ADIVIsatg~  133 (216)
                      +|.|+|+|. +|.+++..|+..+.  +|++..+.                          +.+ .+.+++||+||.+.|.
T Consensus         2 kI~ViGaG~-vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            689999966 59999999998886  78888553                          124 6789999999999986


Q ss_pred             C
Q 027976          134 A  134 (216)
Q Consensus       134 p  134 (216)
                      |
T Consensus        80 ~   80 (294)
T 1oju_A           80 A   80 (294)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.21  E-value=0.0073  Score=49.07  Aligned_cols=38  Identities=26%  Similarity=0.266  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 1cyd_A            3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   40 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999889999999999999999988765

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.20  E-value=0.011  Score=51.47  Aligned_cols=74  Identities=14%  Similarity=0.049  Sum_probs=59.2

Q ss_pred             CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------CCCHHh
Q 027976           57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------TKNPEQ  119 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------t~~l~~  119 (216)
                      +...||=+.+ ++.+.++. -.++|.+++++|-++.|++.++..|...|++|+++...                +.++.+
T Consensus       131 ~~~HPtQaLaDl~Ti~e~~-g~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~e  209 (301)
T 2ef0_A          131 DRAHPLQALADLLTLKEVF-GGLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKE  209 (301)
T ss_dssp             SSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHH
T ss_pred             CccCchHHHHHHHHHHHHh-CCcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHH
Confidence            4567888888 44444444 47999999999998888999999999999999998543                246778


Q ss_pred             hccCCCEEEEec
Q 027976          120 ITSEADIVIAAA  131 (216)
Q Consensus       120 ~~~~ADIVIsat  131 (216)
                      .+++||+|.+-.
T Consensus       210 av~~aDvvy~~~  221 (301)
T 2ef0_A          210 AALGAHALYTDV  221 (301)
T ss_dssp             HHTTCSEEEECC
T ss_pred             HhcCCCEEEecC
Confidence            999999999743

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.20  E-value=0.0041  Score=52.45  Aligned_cols=37  Identities=16%  Similarity=0.229  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   38 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKS   38 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            4789999999999989999999999999999999775

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.19  E-value=0.0058  Score=50.74  Aligned_cols=69  Identities=16%  Similarity=0.187  Sum_probs=50.0

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC--C------------CCHHhhccCCCEEEEecCCCCc---cc--CCcc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--T------------KNPEQITSEADIVIAAAGVANL---VR--GSWL  142 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~--t------------~~l~~~~~~ADIVIsatg~p~~---i~--~~~i  142 (216)
                      +|.|||.|.+ |.+++..|++.|.+|+++++.  .            .+..+.++++|+||.+++.+..   +.  .+.+
T Consensus         2 ~I~iIG~G~m-G~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~~   80 (264)
T 1i36_A            2 RVGFIGFGEV-AQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (264)
T ss_dssp             EEEEESCSHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             eEEEEechHH-HHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCcCCHHHHHhcCCEEEEECCCHHHHHHHHHHHHhc
Confidence            6899999876 999999999999999987662  1            1334567899999999986531   11  1223


Q ss_pred             cCCcEEEEeee
Q 027976          143 KPGAVVLDVGT  153 (216)
Q Consensus       143 ~~g~vViDvg~  153 (216)
                      ++  +++|+..
T Consensus        81 ~~--~vi~~s~   89 (264)
T 1i36_A           81 RG--IYVDINN   89 (264)
T ss_dssp             CS--EEEECSC
T ss_pred             Cc--EEEEccC
Confidence            44  8888853

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.19  E-value=0.0054  Score=53.72  Aligned_cols=96  Identities=16%  Similarity=0.137  Sum_probs=62.1

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHH
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPE  118 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~  118 (216)
                      .+||....++..+.+..---.|++|+|+|+|+ +|..++.++...|+ +|+.+.++.                   .++.
T Consensus       170 ~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~  248 (371)
T 1f8f_A          170 PLGCGIQTGAGACINALKVTPASSFVTWGAGA-VGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPV  248 (371)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEESCSH-HHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHH
T ss_pred             HhcchHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHH
Confidence            45555445555563332234689999999865 69999988888898 577765431                   2222


Q ss_pred             hhcc-----CCCEEEEecCCCCcc--cCCcccCCcEEEEeeeCC
Q 027976          119 QITS-----EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       119 ~~~~-----~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~~  155 (216)
                      +.++     .+|+||.++|.+..+  --+.++++-.++.++...
T Consensus       249 ~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  292 (371)
T 1f8f_A          249 AAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQ  292 (371)
T ss_dssp             HHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCS
T ss_pred             HHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCC
Confidence            2222     479999999875433  235677777777787643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.18  E-value=0.002  Score=56.00  Aligned_cols=94  Identities=20%  Similarity=0.103  Sum_probs=58.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------CCCHHhh----
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------TKNPEQI----  120 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------t~~l~~~----  120 (216)
                      |+....+...|.+..---.|++|+|+|+++.+|..++.++...|++|+.+.+.                ..++.+.    
T Consensus       132 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~  211 (343)
T 3gaz_A          132 PLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATARGSDLEYVRDLGATPIDASREPEDYAAEH  211 (343)
T ss_dssp             HHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTSEEEETTSCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCCEeccCCCHHHHHHHH
Confidence            43333344455222223479999999976667999999999999998777221                1122221    


Q ss_pred             c--cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          121 T--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       121 ~--~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      .  +..|++|+++|.+.+ -.-+.++++-.++.++..
T Consensus       212 ~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~  248 (343)
T 3gaz_A          212 TAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGW  248 (343)
T ss_dssp             HTTSCEEEEEESSCTHHHHHHHHHEEEEEEEEESCCC
T ss_pred             hcCCCceEEEECCCcHHHHHHHHHHhcCCeEEEEccc
Confidence            1  257999999986432 123456776667776643

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.18  E-value=0.011  Score=51.64  Aligned_cols=94  Identities=17%  Similarity=0.152  Sum_probs=60.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC---------------------CCH
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT---------------------KNP  117 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t---------------------~~l  117 (216)
                      +||....++..+.+..-.-.|++|+|+|+|+ +|..+++++...|+ +|+.+.++.                     .++
T Consensus       171 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  249 (373)
T 2fzw_A          171 LGCGISTGYGAAVNTAKLEPGSVCAVFGLGG-VGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPI  249 (373)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCH
T ss_pred             hccHHHHHHHHHHhhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccH
Confidence            4443333444443332234689999999865 69999998888998 787775431                     122


Q ss_pred             Hhhcc-----CCCEEEEecCCCCcc--cCCcccCC-cEEEEeeeC
Q 027976          118 EQITS-----EADIVIAAAGVANLV--RGSWLKPG-AVVLDVGTC  154 (216)
Q Consensus       118 ~~~~~-----~ADIVIsatg~p~~i--~~~~i~~g-~vViDvg~~  154 (216)
                      .+.++     .+|+||.++|.+..+  .-+.++++ -.++.++..
T Consensus       250 ~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~  294 (373)
T 2fzw_A          250 QEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVA  294 (373)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             HHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecC
Confidence            22222     479999999975433  23567887 778888754

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.17  E-value=0.0055  Score=50.41  Aligned_cols=36  Identities=31%  Similarity=0.277  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +.+|+++|.|+++-+|++++..|+++|++|.++.+.
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~   37 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAG   37 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999999889999999999999999887553

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.16  E-value=0.013  Score=49.81  Aligned_cols=53  Identities=23%  Similarity=0.156  Sum_probs=42.0

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHHhhccCCCEEEEec
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAA  131 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~ADIVIsat  131 (216)
                      +|+|+|.|++|.+|+.++..|+++|++|+++.|+.                            ..+.+.++.+|+||...
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   88 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA   88 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence            78999999999999999999999999988764431                            12345667789999766


Q ss_pred             C
Q 027976          132 G  132 (216)
Q Consensus       132 g  132 (216)
                      +
T Consensus        89 ~   89 (338)
T 2rh8_A           89 T   89 (338)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.16  E-value=0.0043  Score=51.19  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   40 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARR   40 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4789999999999989999999999999999998765

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=96.16  E-value=0.013  Score=50.21  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++++|+|.|++|.+|+.++..|+++|++|+++.|.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   60 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   60 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            568999999999999999999999999999988764

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.16  E-value=0.008  Score=52.21  Aligned_cols=76  Identities=14%  Similarity=0.069  Sum_probs=59.4

Q ss_pred             CCccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCC--chhHHHHHHHHHhC-CCEEEEEeCC------------------
Q 027976           56 EPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL------------------  113 (216)
Q Consensus        56 ~~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~-ga~Vti~~~~------------------  113 (216)
                      .+...||=+.+ ++.+.++. ..++|.+++++|-+  +.|++.++..+... |++|+++...                  
T Consensus       125 g~~~HPtQ~LaDl~Ti~e~~-g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~  203 (299)
T 1pg5_A          125 GKHEHPTQAVIDIYTINKHF-NTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKE  203 (299)
T ss_dssp             TTTBCHHHHHHHHHHHHHHH-SCSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEE
T ss_pred             CCCcCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEE
Confidence            45678998888 44444444 47999999999997  56799999999999 9999998532                  


Q ss_pred             CCCHHhhccCCCEEEEecC
Q 027976          114 TKNPEQITSEADIVIAAAG  132 (216)
Q Consensus       114 t~~l~~~~~~ADIVIsatg  132 (216)
                      +.++.+++++||+|.+-.-
T Consensus       204 ~~d~~eav~~aDvvyt~~~  222 (299)
T 1pg5_A          204 VENPFEVINEVDVLYVTRI  222 (299)
T ss_dssp             ESCGGGTGGGCSEEEEECC
T ss_pred             eCCHHHHhcCCCEEEeCCc
Confidence            1367788999999997654

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=96.16  E-value=0.014  Score=50.90  Aligned_cols=96  Identities=8%  Similarity=0.118  Sum_probs=68.6

Q ss_pred             CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCC--chhHHHHHHHHHhC-CCEEEEEeCC-------------------
Q 027976           57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL-------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~-ga~Vti~~~~-------------------  113 (216)
                      +...||=+.+ ++.+.++.+ .++|.+|+++|-+  +.|++.++..+... |++|+++...                   
T Consensus       128 ~~~HPtQ~LaDl~Ti~e~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~  206 (306)
T 4ekn_B          128 SNQHPTQTLLDLYTIMREIG-RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKF  206 (306)
T ss_dssp             SSCCHHHHHHHHHHHHHHHS-CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCE
T ss_pred             CCcCcHHHHHHHHHHHHHhC-CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEE
Confidence            4568998888 445545554 7999999999997  45799999999999 9999998432                   


Q ss_pred             --CCCHHhhccCCCEEEEecCC----CC----------c-ccCCccc-CCcEEEEeee
Q 027976          114 --TKNPEQITSEADIVIAAAGV----AN----------L-VRGSWLK-PGAVVLDVGT  153 (216)
Q Consensus       114 --t~~l~~~~~~ADIVIsatg~----p~----------~-i~~~~i~-~g~vViDvg~  153 (216)
                        +.++.+.+++||+|++....    +.          + ++.+.++ ++++|+=+.-
T Consensus       207 ~~~~d~~eav~~aDvvy~~~~q~er~~~~~e~~~~~~~y~v~~~~l~~~~ai~mH~lP  264 (306)
T 4ekn_B          207 YEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLP  264 (306)
T ss_dssp             EEESCGGGCCTTCSEEEECCCCGGGCCSHHHHHHHHHHHCBCHHHHTTCCCEEECCSC
T ss_pred             EEEcCHHHHhcCCCEEEeCCcccccCCCHHHHHHhccCcEECHHHHcCCCCEEECCCC
Confidence              24677889999999976432    11          2 4555443 6677665553

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=96.15  E-value=0.0048  Score=56.64  Aligned_cols=71  Identities=13%  Similarity=0.245  Sum_probs=53.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------CCHHhhcc---CCCEEEEecCCCCc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------KNPEQITS---EADIVIAAAGVANL  136 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------~~l~~~~~---~ADIVIsatg~p~~  136 (216)
                      +|.|||.|.+ |.+++..|++.|.+|++++|+.                      .++.+.++   ++|+||.+++.+..
T Consensus         3 kIgVIG~G~m-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            3 DVGVVGLGVM-GANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             EEEEEChHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            6999999875 9999999999999999998752                      12334444   49999999987531


Q ss_pred             ----cc--CCcccCCcEEEEeee
Q 027976          137 ----VR--GSWLKPGAVVLDVGT  153 (216)
Q Consensus       137 ----i~--~~~i~~g~vViDvg~  153 (216)
                          +.  ...++++.+|||++.
T Consensus        82 v~~vl~~l~~~l~~g~iIId~sn  104 (478)
T 1pgj_A           82 TDSTIEQLKKVFEKGDILVDTGN  104 (478)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCC
T ss_pred             HHHHHHHHHhhCCCCCEEEECCC
Confidence                21  124578899999863

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.15  E-value=0.0055  Score=53.89  Aligned_cols=87  Identities=29%  Similarity=0.413  Sum_probs=60.1

Q ss_pred             HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC-------------------CCCHHhhcc----
Q 027976           67 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL-------------------TKNPEQITS----  122 (216)
Q Consensus        67 ~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~-------------------t~~l~~~~~----  122 (216)
                      ++..++..++ -.|++|+|+|+|+ +|..++.++...|+ +|+++.+.                   +.++.+.++    
T Consensus       171 a~~~l~~~~~-~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~  248 (370)
T 4ej6_A          171 CLHGVDLSGI-KAGSTVAILGGGV-IGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVG  248 (370)
T ss_dssp             HHHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTS
T ss_pred             HHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhh
Confidence            4455555544 4689999999965 69999999999999 77777443                   123334333    


Q ss_pred             ----CCCEEEEecCCCCccc--CCcccCCcEEEEeeeCC
Q 027976          123 ----EADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       123 ----~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~~  155 (216)
                          .+|+||.++|.+..+.  -+.++++-.++.+|...
T Consensus       249 ~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~  287 (370)
T 4ej6_A          249 LVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLP  287 (370)
T ss_dssp             SSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             ccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccC
Confidence                3799999999765332  34577777788888654

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.15  E-value=0.013  Score=51.08  Aligned_cols=56  Identities=23%  Similarity=0.298  Sum_probs=43.7

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC-------------------------CHHhhccCCCEEEEecC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-------------------------NPEQITSEADIVIAAAG  132 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-------------------------~l~~~~~~ADIVIsatg  132 (216)
                      +.++|.|||+|. +|.+++..|+..+. +|.++++...                         +-.+.+++||+||.++|
T Consensus         4 ~~~kI~iiGaG~-vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A            4 ARKKITLVGAGN-IGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAG   82 (321)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCC
Confidence            457899999976 59999999998886 8888855420                         11478899999999998


Q ss_pred             CCC
Q 027976          133 VAN  135 (216)
Q Consensus       133 ~p~  135 (216)
                      .|.
T Consensus        83 ~p~   85 (321)
T 3p7m_A           83 VPR   85 (321)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            763

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.15  E-value=0.011  Score=51.12  Aligned_cols=53  Identities=21%  Similarity=0.371  Sum_probs=41.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      .+|+|||+|. +|.+++..|+..|. +|.+++...                          .++ +.+++||+||.++|.
T Consensus         3 ~kI~VIGaG~-vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~   80 (309)
T 1ur5_A            3 KKISIIGAGF-VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA   80 (309)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECCCH-HHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC
Confidence            5899999965 69999999999985 877775431                          234 678999999999987


Q ss_pred             CC
Q 027976          134 AN  135 (216)
Q Consensus       134 p~  135 (216)
                      |.
T Consensus        81 p~   82 (309)
T 1ur5_A           81 PR   82 (309)
T ss_dssp             --
T ss_pred             CC
Confidence            63

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.14  E-value=0.0034  Score=52.76  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   60 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRS   60 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999888999999999999999998765

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.14  E-value=0.0085  Score=49.62  Aligned_cols=38  Identities=29%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (263)
T 3ai3_A            3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQ   40 (263)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            45789999999999889999999999999999988764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.14  E-value=0.0027  Score=53.03  Aligned_cols=38  Identities=26%  Similarity=0.289  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   43 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRR   43 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999998888999999999999999998765

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.13  E-value=0.007  Score=52.98  Aligned_cols=53  Identities=9%  Similarity=0.120  Sum_probs=43.2

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC---------------------------------------CCCHHhh
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------------------------------------TKNPEQI  120 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------------------------------------t~~l~~~  120 (216)
                      -++|.|||+|-+ |..+|..++..|.+|++....                                       +.++.+.
T Consensus         6 ~~~VaViGaG~M-G~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            6 AGDVLIVGSGLV-GRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             -CEEEEECCSHH-HHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCeEEEECCcHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            468999999865 999999999999999999543                                       1245678


Q ss_pred             ccCCCEEEEecCC
Q 027976          121 TSEADIVIAAAGV  133 (216)
Q Consensus       121 ~~~ADIVIsatg~  133 (216)
                      +++||+||-|+.-
T Consensus        85 ~~~ad~ViEav~E   97 (319)
T 3ado_A           85 VEGVVHIQECVPE   97 (319)
T ss_dssp             TTTEEEEEECCCS
T ss_pred             hccCcEEeecccc
Confidence            9999999998863

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.13  E-value=0.0083  Score=49.70  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEEcCCch--hHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNI--VGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~--vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++.  +|+.++..|+++|++|.++.|.
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~   42 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAG   42 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCc
Confidence            4688999999999865  7999999999999999888654

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.13  E-value=0.0079  Score=49.15  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   44 (254)
T 2wsb_A            7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDRE   44 (254)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999998775

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.12  E-value=0.017  Score=50.49  Aligned_cols=74  Identities=18%  Similarity=0.279  Sum_probs=58.9

Q ss_pred             CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------
Q 027976           57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------  113 (216)
                      +...||=+.+ ++.+.++. ..++|.+++++|-++.|++.++..+...|++|+++...                      
T Consensus       132 ~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~  210 (315)
T 1pvv_A          132 DFSHPCQALADYMTIWEKK-GTIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGS  210 (315)
T ss_dssp             SSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCE
T ss_pred             CCCCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCe
Confidence            3568888888 44454554 47999999999998889999999999999999998542                      


Q ss_pred             ---CCCHHhhccCCCEEEEec
Q 027976          114 ---TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 ---t~~l~~~~~~ADIVIsat  131 (216)
                         +.++.+.+++||+|.+-.
T Consensus       211 ~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          211 FELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             EEEESCHHHHTTTCSEEEECC
T ss_pred             EEEEeCHHHHhCCCCEEEEcc
Confidence               235678899999999743

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.12  E-value=0.0037  Score=52.15  Aligned_cols=37  Identities=14%  Similarity=0.120  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   44 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAART   44 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            4789999999999889999999999999999998775

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.11  E-value=0.015  Score=49.43  Aligned_cols=53  Identities=19%  Similarity=0.271  Sum_probs=41.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~  133 (216)
                      .+|+|.|++|.+|+.++..|+++|++|+++.|...                     .+.+.++..|+||...+.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            47999999999999999999999999998876531                     134567788999988774

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.11  E-value=0.0086  Score=54.91  Aligned_cols=73  Identities=22%  Similarity=0.382  Sum_probs=52.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEeCCC---------------C------------------CHHhhccCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT---------------K------------------NPEQITSEAD  125 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t---------------~------------------~l~~~~~~AD  125 (216)
                      .+|.|||.|.. |.++|..|++.  |.+|+.++++.               .                  ++.+.+++||
T Consensus        10 mkI~VIG~G~v-G~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD   88 (481)
T 2o3j_A           10 SKVVCVGAGYV-GGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD   88 (481)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence            48999999875 99999999998  68999997641               1                  2235567899


Q ss_pred             EEEEecCCCCc--------------cc------CCcccCCcEEEEeeeC
Q 027976          126 IVIAAAGVANL--------------VR------GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       126 IVIsatg~p~~--------------i~------~~~i~~g~vViDvg~~  154 (216)
                      +||.+++.|.-              +.      ...++++.+|+|.+..
T Consensus        89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv  137 (481)
T 2o3j_A           89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTV  137 (481)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence            99999886631              11      1235678899986543

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.10  E-value=0.0062  Score=50.21  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=35.5

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ..+++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus        10 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   49 (247)
T 1uzm_A           10 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS   49 (247)
T ss_dssp             CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3468899999999999899999999999999999987753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.10  E-value=0.0046  Score=53.72  Aligned_cols=84  Identities=14%  Similarity=0.247  Sum_probs=58.1

Q ss_pred             HHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHHhhc------
Q 027976           68 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQIT------  121 (216)
Q Consensus        68 ~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~~~~------  121 (216)
                      +..++..++  .|++|+|+|+|+ +|..++.++...|+ +|+.+.++.                   .++.+.+      
T Consensus       158 ~~~l~~~~~--~g~~VlV~GaG~-vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g  234 (348)
T 2d8a_A          158 VDTVLAGPI--SGKSVLITGAGP-LGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDG  234 (348)
T ss_dssp             HHHHTTSCC--TTCCEEEECCSH-HHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTT
T ss_pred             HHHHHhcCC--CCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCC
Confidence            444544444  899999999955 69999999999999 888875531                   2222222      


Q ss_pred             cCCCEEEEecCCCCccc--CCcccCCcEEEEeeeC
Q 027976          122 SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       122 ~~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~  154 (216)
                      +.+|+||+++|.+..+.  -+.++++..++.++..
T Consensus       235 ~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  269 (348)
T 2d8a_A          235 NGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLY  269 (348)
T ss_dssp             SCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccC
Confidence            25899999999754332  2456777778888764

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.10  E-value=0.0034  Score=52.31  Aligned_cols=35  Identities=26%  Similarity=0.244  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE-eCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV-HAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~-~~~  113 (216)
                      +||+++|.|+++-+|++++..|+++|++|.++ .|+
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~   38 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARS   38 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            68999999999889999999999999998886 443

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=96.07  E-value=0.0046  Score=51.13  Aligned_cols=53  Identities=19%  Similarity=0.224  Sum_probs=44.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------CHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l~~~~~~ADIVIsatg~  133 (216)
                      |+++|.|++|.+|+.++..|+++|++|+++.|...                  .+.+.+++.|+||+..+.
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            68999999888999999999999999988876531                  245677889999988874

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.07  E-value=0.0057  Score=49.05  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=50.4

Q ss_pred             eEEEEc-CCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhccCCCEEEEecCCCCc---
Q 027976           82 NAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVANL---  136 (216)
Q Consensus        82 ~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~p~~---  136 (216)
                      ++.|+| +|. +|++++..|++.|.+|++++|+.+                     ++.+.++++|+||.+++....   
T Consensus         2 ~i~iiGa~G~-~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~~~~~~~   80 (212)
T 1jay_A            2 RVALLGGTGN-LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDT   80 (212)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHH
T ss_pred             eEEEEcCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCChhhHHHH
Confidence            689999 655 599999999999999999987531                     123456779999999984321   


Q ss_pred             cc--CCcccCCcEEEEeee
Q 027976          137 VR--GSWLKPGAVVLDVGT  153 (216)
Q Consensus       137 i~--~~~i~~g~vViDvg~  153 (216)
                      +.  .+.+ ++.+++|+..
T Consensus        81 ~~~l~~~~-~~~~vi~~~~   98 (212)
T 1jay_A           81 ARDLKNIL-REKIVVSPLV   98 (212)
T ss_dssp             HHHTHHHH-TTSEEEECCC
T ss_pred             HHHHHHHc-CCCEEEEcCC
Confidence            11  0123 4889999874

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.07  E-value=0.0056  Score=56.26  Aligned_cols=124  Identities=15%  Similarity=0.090  Sum_probs=66.7

Q ss_pred             CCCeEEEEcCCchhHHH-HHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEecCCCCcccCCccc-CCcEEEEeeeCCc
Q 027976           79 MGKNAVVIGRSNIVGLP-TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGTCPV  156 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~-~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsatg~p~~i~~~~i~-~g~vViDvg~~~~  156 (216)
                      +.|++.|||.|++ |++ +|.+|.++|++|++++.......+.+++..+-+. .|.    .++.+. .+.+|+--++++.
T Consensus        21 ~~~~v~viGiG~s-G~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~-~g~----~~~~~~~~d~vV~Spgi~~~   94 (494)
T 4hv4_A           21 RVRHIHFVGIGGA-GMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIY-FHH----RPENVLDASVVVVSTAISAD   94 (494)
T ss_dssp             -CCEEEEETTTST-THHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEE-SSC----CGGGGTTCSEEEECTTSCTT
T ss_pred             cCCEEEEEEEcHh-hHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEE-CCC----CHHHcCCCCEEEECCCCCCC
Confidence            4689999999998 995 8999999999999998764322222332222221 110    111121 2334443343332


Q ss_pred             cCCCCCCCCCCCeEecccChHH-HhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 027976          157 DVSVDPSCEYGYRLMGDVCYEE-AMRLASVITPVPGGVGPMTVAMLLSNTLDSA  209 (216)
Q Consensus       157 ~~~~~~~~~~~~~l~GDvd~~~-~~~~~~~~tpvpgGvGp~T~amLl~n~~~a~  209 (216)
                      ..........+-++++++++-. ..+. ..+.-|-|--|.=|+..|+.+++++.
T Consensus        95 ~p~~~~a~~~gi~v~~~~e~l~~~~~~-~~~IaVTGTnGKTTTt~ml~~iL~~~  147 (494)
T 4hv4_A           95 NPEIVAAREARIPVIRRAEMLAELMRY-RHGIAVAGTHGKTTTTAMLSSIYAEA  147 (494)
T ss_dssp             CHHHHHHHHTTCCEEEHHHHHHHHHTT-SEEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHCCCCEEcHHHHHHHHhcC-CCEEEEecCCChHHHHHHHHHHHHhc
Confidence            1000000001235677766422 2111 11223457789999999999888764

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.06  E-value=0.0066  Score=50.03  Aligned_cols=71  Identities=21%  Similarity=0.248  Sum_probs=53.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEE-EEEeCCC------CCHHhhc-cCCCEEEEecCCCC-c-ccCCcccCCcEEEEe
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATV-SIVHALT------KNPEQIT-SEADIVIAAAGVAN-L-VRGSWLKPGAVVLDV  151 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~V-ti~~~~t------~~l~~~~-~~ADIVIsatg~p~-~-i~~~~i~~g~vViDv  151 (216)
                      ++.|||.|.+ |+.++..|.+.|.++ .+++++.      .++.+.+ .++|+||.+++... . +-...++.|..|++.
T Consensus         2 ~vgiIG~G~m-G~~~~~~l~~~g~~lv~v~d~~~~~~~~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~   80 (236)
T 2dc1_A            2 LVGLIGYGAI-GKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVL   80 (236)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEECCCHH-HHHHHHHHhcCCCEEEEEEecCcchhhhcCCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEE
Confidence            6899999775 999999998888986 6887763      2577777 68999999998432 1 223456778888886


Q ss_pred             ee
Q 027976          152 GT  153 (216)
Q Consensus       152 g~  153 (216)
                      ..
T Consensus        81 ~~   82 (236)
T 2dc1_A           81 ST   82 (236)
T ss_dssp             CG
T ss_pred             Cc
Confidence            53

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.06  E-value=0.014  Score=51.30  Aligned_cols=74  Identities=15%  Similarity=0.203  Sum_probs=59.1

Q ss_pred             CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------
Q 027976           57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------  113 (216)
                      +...||=+.+ ++.+.++.+ .++|++|+++|-++.|++.++.++...|++|+++...                      
T Consensus       134 ~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~  212 (323)
T 3gd5_A          134 DHEHPCQVVADLLTIRENFG-RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAE  212 (323)
T ss_dssp             SSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCe
Confidence            4567888887 445555554 7999999999999999999999999999999998532                      


Q ss_pred             ---CCCHHhhccCCCEEEEec
Q 027976          114 ---TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 ---t~~l~~~~~~ADIVIsat  131 (216)
                         +.++.+.+++||+|++-.
T Consensus       213 v~~~~d~~eav~~aDvvyt~~  233 (323)
T 3gd5_A          213 VQILRDPFEAARGAHILYTDV  233 (323)
T ss_dssp             EEEESCHHHHHTTCSEEEECC
T ss_pred             EEEECCHHHHhcCCCEEEEec
Confidence               135678899999998664

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.06  E-value=0.0092  Score=49.39  Aligned_cols=38  Identities=24%  Similarity=0.144  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   42 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   42 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999989999999999999999988765

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.06  E-value=0.032  Score=47.92  Aligned_cols=70  Identities=21%  Similarity=0.277  Sum_probs=49.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------------CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      .+|+|||+|.. |..++..|++.|.+|+++.|..                           .+..+..+.+|+||-++..
T Consensus         3 mkI~IiGaGai-G~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~   81 (320)
T 3i83_A            3 LNILVIGTGAI-GSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV   81 (320)
T ss_dssp             CEEEEESCCHH-HHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence            57999999875 9999999999999999987642                           1122333479999999986


Q ss_pred             CCc---c--cCCcccCCcEEEEe
Q 027976          134 ANL---V--RGSWLKPGAVVLDV  151 (216)
Q Consensus       134 p~~---i--~~~~i~~g~vViDv  151 (216)
                      ...   +  -...++++.+|+.+
T Consensus        82 ~~~~~~l~~l~~~l~~~t~Iv~~  104 (320)
T 3i83_A           82 VEGADRVGLLRDAVAPDTGIVLI  104 (320)
T ss_dssp             CTTCCHHHHHTTSCCTTCEEEEE
T ss_pred             CChHHHHHHHHhhcCCCCEEEEe
Confidence            442   1  12345667777765

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.06  E-value=0.012  Score=51.07  Aligned_cols=75  Identities=13%  Similarity=0.080  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------------CCHHhhc-----cCCCEEEEecCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQIT-----SEADIVIAAAGVAN  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~-----~~ADIVIsatg~p~  135 (216)
                      .|++|+|+|+++.+|..++.++...|++|+.+.++.                  +++.+.+     +..|+||+++|.+.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~  229 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDM  229 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchH
Confidence            699999997666679999999999999988886642                  1222222     24799999998754


Q ss_pred             ccc--CCcccCCcEEEEeee
Q 027976          136 LVR--GSWLKPGAVVLDVGT  153 (216)
Q Consensus       136 ~i~--~~~i~~g~vViDvg~  153 (216)
                      .+.  -+.++++-.++.++.
T Consensus       230 ~~~~~~~~l~~~G~iv~~~~  249 (346)
T 3fbg_A          230 YYDDMIQLVKPRGHIATIVA  249 (346)
T ss_dssp             HHHHHHHHEEEEEEEEESSC
T ss_pred             HHHHHHHHhccCCEEEEECC
Confidence            322  245677666666654

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.05  E-value=0.01  Score=50.65  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      +|+|+|.|++|.+|+.++..|+++|++|+++.|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r   34 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEec
Confidence            579999999898999999999999999988864

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.05  E-value=0.0092  Score=49.88  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=35.0

Q ss_pred             hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ...+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        15 ~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~   54 (267)
T 1vl8_A           15 EVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   54 (267)
T ss_dssp             --CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3456899999999999999999999999999999998765

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=96.05  E-value=0.0071  Score=53.72  Aligned_cols=39  Identities=13%  Similarity=0.025  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  115 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~  115 (216)
                      ...+++|+|.|++|.+|+.++..|++.|++|+++.|...
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            356789999999999999999999999999998877643

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=96.05  E-value=0.0085  Score=51.14  Aligned_cols=54  Identities=20%  Similarity=0.358  Sum_probs=43.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEeCCC--------------------------CCHHhhccCCCEEEEecC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT--------------------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg  132 (216)
                      ++|+|.|++|.+|+.++..|+++  |++|+++.|..                          ..+.+.++.+|+||...+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   84 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA   84 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCc
Confidence            68999999999999999999998  78999886632                          013466778899998887


Q ss_pred             CC
Q 027976          133 VA  134 (216)
Q Consensus       133 ~p  134 (216)
                      ..
T Consensus        85 ~~   86 (348)
T 1oc2_A           85 ES   86 (348)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.04  E-value=0.0091  Score=48.96  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~   46 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLD   46 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999988764

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.04  E-value=0.0032  Score=53.23  Aligned_cols=38  Identities=24%  Similarity=0.124  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   66 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRR   66 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            46899999999998888999999999999999998775

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.03  E-value=0.018  Score=50.17  Aligned_cols=106  Identities=11%  Similarity=0.055  Sum_probs=72.8

Q ss_pred             ccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCC
Q 027976           11 PCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS   89 (216)
Q Consensus        11 ~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~g   89 (216)
                      +|+|.+.-|  .+-....+-+..      ..+-.+|.|.      .+...||=+.+ ++.+.++. ..++|.+++++|-+
T Consensus        99 ~D~iviR~~--~~~~~~~la~~~------~~vPVINag~------G~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~  163 (310)
T 3csu_A           99 VDAIVMRHP--QEGAARLATEFS------GNVPVLNAGD------GSNQHPTQTLLDLFTIQETQ-GRLDNLHVAMVGDL  163 (310)
T ss_dssp             CSEEEEEES--STTHHHHHHHHC------TTCCEEEEEE------TTSCCHHHHHHHHHHHHHHH-SCSSSCEEEEESCT
T ss_pred             CCEEEEECC--ChhHHHHHHHhc------CCCCEEcCcc------CCCCCchHHHHHHHHHHHHh-CCcCCcEEEEECCC
Confidence            677777766  333333333222      1234556431      24567888888 44444444 47999999999997


Q ss_pred             --chhHHHHHHHHHhC-CCEEEEEeCC---------------------CCCHHhhccCCCEEEEec
Q 027976           90 --NIVGLPTSLLLQRH-HATVSIVHAL---------------------TKNPEQITSEADIVIAAA  131 (216)
Q Consensus        90 --g~vg~~~a~~L~~~-ga~Vti~~~~---------------------t~~l~~~~~~ADIVIsat  131 (216)
                        +.|++.++..+... |++|+++...                     +.++.+.+++||+|.+-.
T Consensus       164 ~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~  229 (310)
T 3csu_A          164 KYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR  229 (310)
T ss_dssp             TTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC
T ss_pred             CCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECC
Confidence              46799999999999 9999998432                     246778899999998764

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=96.03  E-value=0.011  Score=51.11  Aligned_cols=107  Identities=16%  Similarity=0.103  Sum_probs=74.0

Q ss_pred             cCccEEEEccCCCCCCCHHH-HHhcCCcccccCccCccccccccccCCCCccCCCcHHH-HHHHHHHhCCCCCCCeEEEE
Q 027976            9 LMPCQIIIRIHQLMHLDEGK-ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVI   86 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~-i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~Vi   86 (216)
                      .++|+|.+.-|-....  .. +-+..       .+-.+|.|      ..+...||=+.+ ++.+.++. -.++|.+++++
T Consensus        89 ~~~D~iviR~~~~~~~--~~~la~~~-------~vPVINAG------~g~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~v  152 (291)
T 3d6n_B           89 LGFDYVVFRVPFVFFP--YKEIVKSL-------NLRLVNAG------DGTHQHPSQGLIDFFTIKEHF-GEVKDLRVLYV  152 (291)
T ss_dssp             TTCSEEEEEESSCCCS--CHHHHHTC-------SSEEEEEE------ETTTBCHHHHHHHHHHHHHHH-SCCTTCEEEEE
T ss_pred             hcCCEEEEEcCChHHH--HHHHHHhC-------CCCEEeCc------cCCCcCcHHHHHHHHHHHHHh-CCcCCcEEEEE
Confidence            3457777776643333  33 22221       13345543      245568888888 44444444 47999999999


Q ss_pred             cC--CchhHHHHHHHHHhCCCEEEEEeCC--------------CCCHHhhccCCCEEEEecC
Q 027976           87 GR--SNIVGLPTSLLLQRHHATVSIVHAL--------------TKNPEQITSEADIVIAAAG  132 (216)
Q Consensus        87 G~--gg~vg~~~a~~L~~~ga~Vti~~~~--------------t~~l~~~~~~ADIVIsatg  132 (216)
                      |-  ++.|++.++..+...|++|+++...              +.++.+.+++||+|.+ +-
T Consensus       153 GDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~  213 (291)
T 3d6n_B          153 GDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LR  213 (291)
T ss_dssp             SCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CC
T ss_pred             CCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eC
Confidence            99  7778999999999999999998532              3467889999999998 64

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.03  E-value=0.0053  Score=49.75  Aligned_cols=53  Identities=13%  Similarity=0.147  Sum_probs=41.8

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------------CHHh-hccCCCEEEEecCCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------NPEQ-ITSEADIVIAAAGVAN  135 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------~l~~-~~~~ADIVIsatg~p~  135 (216)
                      +++|+|+|. +|+.++..|.++|.+|+++.++.+                      .+.+ .+++||+||.+++...
T Consensus         2 ~iiIiG~G~-~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   77 (218)
T 3l4b_C            2 KVIIIGGET-TAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE   77 (218)
T ss_dssp             CEEEECCHH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH
Confidence            689999976 599999999999999999976521                      1223 3788999999998753

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.03  E-value=0.0045  Score=50.71  Aligned_cols=37  Identities=27%  Similarity=0.223  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~   38 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATS   38 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999988765

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.02  E-value=0.019  Score=50.01  Aligned_cols=74  Identities=16%  Similarity=0.175  Sum_probs=58.2

Q ss_pred             CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976           57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL---------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~---------------------  113 (216)
                      +...||=+.+ ++.+.++. ..++|.+++++|-+ ..|++.++..|...|++|+++...                     
T Consensus       125 ~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~  203 (307)
T 2i6u_A          125 DEFHPCQVLADLQTIAERK-GALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGA  203 (307)
T ss_dssp             SSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTC
T ss_pred             CCcCccHHHHHHHHHHHHh-CCcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCC
Confidence            4568888888 44444444 47999999999997 678999999999999999998532                     


Q ss_pred             ----CCCHHhhccCCCEEEEec
Q 027976          114 ----TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 ----t~~l~~~~~~ADIVIsat  131 (216)
                          +.++.+.+++||+|.+-.
T Consensus       204 ~~~~~~d~~eav~~aDvvy~~~  225 (307)
T 2i6u_A          204 SVTVTADAHAAAAGADVLVTDT  225 (307)
T ss_dssp             CEEEESCHHHHHTTCSEEEECC
T ss_pred             eEEEEECHHHHhcCCCEEEecc
Confidence                235678899999999743

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.02  E-value=0.037  Score=50.54  Aligned_cols=82  Identities=22%  Similarity=0.276  Sum_probs=61.4

Q ss_pred             HHHHHhCCCCCCCeEEEEcCCc---------hhHHHHHHHHHhCCCEEEEEeCC---------------CCCHHhhccCC
Q 027976           69 ELLIRSGVEIMGKNAVVIGRSN---------IVGLPTSLLLQRHHATVSIVHAL---------------TKNPEQITSEA  124 (216)
Q Consensus        69 ~~L~~~~~~l~gk~v~ViG~gg---------~vg~~~a~~L~~~ga~Vti~~~~---------------t~~l~~~~~~A  124 (216)
                      +.+++...+++|++|.|+|..-         +-+..++..|.++|++|.+....               .+++.+.+++|
T Consensus       322 ~~l~~~~~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~a  401 (444)
T 3vtf_A          322 QLLEERLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQV  401 (444)
T ss_dssp             HHHHHHHTCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHC
T ss_pred             HHHHHHccccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCC
Confidence            3344444568999999999752         23678899999999999999653               13567889999


Q ss_pred             CEEEEecCCCCcccCCcccCCcEEEEee
Q 027976          125 DIVIAAAGVANLVRGSWLKPGAVVLDVG  152 (216)
Q Consensus       125 DIVIsatg~p~~i~~~~i~~g~vViDvg  152 (216)
                      |.||-+|..+.|-..+|  ++.+|+|.-
T Consensus       402 Davvi~t~h~ef~~ld~--~~~vv~D~R  427 (444)
T 3vtf_A          402 EGVIIATAWPQYEGLDY--RGKVVVDGR  427 (444)
T ss_dssp             SEEEECSCCGGGGGSCC--TTCEEEESS
T ss_pred             CEEEEccCCHHHhCCCc--CCCEEEECC
Confidence            99999999887644443  467899964

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.01  E-value=0.0061  Score=50.60  Aligned_cols=53  Identities=9%  Similarity=0.080  Sum_probs=42.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEeCCCC---------------------CHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~  133 (216)
                      |+++|.|++|.+|+.++..|+++  |++|+++.|...                     ++.+.++++|+||..++.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            57999999888999999999998  889998877531                     244667788999987763

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=96.01  E-value=0.011  Score=50.73  Aligned_cols=54  Identities=19%  Similarity=0.157  Sum_probs=43.8

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCC-----CEEEEEeCCCC--------------------CHHhhccC---CCEEEEec
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHH-----ATVSIVHALTK--------------------NPEQITSE---ADIVIAAA  131 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~g-----a~Vti~~~~t~--------------------~l~~~~~~---ADIVIsat  131 (216)
                      |++|+|.|++|.+|+.++..|+++|     ++|+.+.|...                    .+.+.+++   .|+||..+
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a   80 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVT   80 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECC
Confidence            5789999999999999999999999     89988876421                    23456666   89999887


Q ss_pred             CC
Q 027976          132 GV  133 (216)
Q Consensus       132 g~  133 (216)
                      +.
T Consensus        81 ~~   82 (364)
T 2v6g_A           81 WA   82 (364)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=96.00  E-value=0.012  Score=49.71  Aligned_cols=53  Identities=15%  Similarity=0.195  Sum_probs=42.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhcc--CCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITS--EADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~--~ADIVIsatg~  133 (216)
                      ++|+|.|++|.+|+.++..|+++|++|+++.|...                     .+.+.++  ..|+||...+.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~   77 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAAD   77 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            58999999999999999999999999988865321                     1334556  78999988874

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.99  E-value=0.0078  Score=50.14  Aligned_cols=38  Identities=26%  Similarity=0.237  Sum_probs=34.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   68 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSH   68 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999999899999999999999999987754

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=95.98  E-value=0.016  Score=51.22  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=69.1

Q ss_pred             CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------
Q 027976           57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------  113 (216)
                      +...||=+.+ ++.+.|+.+ .++|.+|+++|-++.|++.++..+...|++|+++...                      
T Consensus       156 ~~~HPtQaLaDl~TI~E~~G-~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~  234 (340)
T 4ep1_A          156 DDHHPCQALADLMTIYEETN-TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAE  234 (340)
T ss_dssp             SSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCC
T ss_pred             CCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCe
Confidence            3567888887 445555554 6999999999999999999999999999999998432                      


Q ss_pred             ---CCCHHhhccCCCEEEEecCC----C----------Cc-ccCCcc---cCCcEEEEee
Q 027976          114 ---TKNPEQITSEADIVIAAAGV----A----------NL-VRGSWL---KPGAVVLDVG  152 (216)
Q Consensus       114 ---t~~l~~~~~~ADIVIsatg~----p----------~~-i~~~~i---~~g~vViDvg  152 (216)
                         +.++.+.+++||+|++-.=.    +          .+ ++.+.+   +++++|+=+.
T Consensus       235 v~~~~d~~eav~~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          235 IEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             EEEESCHHHHHTTCSEEEECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EEEECCHHHHhCCCCEEEecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence               13567889999999865421    1          12 555544   4677777665

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=95.98  E-value=0.0067  Score=51.08  Aligned_cols=36  Identities=6%  Similarity=0.050  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++ |+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~   54 (272)
T 2nwq_A           19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRR   54 (272)
T ss_dssp             --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            356 899999999889999999999999999998775

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.98  E-value=0.012  Score=49.97  Aligned_cols=36  Identities=25%  Similarity=0.146  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      -.+++|+|.|++|.+|+.++..|+++|++|+++.|.
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   47 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR   47 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence            468999999999999999999999999999988764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=95.98  E-value=0.0042  Score=55.89  Aligned_cols=77  Identities=17%  Similarity=0.217  Sum_probs=53.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH-------------------------------------H--
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP-------------------------------------E--  118 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l-------------------------------------~--  118 (216)
                      -.|++|+|.|+++.+|..++.++...|++|+++.++.+.+                                     .  
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKL  298 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHH
Confidence            4799999999956679999999999999977775532100                                     0  


Q ss_pred             --hhc-cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          119 --QIT-SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       119 --~~~-~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                        +.. +..|+||+++|.+.+ -.-+.++++-.++.++..
T Consensus       299 v~~~~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~  338 (447)
T 4a0s_A          299 VVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSS  338 (447)
T ss_dssp             HHHHHSSCCSEEEECSCHHHHHHHHHHSCTTCEEEESCCT
T ss_pred             HHHHhCCCceEEEECCCchHHHHHHHHHhcCCEEEEEecC
Confidence              111 358999999997432 122456787778888754

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=95.97  E-value=0.01  Score=48.85  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   41 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            47899999999999999999999999999999987764

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=95.97  E-value=0.015  Score=51.22  Aligned_cols=75  Identities=15%  Similarity=0.114  Sum_probs=58.8

Q ss_pred             CccCCCcHHH-HHHHHHH-hCCCCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC--------------------
Q 027976           57 PLFIPCTPKG-CIELLIR-SGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL--------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~-~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~--------------------  113 (216)
                      +...||=+.+ ++.+.++ .+..++|.+++++|-+ ..|++.++..++..|++|+++...                    
T Consensus       130 ~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G  209 (333)
T 1duv_G          130 NEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNG  209 (333)
T ss_dssp             SSCCHHHHHHHHHHHHHHSTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCchHHHHHHHHHHHHhcCCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC
Confidence            5668998888 4455444 4447999999999997 678999999999999999998432                    


Q ss_pred             -----CCCHHhhccCCCEEEEec
Q 027976          114 -----TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 -----t~~l~~~~~~ADIVIsat  131 (216)
                           +.++.+.+++||+|.+-+
T Consensus       210 ~~v~~~~d~~eav~~aDvvytd~  232 (333)
T 1duv_G          210 GNITLTEDVAKGVEGADFIYTDV  232 (333)
T ss_dssp             CEEEEESCHHHHHTTCSEEEECC
T ss_pred             CeEEEEECHHHHhCCCCEEEeCC
Confidence                 245678899999999743

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=95.97  E-value=0.0052  Score=50.39  Aligned_cols=34  Identities=32%  Similarity=0.322  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  110 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  110 (216)
                      .++||+++|.|+++-+|+.++..|+++|++|.+.
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~   37 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIH   37 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence            3689999999998888999999999999998875

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=95.97  E-value=0.0099  Score=49.79  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   43 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRC   43 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            5889999999999889999999999999999998774

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=95.96  E-value=0.014  Score=50.76  Aligned_cols=107  Identities=15%  Similarity=0.078  Sum_probs=74.3

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHH-HHHHHHHhCCCCCCCeEEEEc
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIG   87 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG   87 (216)
                      .++|+|.+.-|  .+-..+.+.+..       .+-.+|.|      +.+...||=+.+ ++.+.|+.+ .++|.+|+++|
T Consensus        91 ~~~D~iviR~~--~~~~~~~la~~~-------~vPVINag------dg~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vG  154 (304)
T 3r7f_A           91 IGVDVCVIRHS--EDEYYEELVSQV-------NIPILNAG------DGCGQHPTQSLLDLMTIYEEFN-TFKGLTVSIHG  154 (304)
T ss_dssp             HTCCEEEEECS--STTCHHHHHHHC-------SSCEEESC------CTTSCCHHHHHHHHHHHHHHHS-CCTTCEEEEES
T ss_pred             hcCCEEEEecC--ChhHHHHHHHhC-------CCCEEeCC------CCCCcCcHHHHHHHHHHHHHhC-CCCCCEEEEEc
Confidence            35677777766  444444443321       13345542      134568888888 444444544 79999999999


Q ss_pred             CC--chhHHHHHHHHHhCCCEEEEEeCC-----------CCCHHhhccCCCEEEEec
Q 027976           88 RS--NIVGLPTSLLLQRHHATVSIVHAL-----------TKNPEQITSEADIVIAAA  131 (216)
Q Consensus        88 ~g--g~vg~~~a~~L~~~ga~Vti~~~~-----------t~~l~~~~~~ADIVIsat  131 (216)
                      -+  +.|++.++..+...|++|+++...           +.++.+.+++||+|++-.
T Consensus       155 D~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~~  211 (304)
T 3r7f_A          155 DIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLR  211 (304)
T ss_dssp             CCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSCEECCHHHHHHHCSEEEECC
T ss_pred             CCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcCccCCHHHHhCCCCEEEecc
Confidence            97  347999999999999999998542           236788999999999854

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.96  E-value=0.011  Score=50.72  Aligned_cols=53  Identities=23%  Similarity=0.276  Sum_probs=41.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCCC-------------------------CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT-------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t-------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      ++|.|||+|. +|.+++..|+..|  .+|++++++.                         .++ +.+++||+||.+++.
T Consensus         2 ~kI~VIGaG~-~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~   79 (309)
T 1hyh_A            2 RKIGIIGLGN-VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN   79 (309)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence            4799999876 4999999999988  6899986642                         122 456789999999997


Q ss_pred             CC
Q 027976          134 AN  135 (216)
Q Consensus       134 p~  135 (216)
                      |.
T Consensus        80 ~~   81 (309)
T 1hyh_A           80 IK   81 (309)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.96  E-value=0.016  Score=50.37  Aligned_cols=57  Identities=30%  Similarity=0.422  Sum_probs=45.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC--CC-------------------------CHHhhccCCCEEEE
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL--TK-------------------------NPEQITSEADIVIA  129 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~--t~-------------------------~l~~~~~~ADIVIs  129 (216)
                      .+.++|.|+|+|. +|.+++..|+..|. +|+++.+.  ..                         .-.+.+++||+||.
T Consensus         6 ~~~~kv~ViGaG~-vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIi   84 (315)
T 3tl2_A            6 IKRKKVSVIGAGF-TGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVI   84 (315)
T ss_dssp             CCCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEE
T ss_pred             cCCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEE
Confidence            3568999999966 59999999999998 89988765  10                         11467899999999


Q ss_pred             ecCCCC
Q 027976          130 AAGVAN  135 (216)
Q Consensus       130 atg~p~  135 (216)
                      ++|.|.
T Consensus        85 aag~p~   90 (315)
T 3tl2_A           85 TAGIAR   90 (315)
T ss_dssp             CCSCCC
T ss_pred             eCCCCC
Confidence            998653

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.96  E-value=0.0056  Score=56.38  Aligned_cols=69  Identities=20%  Similarity=0.233  Sum_probs=50.6

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------------------------CHHhhc
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------------------NPEQIT  121 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------------------------~l~~~~  121 (216)
                      -++|.|||+|.+ |.++|..|++.|.+|++++++.+                                      ++ +.+
T Consensus         5 ~~kVgVIGaG~M-G~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~   82 (483)
T 3mog_A            5 VQTVAVIGSGTM-GAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI-HAL   82 (483)
T ss_dssp             CCCEEEECCSHH-HHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG-GGG
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH-HHh
Confidence            368999999875 99999999999999999976531                                      11 357


Q ss_pred             cCCCEEEEecCCCCcccC-------CcccCCcEEEE
Q 027976          122 SEADIVIAAAGVANLVRG-------SWLKPGAVVLD  150 (216)
Q Consensus       122 ~~ADIVIsatg~p~~i~~-------~~i~~g~vViD  150 (216)
                      ++||+||.|++...-+..       +.+++++++++
T Consensus        83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~Ilas  118 (483)
T 3mog_A           83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTT  118 (483)
T ss_dssp             GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEe
Confidence            889999999975421221       23467777754

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=95.96  E-value=0.0057  Score=50.70  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   37 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG   37 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCC
Confidence            679999999999889999999999999999988765

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=95.95  E-value=0.0078  Score=50.05  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEe
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  111 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  111 (216)
                      ++.+|+++|.|+++-+|+.++..|+++|++|.+..
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~   57 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHY   57 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            47899999999999999999999999999987754

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.95  E-value=0.0046  Score=51.27  Aligned_cols=37  Identities=19%  Similarity=0.131  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++++|.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   40 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARS   40 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999999888999999999999999998775

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=95.95  E-value=0.011  Score=49.04  Aligned_cols=37  Identities=32%  Similarity=0.357  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRN   40 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998765

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=95.94  E-value=0.011  Score=53.73  Aligned_cols=38  Identities=13%  Similarity=0.107  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhC---CCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRH---HATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~---ga~Vti~~~~  113 (216)
                      ...++++|+|.|++|.+|+.++..|+++   |++|+++.|.
T Consensus        69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~  109 (478)
T 4dqv_A           69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRA  109 (478)
T ss_dssp             CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECS
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence            4578999999999999999999999998   8999988764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=95.93  E-value=0.011  Score=49.66  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.+.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   64 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT   64 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH
Confidence            56899999999999889999999999999999888754

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=95.93  E-value=0.0086  Score=50.21  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhC--CCEEEEEeCCCC-------------------CHHhhcc--CCCEEEEecCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK-------------------NPEQITS--EADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t~-------------------~l~~~~~--~ADIVIsatg~  133 (216)
                      +++|+|.|++|.+|+.++..|+++  |++|+++.|...                   ++.+.++  ..|+||...+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   78 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAAL   78 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            578999999999999999999998  889988876421                   2345566  78999988875

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=95.93  E-value=0.006  Score=52.56  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~   41 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIR   41 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999999889999999999999999988765

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.92  E-value=0.0091  Score=49.02  Aligned_cols=37  Identities=19%  Similarity=0.243  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (246)
T 2ag5_A            3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDIN   39 (246)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999999889999999999999999998765

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.92  E-value=0.011  Score=49.13  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS   46 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999988764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.92  E-value=0.011  Score=49.40  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            5789999999999889999999999999999988654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.91  E-value=0.0041  Score=51.58  Aligned_cols=37  Identities=22%  Similarity=0.117  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcCCc-hhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSN-IVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg-~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++||+++|.|+++ -+|+.++..|+++|++|.++.|+
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~   56 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYH   56 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCC
Confidence            47899999999942 25999999999999999988765

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=95.91  E-value=0.011  Score=49.02  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN   40 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999989999999999999999998765

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=95.91  E-value=0.0087  Score=48.79  Aligned_cols=37  Identities=24%  Similarity=0.281  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~   39 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999988765

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=95.91  E-value=0.0053  Score=50.90  Aligned_cols=37  Identities=32%  Similarity=0.306  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (260)
T 2qq5_A            2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRH   38 (260)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999989999999999999999988765

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=95.90  E-value=0.022  Score=50.21  Aligned_cols=75  Identities=15%  Similarity=0.155  Sum_probs=58.7

Q ss_pred             CccCCCcHHHHHHHHHHhCC-CCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976           57 PLFIPCTPKGCIELLIRSGV-EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL---------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g~~~~L~~~~~-~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~---------------------  113 (216)
                      +...||=+.+=+--++++.- +++|.+++++|-+ ..|+++++..++..|++|+++...                     
T Consensus       131 ~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~  210 (335)
T 1dxh_A          131 DEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGA  210 (335)
T ss_dssp             SSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTC
T ss_pred             CCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCC
Confidence            45689888884444444444 7999999999997 678999999999999999998432                     


Q ss_pred             ----CCCHHhhccCCCEEEEec
Q 027976          114 ----TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 ----t~~l~~~~~~ADIVIsat  131 (216)
                          +.++.+.+++||+|.+-+
T Consensus       211 ~v~~~~d~~eav~~aDvvytd~  232 (335)
T 1dxh_A          211 KLTLTEDPKEAVKGVDFVHTDV  232 (335)
T ss_dssp             EEEEESCHHHHTTTCSEEEECC
T ss_pred             eEEEEeCHHHHhCCCCEEEeCC
Confidence                245678899999999743

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=95.90  E-value=0.021  Score=49.78  Aligned_cols=75  Identities=16%  Similarity=0.060  Sum_probs=59.7

Q ss_pred             CccCCCcHHHHHHHHHHhCCCCC-CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------
Q 027976           57 PLFIPCTPKGCIELLIRSGVEIM-GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g~~~~L~~~~~~l~-gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------  113 (216)
                      +...||=+.+=+--++++...++ |++++++|-++.|++.++..+...|++|+++...                      
T Consensus       122 ~~~HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~  201 (307)
T 3tpf_A          122 ELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAK  201 (307)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCE
T ss_pred             CCcCcHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCe
Confidence            35678888884444455555799 9999999999999999999999999999988543                      


Q ss_pred             ---CCCHHhhccCCCEEEEec
Q 027976          114 ---TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 ---t~~l~~~~~~ADIVIsat  131 (216)
                         +.++.+.+++||+|.+-.
T Consensus       202 ~~~~~d~~eav~~aDvvyt~~  222 (307)
T 3tpf_A          202 ISLGYDKFEALKDKDVVITDT  222 (307)
T ss_dssp             EEEESCHHHHHTTCSEEEECC
T ss_pred             EEEEcCHHHHhcCCCEEEecC
Confidence               135678899999999766

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.89  E-value=0.011  Score=49.27  Aligned_cols=38  Identities=11%  Similarity=0.190  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~   64 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   64 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence            46899999999999999999999999999999988765

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=95.89  E-value=0.011  Score=49.27  Aligned_cols=38  Identities=21%  Similarity=0.210  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.+.
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            46899999999999888999999999999999888654

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=95.88  E-value=0.017  Score=50.20  Aligned_cols=94  Identities=20%  Similarity=0.091  Sum_probs=54.7

Q ss_pred             CCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCC----------------CCCHHhhc--
Q 027976           61 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHAL----------------TKNPEQIT--  121 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~----------------t~~l~~~~--  121 (216)
                      ||....+...|.+..---.|++|+|.|++|.+|..+++++...| ++|+...+.                ..++.+.+  
T Consensus       124 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~  203 (349)
T 4a27_A          124 PMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNADYVQEVKR  203 (349)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEECGGGHHHHGGGSSEEEETTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHcCCcEEEcCCccHHHHHHH
Confidence            33333444455443333479999999997778998888777675 576665432                11222222  


Q ss_pred             ---cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          122 ---SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       122 ---~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                         +.+|++|.++|.+.. -.-+.++++-.++-+|..
T Consensus       204 ~~~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~G~~  240 (349)
T 4a27_A          204 ISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSS  240 (349)
T ss_dssp             HCTTCEEEEEEECC-------CTTEEEEEEEEEEC--
T ss_pred             hcCCCceEEEECCCchhHHHHHHHhhcCCEEEEECCC
Confidence               247999999987654 223556777777777754

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.87  E-value=0.0061  Score=50.00  Aligned_cols=35  Identities=17%  Similarity=0.136  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~   36 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRR   36 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57999999999889999999999999999999775

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.87  E-value=0.019  Score=52.03  Aligned_cols=53  Identities=25%  Similarity=0.340  Sum_probs=44.5

Q ss_pred             cCCCcHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEE-EEeC
Q 027976           59 FIPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHA  112 (216)
Q Consensus        59 ~~p~Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~  112 (216)
                      ..++|++|++..+    ++.+.+++||+|+|.|.|+ ||..++..|.+.|++|. ++++
T Consensus       193 r~~aTg~Gv~~~~~~~~~~~g~~l~gk~vaVqG~Gn-VG~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          193 RDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQ-VGAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEEET
T ss_pred             CccchHHHHHHHHHHHHHhcCCCccCCEEEEECcCH-HHHHHHHHHHHCCCEEEEEEcC
Confidence            3568999977654    5578899999999999987 59999999999999965 8876

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=95.87  E-value=0.006  Score=52.16  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=41.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCCC---------------------------CCHHhhccC--CC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT---------------------------KNPEQITSE--AD  125 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t---------------------------~~l~~~~~~--AD  125 (216)
                      ..++++|+|.|++|.+|+.++..|+++|  .+|+...+..                           ..+.+.++.  .|
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d  100 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ  100 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence            4678999999999999999999999999  5666665431                           013345555  89


Q ss_pred             EEEEecCC
Q 027976          126 IVIAAAGV  133 (216)
Q Consensus       126 IVIsatg~  133 (216)
                      +||...+.
T Consensus       101 ~Vih~A~~  108 (346)
T 4egb_A          101 VIVNFAAE  108 (346)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99988774

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.87  E-value=0.0069  Score=52.94  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=52.4

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHHhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      +|.|||+|.+ |.+++..|++.|.+|++++++.                            .++.+.++++|+||.+++.
T Consensus        17 kI~iIG~G~m-G~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~   95 (366)
T 1evy_A           17 KAVVFGSGAF-GTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT   95 (366)
T ss_dssp             EEEEECCSHH-HHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH
T ss_pred             eEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh
Confidence            7999999875 9999999999999999997652                            1344567789999999974


Q ss_pred             CC---cccC------CcccC-CcEEEEee
Q 027976          134 AN---LVRG------SWLKP-GAVVLDVG  152 (216)
Q Consensus       134 p~---~i~~------~~i~~-g~vViDvg  152 (216)
                      ..   .+..      ..+++ +.+|+|+.
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~  124 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCT  124 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEEC
Confidence            32   1211      23566 88899885

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.86  E-value=0.017  Score=50.71  Aligned_cols=56  Identities=20%  Similarity=0.409  Sum_probs=43.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHHhhccCCCEEEEe
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~ADIVIsa  130 (216)
                      ...++|.|||+|. +|.+++..|+.+|.  ++.+++...                         .+. +.+++||+||.+
T Consensus        17 ~~~~kV~ViGaG~-vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGVGA-VGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEEC
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEc
Confidence            4678999999976 59999999998885  688885431                         122 468999999999


Q ss_pred             cCCCC
Q 027976          131 AGVAN  135 (216)
Q Consensus       131 tg~p~  135 (216)
                      .|.|.
T Consensus        95 aG~~~   99 (331)
T 4aj2_A           95 AGARQ   99 (331)
T ss_dssp             CSCCC
T ss_pred             cCCCC
Confidence            98653

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=95.86  E-value=0.016  Score=50.43  Aligned_cols=96  Identities=11%  Similarity=-0.006  Sum_probs=69.5

Q ss_pred             CccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCC--chhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976           57 PLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL---------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~---------------------  113 (216)
                      +...||=+.+=+--++++...++|.+++++|-+  +.|++.++..+...|++|+++...                     
T Consensus       132 ~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~  211 (308)
T 1ml4_A          132 SNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVE  211 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEE
T ss_pred             CccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEE
Confidence            456898888844444555557999999999997  457999999999999999998532                     


Q ss_pred             CCCHHhhccCCCEEEEecCCC--------------Cc-ccCCcc---cCCcEEEEee
Q 027976          114 TKNPEQITSEADIVIAAAGVA--------------NL-VRGSWL---KPGAVVLDVG  152 (216)
Q Consensus       114 t~~l~~~~~~ADIVIsatg~p--------------~~-i~~~~i---~~g~vViDvg  152 (216)
                      +.++.+.+++||+|.+-.-..              .+ ++.+.+   +++++|+=+.
T Consensus       212 ~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          212 TTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             ESCTHHHHTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             EcCHHHHhcCCCEEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            135678999999999755311              13 555555   4677776655

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.86  E-value=0.0053  Score=51.52  Aligned_cols=37  Identities=27%  Similarity=0.413  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRS   39 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999989999999999999999998765

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.85  E-value=0.014  Score=50.64  Aligned_cols=71  Identities=17%  Similarity=0.227  Sum_probs=52.5

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------------CCHHhhccCCCEEEEecCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      ..+|.|||+|.. |.+++..|++.|.+|+++.|..                          .+.. .+..+|+||.+++.
T Consensus         3 ~mkI~IiGaG~~-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGAV-GGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAA-ALGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCHH-HHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHH-HHCCCSEEEECCCH
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHH-HcCCCCEEEEeCCc
Confidence            368999999865 9999999999999999997631                          1333 35789999999986


Q ss_pred             CCc---c--cCCcccCCcEEEEee
Q 027976          134 ANL---V--RGSWLKPGAVVLDVG  152 (216)
Q Consensus       134 p~~---i--~~~~i~~g~vViDvg  152 (216)
                      +..   +  -...++++.+|+.+.
T Consensus        81 ~~~~~~~~~l~~~l~~~~~iv~~~  104 (335)
T 3ghy_A           81 PALESVAAGIAPLIGPGTCVVVAM  104 (335)
T ss_dssp             HHHHHHHGGGSSSCCTTCEEEECC
T ss_pred             hhHHHHHHHHHhhCCCCCEEEEEC
Confidence            431   1  123467788888764

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=95.84  E-value=0.0043  Score=52.51  Aligned_cols=37  Identities=32%  Similarity=0.431  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~   41 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARN   41 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999998888999999999999999988765

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=95.83  E-value=0.012  Score=49.15  Aligned_cols=38  Identities=24%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   42 (270)
T 1yde_A            5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   42 (270)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999998775

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.83  E-value=0.018  Score=49.63  Aligned_cols=52  Identities=29%  Similarity=0.447  Sum_probs=40.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHhC--CCEEEEEeCCC--------------------------CCHHhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      +|.|||+|. +|.+++..|+..  +.+|+++.+..                          .++ +.+++||+||.++|.
T Consensus         2 kI~VIGaG~-vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~~l~~aDvViiav~~   79 (310)
T 1guz_A            2 KITVIGAGN-VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY-ADTANSDIVIITAGL   79 (310)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG-GGGTTCSEEEECCSC
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCH-HHHCCCCEEEEeCCC
Confidence            699999965 599999999885  67899986642                          123 337889999999987


Q ss_pred             CC
Q 027976          134 AN  135 (216)
Q Consensus       134 p~  135 (216)
                      |.
T Consensus        80 p~   81 (310)
T 1guz_A           80 PR   81 (310)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.83  E-value=0.011  Score=49.40  Aligned_cols=37  Identities=19%  Similarity=0.112  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~   65 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCART   65 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            3789999999999999999999999999999988765

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=95.83  E-value=0.012  Score=49.42  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~   59 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRK   59 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999998765

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.82  E-value=0.0089  Score=49.82  Aligned_cols=52  Identities=12%  Similarity=0.066  Sum_probs=43.4

Q ss_pred             eEEEEcCCchhHHHHHHHHHhC-CCEEEEEeCCC---------------------CCHHhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT---------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      +|+|.|++|.+|+.++..|++. |++|+++.|+.                     ..+.+.++.+|+||...+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            6999999999999999999988 89999887752                     1245778899999988875

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.82  E-value=0.0096  Score=52.08  Aligned_cols=74  Identities=18%  Similarity=0.209  Sum_probs=53.9

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---CCHH----------------hhc----cCCCEEEEecCCCCc
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---KNPE----------------QIT----SEADIVIAAAGVANL  136 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---~~l~----------------~~~----~~ADIVIsatg~p~~  136 (216)
                      |++|+|+|+| .+|..++.++...|++|+++.++.   +.++                +.+    ...|+||+++|.+..
T Consensus       181 g~~VlV~GaG-~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  259 (366)
T 2cdc_A          181 CRKVLVVGTG-PIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVN  259 (366)
T ss_dssp             TCEEEEESCH-HHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTH
T ss_pred             CCEEEEECCC-HHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHH
Confidence            9999999995 569999999999999988887764   2211                011    247999999997654


Q ss_pred             c-c--CCcccCCcEEEEeeeC
Q 027976          137 V-R--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       137 i-~--~~~i~~g~vViDvg~~  154 (216)
                      + .  .+.++++..++.++..
T Consensus       260 ~~~~~~~~l~~~G~iv~~g~~  280 (366)
T 2cdc_A          260 ILGNVIPLLGRNGVLGLFGFS  280 (366)
T ss_dssp             HHHHHGGGEEEEEEEEECSCC
T ss_pred             HHHHHHHHHhcCCEEEEEecC
Confidence            3 2  3556777777777754

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=95.82  E-value=0.0092  Score=49.57  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=32.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  110 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  110 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++
T Consensus         4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~   38 (259)
T 3edm_A            4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLT   38 (259)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            35789999999999889999999999999999887

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=95.81  E-value=0.012  Score=45.42  Aligned_cols=54  Identities=13%  Similarity=0.095  Sum_probs=43.4

Q ss_pred             CCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeCCC-----------CCHHhhccCCCEEEEecCC
Q 027976           80 GKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~t-----------~~l~~~~~~ADIVIsatg~  133 (216)
                      -++|.|||+|   +.+|..++..|.+.|++|+.++...           +++.+.....|++|.+++.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp~   80 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNS   80 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSCS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeCH
Confidence            4679999996   4469999999999999988888764           2455666778999999984

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=95.81  E-value=0.025  Score=49.68  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=57.8

Q ss_pred             CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC---------------------
Q 027976           57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL---------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~---------------------  113 (216)
                      +..-||=+.+ ++.+.++.+ .++|.+++++|-+ ..|++.++..|...|++|+++...                     
T Consensus       144 ~~~HPtQaLaDl~Ti~e~~g-~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~  222 (325)
T 1vlv_A          144 DEFHPTQALADLMTIEENFG-RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDG  222 (325)
T ss_dssp             SSCCHHHHHHHHHHHHHHHS-CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCC
T ss_pred             CCCCcHHHHHHHHHHHHHhC-CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCC
Confidence            4568998888 444445544 7999999999997 678999999999999999998432                     


Q ss_pred             ----CCCHHhhccCCCEEEEe
Q 027976          114 ----TKNPEQITSEADIVIAA  130 (216)
Q Consensus       114 ----t~~l~~~~~~ADIVIsa  130 (216)
                          +.++.+.+++||+|.+-
T Consensus       223 ~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          223 SVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             EEEEESCHHHHHTTCSEEEEC
T ss_pred             eEEEEcCHHHHHccCCEEEec
Confidence                23567889999999874

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=95.80  E-value=0.0043  Score=52.04  Aligned_cols=37  Identities=19%  Similarity=0.147  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~   45 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRD   45 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3679999999998888999999999999999998764

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.80  E-value=0.0097  Score=49.83  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=32.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++.+|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        12 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   49 (266)
T 3p19_A           12 RGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARR   49 (266)
T ss_dssp             ---CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35789999999999889999999999999999998775

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=95.80  E-value=0.0096  Score=49.17  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   39 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999988765

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=95.79  E-value=0.013  Score=49.37  Aligned_cols=37  Identities=22%  Similarity=0.200  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~   51 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRK   51 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999988764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.77  E-value=0.0095  Score=52.22  Aligned_cols=75  Identities=11%  Similarity=0.103  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHh-CCCEEEEEeCCC------------------CCHHhhc-----cCCCEEEEecCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQR-HHATVSIVHALT------------------KNPEQIT-----SEADIVIAAAGVA  134 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga~Vti~~~~t------------------~~l~~~~-----~~ADIVIsatg~p  134 (216)
                      .|++|+|+|++|.+|..++.++.. .|++|+.+.++.                  +++.+.+     +..|+||.++|.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~  250 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTD  250 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCch
Confidence            689999999666679988887766 588988886542                  1232322     2479999999876


Q ss_pred             Ccc--cCCcccCCcEEEEeee
Q 027976          135 NLV--RGSWLKPGAVVLDVGT  153 (216)
Q Consensus       135 ~~i--~~~~i~~g~vViDvg~  153 (216)
                      ..+  ..+.++++-.++.++.
T Consensus       251 ~~~~~~~~~l~~~G~iv~~g~  271 (363)
T 4dvj_A          251 KHAAEIADLIAPQGRFCLIDD  271 (363)
T ss_dssp             HHHHHHHHHSCTTCEEEECSC
T ss_pred             hhHHHHHHHhcCCCEEEEECC
Confidence            432  2356777766666653

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=95.76  E-value=0.013  Score=48.54  Aligned_cols=36  Identities=28%  Similarity=0.260  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN   40 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECC
Confidence            679999999999999999999999999999988764

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.76  E-value=0.013  Score=49.07  Aligned_cols=37  Identities=16%  Similarity=0.201  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.+
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r   47 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDI   47 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEec
Confidence            4689999999999988999999999999999999876

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=95.76  E-value=0.01  Score=51.45  Aligned_cols=36  Identities=19%  Similarity=0.037  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~   38 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRD   38 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCc
Confidence            578999999998888999999999999999877553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1a4ia1	170	c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehy	6e-50
d1b0aa1	166	c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehy	7e-47
d1edza1	171	c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehy	3e-35
d1edza2	146	c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/	5e-16
d1b0aa2	121	c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/	0.002
d1a4ia2	125	c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/	0.004

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (400), Expect = 6e-50
 Identities = 82/170 (48%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 42  FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 101
              +N G LA       FIPCTPKGC+EL+  +GV I G++AVV+GRS IVG P   LL 
Sbjct: 1   LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLL 60

Query: 102 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 161
            ++ATV+  H+ T + ++  ++ DI++ A G   +V+G W+KPGA+V+D G   V    D
Sbjct: 61  WNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVP---D 117

Query: 162 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 211
                G +++GDV Y+EA   AS ITPVPGGVGPMTVAML+ +T++SAKR
Sbjct: 118 DKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 167

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

 Score =  150 bits (379), Expect = 7e-47
 Identities = 75/172 (43%), Positives = 100/172 (58%), Gaps = 11/172 (6%)

Query: 42  FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 101
           FHP N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L 
Sbjct: 1   FHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 58

Query: 102 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 161
               T ++ H  TKN       AD++I A G    + G W+K GA+V+DVG   ++    
Sbjct: 59  LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLE---- 114

Query: 162 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 213
                  +++GDV +E+A + AS ITPVPGGVGPMTVA L+ NTL +    +
Sbjct: 115 -----NGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYH 161

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  120 bits (302), Expect = 3e-35
 Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 56/186 (30%)

Query: 61  PCTPKGCIELL---------IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH 111
           PCTP   +++L         +  G  + GK  +VI RS IVG P + LL    ATV  V 
Sbjct: 1   PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVD 60

Query: 112 ALTKN-------------------------PEQITSEADIVIAAAGVAN-LVRGSWLKPG 145
                                          ++ + ++D+VI      N      ++K G
Sbjct: 61  VNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEG 120

Query: 146 AVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNT 205
           AV ++                          ++    AS+  P+ G V   T+AMLL N 
Sbjct: 121 AVCINFACT------------------KNFSDDVKEKASLYVPMTGKV---TIAMLLRNM 159

Query: 206 LDSAKR 211
           L   + 
Sbjct: 160 LRLVRN 165

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.0 bits (171), Expect = 5e-16
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 12  CQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCI 68
             I++      +  +  +   V  EKDV+G + +   NL                 I
Sbjct: 91  NGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYH--NVRYLDKENRLKSI 145

>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 23  HLDEGKILDAVSLEKDVDG 41
            +D  K+L+ +  +KDVDG
Sbjct: 103 GIDNVKVLERIHPDKDVDG 121

>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.004
 Identities = 7/19 (36%), Positives = 15/19 (78%)

Query: 23  HLDEGKILDAVSLEKDVDG 41
            ++  ++++A++ EKDVDG
Sbjct: 107 SINTEEVINAIAPEKDVDG 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	99.88
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	99.86
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.85
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.84
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	99.82
d1edza2	146	Tetrahydrofolate dehydrogenase/cyclohydrolase {Bak	99.66
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	99.45
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.25
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.22
d1b0aa2	121	Tetrahydrofolate dehydrogenase/cyclohydrolase {Esc	98.88
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.88
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.75
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.52
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.43
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.29
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.25
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.2
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.16
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.15
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.11
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.11
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.1
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.02
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.0
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.97
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.91
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.87
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.79
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.72
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.7
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.68
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.62
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.58
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.52
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.5
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.5
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.47
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.47
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.46
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.45
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.44
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.42
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.4
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.38
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.38
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.37
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.32
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.3
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.3
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.3
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.29
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.28
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.25
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.25
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.24
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.23
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.23
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.21
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.21
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.2
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.2
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.19
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.19
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.19
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.17
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.16
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.15
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.14
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.13
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.12
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.11
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.11
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	97.1
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.08
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.08
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.07
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.06
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.06
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.06
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.05
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.05
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.05
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.04
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.03
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.02
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.02
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.0
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.98
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.98
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.98
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.97
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.97
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.96
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.94
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.92
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.92
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.91
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.91
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.9
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.89
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	96.89
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.87
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.86
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.86
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.86
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.85
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.84
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.84
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.83
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.83
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.83
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.8
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.8
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.78
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.78
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.77
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.76
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.74
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.73
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.72
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.71
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.71
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.71
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.7
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.69
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.68
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.67
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.67
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.66
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.66
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.63
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.6
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	96.6
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.6
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.59
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.59
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.58
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	96.57
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.56
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.55
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	96.53
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.5
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.48
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.48
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.45
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.45
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	96.44
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.42
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	96.41
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.38
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.38
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.34
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.34
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.31
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.31
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	96.3
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.3
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.28
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.27
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.27
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.26
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.26
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	96.23
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.2
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.19
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.12
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	96.08
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.06
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.06
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.02
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.01
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	96.0
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.98
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.96
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.95
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.94
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.89
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.85
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.85
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	95.85
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.83
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.78
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.74
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	95.74
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	95.68
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.66
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.64
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.61
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.59
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	95.57
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	95.57
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.56
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.46
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.46
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.43
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.42
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.41
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.4
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.38
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	95.35
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.29
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.29
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.29
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.26
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.21
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.18
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.17
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.17
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.16
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.16
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.15
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.14
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.12
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.09
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.05
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	95.02
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.98
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	94.94
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	94.94
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	94.93
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.9
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.86
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.85
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.83
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.83
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.77
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	94.73
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.59
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.56
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	94.52
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	94.51
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	94.48
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.48
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.47
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.42
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.41
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.35
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.34
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.34
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.32
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	94.24
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	94.19
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	94.19
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	94.15
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.14
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	94.09
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.08
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.08
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.05
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.92
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	93.9
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.8
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	93.78
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	93.67
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.58
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.49
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	93.4
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.38
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.37
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	93.36
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.32
d1a4ia2	125	Tetrahydrofolate dehydrogenase/cyclohydrolase {Hum	93.28
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.2
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.14
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.09
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	93.03
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	92.96
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	92.96
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.94
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	92.9
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.88
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	92.84
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.71
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	92.67
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	92.63
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	92.61
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	92.58
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.56
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	92.46
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	92.44
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.39
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	92.3
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.27
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	92.23
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	92.03
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.94
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.9
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	91.63
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.52
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.44
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.28
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	91.18
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	91.13
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	91.08
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.95
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	90.87
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.76
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.61
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	90.48
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	90.37
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.28
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	90.19
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.16
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	89.9
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	89.86
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	89.79
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.66
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	89.6
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	89.3
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	88.91
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	88.88
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.85
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	88.83
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	88.66
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	88.54
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	88.47
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	88.47
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	88.26
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.1
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.01
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	87.95
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	87.58
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.45
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	87.34
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.33
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	87.13
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	87.1
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.89
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	86.71
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	86.65
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	86.59
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	85.82
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	85.79
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	85.67
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	85.31
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	85.01
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	84.99
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	84.95
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	84.59
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	84.58
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	83.61
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	83.53
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	83.34
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	83.08
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	82.86
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	82.14
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	81.4
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	81.35
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	81.08
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	81.04
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	80.64
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	80.37
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.33
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	80.26

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.9e-54  Score=344.58  Aligned_cols=163  Identities=46%  Similarity=0.777  Sum_probs=156.8

Q ss_pred             cCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhc
Q 027976           42 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT  121 (216)
Q Consensus        42 ~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~  121 (216)
                      |||+|.|+|..+  .++|+||||.|++++|++|+++++||+|+|||+|..||+|++.+|.++||+||+||++++++++.+
T Consensus         1 fhp~N~G~l~~~--~~~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~   78 (166)
T d1b0aa1           1 FHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHV   78 (166)
T ss_dssp             CSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHH
T ss_pred             CCchhHHHHhCC--CCCCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHH
Confidence            699999999976  689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHH
Q 027976          122 SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML  201 (216)
Q Consensus       122 ~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amL  201 (216)
                      ++|||||+|+|+|++++++|+|+|++|||+|+++.+         +++++||+||++++++++++|||||||||||++||
T Consensus        79 ~~ADivI~a~G~p~~i~~~~vk~g~vvIDvGi~~~~---------~~~~~Gdvd~~~v~~~a~~~TPvPGGVGP~Tva~L  149 (166)
T d1b0aa1          79 ENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLE---------NGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATL  149 (166)
T ss_dssp             HHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEECT---------TSCEECSBCHHHHHHHCSEECCSSSSSHHHHHHHH
T ss_pred             hhhhHhhhhccCcccccccccCCCcEEEecCceecC---------CCCEEeccccHhHHhheeEeCCCCCcccHHHHHHH
Confidence            999999999999999999999999999999999876         25899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 027976          202 LSNTLDSAKRAYGF  215 (216)
Q Consensus       202 l~n~~~a~~~~~~~  215 (216)
                      |+|+++++++|+..
T Consensus       150 ~~N~v~a~~~~~~~  163 (166)
T d1b0aa1         150 IENTLQACVEYHDP  163 (166)
T ss_dssp             HHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHhCc
Confidence            99999999999863

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-53  Score=344.42  Aligned_cols=170  Identities=48%  Similarity=0.815  Sum_probs=155.4

Q ss_pred             cCccccccccccCCCCccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhc
Q 027976           42 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT  121 (216)
Q Consensus        42 ~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~  121 (216)
                      +|++|.|+|..|+.+++|+||||.|++++|++|+++++||+|+|||+|..||||++.+|+++||+|++||+.++++.+.+
T Consensus         1 l~~~N~G~l~~g~~~~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~~   80 (170)
T d1a4ia1           1 LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV   80 (170)
T ss_dssp             CSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH
T ss_pred             CCccchhhHhcCCCCCCCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHHH
Confidence            58999999998865789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEecCCCCcccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHHH
Q 027976          122 SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML  201 (216)
Q Consensus       122 ~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~amL  201 (216)
                      ++|||+|+|+|+|++++++|+++|++|||+|+++.+   |+..+++++++||+||+++.++++++|||||||||||++||
T Consensus        81 ~~aDivi~a~G~~~~i~~~~vk~g~iviDvgi~~~~---~~~~~~~~~~~gdvd~~~v~~~a~~~TPvPGGVGp~Tva~L  157 (170)
T d1a4ia1          81 NKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVP---DDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAML  157 (170)
T ss_dssp             TTCSEEEECCCCTTCBCGGGSCTTCEEEECCCBC-------------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHH
T ss_pred             hhccchhhccccccccccccccCCCeEeccCccccc---ccccCCCCEEecccchHhhhhhceEeCCCCCchhHHHHHHH
Confidence            999999999999999999999999999999999876   33233456899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 027976          202 LSNTLDSAKRAYG  214 (216)
Q Consensus       202 l~n~~~a~~~~~~  214 (216)
                      |+|+++++|||+.
T Consensus       158 ~~N~v~a~~r~l~  170 (170)
T d1a4ia1         158 MQSTVESAKRFLE  170 (170)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999999974

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-38  Score=256.83  Aligned_cols=132  Identities=31%  Similarity=0.450  Sum_probs=120.6

Q ss_pred             CCcHHHHHHHHHHhCC---------CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------
Q 027976           61 PCTPKGCIELLIRSGV---------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------  115 (216)
Q Consensus        61 p~Ta~g~~~~L~~~~~---------~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------  115 (216)
                      ||||.|++++|++|++         +++||+|+|||+|..||+|+|.+|+++||+|++||+.+.                
T Consensus         1 PcTp~gv~~LL~~y~I~~~~~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1edza1           1 PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHV   80 (171)
T ss_dssp             CHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEE
T ss_pred             CCcHHHHHHHHHHcCcccccccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeecc
Confidence            9999999999999988         899999999999999999999999999999999987631                


Q ss_pred             ---------CHHhhccCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcce
Q 027976          116 ---------NPEQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV  185 (216)
Q Consensus       116 ---------~l~~~~~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~  185 (216)
                               .+++.+++|||||+|+|.|++ ++.+|+++|++|||+|++++.                  ++++++++++
T Consensus        81 ~~~~~~~~~~lk~~~~~aDIvIsavG~p~~~i~~d~ik~GavvIDvGi~~~~------------------~~~v~~~a~~  142 (171)
T d1edza1          81 EDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNF------------------SDDVKEKASL  142 (171)
T ss_dssp             EEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTTSCTTEEEEECSSSCCB------------------CGGGGTTEEE
T ss_pred             ccccccchhHHhhccccCCEEEEccCCCccccChhhcccCceEeeccccccc------------------ccchhheeeE
Confidence                     267778899999999999998 999999999999999987643                  1467789999


Q ss_pred             ecccCCcccHHHHHHHHHHHHHHHHHHh
Q 027976          186 ITPVPGGVGPMTVAMLLSNTLDSAKRAY  213 (216)
Q Consensus       186 ~tpvpgGvGp~T~amLl~n~~~a~~~~~  213 (216)
                      +|||||||   |++|||+|+++++|+|.
T Consensus       143 iTPVPGGV---TvamLl~N~v~a~~~~~  167 (171)
T d1edza1         143 YVPMTGKV---TIAMLLRNMLRLVRNVE  167 (171)
T ss_dssp             EESCCHHH---HHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCHH---HHHHHHHHHHHHHHHHH
Confidence            99999997   99999999999999875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.8e-22  Score=160.86  Aligned_cols=130  Identities=18%  Similarity=0.152  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------CH-HhhccCC
Q 027976           64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NP-EQITSEA  124 (216)
Q Consensus        64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l-~~~~~~A  124 (216)
                      ..|+++.|++.+++++||+|+|+|+||+ +|+++..|.+.|++|+|++|+.+                  .+ .....++
T Consensus         2 g~Gf~~~l~~~~~~~~~k~vlIlGaGGa-arai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T d1nyta1           2 GVGLLSDLERLSFIRPGLRILLIGAGGA-SRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEF   80 (170)
T ss_dssp             HHHHHHHHHHHTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCC
T ss_pred             HhHHHHHHHHcCCCCCCCEEEEECCcHH-HHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccccccccccccc
Confidence            4899999999999999999999999998 99999999999999999999731                  11 1134568


Q ss_pred             CEEEEecCCCC-----cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHH
Q 027976          125 DIVIAAAGVAN-----LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVA  199 (216)
Q Consensus       125 DIVIsatg~p~-----~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~a  199 (216)
                      |+|||+|+..+     .++.+.++++.+|+|+.|+|.+          |+|+     +.+ +..|+.+ +.+|++     
T Consensus        81 dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~~~-~i~Gl~-----  138 (170)
T d1nyta1          81 DLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGK----------TPFL-----AWC-EQRGSKR-NADGLG-----  138 (170)
T ss_dssp             SEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSC----------CHHH-----HHH-HHTTCCE-EECTHH-----
T ss_pred             ceeecccccCcccCCCCCcHHHhccCcEEEEeecCCCC----------CHHH-----HHH-HHcCCCc-ccCCHH-----
Confidence            99999998543     2556778999999999999987          6888     555 6777732 367888     


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 027976          200 MLLSNTLDSAKRAYGFT  216 (216)
Q Consensus       200 mLl~n~~~a~~~~~~~~  216 (216)
                      ||++|++.+|++|+|++
T Consensus       139 MLi~Qa~~~f~lwtG~~  155 (170)
T d1nyta1         139 MLVAQAAHAFLLWHGVL  155 (170)
T ss_dssp             HHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            99999999999999974

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1e-21  Score=158.07  Aligned_cols=129  Identities=22%  Similarity=0.228  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCCC--------------------------
Q 027976           64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN--------------------------  116 (216)
Q Consensus        64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~~--------------------------  116 (216)
                      ..|+++.|++.+++++||+|+|+|+||+ ||+++..|...|+ ++++++|+.+.                          
T Consensus         2 ~~Gf~~~l~~~~~~l~~k~vlIlGaGGa-arai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (182)
T d1vi2a1           2 GTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD   80 (182)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC
T ss_pred             HHHHHHHHHHcCCCcCCCEEEEECCcHH-HHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc
Confidence            4899999999999999999999999998 9999999999997 69999997432                          


Q ss_pred             ---HHhhccCCCEEEEecCCCCc--------ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcce
Q 027976          117 ---PEQITSEADIVIAAAGVANL--------VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV  185 (216)
Q Consensus       117 ---l~~~~~~ADIVIsatg~p~~--------i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~  185 (216)
                         +.+.+.++|+|||+|+..+.        .+.+.++++.+|+|+.|+|.+          |+|+     +.+ ++.|+
T Consensus        81 ~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~----------T~ll-----~~a-~~~g~  144 (182)
T d1vi2a1          81 QQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHM----------TKLL-----QQA-QQAGC  144 (182)
T ss_dssp             HHHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSS----------CHHH-----HHH-HTTTC
T ss_pred             ccchhhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCccc----------cHHH-----HHH-HHCcC
Confidence               22345789999999985321        234557889999999999987          6888     554 78899


Q ss_pred             ecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 027976          186 ITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  216 (216)
Q Consensus       186 ~tpvpgGvGp~T~amLl~n~~~a~~~~~~~~  216 (216)
                        ++.+|.+     ||++|++.+|++|||++
T Consensus       145 --~~i~Gl~-----Mli~Qa~~~f~iwtg~~  168 (182)
T d1vi2a1         145 --KTIDGYG-----MLLWQGAEQFTLWTGKD  168 (182)
T ss_dssp             --EEECHHH-----HHHHHHHHHHHHHHSSC
T ss_pred             --eEeccHH-----HHHHHHHHHHHHHhCCC
Confidence              4578988     99999999999999974

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.85  E-value=7.1e-22  Score=157.28  Aligned_cols=128  Identities=12%  Similarity=0.170  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCCC---HH----------hhccCCCEEEE
Q 027976           64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN---PE----------QITSEADIVIA  129 (216)
Q Consensus        64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~~---l~----------~~~~~ADIVIs  129 (216)
                      ..|+.++|++++++ ++|+|+|+|+||+ +|+++..|.+.|+ +|+|++|+.+.   +.          ....++|+|||
T Consensus         2 ~~G~~~~l~~~~~~-~~~~vlIlGaGGa-arai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~~~~~DliIN   79 (167)
T d1npya1           2 YIAIVKLIEKYHLN-KNAKVIVHGSGGM-AKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVN   79 (167)
T ss_dssp             HHHHHHHHHHTTCC-TTSCEEEECSSTT-HHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTTCCCSEEEE
T ss_pred             hHHHHHHHHHcCCC-CCCeEEEECCCHH-HHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcccccchhhhee
Confidence            37999999999998 8999999999998 9999999999997 69999997321   11          12457899999


Q ss_pred             ecCCCC---------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHHHH
Q 027976          130 AAGVAN---------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAM  200 (216)
Q Consensus       130 atg~p~---------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~am  200 (216)
                      ||+..+         .++...++++.+|+|+.|+|.+          |+|+     +.+ ++.|+  ++.+|.+     |
T Consensus        80 aTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~----------T~ll-----~~A-~~~G~--~~i~Gl~-----M  136 (167)
T d1npya1          80 VTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVE----------TPFI-----RYA-QARGK--QTISGAA-----V  136 (167)
T ss_dssp             CSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSS----------CHHH-----HHH-HHTTC--EEECHHH-----H
T ss_pred             ccccCCccccccccccccHhhcCCcceEEEEeeccCC----------CHHH-----HHH-HHCCC--eEEECHH-----H
Confidence            998532         1334456788999999999987          6888     555 78899  4578988     9


Q ss_pred             HHHHHHHHHHHHhCCC
Q 027976          201 LLSNTLDSAKRAYGFT  216 (216)
Q Consensus       201 Ll~n~~~a~~~~~~~~  216 (216)
                      |++|++.+|++|+|+.
T Consensus       137 li~Qa~~~f~lwtg~~  152 (167)
T d1npya1         137 IVLQAVEQFELYTHQR  152 (167)
T ss_dssp             HHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999999974

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.84  E-value=4e-21  Score=153.82  Aligned_cols=128  Identities=21%  Similarity=0.259  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------------CHHh
Q 027976           64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------NPEQ  119 (216)
Q Consensus        64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------~l~~  119 (216)
                      ..|+++.|++++.+++||+|+|+|+||+ +|+++..|.+.| +|+|++|+.+                        ++..
T Consensus         2 ~~G~~~~l~~~~~~~~~k~vlIlGaGG~-arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~   79 (177)
T d1nvta1           2 GIGARMALEEEIGRVKDKNIVIYGAGGA-ARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDV   79 (177)
T ss_dssp             HHHHHHHHHHHHCCCCSCEEEEECCSHH-HHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTC
T ss_pred             HHHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhh
Confidence            3899999999999999999999999998 999999998776 9999999732                        2234


Q ss_pred             hccCCCEEEEecCCCC--------cccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhhHcceecccCC
Q 027976          120 ITSEADIVIAAAGVAN--------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPG  191 (216)
Q Consensus       120 ~~~~ADIVIsatg~p~--------~i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpg  191 (216)
                      ...++|++|++|+.+.        .++.+.++++.+++|+.|+|.+          |+|+     +.+ +.+|+  ++.+
T Consensus        80 ~~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~----------T~l~-----~~a-~~~G~--~~i~  141 (177)
T d1nvta1          80 DLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLE----------TVLL-----KEA-KKVNA--KTIN  141 (177)
T ss_dssp             CCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSS----------CHHH-----HHH-HTTTC--EEEC
T ss_pred             ccchhhhhccCCcccccccccccchhhhhccCcccceeeecCCcHh----------HHHH-----HHH-HHCCC--cccC
Confidence            4677899999998643        1455677889999999999987          6788     444 77888  4578


Q ss_pred             cccHHHHHHHHHHHHHHHHHHhCCC
Q 027976          192 GVGPMTVAMLLSNTLDSAKRAYGFT  216 (216)
Q Consensus       192 GvGp~T~amLl~n~~~a~~~~~~~~  216 (216)
                      |++     ||++|++.+|++|+|.+
T Consensus       142 Gl~-----MLv~Qa~~qf~lwtg~~  161 (177)
T d1nvta1         142 GLG-----MLIYQGAVAFKIWTGVE  161 (177)
T ss_dssp             THH-----HHHHHHHHHHHHHHSSC
T ss_pred             CHH-----HHHHHHHHHHHHHHCCC
Confidence            987     99999999999999974

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=99.82  E-value=4.3e-21  Score=153.41  Aligned_cols=130  Identities=18%  Similarity=0.176  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCH-------------------HhhccCC
Q 027976           64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP-------------------EQITSEA  124 (216)
Q Consensus        64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l-------------------~~~~~~A  124 (216)
                      ..|+++.|++.+++++||+|+|+|+||+ +|+++..|.+.+.+|+|++|+.+..                   ...+.++
T Consensus         2 ~~Gf~~~l~~~~~~~~~k~vlIlGaGGa-arai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1p77a1           2 GIGLVTDLQRLNWLRPNQHVLILGAGGA-TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTY   80 (171)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCC
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEECCcHH-HHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhcccccccc
Confidence            4899999999999999999999999998 9999999998878999999974211                   1235689


Q ss_pred             CEEEEecCCCCc-----ccCCcccCCcEEEEeee-CCccCCCCCCCCCCCeEecccChHHHhhHcceecccCCcccHHHH
Q 027976          125 DIVIAAAGVANL-----VRGSWLKPGAVVLDVGT-CPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV  198 (216)
Q Consensus       125 DIVIsatg~p~~-----i~~~~i~~g~vViDvg~-~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~  198 (216)
                      |+|||+|+..+.     ...+.++++.+++|+.| +|.+          |+|+     ..+ ++.|+.+ +.+|++    
T Consensus        81 diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~----------T~~l-----~~A-~~~g~~~-v~~Gl~----  139 (171)
T d1p77a1          81 DLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTD----------TPFI-----ALC-KSLGLTN-VSDGFG----  139 (171)
T ss_dssp             SEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSC----------CHHH-----HHH-HHTTCCC-EECSHH----
T ss_pred             ceeeecccccccccccchhhhhhcccceeeeeeccCccc----------HHHH-----HHH-HHcCCCc-ccCcHH----
Confidence            999999986432     23344677899999999 5655          6788     444 7788744 567988    


Q ss_pred             HHHHHHHHHHHHHHhCCC
Q 027976          199 AMLLSNTLDSAKRAYGFT  216 (216)
Q Consensus       199 amLl~n~~~a~~~~~~~~  216 (216)
                       ||++|++.+|++|+|.+
T Consensus       140 -Ml~~Qa~~~f~iwtg~~  156 (171)
T d1p77a1         140 -MLVAQAAHSFHLWRGVM  156 (171)
T ss_dssp             -HHHHHHHHHHHHHHSCC
T ss_pred             -HHHHHHHHHHHHHHCCC
Confidence             99999999999999974

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=2.5e-18  Score=134.10  Aligned_cols=57  Identities=16%  Similarity=0.100  Sum_probs=53.8

Q ss_pred             cCccEEEEccCCCCCCCHHHHHhcCCcccccCccCccccccccccCCCCccCCCcHHHH
Q 027976            9 LMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC   67 (216)
Q Consensus         9 ~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~   67 (216)
                      -.+|||+||+|||+|+++++++++|+|+|||||+|+.|.|+|+.|  ..++.||||.|+
T Consensus        88 ~~V~GIlvQlPLP~~i~~~~i~~~I~p~KDVDGl~p~N~G~L~~~--~~~l~P~t~~~~  144 (146)
T d1edza2          88 DSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHN--VRYLDKENRLKS  144 (146)
T ss_dssp             TTCCEEEECSCSSSSHHHHHHTTTSCTTTBTTCCSHHHHHHHHTT--CCBSSSSSCSBC
T ss_pred             hhhhhhhhcCCCCcccCHHHHHHhcCCCCCcCCCChHhHHHHHcC--CCCCCCCCccCc
Confidence            478999999999999999999999999999999999999999976  788899999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.45  E-value=6.6e-14  Score=110.01  Aligned_cols=94  Identities=14%  Similarity=0.188  Sum_probs=80.6

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-----------------CCHHhhccCC
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-----------------KNPEQITSEA  124 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-----------------~~l~~~~~~A  124 (216)
                      .++++++++++...++++++++|||+|++ |+.++..|...|+ ++++++|+.                 .++.+.+.++
T Consensus         7 v~~aAv~la~~~~~~l~~~~ilviGaG~~-g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~   85 (159)
T d1gpja2           7 IGSAAVELAERELGSLHDKTVLVVGAGEM-GKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARS   85 (159)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEESCCHH-HHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCcccCeEEEECCCHH-HHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccC
Confidence            46778888888777899999999999987 9999999999998 599999972                 3567889999


Q ss_pred             CEEEEecCCCCc-ccCCccc---------CCcEEEEeeeCCcc
Q 027976          125 DIVIAAAGVANL-VRGSWLK---------PGAVVLDVGTCPVD  157 (216)
Q Consensus       125 DIVIsatg~p~~-i~~~~i~---------~g~vViDvg~~~~~  157 (216)
                      |+||+||+.|++ ++.++++         ...++||++++++.
T Consensus        86 Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~v  128 (159)
T d1gpja2          86 DVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDV  128 (159)
T ss_dssp             SEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSB
T ss_pred             CEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCCCc
Confidence            999999999987 7888874         24599999998865

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.25  E-value=1.2e-11  Score=97.07  Aligned_cols=88  Identities=23%  Similarity=0.303  Sum_probs=76.8

Q ss_pred             HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCCCC
Q 027976           69 ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        69 ~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      .+++.++..+.||+++|+|.|.. ||.+|+.|...|++|+|+...+             ..+.+.++.+|++|++||.++
T Consensus        12 ~i~r~t~~~laGk~vvV~GYG~v-GrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTGn~~   90 (163)
T d1v8ba1          12 GLMRATDFLISGKIVVICGYGDV-GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVD   90 (163)
T ss_dssp             HHHHHHCCCCTTSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSS
T ss_pred             HHHHHhCceecCCEEEEeccccc-chhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCCCCc
Confidence            34456789999999999999985 9999999999999999997762             367899999999999999998


Q ss_pred             cccCCcc---cCCcEEEEeeeCCcc
Q 027976          136 LVRGSWL---KPGAVVLDVGTCPVD  157 (216)
Q Consensus       136 ~i~~~~i---~~g~vViDvg~~~~~  157 (216)
                      .|+.++|   |+|+++.++|+...|
T Consensus        91 vI~~~h~~~MKdgaIl~N~GHfd~E  115 (163)
T d1v8ba1          91 VIKLEHLLKMKNNAVVGNIGHFDDE  115 (163)
T ss_dssp             SBCHHHHTTCCTTCEEEECSSTTTS
T ss_pred             cccHHHHHHhhCCeEEEeccccchh
Confidence            8888765   789999999988655

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.3e-11  Score=94.76  Aligned_cols=92  Identities=25%  Similarity=0.388  Sum_probs=78.6

Q ss_pred             HHHHH-HHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEe
Q 027976           65 KGCIE-LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        65 ~g~~~-~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsa  130 (216)
                      +.+++ +++.++..+.||+++|+|.|.. ||.+|..|...|++|+++....             ..+.+.++.||++|++
T Consensus         8 ~S~~~~~~r~t~~~l~Gk~v~V~GyG~i-G~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvta   86 (163)
T d1li4a1           8 ESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTT   86 (163)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC
T ss_pred             hhHHHHHHHHhCceecCCEEEEeccccc-cHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEec
Confidence            44443 4456899999999999999985 9999999999999999997762             3678999999999999


Q ss_pred             cCCCCcccCCcc---cCCcEEEEeeeCCcc
Q 027976          131 AGVANLVRGSWL---KPGAVVLDVGTCPVD  157 (216)
Q Consensus       131 tg~p~~i~~~~i---~~g~vViDvg~~~~~  157 (216)
                      ||.++.|+.++|   |+|+++.++|....|
T Consensus        87 TGn~~vI~~eh~~~MKdgaIL~N~Ghfd~E  116 (163)
T d1li4a1          87 TGCIDIILGRHFEQMKDDAIVCNIGHFDVE  116 (163)
T ss_dssp             SSCSCSBCHHHHTTCCTTEEEEECSSSTTS
T ss_pred             CCCccchhHHHHHhccCCeEEEEeccccce
Confidence            999998988775   789999999987654

>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=5.3e-10  Score=83.66  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             ccCccEEEEccCCCCCCCHHHHHhcCCcccccCc
Q 027976            8 FLMPCQIIIRIHQLMHLDEGKILDAVSLEKDVDG   41 (216)
Q Consensus         8 ~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p~KDvdg   41 (216)
                      +-.+|||+||+|||+|+++++++++|+|+|||||
T Consensus        88 d~~v~GIlvqlPLP~~i~~~~i~~~I~p~KDVDG  121 (121)
T d1b0aa2          88 DNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG  121 (121)
T ss_dssp             CTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTC
T ss_pred             CCchhhhhhcCCCCCCcCHHHHHhccCcCcCCCC
Confidence            3679999999999999999999999999999998

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.88  E-value=9.6e-10  Score=87.45  Aligned_cols=94  Identities=21%  Similarity=0.255  Sum_probs=71.2

Q ss_pred             CCcHHHHHHHH-HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------------
Q 027976           61 PCTPKGCIELL-IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------  114 (216)
Q Consensus        61 p~Ta~g~~~~L-~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------------  114 (216)
                      ++|+.|.+..+ +..+.+|+||+++|.|+++-+|+.++..|+++|++|+++.|+.                         
T Consensus         3 ~~~~~~~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~   82 (191)
T d1luaa1           3 NTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD   82 (191)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS
T ss_pred             CccHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhccc
Confidence            35667777777 5568999999999999888789999999999999999998762                         


Q ss_pred             -CCHHhhccCCCEEEEecCCCC-cccCCcccC---CcEEEEeeeC
Q 027976          115 -KNPEQITSEADIVIAAAGVAN-LVRGSWLKP---GAVVLDVGTC  154 (216)
Q Consensus       115 -~~l~~~~~~ADIVIsatg~p~-~i~~~~i~~---g~vViDvg~~  154 (216)
                       .++++.+.++|+||+++|.+. .++.+.++.   -.++.|+-+.
T Consensus        83 ~~~~~~~~~~iDilin~Ag~g~~~~~~e~~~~~~~~nv~~~~~~~  127 (191)
T d1luaa1          83 DASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQ  127 (191)
T ss_dssp             HHHHHHHTTTCSEEEECCCTTCCCBCHHHHHTCTTCCEEEECCCS
T ss_pred             HHHHHHHhcCcCeeeecCccccccCCHHHHHhhhcceeehhHhhH
Confidence             135677899999999998643 355555443   2345555444

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.75  E-value=5.4e-09  Score=82.17  Aligned_cols=77  Identities=26%  Similarity=0.339  Sum_probs=64.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------CCHHhhccCCCEEEEecCC---
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAGV---  133 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~---  133 (216)
                      .+..+|+|||+|-+ |...+..+...||.|++++.+.                     ..+.+.+++||+||+++=.   
T Consensus        30 v~pa~V~ViGaGva-G~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          30 VKPGKVVILGGGVV-GTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             BCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCcEEEEECCChH-HHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            46789999999876 9999999999999999997651                     2467899999999998843   


Q ss_pred             --CCcccCCcc---cCCcEEEEeeeCC
Q 027976          134 --ANLVRGSWL---KPGAVVLDVGTCP  155 (216)
Q Consensus       134 --p~~i~~~~i---~~g~vViDvg~~~  155 (216)
                        |.+|+++|+   |||+++||++...
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDvaidq  135 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVAVDQ  135 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEeecCC
Confidence              556898886   7899999999864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.52  E-value=1e-07  Score=75.62  Aligned_cols=77  Identities=22%  Similarity=0.277  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC------------------------------------------
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------------------------  115 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------------------------  115 (216)
                      +...+|+|||+|-+ |...+......||.|++++.+..                                          
T Consensus        27 V~pa~VvViGaGva-G~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          27 VPPARVLVFGVGVA-GLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             ECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             cCCcEEEEEcCcHH-HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            34568999999875 99999999999999999965411                                          


Q ss_pred             -CHHhhccCCCEEEEecCC-----CCcccCCcc---cCCcEEEEeeeCC
Q 027976          116 -NPEQITSEADIVIAAAGV-----ANLVRGSWL---KPGAVVLDVGTCP  155 (216)
Q Consensus       116 -~l~~~~~~ADIVIsatg~-----p~~i~~~~i---~~g~vViDvg~~~  155 (216)
                       .+.+.+++||+||+++=.     |.+|+++|+   |||++++|++...
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidq  154 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  154 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecC
Confidence             133458899999988843     446888886   7899999999854

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.43  E-value=3e-07  Score=72.61  Aligned_cols=77  Identities=25%  Similarity=0.303  Sum_probs=64.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------CCHHhhccCCCEEEEecCC-C---CcccCCc---
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------KNPEQITSEADIVIAAAGV-A---NLVRGSW---  141 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------~~l~~~~~~ADIVIsatg~-p---~~i~~~~---  141 (216)
                      .++||++.|||.|.+ |+.++.+|...|++|+.+++..        .++.+.+++||+|+.+++. +   ++++.+.   
T Consensus        39 ~l~gk~vgIiG~G~I-G~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~  117 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEI-GTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL  117 (181)
T ss_dssp             CCTTCEEEEESCSTH-HHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             cccCceEEEeccccc-cccceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccccccccccccceeee
Confidence            378999999999986 9999999999999999998753        3688999999999998873 3   3566654   


Q ss_pred             ccCCcEEEEeeeC
Q 027976          142 LKPGAVVLDVGTC  154 (216)
Q Consensus       142 i~~g~vViDvg~~  154 (216)
                      +++++++|+++-.
T Consensus       118 mk~~ailIN~~RG  130 (181)
T d1qp8a1         118 MAEDAVFVNVGRA  130 (181)
T ss_dssp             SCTTCEEEECSCG
T ss_pred             ccccceEEecccc
Confidence            4789999999844

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.29  E-value=4.8e-07  Score=68.79  Aligned_cols=77  Identities=16%  Similarity=0.142  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHHhhccCCCEEEEecCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------~l~~~~~~ADIVIsatg~p~  135 (216)
                      .+|+|+|||+|.+ |+++|..|.++|.+|++++|+.+                       .+...+..+|++|++++...
T Consensus         1 ~~K~IliiGaG~~-G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~   79 (182)
T d1e5qa1           1 ATKSVLMLGSGFV-TRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF   79 (182)
T ss_dssp             CCCEEEEECCSTT-HHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGG
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchh
Confidence            4799999999886 99999999999999999998721                       23456788899998887432


Q ss_pred             c--ccCCcccCCcEEEEeeeCCc
Q 027976          136 L--VRGSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       136 ~--i~~~~i~~g~vViDvg~~~~  156 (216)
                      .  +.....+.+..++|+.+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
T d1e5qa1          80 HATVIKSAIRQKKHVVTTSYVSP  102 (182)
T ss_dssp             HHHHHHHHHHHTCEEECSSCCCH
T ss_pred             hhHHHHHHHhhccceeecccCcH
Confidence            1  23344456778889887653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.25  E-value=7.7e-07  Score=71.20  Aligned_cols=80  Identities=18%  Similarity=0.300  Sum_probs=65.8

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------CCHHhhccCCCEEEEecCC----CCcccC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGV----ANLVRG  139 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------~~l~~~~~~ADIVIsatg~----p~~i~~  139 (216)
                      +.++.||++.|||.|.+ |+.+|.+|...|++|..+++..           .++.+.+++||+|+...+.    .+++..
T Consensus        38 g~el~gk~vgIiG~G~I-G~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~  116 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHI-GQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMIND  116 (197)
T ss_dssp             BCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH
T ss_pred             CccccCCeEEEeccccc-chhHHHhHhhhcccccccCcccccccccceeeeccccccccccccccccCCccccccccccH
Confidence            45789999999999986 9999999999999999887542           3688999999999998873    235666


Q ss_pred             Cc---ccCCcEEEEeeeCC
Q 027976          140 SW---LKPGAVVLDVGTCP  155 (216)
Q Consensus       140 ~~---i~~g~vViDvg~~~  155 (216)
                      +.   +++++++|+++-..
T Consensus       117 ~~l~~mk~~a~lIN~sRG~  135 (197)
T d1j4aa1         117 ESIAKMKQDVVIVNVSRGP  135 (197)
T ss_dssp             HHHHHSCTTEEEEECSCGG
T ss_pred             HHHhhhCCccEEEecCchh
Confidence            65   47899999998654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.20  E-value=1.7e-06  Score=68.81  Aligned_cols=83  Identities=16%  Similarity=0.259  Sum_probs=67.2

Q ss_pred             HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------CCHHhhccCCCEEEEecCC-C---C
Q 027976           73 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-A---N  135 (216)
Q Consensus        73 ~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~ADIVIsatg~-p---~  135 (216)
                      ..+.++.||++.|||.|.+ |+.+|..|...|++|..+.+..             .++.+.+++||+|+..++. +   +
T Consensus        42 ~~~~eL~gktvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~  120 (193)
T d1mx3a1          42 SGAARIRGETLGIIGLGRV-GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH  120 (193)
T ss_dssp             TTCCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTT
T ss_pred             cCceeeeCceEEEeccccc-cccceeeeeccccceeeccCcccccchhhhccccccchhhccccCCEEEEeecccccchh
Confidence            3467899999999999986 9999999999999999887642             3688999999999988773 2   2


Q ss_pred             cccCC---cccCCcEEEEeeeCCc
Q 027976          136 LVRGS---WLKPGAVVLDVGTCPV  156 (216)
Q Consensus       136 ~i~~~---~i~~g~vViDvg~~~~  156 (216)
                      ++..+   .+++++++|+++--..
T Consensus       121 li~~~~l~~mk~~a~lIN~sRG~i  144 (193)
T d1mx3a1         121 LINDFTVKQMRQGAFLVNTARGGL  144 (193)
T ss_dssp             SBSHHHHTTSCTTEEEEECSCTTS
T ss_pred             hhhHHHHhccCCCCeEEecCCceE
Confidence            46655   4578999999986543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=1.1e-06  Score=61.49  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++||+|+|+|.|.+ |+++|.+|.++|++|++++.+.
T Consensus         2 ~~~~K~v~ViGlG~s-G~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHH-HHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEeeCCc
Confidence            689999999999998 9999999999999999998754

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=2.5e-06  Score=67.27  Aligned_cols=81  Identities=20%  Similarity=0.297  Sum_probs=67.4

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------CCHHhhccCCCEEEEecCC-C---CcccCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV-A---NLVRGS  140 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~ADIVIsatg~-p---~~i~~~  140 (216)
                      ..++.|+++.|+|.|.+ |+.++.+|...|++|+...+..          .++.+.+++||||+...+. +   ++++.+
T Consensus        39 ~~~l~~~~vgiiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~  117 (188)
T d1sc6a1          39 SFEARGKKLGIIGYGHI-GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK  117 (188)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHH
T ss_pred             cccccceEEEEeecccc-hhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHH
Confidence            45789999999999986 9999999999999999997652          3688999999999988873 3   357776


Q ss_pred             cc---cCCcEEEEeeeCCc
Q 027976          141 WL---KPGAVVLDVGTCPV  156 (216)
Q Consensus       141 ~i---~~g~vViDvg~~~~  156 (216)
                      .|   ++++++|+++-...
T Consensus       118 ~l~~mk~~a~lIN~aRG~l  136 (188)
T d1sc6a1         118 EISLMKPGSLLINASRGTV  136 (188)
T ss_dssp             HHHHSCTTEEEEECSCSSS
T ss_pred             HHhhCCCCCEEEEcCcHHh
Confidence            64   78999999987654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.11  E-value=4.4e-06  Score=65.83  Aligned_cols=82  Identities=12%  Similarity=0.205  Sum_probs=66.7

Q ss_pred             hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCC-C---C
Q 027976           74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---N  135 (216)
Q Consensus        74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~-p---~  135 (216)
                      ...+++|+++.|+|.|.+ |+.++.+|...|++|....+..              .++.+.+++||+|+...+. +   +
T Consensus        38 ~~~~l~~~~vgiiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~  116 (188)
T d2naca1          38 HAYDLEAMHVGTVAAGRI-GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEH  116 (188)
T ss_dssp             TCCCCTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTT
T ss_pred             cceeccccceeecccccc-chhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchh
Confidence            466899999999999986 9999999999999999887642              3678999999999988873 2   2


Q ss_pred             cccCCc---ccCCcEEEEeeeCCc
Q 027976          136 LVRGSW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       136 ~i~~~~---i~~g~vViDvg~~~~  156 (216)
                      ++..+.   +++|+++|+++--..
T Consensus       117 li~~~~l~~mk~ga~lIN~aRG~i  140 (188)
T d2naca1         117 MINDETLKLFKRGAYIVNTARGKL  140 (188)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGGG
T ss_pred             hhHHHHHHhCCCCCEEEecCchhh
Confidence            466654   478999999986543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=3e-06  Score=66.73  Aligned_cols=81  Identities=21%  Similarity=0.314  Sum_probs=66.2

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC------------CCHHhhccCCCEEEEecCC-C---Cccc
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLVR  138 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~ADIVIsatg~-p---~~i~  138 (216)
                      +.++.||++.|+|.|.+ |+.++..|...|++|....+..            .++.+.+++||+|+..++. +   +++.
T Consensus        39 ~~~l~~k~vgiiG~G~I-G~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin  117 (184)
T d1ygya1          39 GTEIFGKTVGVVGLGRI-GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  117 (184)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             cccccceeeeeccccch-hHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhh
Confidence            45689999999999986 9999999999999998887653            3678899999999988873 3   3576


Q ss_pred             CCc---ccCCcEEEEeeeCCc
Q 027976          139 GSW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       139 ~~~---i~~g~vViDvg~~~~  156 (216)
                      .+.   +++++++|+++--..
T Consensus       118 ~~~l~~mk~~a~lIN~sRG~i  138 (184)
T d1ygya1         118 KEALAKTKPGVIIVNAARGGL  138 (184)
T ss_dssp             HHHHTTSCTTEEEEECSCTTS
T ss_pred             HHHHhhhCCCceEEEecchhh
Confidence            654   478999999986554

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.10  E-value=2.6e-06  Score=67.94  Aligned_cols=81  Identities=20%  Similarity=0.302  Sum_probs=66.6

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------CCHHhhccCCCEEEEecCC-C---CcccCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV-A---NLVRGS  140 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~ADIVIsatg~-p---~~i~~~  140 (216)
                      +.++.||++.|+|.|.+ |+.++.+|...|++|..+++..          .++.+.+++||+|+..++. +   ++++.+
T Consensus        40 ~~~l~~ktvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~  118 (199)
T d1dxya1          40 GKELGQQTVGVMGTGHI-GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEA  118 (199)
T ss_dssp             CCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHH
T ss_pred             cccccceeeeeeecccc-cccccccccccceeeeccCCccchhhhcchhHHHHHHHHHhcccceeeecccccccccccHH
Confidence            46789999999999986 9999999999999999997652          2678899999999988873 2   256666


Q ss_pred             c---ccCCcEEEEeeeCCc
Q 027976          141 W---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       141 ~---i~~g~vViDvg~~~~  156 (216)
                      .   +++++++|+++--..
T Consensus       119 ~l~~mk~~a~lIN~aRG~v  137 (199)
T d1dxya1         119 AFNLMKPGAIVINTARPNL  137 (199)
T ss_dssp             HHHHSCTTEEEEECSCTTS
T ss_pred             HhhccCCceEEEecccHhh
Confidence            5   478999999986543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.02  E-value=5.8e-06  Score=65.55  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=66.2

Q ss_pred             hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCC-C---C
Q 027976           74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---N  135 (216)
Q Consensus        74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~-p---~  135 (216)
                      .+.+++||++.|+|.|.+ |+.++.+|...|++|....+..              .++.+.+++||+|+...+. +   +
T Consensus        41 ~~~~l~g~tvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~  119 (191)
T d1gdha1          41 VGEKLDNKTLGIYGFGSI-GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRY  119 (191)
T ss_dssp             CBCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             ccceecccceEEeecccc-hHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhh
Confidence            345788999999999986 9999999999999998886542              3678999999999988873 3   3


Q ss_pred             cccCCc---ccCCcEEEEeeeCCc
Q 027976          136 LVRGSW---LKPGAVVLDVGTCPV  156 (216)
Q Consensus       136 ~i~~~~---i~~g~vViDvg~~~~  156 (216)
                      +|+.+.   +|+++++|+++-...
T Consensus       120 li~~~~l~~mk~~a~lIN~sRG~i  143 (191)
T d1gdha1         120 FFNKATIKSLPQGAIVVNTARGDL  143 (191)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGGG
T ss_pred             eecHHHhhCcCCccEEEecCCccc
Confidence            566654   578999999986543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.00  E-value=6.6e-06  Score=62.97  Aligned_cols=71  Identities=17%  Similarity=0.188  Sum_probs=56.2

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-----------------------------CCCHHhhccCCCEEEEe
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-----------------------------TKNPEQITSEADIVIAA  130 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-----------------------------t~~l~~~~~~ADIVIsa  130 (216)
                      .|+++|||+|.+ |.++|..|++.|.+|++..|.                             +.++.+.+++||+||-+
T Consensus         1 sk~iaIiGaG~~-G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLGLGNG-GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            489999999875 999999999999999999764                             13567889999999999


Q ss_pred             cCCCCc---c--cCCcccCCcEEEEe
Q 027976          131 AGVANL---V--RGSWLKPGAVVLDV  151 (216)
Q Consensus       131 tg~p~~---i--~~~~i~~g~vViDv  151 (216)
                      ++....   +  -..+++++.+|+..
T Consensus        80 v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          80 VPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EchhHHHHHHHHhhhccCCCCEEEEe
Confidence            986541   1  13467788877644

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.97  E-value=6e-06  Score=62.15  Aligned_cols=76  Identities=18%  Similarity=0.214  Sum_probs=60.3

Q ss_pred             CCCCeEEEEc-CCchhHHHHHHHHHhCCCEEEEEeCCCC-CHHhhccCCCEEEEecCCCCc--c---cCCcccCCcEEEE
Q 027976           78 IMGKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK-NPEQITSEADIVIAAAGVANL--V---RGSWLKPGAVVLD  150 (216)
Q Consensus        78 l~gk~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~-~l~~~~~~ADIVIsatg~p~~--i---~~~~i~~g~vViD  150 (216)
                      ..=|+|.||| .|.+ |+++|..|.+.|.+|+++++... ...+..+++|+++.+++....  +   -...++++.+++|
T Consensus         7 ~~~~kI~iIGg~G~m-G~~la~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD   85 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKL-GGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLAD   85 (152)
T ss_dssp             TTCCCEEEETTTSHH-HHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEE
T ss_pred             CCCCeEEEEcCCCHH-HHHHHHHHHHcCCCcEecccccccccchhhhhccccccccchhhheeeeecccccccCCceEEE
Confidence            4457999999 6765 99999999999999999998763 456678999999999986442  1   1234578999999


Q ss_pred             eeeC
Q 027976          151 VGTC  154 (216)
Q Consensus       151 vg~~  154 (216)
                      ++..
T Consensus        86 ~~Sv   89 (152)
T d2pv7a2          86 LTSV   89 (152)
T ss_dssp             CCSC
T ss_pred             eccc
Confidence            9864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.91  E-value=9.5e-06  Score=61.90  Aligned_cols=73  Identities=19%  Similarity=0.281  Sum_probs=58.8

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc----c-cCC--
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----V-RGS--  140 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~----i-~~~--  140 (216)
                      +|-+||.|.+ |.++|..|++.|.+|++++++.              .+..+.++++|+||.+++.+.-    + ..+  
T Consensus         2 kIgiIGlG~M-G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           2 KVGFIGLGIM-GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             EEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             EEEEEehhHH-HHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            5889999886 9999999999999999998873              3567889999999999986542    1 112  


Q ss_pred             --cccCCcEEEEeeeCC
Q 027976          141 --WLKPGAVVLDVGTCP  155 (216)
Q Consensus       141 --~i~~g~vViDvg~~~  155 (216)
                        ..+++.+++|++...
T Consensus        81 ~~~~~~g~iiid~sT~~   97 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIA   97 (161)
T ss_dssp             HHHCCTTCEEEECSCCC
T ss_pred             hhccCCCCEEEECCCCC
Confidence              246899999998754

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.87  E-value=1.5e-05  Score=60.83  Aligned_cols=74  Identities=20%  Similarity=0.377  Sum_probs=59.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc---c--cC--
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL---V--RG--  139 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~---i--~~--  139 (216)
                      ++|-+||.|.+ |.++|..|++.|.+|++++++.              .++.+.++++|+|+.+++.+..   +  ..  
T Consensus         2 ~kIg~IGlG~M-G~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~   80 (162)
T d3cuma2           2 KQIAFIGLGHM-GAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   80 (162)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTC
T ss_pred             CEEEEEEEHHH-HHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccc
Confidence            57999999886 9999999999999999998862              3678999999999999986531   1  11  


Q ss_pred             --CcccCCcEEEEeeeCC
Q 027976          140 --SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       140 --~~i~~g~vViDvg~~~  155 (216)
                        ..++++.++||++...
T Consensus        81 ~~~~l~~g~iiid~st~~   98 (162)
T d3cuma2          81 LLAHIAPGTLVLECSTIA   98 (162)
T ss_dssp             HHHHSCTTCEEEECSCCC
T ss_pred             ccccCCCCCEEEECCCCC
Confidence              2357899999998654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.79  E-value=2.5e-05  Score=56.17  Aligned_cols=59  Identities=14%  Similarity=0.205  Sum_probs=44.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-CCH-----------------HhhccCCCEEEEecCCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP-----------------EQITSEADIVIAAAGVAN  135 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l-----------------~~~~~~ADIVIsatg~p~  135 (216)
                      ++++||+|+|||.|.. |..-+..|++.||+|++..... +++                 .+.+..+++|+.+++.+.
T Consensus         8 l~l~~k~vlVvG~G~v-a~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~   84 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDV-AERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT   84 (113)
T ss_dssp             ECCBTCEEEEECCSHH-HHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH
T ss_pred             EEeCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHH
Confidence            4789999999999985 9999999999999999985542 111                 234566777777776543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=2.1e-05  Score=60.77  Aligned_cols=95  Identities=20%  Similarity=0.290  Sum_probs=68.4

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHH
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPE  118 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~  118 (216)
                      ..+|.+..+...+++....-.|.+|+|+|+|+ +|..+++.+...|+ +|+++.++.                   .+..
T Consensus         8 ~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~-iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~   86 (182)
T d1vj0a2           8 MAMCSGATAYHAFDEYPESFAGKTVVIQGAGP-LGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVE   86 (182)
T ss_dssp             HHTTHHHHHHHHHHTCSSCCBTCEEEEECCSH-HHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHH
T ss_pred             HhhcHHHHHHHHHHHHhCCCCCCEEEEECCCc-cchhheecccccccccccccccccccccccccccceEEEeccccchH
Confidence            35787777888887765545799999999986 59999999999998 688886541                   1221


Q ss_pred             h-------hc--cCCCEEEEecCCCCccc--CCcccCCcEEEEeeeC
Q 027976          119 Q-------IT--SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       119 ~-------~~--~~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~  154 (216)
                      +       ..  +.+|+||.++|.+..+.  -+.++++..++-+|..
T Consensus        87 ~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2          87 ERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             HHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeec
Confidence            1       11  13799999999876432  3567887777777754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=4.8e-05  Score=59.48  Aligned_cols=57  Identities=19%  Similarity=0.231  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------CCHHhhccCCCEEEEecCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      ..|||+|+|++|.+|+.++..|+++|.+|++..|+.                     .++.+.++.+|+||+++|...
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~   79 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN   79 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccCC
Confidence            468999999999899999999999999999997752                     135678999999999998543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.68  E-value=2.1e-05  Score=59.79  Aligned_cols=72  Identities=21%  Similarity=0.196  Sum_probs=55.6

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------CHHhhccCCCEEEEecCCCC---ccc--CCc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGVAN---LVR--GSW  141 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~~ADIVIsatg~p~---~i~--~~~  141 (216)
                      ||.|||.|.+ |.++|..|.+.|.+|+.++++.+               +..+.+++||+||-+++...   .+.  .+.
T Consensus         2 kI~iIG~G~m-G~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~~l~~~   80 (165)
T d2f1ka2           2 KIGVVGLGLI-GASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLIPH   80 (165)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             EEEEEeecHH-HHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhhhhhhhh
Confidence            6899999875 99999999999999999987621               23467899999999987322   111  245


Q ss_pred             ccCCcEEEEeeeC
Q 027976          142 LKPGAVVLDVGTC  154 (216)
Q Consensus       142 i~~g~vViDvg~~  154 (216)
                      ++++.+|+|++.-
T Consensus        81 l~~~~iv~~~~s~   93 (165)
T d2f1ka2          81 LSPTAIVTDVASV   93 (165)
T ss_dssp             SCTTCEEEECCSC
T ss_pred             cccccceeecccc
Confidence            7889999999743

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.62  E-value=9.4e-05  Score=58.87  Aligned_cols=92  Identities=18%  Similarity=0.243  Sum_probs=61.6

Q ss_pred             CcHHHHHHHHH----HhCC-CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhc-c
Q 027976           62 CTPKGCIELLI----RSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQIT-S  122 (216)
Q Consensus        62 ~Ta~g~~~~L~----~~~~-~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~-~  122 (216)
                      +|++|+...++    +.+. +|+||+|+|-|.|. ||+.+|..|.+.|++|+++..+..             ...+.+ .
T Consensus         4 ~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~-VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~   82 (201)
T d1c1da1           4 TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGA-VGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST   82 (201)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccc
Confidence            57788776665    4465 69999999999988 599999999999999999876521             223333 3


Q ss_pred             CCCEEEEecCCCCcccCCcccC--CcEEEEeeeCC
Q 027976          123 EADIVIAAAGVANLVRGSWLKP--GAVVLDVGTCP  155 (216)
Q Consensus       123 ~ADIVIsatg~p~~i~~~~i~~--g~vViDvg~~~  155 (216)
                      ++||++-+. .++.|+.+..+.  -.+|+.-+-+|
T Consensus        83 ~~DI~iPcA-~~~~I~~~~a~~i~ak~i~e~AN~p  116 (201)
T d1c1da1          83 PCDVFAPCA-MGGVITTEVARTLDCSVVAGAANNV  116 (201)
T ss_dssp             CCSEEEECS-CSCCBCHHHHHHCCCSEECCSCTTC
T ss_pred             cceeeeccc-ccccccHHHHhhhhhheeeccCCCC
Confidence            689988543 334455544321  23444444333

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.58  E-value=4.7e-05  Score=58.83  Aligned_cols=96  Identities=23%  Similarity=0.243  Sum_probs=68.3

Q ss_pred             ccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------CCH
Q 027976           58 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNP  117 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l  117 (216)
                      .++||.-.-.+..++..++. .|.+|+|+|+|+. |...++++...|+ +|+++.++.                   ++.
T Consensus         7 ~~l~~~~~ta~~a~~~a~~~-~g~~VlI~GaG~v-Gl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~   84 (174)
T d1jqba2           7 VMITDMMTTGFHGAELADIE-MGSSVVVIGIGAV-GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHI   84 (174)
T ss_dssp             HTTTTHHHHHHHHHHHTTCC-TTCCEEEECCSHH-HHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCH
T ss_pred             HHhhhHHHHHHHHHHHhCCC-CCCEEEEEcCCcc-hhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhH
Confidence            35677655556677776654 6899999999875 9999998999998 588775541                   122


Q ss_pred             H----hhc--cCCCEEEEecCCCCccc--CCcccCCcEEEEeeeCC
Q 027976          118 E----QIT--SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       118 ~----~~~--~~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~~  155 (216)
                      .    +..  +.+|++|.++|.+..+.  -+.++++..++-+|...
T Consensus        85 ~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          85 EDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             HHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             HHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecC
Confidence            2    222  23899999999887543  35678888888888654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.52  E-value=9.1e-05  Score=55.89  Aligned_cols=71  Identities=13%  Similarity=0.118  Sum_probs=54.8

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------CCHHhhccCCCEEEEecCCCCccc--CCcccC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITSEADIVIAAAGVANLVR--GSWLKP  144 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------~~l~~~~~~ADIVIsatg~p~~i~--~~~i~~  144 (216)
                      |+.+||.|.+ |.+++..|.+.+.++++++|+.               .+..+.++++|+||-++. |..+.  -+.+++
T Consensus         2 kIg~IG~G~m-G~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl~~l~~   79 (152)
T d2ahra2           2 KIGIIGVGKM-ASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKPLHF   79 (152)
T ss_dssp             EEEEECCSHH-HHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTTSCC
T ss_pred             EEEEEeccHH-HHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHhhhccc
Confidence            6899999986 9999999999999999998762               356788999999999984 43211  123567


Q ss_pred             CcEEEEeeeC
Q 027976          145 GAVVLDVGTC  154 (216)
Q Consensus       145 g~vViDvg~~  154 (216)
                      +.+++++...
T Consensus        80 ~~~iis~~ag   89 (152)
T d2ahra2          80 KQPIISMAAG   89 (152)
T ss_dssp             CSCEEECCTT
T ss_pred             ceeEeccccc
Confidence            8888887644

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00016  Score=54.95  Aligned_cols=95  Identities=16%  Similarity=0.091  Sum_probs=66.3

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHH
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPE  118 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~  118 (216)
                      .++|....+++.|++.++ -.|.+|+|+|+|+ +|..+++++...|+++.++.+..+                    ...
T Consensus        11 pl~Cag~Tay~al~~~~~-~~G~~VlI~GaG~-vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~   88 (168)
T d1uufa2          11 PLLCAGITTYSPLRHWQA-GPGKKVGVVGIGG-LGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMA   88 (168)
T ss_dssp             GGGTHHHHHHHHHHHTTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHhCC-CCCCEEEEeccch-HHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHH
Confidence            356744445666766554 3699999999977 599999888899998777755421                    122


Q ss_pred             hhccCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeCC
Q 027976          119 QITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       119 ~~~~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~~  155 (216)
                      +..+..|++|.++|.+..+  .-++++++-.++-+|...
T Consensus        89 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2          89 AHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             TTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-
T ss_pred             HhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCC
Confidence            3445689999999987643  345677877777787654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=8.5e-05  Score=60.21  Aligned_cols=38  Identities=26%  Similarity=0.266  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   38 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999999999888999999999999999999876

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=0.0003  Score=53.37  Aligned_cols=94  Identities=16%  Similarity=0.259  Sum_probs=64.3

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------C-HH
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------N-PE  118 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~-l~  118 (216)
                      ++|...-.+..|++.++ -.|.+|+|+|+|+ +|..+++++...|++|+++.++..                    + .+
T Consensus         9 l~cag~Ta~~al~~~~~-~~g~~vlI~GaG~-vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~   86 (168)
T d1piwa2           9 LLCGGLTVYSPLVRNGC-GPGKKVGIVGLGG-IGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGE   86 (168)
T ss_dssp             GGTHHHHHHHHHHHTTC-STTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHH
T ss_pred             HHHHHHHHHHHHHHhCc-CCCCEEEEECCCC-cchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHH
Confidence            55655555677777665 4799999999976 599988888889999888866532                    1 22


Q ss_pred             hhccCCCEEEEecCCCCc--cc--CCcccCCcEEEEeeeCC
Q 027976          119 QITSEADIVIAAAGVANL--VR--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       119 ~~~~~ADIVIsatg~p~~--i~--~~~i~~g~vViDvg~~~  155 (216)
                      +..+..|.+|.+++.+..  +.  -+.++++-.++-+|...
T Consensus        87 ~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          87 KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCC
T ss_pred             hhhcccceEEEEecCCccchHHHHHHHhhccceEEEecccc
Confidence            334457888888776542  22  24466776677787653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.0001  Score=59.70  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..|+||+++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~   40 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            46899999999999999999999999999999999876

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=0.0001  Score=59.28  Aligned_cols=57  Identities=26%  Similarity=0.268  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC----------------C---CHHhhccCCCEEEEecCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------K---NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~---~l~~~~~~ADIVIsatg~p  134 (216)
                      |+||+++|.|++.-+|+++|..|+++|++|.++.|+.                +   .+.+...+-|++|+..|.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~   77 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGP   77 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEeccccc
Confidence            7899999999988889999999999999999998762                1   1335566778888887754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.45  E-value=6e-05  Score=59.20  Aligned_cols=53  Identities=23%  Similarity=0.359  Sum_probs=45.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------------CCCHHhhccCCCEEEEecC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------TKNPEQITSEADIVIAAAG  132 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------t~~l~~~~~~ADIVIsatg  132 (216)
                      ++|+|||+|.. |.++|..|++.|.+|++..|+                            +.++.+.+++||+||-|++
T Consensus         8 ~KI~ViGaG~w-GtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP   86 (189)
T d1n1ea2           8 NKAVVFGSGAF-GTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP   86 (189)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC
T ss_pred             ceEEEECCCHH-HHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc
Confidence            57999999876 999999999999899998653                            1357888999999999998


Q ss_pred             CC
Q 027976          133 VA  134 (216)
Q Consensus       133 ~p  134 (216)
                      ..
T Consensus        87 s~   88 (189)
T d1n1ea2          87 TQ   88 (189)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=6.2e-05  Score=57.55  Aligned_cols=94  Identities=11%  Similarity=-0.004  Sum_probs=62.4

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-------------------CCCHHhh
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------TKNPEQI  120 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-------------------t~~l~~~  120 (216)
                      +||.+..+...|.+..---.|++|+|.|+++.+|..+++++...|++|+++.++                   ++++.+.
T Consensus         9 ~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~   88 (179)
T d1qora2           9 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVER   88 (179)
T ss_dssp             HHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHH
Confidence            577777777788665433469999999999988999999999999998888554                   2233332


Q ss_pred             c------cCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976          121 T------SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       121 ~------~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~  153 (216)
                      +      +..|+|+.++|.+.+ -..+.++++-.++-++.
T Consensus        89 v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          89 LKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             HHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeeccc
Confidence            2      235788887775543 23344555444444443

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=0.00016  Score=58.48  Aligned_cols=58  Identities=17%  Similarity=0.322  Sum_probs=47.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHHhhccCCCEEEEecC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITSEADIVIAAAG  132 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------~l~~~~~~ADIVIsatg  132 (216)
                      -+|+||+++|.|+++-+|+++|..|+++|++|.++.|+.+                       ...+....-|++|+..|
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            3689999999999988899999999999999999988632                       12234456799998888


Q ss_pred             C
Q 027976          133 V  133 (216)
Q Consensus       133 ~  133 (216)
                      .
T Consensus        83 ~   83 (237)
T d1uzma1          83 L   83 (237)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=8.9e-05  Score=59.64  Aligned_cols=43  Identities=23%  Similarity=0.277  Sum_probs=38.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHh
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQ  119 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~  119 (216)
                      +|+||.++|.|+++-+|++++..|+++|++|.++.|+.+.+++
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   44 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEA   44 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence            6899999999999999999999999999999999987655443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.38  E-value=5e-05  Score=62.24  Aligned_cols=38  Identities=24%  Similarity=0.168  Sum_probs=35.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|+||+++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~   39 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN   39 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57999999999999888999999999999999999876

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=6.1e-05  Score=57.73  Aligned_cols=95  Identities=13%  Similarity=0.120  Sum_probs=65.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-------------------CCCHHhh
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------TKNPEQI  120 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-------------------t~~l~~~  120 (216)
                      +||.+..+...|.+..---+|++|+|.|+++.+|..++.++...|++|.++.+.                   ++++.+.
T Consensus         6 l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~   85 (183)
T d1pqwa_           6 FGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADE   85 (183)
T ss_dssp             HHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHH
Confidence            456566666666555433468999999986778999999999999997766433                   2344333


Q ss_pred             c------cCCCEEEEecCCCCc-ccCCcccCCcEEEEeeeC
Q 027976          121 T------SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       121 ~------~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~~  154 (216)
                      +      +..|+++.++|.+.+ ..-+.++++..++.+|..
T Consensus        86 v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_          86 ILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKK  126 (183)
T ss_dssp             HHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCG
T ss_pred             HHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccC
Confidence            3      347999999986433 223567787788888744

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.37  E-value=0.00018  Score=54.68  Aligned_cols=56  Identities=25%  Similarity=0.305  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC--------------------------CCHHhhccCCCEEEEec
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT--------------------------KNPEQITSEADIVIAAA  131 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t--------------------------~~l~~~~~~ADIVIsat  131 (216)
                      +-+|+.|||+|. ||..+|+.|+..+ +++.+++.+.                          .+.++.+++||+||.+.
T Consensus         6 k~~KI~IIGaG~-VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGSGM-IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CCCcEEEECCCH-HHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            568999999966 6999999888888 5788875442                          24567889999999999


Q ss_pred             CCCC
Q 027976          132 GVAN  135 (216)
Q Consensus       132 g~p~  135 (216)
                      |.|.
T Consensus        85 g~~~   88 (154)
T d1pzga1          85 GLTK   88 (154)
T ss_dssp             SCSS
T ss_pred             cccc
Confidence            8653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=0.00012  Score=54.83  Aligned_cols=36  Identities=19%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ..++||+|+|||+|.. |..-+..|++.||+|+++..
T Consensus         9 ~~l~gkrvLViGgG~v-a~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEV-GLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             ECCTTCEEEEEEESHH-HHHHHHHHGGGTCEEEEEEE
T ss_pred             eeeCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeC
Confidence            3589999999999885 99999999999999999953

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.30  E-value=0.00015  Score=55.49  Aligned_cols=94  Identities=14%  Similarity=0.135  Sum_probs=62.2

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-----------------C---HHh
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------N---PEQ  119 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~---l~~  119 (216)
                      +||...-+...|++.+. -+|++|+|.|+++.+|..+++++...|++|..+.++.+                 +   ...
T Consensus         9 l~~~~~TA~~al~~~~~-~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~   87 (171)
T d1iz0a2           9 FPVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAK   87 (171)
T ss_dssp             SHHHHHHHHHHHHHTTC-CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCC-CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhh
Confidence            56655656677776543 48999999999777899999999999999777655421                 1   112


Q ss_pred             hccCCCEEEEecCCCCcccCCcccCCcEEEEeeeC
Q 027976          120 ITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       120 ~~~~ADIVIsatg~p~~i~~~~i~~g~vViDvg~~  154 (216)
                      .-+.+|+|++++|..-.-.-+.++++-.++.+|..
T Consensus        88 ~~~g~D~v~d~~G~~~~~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2          88 AWGGLDLVLEVRGKEVEESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             HTTSEEEEEECSCTTHHHHHTTEEEEEEEEEC---
T ss_pred             ccccccccccccchhHHHHHHHHhcCCcEEEEeCC
Confidence            33457999998873211123567777777777753

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.30  E-value=0.00023  Score=60.10  Aligned_cols=76  Identities=16%  Similarity=0.226  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHh-CCC-EEEEEeCCC------------------CCHHhhccCCCEEEEecCCCCc-c
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT------------------KNPEQITSEADIVIAAAGVANL-V  137 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t------------------~~l~~~~~~ADIVIsatg~p~~-i  137 (216)
                      .-+++.|||+|.- ++.-+.+|.. +.. +|.+.+|+.                  .+..+.+++|||||++|++..+ +
T Consensus       124 ~~~~l~iiGaG~Q-A~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~P~~  202 (320)
T d1omoa_         124 NSSVFGFIGCGTQ-AYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKPVV  202 (320)
T ss_dssp             TCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSSCCB
T ss_pred             CccEEEEecCccc-HHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCccccc
Confidence            4578999999875 8877776654 443 699998762                  1345778999999999998776 7


Q ss_pred             cCCcccCCcEEEEeeeCC
Q 027976          138 RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       138 ~~~~i~~g~vViDvg~~~  155 (216)
                      +.+|+++|+.|.=+|.+.
T Consensus       203 ~~~~l~~G~hv~~iGs~~  220 (320)
T d1omoa_         203 KAEWVEEGTHINAIGADG  220 (320)
T ss_dssp             CGGGCCTTCEEEECSCCS
T ss_pred             chhhcCCCCeEeecCCcc
Confidence            899999999999998754

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.30  E-value=7e-05  Score=61.29  Aligned_cols=38  Identities=24%  Similarity=0.144  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   41 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   41 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57999999999999888999999999999999999875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.29  E-value=0.00011  Score=59.92  Aligned_cols=41  Identities=17%  Similarity=0.304  Sum_probs=37.0

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN  116 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~  116 (216)
                      .+++||+++|.|+++-+|+++|..|+++|++|.++.|+.++
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            47899999999999988999999999999999999887543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=6.3e-05  Score=57.54  Aligned_cols=94  Identities=24%  Similarity=0.188  Sum_probs=62.3

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CCHHhh
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQI  120 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~  120 (216)
                      +||...-+...|.+..---+|++|+|.|+++.||..+.+.+...|++|+.+.++.                   .++.+.
T Consensus         9 l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~   88 (174)
T d1yb5a2           9 IGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDK   88 (174)
T ss_dssp             THHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHH
Confidence            5666666666765543334799999999866789999999999999987765431                   233222


Q ss_pred             c------cCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976          121 T------SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       121 ~------~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~  153 (216)
                      +      +..|+++.++|.+.+ -.-+.++++-.++.+|.
T Consensus        89 i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2          89 IKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             HHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCC
T ss_pred             hhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEec
Confidence            2      236888888885432 12245677777777774

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.25  E-value=0.0002  Score=53.66  Aligned_cols=72  Identities=14%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------CHHhhccCCCEEEEecCCCCcc---cCCcccC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITSEADIVIAAAGVANLV---RGSWLKP  144 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~~ADIVIsatg~p~~i---~~~~i~~  144 (216)
                      ||.|||.|.+ |.+++..|+++|.+|+++++...              +..+.++++|+||.+++.....   ..-.-..
T Consensus         2 kIgiIG~G~m-G~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~   80 (152)
T d1i36a2           2 RVGFIGFGEV-AQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (152)
T ss_dssp             EEEEESCSHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             EEEEEcHHHH-HHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHhhcccC
Confidence            6899999886 99999999999999998876532              3567889999999999854321   0000123


Q ss_pred             CcEEEEeeeC
Q 027976          145 GAVVLDVGTC  154 (216)
Q Consensus       145 g~vViDvg~~  154 (216)
                      +.+++|+...
T Consensus        81 ~~~~id~st~   90 (152)
T d1i36a2          81 RGIYVDINNI   90 (152)
T ss_dssp             CSEEEECSCC
T ss_pred             CceeeccCcC
Confidence            6788998754

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.25  E-value=0.00011  Score=60.19  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999999999888999999999999999999876

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=9e-05  Score=60.38  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=35.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|+||.++|.|+++-+|+++|..|+++|++|.++.++
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47999999999999988999999999999999999775

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.23  E-value=0.00015  Score=55.78  Aligned_cols=75  Identities=15%  Similarity=0.177  Sum_probs=57.8

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------------CHHhhccCCCEEEEecCCCCc-
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------NPEQITSEADIVIAAAGVANL-  136 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------~l~~~~~~ADIVIsatg~p~~-  136 (216)
                      .++|-+||.|.+ |.++|..|++.|.+|++++|+.+                      ++.+.+..+|++|........ 
T Consensus         2 ~~nIg~IGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v   80 (176)
T d2pgda2           2 QADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV   80 (176)
T ss_dssp             CBSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred             CCcEEEEeEhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHH
Confidence            468999999886 99999999999999999998642                      234667788999988775542 


Q ss_pred             --ccC---CcccCCcEEEEeeeCC
Q 027976          137 --VRG---SWLKPGAVVLDVGTCP  155 (216)
Q Consensus       137 --i~~---~~i~~g~vViDvg~~~  155 (216)
                        +..   +.+++|.++||++...
T Consensus        81 ~~v~~~l~~~~~~g~iiid~sT~~  104 (176)
T d2pgda2          81 DNFIEKLVPLLDIGDIIIDGGNSE  104 (176)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSCCC
T ss_pred             HHHHHHHHhccccCcEEEecCcch
Confidence              111   3457899999998654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00032  Score=54.94  Aligned_cols=52  Identities=21%  Similarity=0.285  Sum_probs=43.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------------------------------CCH
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------------------------KNP  117 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------------------------------~~l  117 (216)
                      |+|.|||+|-+ |+.+|..++..|++|+++.++.                                           .++
T Consensus         5 kkvaViGaG~m-G~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLM-GAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   83 (192)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             EEEEEECcCHH-HHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence            78999999875 9999999999999999996541                                           245


Q ss_pred             HhhccCCCEEEEecCC
Q 027976          118 EQITSEADIVIAAAGV  133 (216)
Q Consensus       118 ~~~~~~ADIVIsatg~  133 (216)
                      .+.+++||+||-|+.-
T Consensus        84 ~~a~~~ad~ViEav~E   99 (192)
T d1f0ya2          84 ASVVHSTDLVVEAIVE   99 (192)
T ss_dssp             HHHTTSCSEEEECCCS
T ss_pred             Hhhhcccceehhhccc
Confidence            5778999999998764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.21  E-value=0.0004  Score=52.48  Aligned_cols=96  Identities=15%  Similarity=0.124  Sum_probs=67.8

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHH
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPE  118 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~  118 (216)
                      .+||....+...+++.+. -.|.+|+|+|++|.+|..+++++...|+ +|+++.++.                   .+..
T Consensus         8 ~l~c~~~Ta~~al~~~~~-~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~   86 (170)
T d1jvba2           8 PLTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPL   86 (170)
T ss_dssp             GGGTHHHHHHHHHHHTTC-CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHH
Confidence            578877767777877654 4688999999866679998888888885 788885541                   2222


Q ss_pred             hhc------cCCCEEEEecCCCCccc--CCcccCCcEEEEeeeCC
Q 027976          119 QIT------SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       119 ~~~------~~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~~  155 (216)
                      +.+      +..|++|.++|.+..++  -++++++-.++=+|...
T Consensus        87 ~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~  131 (170)
T d1jvba2          87 AEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFG  131 (170)
T ss_dssp             HHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSC
T ss_pred             HHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEecccc
Confidence            221      33799999998776443  35678887777777653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.21  E-value=0.00038  Score=56.60  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+||+|+|.|++.-+|+.+|..|+++|++|.++.|+
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~   38 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999999999888999999999999998777543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.20  E-value=0.00032  Score=57.17  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+||.++|.|+++-+|+++|..|+++|++|.++.++
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN   38 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998888999999999999999999876

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.20  E-value=0.00045  Score=51.86  Aligned_cols=55  Identities=25%  Similarity=0.403  Sum_probs=42.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCC-----------------------CCCHHhhccCCCEEEEecCCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL-----------------------TKNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~-----------------------t~~l~~~~~~ADIVIsatg~p~  135 (216)
                      .||+|||++|.||..+|+.|..++.  ++.+++..                       +.+.++.+++||+||.+.|.|.
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            3799999855679999999999884  57777543                       1245688999999998888653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.19  E-value=0.00041  Score=56.27  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=34.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      |+||.++|.|+++-+|+++|..|+++|++|.++.++.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7999999999988889999999999999999998763

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.19  E-value=0.0002  Score=54.11  Aligned_cols=73  Identities=18%  Similarity=0.203  Sum_probs=52.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCCC----------------CH-HhhccCCCEEEEecCCCC---ccc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK----------------NP-EQITSEADIVIAAAGVAN---LVR  138 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~----------------~l-~~~~~~ADIVIsatg~p~---~i~  138 (216)
                      |++.|||.|.+ |.++|..|.+.|.  +|+.++++.+                +. .....++|+||-+++...   .+.
T Consensus         2 k~I~IIG~G~m-G~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~   80 (171)
T d2g5ca2           2 QNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (171)
T ss_dssp             CEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEEccCHH-HHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhh
Confidence            57999999875 9999999999985  6777766521                11 233457899999998432   121


Q ss_pred             --CCcccCCcEEEEeeeC
Q 027976          139 --GSWLKPGAVVLDVGTC  154 (216)
Q Consensus       139 --~~~i~~g~vViDvg~~  154 (216)
                        .+.++++.+|+|++..
T Consensus        81 ~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          81 KLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHSCTTCEEEECCSC
T ss_pred             hhhccccccccccccccc
Confidence              2446789999999864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.19  E-value=8.2e-05  Score=60.90  Aligned_cols=38  Identities=13%  Similarity=0.106  Sum_probs=35.7

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|+||+++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   41 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            58999999999999989999999999999999999776

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.17  E-value=0.00011  Score=60.52  Aligned_cols=38  Identities=24%  Similarity=0.214  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+||+++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~   58 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRK   58 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            36899999999998888999999999999999999876

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.16  E-value=0.00014  Score=58.74  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=35.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .|+||+++|.|+++-+|+++|..|+++|++|.++.|+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            37999999999999899999999999999999998763

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.15  E-value=0.00026  Score=54.72  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=44.4

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-----------------------------CCCHHhhccCCCEEEEecC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-----------------------------TKNPEQITSEADIVIAAAG  132 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-----------------------------t~~l~~~~~~ADIVIsatg  132 (216)
                      +|.|||+|.. |.++|..|++.|.+|++..|.                             +.++.+.+++||+||.|++
T Consensus         2 kI~ViGaG~~-GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILGAGAM-GSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEESCCHH-HHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            6899999876 999999999999999998552                             1356788999999999998


Q ss_pred             CCC
Q 027976          133 VAN  135 (216)
Q Consensus       133 ~p~  135 (216)
                      ...
T Consensus        81 s~~   83 (180)
T d1txga2          81 TDG   83 (180)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            644

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.14  E-value=0.0002  Score=54.85  Aligned_cols=96  Identities=17%  Similarity=0.139  Sum_probs=63.9

Q ss_pred             ccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCC-------------------CCCH
Q 027976           58 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL-------------------TKNP  117 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~-------------------t~~l  117 (216)
                      ..++|........+.+..---.|.+|+|+|+|+ +|..+++++...|++ |+++.++                   .++.
T Consensus         7 apl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~-iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~   85 (174)
T d1f8fa2           7 GPLGCGIQTGAGACINALKVTPASSFVTWGAGA-VGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDP   85 (174)
T ss_dssp             GGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSH-HHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCH
T ss_pred             HHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCH-HHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCH
Confidence            346786665555654443345799999999976 599999888888885 5555433                   2234


Q ss_pred             Hhhcc-----CCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          118 EQITS-----EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       118 ~~~~~-----~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                      .+.++     .+|++|.++|.+..+  ..+.++++-.++=+|..
T Consensus        86 ~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2          86 VAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             HHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             HHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeec
Confidence            33332     279999999987643  23567787666666654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.13  E-value=0.00029  Score=57.17  Aligned_cols=53  Identities=19%  Similarity=0.163  Sum_probs=43.6

Q ss_pred             CCCcHHHHHHHHHH----h--CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           60 IPCTPKGCIELLIR----S--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~----~--~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      -|.|++|+...++.    .  ..+|+||+|+|-|.|. ||..+|++|.+.|++|+++..+
T Consensus        13 ~~aTg~GV~~~~~~~~~~~~g~~~l~g~~v~IqG~Gn-VG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          13 SPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGN-VAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcchHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEeeccc
Confidence            35688998776653    2  4579999999999987 5999999999999998888554

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.12  E-value=0.0003  Score=51.12  Aligned_cols=53  Identities=26%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------CC-HHh-hccCCCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KN-PEQ-ITSEADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------~~-l~~-~~~~ADIVIsatg~p  134 (216)
                      |+++|+|.|.. |+.++..|.++|.+|+++..+.                    ++ |.+ .+++||.+|.+++..
T Consensus         1 k~~iIiG~G~~-G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           1 KQFAVIGLGRF-GGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC
T ss_pred             CEEEEECCCHH-HHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCch
Confidence            68999999885 9999999999999999996652                    11 223 277888888887753

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00032  Score=54.59  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..+.|+|+|||+|-+ |..+|..|+++|.+|+++.+.
T Consensus        40 ~~~~k~V~IIGaGPA-GL~AA~~la~~G~~Vtl~E~~   75 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPA-GLAFAINAAARGHQVTLFDAH   75 (179)
T ss_dssp             CSSCCEEEEECCSHH-HHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCcEEEEECccHH-HHHHHHHHHhhccceEEEecc
Confidence            357899999999998 999999999999999999765

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00019  Score=58.04  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      |+||.++|.|+++-+|+++|..|+++|++|.++.|+.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            8999999999999999999999999999999998863

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00034  Score=58.64  Aligned_cols=92  Identities=13%  Similarity=0.203  Sum_probs=72.4

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh----CCC-------EEEEEeCC------------------
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL------------------  113 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~------------------  113 (216)
                      +-.|++..|+-.+.+++..++++.|+|.+ |..++.+|..    .|.       ++++++++                  
T Consensus         8 ~lAglinAlki~gk~l~d~kiv~~GAGsA-g~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~   86 (294)
T d1pj3a1           8 ALAGLLAAQKVISKPISEHKILFLGAGEA-ALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPF   86 (294)
T ss_dssp             HHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGG
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEECccHH-HHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHh
Confidence            34678899999999999999999999988 8888888654    332       38888664                  


Q ss_pred             --------CCCHHhhcc--CCCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976          114 --------TKNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  156 (216)
Q Consensus       114 --------t~~l~~~~~--~ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~  156 (216)
                              ..+|.+.++  ++|++|..++.+..+++++++      +.-+|+=++ ||.
T Consensus        87 a~~~~~~~~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLS-NPt  144 (294)
T d1pj3a1          87 THSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALS-NPT  144 (294)
T ss_dssp             CBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             hccccccchhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEcc-CCC
Confidence                    014666665  789999999988889999885      677898888 664

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00055  Score=54.25  Aligned_cols=57  Identities=12%  Similarity=0.161  Sum_probs=47.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC---------------------CCHHhhccCCCEEEEecCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT---------------------KNPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p  134 (216)
                      .++|+|+|.|+.|.+|+.++..|.++|.  +|+++.|+.                     +++.+.++.+|++|.++|..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence            5789999999999999999999999884  799888752                     23567788999999988853

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.08  E-value=0.00026  Score=53.14  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=66.2

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CC---
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KN---  116 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~---  116 (216)
                      .+||+...++..|+..++. .|++|+|.|+|.+ |..++..+...|++|+++.++.                   .+   
T Consensus         8 ~l~~~~~Ta~~al~~~~~~-~g~~vlv~G~G~i-G~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~   85 (168)
T d1rjwa2           8 PIFCAGVTTYKALKVTGAK-PGEWVAIYGIGGL-GHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAK   85 (168)
T ss_dssp             GGGTHHHHHHHHHHHHTCC-TTCEEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC-CCCEEEEeecccc-hhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhh
Confidence            4688888788888888765 6899999999775 9999998999999988885441                   12   


Q ss_pred             -HHhhccCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeCC
Q 027976          117 -PEQITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       117 -l~~~~~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~~  155 (216)
                       +.+..+..|.+|..++.+..+  .-+.++++..++-++.+.
T Consensus        86 ~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~  127 (168)
T d1rjwa2          86 FMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPP  127 (168)
T ss_dssp             HHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCS
T ss_pred             hcccccCCCceEEeecCCHHHHHHHHHHhccCCceEeccccc
Confidence             233345556666566655433  224467777777777654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.07  E-value=0.00066  Score=51.04  Aligned_cols=94  Identities=15%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------CH--
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NP--  117 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l--  117 (216)
                      .+||+...+++.+++.+. -.|.+|+|+|+|+ +|..+++++...|++|.++.++..                   +.  
T Consensus         8 ~l~ca~~Ta~~al~~~~~-~~g~~VlV~GaG~-vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~   85 (166)
T d1llua2           8 PILCAGVTVYKGLKQTNA-RPGQWVAISGIGG-LGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVE   85 (166)
T ss_dssp             GGGTHHHHHHHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCCEEEEeeccc-cHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHH
Confidence            578977777777877654 4689999999977 599999999999999888866521                   11  


Q ss_pred             --HhhccCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          118 --EQITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       118 --~~~~~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                        .+.....|.+|..++.+..+  .-+.++++-.++-+|..
T Consensus        86 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2          86 AIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             HHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             HHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEec
Confidence              12223345555555554432  22456666666667754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.06  E-value=0.00043  Score=56.53  Aligned_cols=37  Identities=22%  Similarity=0.299  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~   40 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS   40 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999998888999999999999999999775

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00047  Score=56.02  Aligned_cols=37  Identities=24%  Similarity=0.186  Sum_probs=34.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   39 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999998888999999999999999999876

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.06  E-value=0.00043  Score=53.08  Aligned_cols=94  Identities=16%  Similarity=0.003  Sum_probs=63.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-------------------CC-HH-
Q 027976           60 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KN-PE-  118 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~-l~-  118 (216)
                      ++|+..-+...|.+..---+|.+|+|.|+++.||..++++....|++|+...++.                   .+ .+ 
T Consensus        10 lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~   89 (182)
T d1v3va2          10 IGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEE   89 (182)
T ss_dssp             TSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHH
T ss_pred             HhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHH
Confidence            4565566666776554334799999999999999999999999999987775441                   11 11 


Q ss_pred             --hh--ccCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976          119 --QI--TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       119 --~~--~~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~  153 (216)
                        +.  -+..|+|++++|.+.+ -.-+.++++-.++-+|.
T Consensus        90 ~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2          90 ALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             HHHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCC
T ss_pred             HHHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecc
Confidence              11  2337888888885432 23455677766776763

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.00032  Score=56.66  Aligned_cols=38  Identities=29%  Similarity=0.465  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEEcCCc--hhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|+||+++|.|+++  =+|+++|..|+++|++|.++.+.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~   43 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA   43 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            579999999999863  14999999999999999888765

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.05  E-value=0.00042  Score=56.49  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+||.++|.|++.-+|++++..|+++|++|.++.++
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   37 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS   37 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999999888999999999999999999775

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00049  Score=51.20  Aligned_cols=70  Identities=16%  Similarity=0.154  Sum_probs=52.6

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------------------CHHhhccCCCEEEEecCCCCc---c
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVANL---V  137 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~ADIVIsatg~p~~---i  137 (216)
                      ||+|||+|. +|..++..|++.|.+|+++.|...                     +..+.+..+|+||.++..+..   +
T Consensus         2 kI~IiGaG~-iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~~~~   80 (167)
T d1ks9a2           2 KITVLGCGA-LGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (167)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             EEEEECcCH-HHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchHHHH
Confidence            799999976 599999999999999999977631                     234667899999999987542   1


Q ss_pred             c--CCcccCCcEEEEee
Q 027976          138 R--GSWLKPGAVVLDVG  152 (216)
Q Consensus       138 ~--~~~i~~g~vViDvg  152 (216)
                      .  ..++.++..|+.+.
T Consensus        81 ~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          81 KSLASTLPVTTPILLIH   97 (167)
T ss_dssp             HHHHTTSCTTSCEEEEC
T ss_pred             HhhccccCcccEEeecc
Confidence            1  23456677777653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.04  E-value=0.00055  Score=52.92  Aligned_cols=95  Identities=18%  Similarity=0.117  Sum_probs=62.5

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEE-cCCchhHHHHHHHHHhCCCEEEEEeCCCCCHH-------------------
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVI-GRSNIVGLPTSLLLQRHHATVSIVHALTKNPE-------------------  118 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~Vi-G~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~-------------------  118 (216)
                      -+||++.-+...|.+..---.|.+++|+ |+++.||..+.+++...|++|..+-+..+...                   
T Consensus         8 ~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~   87 (189)
T d1gu7a2           8 TISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQ   87 (189)
T ss_dssp             TCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHH
T ss_pred             HhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccc
Confidence            3688888888888776544568889998 56666799999988889999766644432111                   


Q ss_pred             -----------hh----ccCCCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976          119 -----------QI----TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       119 -----------~~----~~~ADIVIsatg~p~~-i~~~~i~~g~vViDvg~  153 (216)
                                 +.    -+.+|++++++|.+.+ -.-+.++++-.++.+|.
T Consensus        88 ~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2          88 NNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             HHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCC
T ss_pred             cchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECC
Confidence                       11    1236777777775443 12245677766777764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00015  Score=58.74  Aligned_cols=37  Identities=27%  Similarity=0.198  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~   37 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATS   37 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            5899999999999888999999999999999999876

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.02  E-value=0.00075  Score=54.48  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+||.++|.|+++-+|+++|..|+++|++|.++.++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~   38 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLV   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999999888999999999999999999876

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.02  E-value=0.00066  Score=53.11  Aligned_cols=53  Identities=17%  Similarity=0.181  Sum_probs=44.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC----------------------------------CCCHHhhccCCCEE
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------------TKNPEQITSEADIV  127 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------------t~~l~~~~~~ADIV  127 (216)
                      +|.|||.|- ||.|+|..|+++|.+|+..+.+                                  +.++.+.+++||++
T Consensus         2 kI~ViGlG~-vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           2 RISIFGLGY-VGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             EEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             EEEEECCCH-hHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            689999987 5999999999999999988543                                  12456788999999


Q ss_pred             EEecCCCC
Q 027976          128 IAAAGVAN  135 (216)
Q Consensus       128 Isatg~p~  135 (216)
                      +.+++.|.
T Consensus        81 ~i~VpTP~   88 (202)
T d1mv8a2          81 FICVGTPS   88 (202)
T ss_dssp             EECCCCCB
T ss_pred             EEecCccc
Confidence            99998874

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.00  E-value=0.00053  Score=55.67  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=33.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+||.++|.|+++-+|+++|..|+++|++|.++.++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~   37 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG   37 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            789999999999988999999999999999999765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0014  Score=49.53  Aligned_cols=86  Identities=22%  Similarity=0.376  Sum_probs=61.1

Q ss_pred             HHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHHhh-------
Q 027976           68 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQI-------  120 (216)
Q Consensus        68 ~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~~~-------  120 (216)
                      ++.+++.++ -.|.+|+|+|+|+ +|..+++.+...|+ +|+++.++.                   ++..+.       
T Consensus        16 ~~a~~~~~~-~~gd~VlI~G~G~-iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~   93 (171)
T d1pl8a2          16 IHACRRGGV-TLGHKVLVCGAGP-IGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQ   93 (171)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhCC-CCCCEEEEECCCc-cHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCccccccccccccccccccccc
Confidence            456666665 3688999999976 59999999999998 688886542                   122111       


Q ss_pred             -ccCCCEEEEecCCCCccc--CCcccCCcEEEEeeeCC
Q 027976          121 -TSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       121 -~~~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~~  155 (216)
                       =..+|++|.++|.+..+.  -++++++..++=+|...
T Consensus        94 ~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          94 LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             HTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             CCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence             135899999999876543  35678877777788654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.98  E-value=0.00081  Score=50.48  Aligned_cols=54  Identities=30%  Similarity=0.455  Sum_probs=41.5

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-----------------------------CCHHhhccCCCEEEEe
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------------------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-----------------------------~~l~~~~~~ADIVIsa  130 (216)
                      ||.|||++|.||.++|+.|+.++.  ++.++.+..                             .+..+.+++||+||.+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVit   81 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIIT   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEEe
Confidence            699999856679999999999983  688875431                             1124678899999999


Q ss_pred             cCCCC
Q 027976          131 AGVAN  135 (216)
Q Consensus       131 tg~p~  135 (216)
                      .|.|.
T Consensus        82 AG~~~   86 (145)
T d1hyea1          82 SGVPR   86 (145)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            88654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.98  E-value=0.0012  Score=49.69  Aligned_cols=86  Identities=20%  Similarity=0.288  Sum_probs=61.7

Q ss_pred             HHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------CCHH---hhc--
Q 027976           68 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPE---QIT--  121 (216)
Q Consensus        68 ~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~---~~~--  121 (216)
                      ++.+++.++ -.|.+|+|+|+|+ +|..+++.+...|++|+++.++.                     .+..   +.+  
T Consensus        16 ~~a~~~~~~-~~g~~vlV~G~G~-vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          16 VHACRRAGV-QLGTTVLVIGAGP-IGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHH
T ss_pred             HHHHHHhCC-CCCCEEEEEcccc-cchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhc
Confidence            556666664 4688999999876 59999999999999988886542                     1111   111  


Q ss_pred             ---cCCCEEEEecCCCCccc--CCcccCCcEEEEeeeCC
Q 027976          122 ---SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       122 ---~~ADIVIsatg~p~~i~--~~~i~~g~vViDvg~~~  155 (216)
                         ..+|+||.++|.+..+.  -++++++-.++=+|.++
T Consensus        94 ~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          94 AIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             HSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             ccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCC
Confidence               34899999999876543  35678887777778654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.98  E-value=0.00056  Score=51.40  Aligned_cols=57  Identities=25%  Similarity=0.316  Sum_probs=44.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHHhhccCCCEEEEec
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAA  131 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~ADIVIsat  131 (216)
                      -.++||.|||+|. ||..+|+.|+.++.  ++.+++...                        ..-.+.+++||+||.++
T Consensus         4 ~~~~KI~IiGaG~-vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvita   82 (148)
T d1ldna1           4 NGGARVVVIGAGF-VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICA   82 (148)
T ss_dssp             TTSCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECC
T ss_pred             CCCCeEEEECcCH-HHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEec
Confidence            3578999999976 69999999998873  688886541                        12247899999999998


Q ss_pred             CCCC
Q 027976          132 GVAN  135 (216)
Q Consensus       132 g~p~  135 (216)
                      |.|.
T Consensus        83 g~~~   86 (148)
T d1ldna1          83 GANQ   86 (148)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            8654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.97  E-value=0.0011  Score=49.93  Aligned_cols=55  Identities=22%  Similarity=0.332  Sum_probs=43.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC-------------------------CCHHhhccCCCEEEEecCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      ..||.|||+|. ||..+|.+|..++. ++.+++...                         .+..+.+++||+||.+.|.
T Consensus         3 ~~KI~IIGaG~-VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~   81 (150)
T d1t2da1           3 KAKIVLVGSGM-IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGF   81 (150)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSC
T ss_pred             CCeEEEECCCH-HHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccc
Confidence            46899999976 69999999988884 677776542                         1235789999999999996


Q ss_pred             CC
Q 027976          134 AN  135 (216)
Q Consensus       134 p~  135 (216)
                      |.
T Consensus        82 ~~   83 (150)
T d1t2da1          82 TK   83 (150)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.97  E-value=0.0004  Score=52.23  Aligned_cols=55  Identities=20%  Similarity=0.344  Sum_probs=42.5

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCCC------------------------CCHHhhccCCCEEEEecC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT------------------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t------------------------~~l~~~~~~ADIVIsatg  132 (216)
                      +.+||.|||+|. ||.++|..|+.+|  .++.++++..                        .+ .+.+++||+||.++|
T Consensus         4 ~~~KI~IIGaG~-VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d-~~~~~~adivvitag   81 (146)
T d1ez4a1           4 NHQKVVLVGDGA-VGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE-YSDCKDADLVVITAG   81 (146)
T ss_dssp             TBCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC-GGGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeecc-HHHhccccEEEEecc
Confidence            457999999976 6999999999988  3799987542                        12 367899999999998


Q ss_pred             CCC
Q 027976          133 VAN  135 (216)
Q Consensus       133 ~p~  135 (216)
                      .|.
T Consensus        82 ~~~   84 (146)
T d1ez4a1          82 APQ   84 (146)
T ss_dssp             C--
T ss_pred             ccc
Confidence            754

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.96  E-value=0.00041  Score=56.68  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=32.9

Q ss_pred             CCCCCCCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeC
Q 027976           75 GVEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        75 ~~~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .++|+||+++|.|++   |+ |+++|..|+++||+|.++.+
T Consensus         3 ~~~L~gK~alVTGass~~GI-G~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGY-GWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSH-HHHHHHHHHHTTCEEEEEEE
T ss_pred             CcCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEeC
Confidence            368999999999986   55 99999999999999998865

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00017  Score=58.93  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=34.3

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+||+++|.|++.=+|+++|..|+++|++|.++.|+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~   47 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARS   47 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            899999999999988999999999999999999886

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.92  E-value=0.00043  Score=53.90  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ||+|+|||+|-+ |..+|..|++.|.+|+|+.+.
T Consensus         1 ~KkV~IIGaG~a-GL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVS-GLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcCHH-HHHHHHHHHhCCCCEEEEeCC
Confidence            699999999988 999999999999999999764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.92  E-value=0.00026  Score=58.24  Aligned_cols=37  Identities=14%  Similarity=0.221  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4799999999998888999999999999999999876

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.91  E-value=0.00074  Score=54.55  Aligned_cols=37  Identities=16%  Similarity=0.230  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCc--hhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      |+||+++|.|+++  -+|+++|..|+++|++|+++.|+.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            7999999999753  149999999999999999998864

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.91  E-value=0.00018  Score=58.49  Aligned_cols=40  Identities=18%  Similarity=0.076  Sum_probs=36.3

Q ss_pred             hCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           74 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        74 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +-+.|+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         4 ~~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~   43 (251)
T d2c07a1           4 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRT   43 (251)
T ss_dssp             CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            3467899999999998888999999999999999999876

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.90  E-value=0.0014  Score=50.01  Aligned_cols=52  Identities=17%  Similarity=0.125  Sum_probs=43.3

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ||+-.++.|.+.+...+|..|+|-|++|.||..+.++....||+|+...++.
T Consensus         7 TA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~   58 (167)
T d1tt7a2           7 TAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR   58 (167)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCH
Confidence            5666677788887777888899999988899999999999999987776654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.89  E-value=0.00037  Score=56.30  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+||+++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~   38 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4799999999998878999999999999999999876

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.003  Score=50.69  Aligned_cols=89  Identities=21%  Similarity=0.294  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC----------------------------CC
Q 027976           65 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL----------------------------TK  115 (216)
Q Consensus        65 ~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~----------------------------t~  115 (216)
                      .|++..++-.+.++++.+++++|+|.+ |..++.+|.+.+. +++.++++                            ..
T Consensus        11 Agll~a~~~~g~~l~d~riv~~GAGsA-g~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~   89 (222)
T d1vl6a1          11 AAFLNALKLTEKKIEEVKVVVNGIGAA-GYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSG   89 (222)
T ss_dssp             HHHHHHHHHHTCCTTTCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCS
T ss_pred             HHHHHHHHHhCCChhhcEEEEEChHHH-HHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhc
Confidence            678899999999999999999999988 9999999999886 59999765                            12


Q ss_pred             CHHhhccCCCEEEEecCCCCcccCCccc---CCcEEEEeeeCCc
Q 027976          116 NPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTCPV  156 (216)
Q Consensus       116 ~l~~~~~~ADIVIsatg~p~~i~~~~i~---~g~vViDvg~~~~  156 (216)
                      ++.+.++.+|+++.+.. +..+++|+++   +.-+|+=++ ||.
T Consensus        90 ~l~~~l~g~~~~~g~~~-~~~~~~e~m~~~~~rPIIFpLS-NPt  131 (222)
T d1vl6a1          90 DLETALEGADFFIGVSR-GNILKPEWIKKMSRKPVIFALA-NPV  131 (222)
T ss_dssp             CHHHHHTTCSEEEECSC-SSCSCHHHHTTSCSSCEEEECC-SSS
T ss_pred             chHhhccCcceeccccc-cccccHHHHhhcCCCCEEEecC-CCc
Confidence            56788899998776553 5556665553   355777766 554

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.87  E-value=0.00029  Score=57.57  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+||.++|.|++.-+|+++|..|+++|++|.++.++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            3899999999999888999999999999999999775

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.86  E-value=0.00042  Score=56.52  Aligned_cols=38  Identities=26%  Similarity=0.288  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+||.++|.|+++-+|++++..|+++|++|.++.++
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~   51 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN   51 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46999999999998888999999999999999998655

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.86  E-value=0.001  Score=49.50  Aligned_cols=54  Identities=20%  Similarity=0.360  Sum_probs=40.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCC-------------------------CHHhhccCCCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-------------------------NPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~-------------------------~l~~~~~~ADIVIsatg~p  134 (216)
                      +||.|||+|. ||.++|.+|+.++ +++..++...+                         +-.+.+++||+||.++|.|
T Consensus         2 ~KI~IIGaG~-VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGF-VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCH-HHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeecc
Confidence            6899999966 6999999998888 47777754310                         1246789999999999865


Q ss_pred             C
Q 027976          135 N  135 (216)
Q Consensus       135 ~  135 (216)
                      .
T Consensus        81 ~   81 (142)
T d1uxja1          81 R   81 (142)
T ss_dssp             -
T ss_pred             C
Confidence            3

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00023  Score=57.93  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..|+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   44 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            46899999999999888999999999999999999875

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.00014  Score=54.18  Aligned_cols=71  Identities=11%  Similarity=0.000  Sum_probs=45.1

Q ss_pred             EEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecCCCCc--ccCCcccCCc
Q 027976           83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL--VRGSWLKPGA  146 (216)
Q Consensus        83 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg~p~~--i~~~~i~~g~  146 (216)
                      +-+||.|.+ |++++..|.+.+..+.|++|+.              .+..+.++++|+||.+++-...  +-.+.-+++.
T Consensus         2 IgfIG~G~m-g~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~~~~~   80 (153)
T d2i76a2           2 LNFVGTGTL-TRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLNLGDA   80 (153)
T ss_dssp             CEEESCCHH-HHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHHTTTCCSSC
T ss_pred             EEEEeCcHH-HHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchhhhHHHhhhcccce
Confidence            347999886 9999998866443356888762              2456788999999999974432  3333334688


Q ss_pred             EEEEeeeC
Q 027976          147 VVLDVGTC  154 (216)
Q Consensus       147 vViDvg~~  154 (216)
                      +++|++-.
T Consensus        81 ivi~~s~~   88 (153)
T d2i76a2          81 VLVHCSGF   88 (153)
T ss_dssp             CEEECCSS
T ss_pred             eeeecccc
Confidence            99998754

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.84  E-value=0.00023  Score=57.87  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+||+++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998888999999999999999999876

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.84  E-value=0.00047  Score=55.45  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+||+++|.|+.   |+ |+++|..|+++||+|.++.++
T Consensus         4 l~gK~~lItGaag~~GI-G~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSI-AFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTTCEEEECCCSSTTCH-HHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCEEEEECCCCCCHH-HHHHHHHHHHcCCEEEEEeCC
Confidence            799999999953   44 999999999999999998775

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00033  Score=56.77  Aligned_cols=38  Identities=11%  Similarity=0.190  Sum_probs=35.4

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      -+|.||.++|.|+++-+|+.+|..|+++|++|.++.|+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~   40 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   40 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999999999989999999999999999999886

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.83  E-value=0.00046  Score=55.94  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+|+||.|+|.|+++-+|+++|..|+++|++|.++.++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            36899999999999989999999999999999887544

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.83  E-value=0.00032  Score=56.85  Aligned_cols=37  Identities=24%  Similarity=0.246  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~   39 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL   39 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999998888999999999999999999876

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.80  E-value=0.0016  Score=48.24  Aligned_cols=53  Identities=30%  Similarity=0.451  Sum_probs=41.7

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHHhhccCCCEEEEecCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~ADIVIsatg~p  134 (216)
                      |+.|||+|. ||.+++..|+.++.  ++.+++.+.                         .+..+.+++||+||.+.|.|
T Consensus         2 KI~IIGaG~-VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           2 KITVIGAGN-VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            689999976 69999999999883  688886542                         12357889999999998865


Q ss_pred             C
Q 027976          135 N  135 (216)
Q Consensus       135 ~  135 (216)
                      .
T Consensus        81 ~   81 (142)
T d1guza1          81 R   81 (142)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.80  E-value=0.0021  Score=54.75  Aligned_cols=76  Identities=13%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCchhHHHHHHHH-HhCCC-EEEEEeCCC---------------------CCHHhhccCCCEEEEecCCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLL-QRHHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L-~~~ga-~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      .-+++.|||+|.- ++.-+.++ .-.+. +|.+.+++.                     .++++.++.||||+++|..+.
T Consensus       127 da~~l~iiG~G~Q-A~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s  205 (340)
T d1x7da_         127 NARKMALIGNGAQ-SEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA  205 (340)
T ss_dssp             TCCEEEEECCSTT-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred             CCceEEEEcccHH-HHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCC
Confidence            4578999999976 88655554 33554 699987751                     367899999999999887542


Q ss_pred             ---cccCCcccCCcEEEEeeeCC
Q 027976          136 ---LVRGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       136 ---~i~~~~i~~g~vViDvg~~~  155 (216)
                         +++.+|++||+.|.=+|.+.
T Consensus       206 ~~Pv~~~~~l~pG~hI~aiGs~~  228 (340)
T d1x7da_         206 YATIITPDMLEPGMHLNAVGGDC  228 (340)
T ss_dssp             EEEEECGGGCCTTCEEEECSCCB
T ss_pred             CCcccchhhcCCCCEEeecccch
Confidence               48999999999998888653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.78  E-value=0.00087  Score=50.34  Aligned_cols=54  Identities=24%  Similarity=0.266  Sum_probs=41.2

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHHhhccCCCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~ADIVIsatg~p  134 (216)
                      |||.|||+|. ||..+|..|+.+|.  ++.+++...                        ..-.+.+++||+||.+.|.|
T Consensus         2 kKI~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~   80 (146)
T d1hyha1           2 RKIGIIGLGN-VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI   80 (146)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred             CeEEEECcCH-HHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence            7999999976 69999999988873  687775441                        01246789999999888865


Q ss_pred             C
Q 027976          135 N  135 (216)
Q Consensus       135 ~  135 (216)
                      .
T Consensus        81 ~   81 (146)
T d1hyha1          81 K   81 (146)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.0011  Score=52.77  Aligned_cols=35  Identities=11%  Similarity=0.173  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +||+|+|.|+++-+|++++..|+++|++|.++.+.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~   35 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV   35 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            69999999999888999999999999999988664

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.77  E-value=0.00029  Score=57.74  Aligned_cols=37  Identities=27%  Similarity=0.413  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~   38 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRS   38 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999999989999999999999999999775

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00037  Score=56.73  Aligned_cols=36  Identities=19%  Similarity=0.111  Sum_probs=34.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||.++|.|++.-+|+++|..|+++|++|.++.|+
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~   43 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCART   43 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            899999999999999999999999999999999775

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.74  E-value=0.0019  Score=49.29  Aligned_cols=58  Identities=21%  Similarity=0.416  Sum_probs=45.1

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHHhhccCCCEEEEe
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~ADIVIsa  130 (216)
                      .+..+||.|||+|. ||..+|+.|..+|.  ++.+++.+.                        ..-.+.+++||+||.+
T Consensus        17 ~~~~~KV~IIGaG~-VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVit   95 (160)
T d1i0za1          17 TVPNNKITVVGVGQ-VGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVT   95 (160)
T ss_dssp             CCCSSEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEEC
T ss_pred             cCCCCeEEEECCCH-HHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEe
Confidence            35678999999966 69999999999984  688886541                        1225788999999998


Q ss_pred             cCCCC
Q 027976          131 AGVAN  135 (216)
Q Consensus       131 tg~p~  135 (216)
                      +|.|.
T Consensus        96 Ag~~~  100 (160)
T d1i0za1          96 AGVRQ  100 (160)
T ss_dssp             CSCCC
T ss_pred             cCCcc
Confidence            88654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.73  E-value=0.0026  Score=45.77  Aligned_cols=38  Identities=26%  Similarity=0.408  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+-++|+++|||+|-+ |.-+|..|++.|.+||++++..
T Consensus        26 ~~~~~k~vvViGgG~i-G~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          26 VDPEVNNVVVIGSGYI-GIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCTTCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             hccCCCEEEEECChHH-HHHHHHHhhccceEEEEEEecC
Confidence            3457899999999875 9999999999999999998764

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00039  Score=53.77  Aligned_cols=94  Identities=15%  Similarity=0.063  Sum_probs=56.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCC--CCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCC--------------------CCC
Q 027976           60 IPCTPKGCIELLIRSGVEIM--GKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL--------------------TKN  116 (216)
Q Consensus        60 ~p~Ta~g~~~~L~~~~~~l~--gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~--------------------t~~  116 (216)
                      +|.+..-+...|.+..---.  ++.|+|.|++|.||..+++++...|++ |..+.+.                    +++
T Consensus         9 lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~   88 (187)
T d1vj1a2           9 IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGN   88 (187)
T ss_dssp             TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSC
T ss_pred             hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchh
Confidence            45555556666655532223  478999998777899988888889986 4434322                    223


Q ss_pred             HHhhccC-----CCEEEEecCCCCc-ccCCcccCCcEEEEeee
Q 027976          117 PEQITSE-----ADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       117 l~~~~~~-----ADIVIsatg~p~~-i~~~~i~~g~vViDvg~  153 (216)
                      +.+.+++     +|+|+.++|.+.+ -..+.++++-.++-+|.
T Consensus        89 ~~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2          89 VAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             HHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC--
T ss_pred             HHHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEecc
Confidence            3333333     7888888875433 23455677666666653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00043  Score=57.62  Aligned_cols=36  Identities=22%  Similarity=0.231  Sum_probs=34.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+||.++|.|++.-+|+++|..|+++|++|.++.|+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~   45 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRK   45 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            899999999999989999999999999999999875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.71  E-value=0.00034  Score=56.99  Aligned_cols=36  Identities=33%  Similarity=0.433  Sum_probs=33.9

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRH   38 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            799999999999888999999999999999999775

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.71  E-value=0.0021  Score=44.73  Aligned_cols=36  Identities=14%  Similarity=0.073  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchhHH-HHHHHHHhCCCEEEEEeCCCC
Q 027976           79 MGKNAVVIGRSNIVGL-PTSLLLQRHHATVSIVHALTK  115 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~-~~a~~L~~~ga~Vti~~~~t~  115 (216)
                      +.|++.+||-||+ |. ++|..|.++|++|+-++....
T Consensus         7 ~~~~ihfiGigG~-GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           7 RVQQIHFIGIGGA-GMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TCCEEEEETTTST-THHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hCCEEEEEEECHH-HHHHHHHHHHhCCCEEEEEeCCCC
Confidence            5789999999998 86 669999999999999987643

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.70  E-value=0.0021  Score=49.49  Aligned_cols=52  Identities=21%  Similarity=0.150  Sum_probs=40.7

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ||+-.++.|.+.+..-+|.+|+|-|++|-||..+.+++...|++|+.+.++.
T Consensus        15 TA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~   66 (176)
T d1xa0a2          15 TAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA   66 (176)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             HHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCch
Confidence            4444445566667777899999999988899999998889999977776653

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.69  E-value=0.0016  Score=54.20  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ..|+||.++|.|+++-+|+++|..|+++|++|.++.+
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~   39 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDL   39 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            4689999999999999999999999999999998854

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.68  E-value=0.0039  Score=47.59  Aligned_cols=97  Identities=16%  Similarity=0.192  Sum_probs=62.2

Q ss_pred             ccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC---------------------
Q 027976           58 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------  115 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---------------------  115 (216)
                      +.++|.-.-.+..+.+..---.|.+|+|+|+|+. |...+..+...|+ .|+++.+...                     
T Consensus         7 a~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~i-Gl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~   85 (174)
T d1e3ia2           7 CLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCV-GLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDK   85 (174)
T ss_dssp             GGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSS
T ss_pred             HHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChH-HHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchh
Confidence            3466744444444433333357899999999885 9999999999998 4777755421                     


Q ss_pred             CHHhh-----ccCCCEEEEecCCCCcccC--CcccCC-cEEEEeeeCC
Q 027976          116 NPEQI-----TSEADIVIAAAGVANLVRG--SWLKPG-AVVLDVGTCP  155 (216)
Q Consensus       116 ~l~~~-----~~~ADIVIsatg~p~~i~~--~~i~~g-~vViDvg~~~  155 (216)
                      .....     -..+|++|.++|.+..+..  ++++++ -.++=+|...
T Consensus        86 ~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~  133 (174)
T d1e3ia2          86 PVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV  133 (174)
T ss_dssp             CHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred             hhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCC
Confidence            11111     1347999999998875433  567764 3444567543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.67  E-value=0.00035  Score=56.76  Aligned_cols=36  Identities=33%  Similarity=0.352  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+||.++|.|+++-+|+++|..|+++|++|.++.++
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~   39 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            899999999998888999999999999999999775

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.67  E-value=0.0017  Score=48.54  Aligned_cols=54  Identities=20%  Similarity=0.334  Sum_probs=41.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHHhhccCCCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~ADIVIsatg~p  134 (216)
                      .|+.|||+|. ||..+|+.|+.++.  ++.+++.+.                        .+-.+.+++||+||.+.|.|
T Consensus         2 ~Ki~IIGaG~-VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGA-VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc
Confidence            4799999965 69999999998884  688875441                        11246799999999999975


Q ss_pred             C
Q 027976          135 N  135 (216)
Q Consensus       135 ~  135 (216)
                      .
T Consensus        81 ~   81 (143)
T d1llda1          81 Q   81 (143)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.66  E-value=0.00057  Score=51.06  Aligned_cols=70  Identities=19%  Similarity=0.170  Sum_probs=48.9

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCC--------------CHHhhccCCCEEEEecCCCCc---ccCCccc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK--------------NPEQITSEADIVIAAAGVANL---VRGSWLK  143 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~--------------~l~~~~~~ADIVIsatg~p~~---i~~~~i~  143 (216)
                      |+.+||+|.+ |.+++..|.+.| .+|++++|+.+              +-.+.++++|+||-|+. |..   +-.+...
T Consensus         2 kI~fIG~G~M-G~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavk-P~~~~~v~~~l~~   79 (152)
T d1yqga2           2 NVYFLGGGNM-AAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVK-PQDMEAACKNIRT   79 (152)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSC-HHHHHHHHTTCCC
T ss_pred             EEEEEcCcHH-HHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecC-HHHHHHhHHHHhh
Confidence            6899999886 999999888777 68999988631              11245778999999986 331   2223333


Q ss_pred             CCcEEEEeee
Q 027976          144 PGAVVLDVGT  153 (216)
Q Consensus       144 ~g~vViDvg~  153 (216)
                      .+.+++.+.-
T Consensus        80 ~~~~viS~~a   89 (152)
T d1yqga2          80 NGALVLSVAA   89 (152)
T ss_dssp             TTCEEEECCT
T ss_pred             cccEEeeccc
Confidence            4677877654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.66  E-value=0.00087  Score=50.83  Aligned_cols=95  Identities=14%  Similarity=0.147  Sum_probs=64.3

Q ss_pred             cCCCcHHHHHHHHHHhCCC-CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC------------------CC-H
Q 027976           59 FIPCTPKGCIELLIRSGVE-IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT------------------KN-P  117 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~-l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t------------------~~-l  117 (216)
                      .++|...-..+.|++.+.. -.|.+|+|+|+|+. |...+.++...|+ .|+++.++.                  ++ .
T Consensus        11 ~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~v-G~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~   89 (172)
T d1h2ba2          11 PLADAGITAYRAVKKAARTLYPGAYVAIVGVGGL-GHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPV   89 (172)
T ss_dssp             GGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHH-HHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHH
T ss_pred             HHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChH-HHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHH
Confidence            4678777777888776544 36899999999875 9988888888886 566665441                  11 1


Q ss_pred             H---hhc--cCCCEEEEecCCCCcc--cCCcccCCcEEEEeeeC
Q 027976          118 E---QIT--SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  154 (216)
Q Consensus       118 ~---~~~--~~ADIVIsatg~p~~i--~~~~i~~g~vViDvg~~  154 (216)
                      +   +..  +..|++|.++|.+..+  .-+.++++-.++=+|..
T Consensus        90 ~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2          90 KQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             HHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCS
T ss_pred             HHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCc
Confidence            1   111  2379999999976543  34567777666667753

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.63  E-value=0.00042  Score=56.82  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=33.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+||+++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   37 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN   37 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999999888999999999999999999775

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.60  E-value=0.0022  Score=47.72  Aligned_cols=54  Identities=13%  Similarity=0.342  Sum_probs=39.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-----------------------CCHHhhccCCCEEEEecCCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-----------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      +||.|||+|. ||..+++.|+.++.  ++.+++...                       ....+.+++||+||.+.|.+.
T Consensus         2 ~KI~IIGaG~-VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~   80 (142)
T d1y6ja1           2 SKVAIIGAGF-VGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   80 (142)
T ss_dssp             CCEEEECCSH-HHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CeEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEeccccc
Confidence            4799999965 69999999999884  688886442                       112467889999998888653

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00012  Score=52.03  Aligned_cols=39  Identities=13%  Similarity=0.061  Sum_probs=29.7

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCcc
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGF   42 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~   42 (216)
                      +++.++..++.|++|++|+|  ....++++.+++ .+.+.++
T Consensus        48 ~~~~l~~~~~~G~nVT~P~K--~~~~~~~d~~~~~a~~igAv   87 (102)
T d1vi2a2          48 AIEGLKALKMRGTGVSMPNK--QLACEYVDELTPAAKLVGAI   87 (102)
T ss_dssp             HHHHHHHTTCCEEEECTTST--TGGGGGCSEECHHHHHHTCC
T ss_pred             HHHHhhhhccchhhhhhHHH--HHHHHhcccCCHHHHhhCcE
Confidence            46788889999999999999  444666666766 6666655

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.0015  Score=48.43  Aligned_cols=53  Identities=23%  Similarity=0.279  Sum_probs=40.9

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-----------------------CCHHhhccCCCEEEEecCCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-----------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      |+.|||+|. ||.+++..|+.++.  ++.+++.+.                       ....+.+++||+||.++|.|.
T Consensus         2 KI~IIGaG~-VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~   79 (140)
T d1a5za1           2 KIGIVGLGR-VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQ   79 (140)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccccc
Confidence            789999976 69999998888873  688875441                       123567999999999998754

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0016  Score=50.14  Aligned_cols=52  Identities=29%  Similarity=0.274  Sum_probs=42.1

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ||+-.+..|++.+...++.+++|.|++|.||..+.+++...|++|+.+.++.
T Consensus        15 TA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~   66 (177)
T d1o89a2          15 TAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE   66 (177)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             HHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecch
Confidence            4555556677777777788999999999999999999999999987776654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00061  Score=55.15  Aligned_cols=36  Identities=28%  Similarity=0.260  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   36 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN   36 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            479999999998888999999999999999999775

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.58  E-value=0.0028  Score=52.58  Aligned_cols=56  Identities=20%  Similarity=0.092  Sum_probs=45.3

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC-----------------------------CCHHhhccCCCEEE
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------------KNPEQITSEADIVI  128 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------------------~~l~~~~~~ADIVI  128 (216)
                      -+||+|+|.|++|.+|..++..|+++|++|..+.|+.                             ..+.+.++.+|.|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            4699999999999999999999999999998775531                             12446788899999


Q ss_pred             EecCC
Q 027976          129 AAAGV  133 (216)
Q Consensus       129 satg~  133 (216)
                      .....
T Consensus        89 ~~a~~   93 (342)
T d1y1pa1          89 HIASV   93 (342)
T ss_dssp             ECCCC
T ss_pred             hhccc
Confidence            66654

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=96.57  E-value=0.001  Score=56.01  Aligned_cols=91  Identities=8%  Similarity=0.119  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh----CCC-------EEEEEeCC-------------------
Q 027976           64 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL-------------------  113 (216)
Q Consensus        64 a~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~-------------------  113 (216)
                      -.|++..|+-.+.+++..++++.|+|.+ |.+++.+|..    .|.       ++++++++                   
T Consensus         9 lAglinAlki~gk~l~d~kivi~GAGaA-g~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~   87 (308)
T d1o0sa1           9 VAGLLTCTRVTKKLVSQEKYLFFGAGAA-STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAK   87 (308)
T ss_dssp             HHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCB
T ss_pred             HHHHHHHHHHhCCCHHHcEEEEECcCHH-HHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHH
Confidence            3678889999999999999999999988 9888887654    332       38999764                   


Q ss_pred             ----CCCHHhhccC--CCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976          114 ----TKNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  156 (216)
Q Consensus       114 ----t~~l~~~~~~--ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~  156 (216)
                          ..++.+.++.  -+++|-+.+.++.+++++++      +.-+|+=++ ||.
T Consensus        88 ~~~~~~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  141 (308)
T d1o0sa1          88 DMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALS-NPT  141 (308)
T ss_dssp             SSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             hcccCCcHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEcc-CCC
Confidence                0134444443  47899999988889999885      677888888 664

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.56  E-value=0.0007  Score=52.55  Aligned_cols=32  Identities=16%  Similarity=0.148  Sum_probs=28.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+|.|||+|-+ |+.+|..++..|.+|++++++
T Consensus         5 ~~vaViGaG~m-G~~iA~~~a~~G~~V~l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIM-GGGIAYQSASKGTPILMKDIN   36 (186)
T ss_dssp             SSEEEECCHHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEECC
Confidence            67999999765 999999999999999999765

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.55  E-value=0.00063  Score=55.07  Aligned_cols=36  Identities=25%  Similarity=0.285  Sum_probs=33.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   39 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            899999999998888999999999999999999775

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=96.53  E-value=0.0014  Score=54.92  Aligned_cols=92  Identities=15%  Similarity=0.243  Sum_probs=70.2

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhC----C-------CEEEEEeCC------------------
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----H-------ATVSIVHAL------------------  113 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----g-------a~Vti~~~~------------------  113 (216)
                      |-.|++..++-.+.+|+..++++.|+|-+ |..++.+|...    |       -++++++++                  
T Consensus         8 ~lAglinAlki~gk~l~d~kiV~~GAGsA-g~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a   86 (298)
T d1gq2a1           8 AVAGLLAALRITKNRLSDHTVLFQGAGEA-ALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFA   86 (298)
T ss_dssp             HHHHHHHHHHHHTSCGGGCCEEEECCSHH-HHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGC
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEECccHH-HHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHH
Confidence            34678999999999999999999999987 98888887532    2       258999765                  


Q ss_pred             -----CCCHHhhccC--CCEEEEecCCCCcccCCccc------CCcEEEEeeeCCc
Q 027976          114 -----TKNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  156 (216)
Q Consensus       114 -----t~~l~~~~~~--ADIVIsatg~p~~i~~~~i~------~g~vViDvg~~~~  156 (216)
                           ..++.+.++.  .+++|.+++.+..+++++++      +.-+|+=++ ||.
T Consensus        87 ~~~~~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLS-NPt  141 (298)
T d1gq2a1          87 HEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALS-NPT  141 (298)
T ss_dssp             BSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HHhhhhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEcc-CCC
Confidence                 0134444443  68999999989889998875      567888888 654

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.50  E-value=0.0037  Score=47.28  Aligned_cols=55  Identities=20%  Similarity=0.284  Sum_probs=47.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHHhhccCCCEEEEec
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAAA  131 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~~~ADIVIsat  131 (216)
                      +++|++|+++|-+..|.++++.+|...|+++++|...                         +.++.+.++.||+|.+..
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            4799999999999999999999999999999999543                         236678999999998654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.48  E-value=0.0011  Score=50.17  Aligned_cols=34  Identities=12%  Similarity=0.246  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~  113 (216)
                      .+|||+|||+|-+ |..+|..|+++|++ |+++.+.
T Consensus         3 ~~~kVaIIGaGpa-Gl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPA-SISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHH-HHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHH-HHHHHHHHHHCCCCeEEEEEec
Confidence            3799999999987 99999999999985 9999765

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.48  E-value=0.0023  Score=51.55  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~   35 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG   35 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            48889999999888999999999999999999776

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.45  E-value=0.0048  Score=42.38  Aligned_cols=45  Identities=13%  Similarity=0.082  Sum_probs=35.9

Q ss_pred             CeEEEEcCCchhHH-HHHHHHHhCCCEEEEEeCCCCCHHhhccCCCE
Q 027976           81 KNAVVIGRSNIVGL-PTSLLLQRHHATVSIVHALTKNPEQITSEADI  126 (216)
Q Consensus        81 k~v~ViG~gg~vg~-~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADI  126 (216)
                      .++-+||-||+ |+ ++|..|.++|+.|+-+++......+.+++..+
T Consensus         2 ~~ihfiGIgG~-GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi   47 (89)
T d1j6ua1           2 MKIHFVGIGGI-GMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGI   47 (89)
T ss_dssp             CEEEEETTTSH-HHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTC
T ss_pred             cEEEEEeECHH-HHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCC
Confidence            57899999998 88 88999999999999998875444445555554

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.0027  Score=48.27  Aligned_cols=58  Identities=19%  Similarity=0.322  Sum_probs=44.4

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHHhhccCCCEEEEe
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAA  130 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~ADIVIsa  130 (216)
                      .++..||.|||+|. ||..+|++|..++.  ++.+++.+.                        ..-.+.+++||+||.+
T Consensus        16 ~~~~~KI~IIGaG~-VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvit   94 (159)
T d2ldxa1          16 KLSRCKITVVGVGD-VGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIIT   94 (159)
T ss_dssp             CCCCCEEEEECCSH-HHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEEC
T ss_pred             cCCCCeEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEe
Confidence            35667899999976 69999999999983  688886541                        0124778999999999


Q ss_pred             cCCCC
Q 027976          131 AGVAN  135 (216)
Q Consensus       131 tg~p~  135 (216)
                      .|.|.
T Consensus        95 ag~~~   99 (159)
T d2ldxa1          95 AGARM   99 (159)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            88754

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0029  Score=51.90  Aligned_cols=52  Identities=21%  Similarity=0.229  Sum_probs=41.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------CCHHhhccCCCEEEEecC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg  132 (216)
                      |+|+|.|++|.+|+.++..|+++|.+|+.+.+..                     +.+.....+.|+||...+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa   74 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLAS   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcc
Confidence            7999999999999999999999999998885321                     123345567899997655

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.42  E-value=0.0025  Score=50.48  Aligned_cols=53  Identities=13%  Similarity=0.202  Sum_probs=43.2

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC------HHhhcc--CCCEEEEecCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN------PEQITS--EADIVIAAAGVA  134 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~------l~~~~~--~ADIVIsatg~p  134 (216)
                      ||+|+|++|.+|+.++..|.++|.+|+.++|..-+      +.+.++  +.|+||.+.+..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vih~a~~~   63 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHT   63 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCCHHHHHHHHHHcCCCEEEeecccc
Confidence            69999999999999999999999999988876532      344554  569999988754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=96.41  E-value=0.0017  Score=53.49  Aligned_cols=37  Identities=32%  Similarity=0.223  Sum_probs=34.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ++||+|+|.|++|.+|..++..|+++|++|..+.|..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            5799999999999999999999999999999997753

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.38  E-value=0.0018  Score=50.21  Aligned_cols=34  Identities=35%  Similarity=0.495  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .-|+|+|||+|-+ |..+|..|+++|.+|+++.+.
T Consensus         5 ~~~kVvVIGaGia-Gl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVI-GLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEECccHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            3578999999876 999999999999999999764

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0036  Score=46.76  Aligned_cols=54  Identities=24%  Similarity=0.393  Sum_probs=39.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHh-CC--CEEEEEeCCC-----------------------CCHHhhccCCCEEEEecCCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQR-HH--ATVSIVHALT-----------------------KNPEQITSEADIVIAAAGVAN  135 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~-~g--a~Vti~~~~t-----------------------~~l~~~~~~ADIVIsatg~p~  135 (216)
                      ||.|||++|.||..+|.+|.. .+  .++.+++...                       .+..+.+++||+||.+.|.|.
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~~   81 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVRR   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCCC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCccC
Confidence            789999755679999998753 34  4677775431                       123467899999999999753

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.34  E-value=0.00026  Score=50.25  Aligned_cols=39  Identities=8%  Similarity=0.070  Sum_probs=31.6

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCcc
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGF   42 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~   42 (216)
                      +++.+|..++.|++|++|||+..  .++++.+++ .+.+.++
T Consensus        48 ~~~~~~~~~~~G~nVT~P~K~~~--~~~~d~~s~~a~~igAv   87 (102)
T d1npya2          48 AIKGVRALGIRGCAVSMPFKETC--MPFLDEIHPSAQAIESV   87 (102)
T ss_dssp             HHHHHHHHTCCEEEECTTCTTTT--GGGCSEECHHHHTTTCC
T ss_pred             HHHHHhccccceeEEehhHHHHH--HHHhhhCChhhhhcCcE
Confidence            46788899999999999999444  777888888 7777666

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0027  Score=50.60  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCc--hhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      |+||+++|.|+++  -+|+++|..|+++|++|.++.++.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            7999999999864  249999999999999999998764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.31  E-value=0.0049  Score=46.46  Aligned_cols=96  Identities=17%  Similarity=0.162  Sum_probs=61.2

Q ss_pred             ccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC---------------------C
Q 027976           58 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT---------------------K  115 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t---------------------~  115 (216)
                      ..++|...-.+..+.+..---.|.+|+|+|+|+. |..++.+++..|+ +|.++.++.                     +
T Consensus         7 a~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~-G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~   85 (176)
T d2jhfa2           7 CLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGV-GLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKK   85 (176)
T ss_dssp             GGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSS
T ss_pred             hHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCc-HHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchh
Confidence            3567876666666655444457999999999995 8888888888886 677775432                     1


Q ss_pred             CHHhh-----ccCCCEEEEecCCCCccc--CCcccCC-cEEEEeeeC
Q 027976          116 NPEQI-----TSEADIVIAAAGVANLVR--GSWLKPG-AVVLDVGTC  154 (216)
Q Consensus       116 ~l~~~-----~~~ADIVIsatg~p~~i~--~~~i~~g-~vViDvg~~  154 (216)
                      ...+.     -..+|++|.++|.+..+.  .++++.+ .+++=.+..
T Consensus        86 ~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~  132 (176)
T d2jhfa2          86 PIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP  132 (176)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCC
T ss_pred             HHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCC
Confidence            12111     134799999999876432  2445554 344434443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.31  E-value=0.004  Score=46.27  Aligned_cols=52  Identities=15%  Similarity=0.310  Sum_probs=40.5

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC--------------------------CCHHhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t--------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      |+.|||+|. ||.++|..|+.++.  ++.+++.+.                          .+ .+.+++||+||.+.|.
T Consensus         2 KI~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~   79 (142)
T d1ojua1           2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (142)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEeccc
Confidence            789999966 69999999988873  587775431                          13 4789999999999886


Q ss_pred             CC
Q 027976          134 AN  135 (216)
Q Consensus       134 p~  135 (216)
                      |.
T Consensus        80 ~~   81 (142)
T d1ojua1          80 AR   81 (142)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0036  Score=41.93  Aligned_cols=53  Identities=28%  Similarity=0.270  Sum_probs=40.8

Q ss_pred             cHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC
Q 027976           63 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  115 (216)
Q Consensus        63 Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~  115 (216)
                      |++-++..+.+.+..-+|.+++|.|+++.||..+.+++...|++|+.+.++++
T Consensus        15 TA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~   67 (77)
T d1o8ca2          15 TAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (77)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             HHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence            44444445556666668999999999999999999988999999887766543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.30  E-value=0.0043  Score=51.49  Aligned_cols=56  Identities=14%  Similarity=0.052  Sum_probs=45.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC---------------------CCHHhhccCCCEEEEecCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      -++.+|+|.|++|.+|+.++..|.++|.+|+++.+..                     .++.+.++..|.||...+.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~   89 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD   89 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecccc
Confidence            3788999999999999999999999999999986431                     1234567789999977753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.28  E-value=0.00099  Score=49.51  Aligned_cols=32  Identities=16%  Similarity=0.212  Sum_probs=28.1

Q ss_pred             eEEEE-cCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           82 NAVVI-GRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        82 ~v~Vi-G~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ||.|+ |+|+ +|+++|..|++.|++|++..|+.
T Consensus         2 ki~vigGaG~-iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGN-LGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcH-HHHHHHHHHHHCCCEEEEEECCH
Confidence            57888 6676 59999999999999999999874

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0021  Score=48.26  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=50.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhC-C---CEEEEEeCCCC---------------C--HHhhccCCCEEEEecCCCC--cc
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRH-H---ATVSIVHALTK---------------N--PEQITSEADIVIAAAGVAN--LV  137 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~-g---a~Vti~~~~t~---------------~--l~~~~~~ADIVIsatg~p~--~i  137 (216)
                      |+|.|||+.|.||+-+...|+++ .   .+++.+.+.+.               +  -.+..++.|+++.++|...  .+
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~~   81 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEI   81 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHHh
Confidence            58999999999999888755543 3   35665544320               0  1235688999999997532  13


Q ss_pred             cCCcccCC--cEEEEeeeCCc
Q 027976          138 RGSWLKPG--AVVLDVGTCPV  156 (216)
Q Consensus       138 ~~~~i~~g--~vViDvg~~~~  156 (216)
                      -+...+.|  .+|||.+...+
T Consensus        82 ~~~~~~~g~~~~VID~Ss~fR  102 (146)
T d1t4ba1          82 YPKLRESGWQGYWIDAASSLR  102 (146)
T ss_dssp             HHHHHHTTCCCEEEECSSTTT
T ss_pred             hHHHHhcCCCeecccCCcccc
Confidence            33444555  68999987765

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.27  E-value=0.0029  Score=47.41  Aligned_cols=55  Identities=11%  Similarity=0.173  Sum_probs=40.2

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-------EEEEEeCC--------------------------CCCHHhhccCCCEE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA-------TVSIVHAL--------------------------TKNPEQITSEADIV  127 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga-------~Vti~~~~--------------------------t~~l~~~~~~ADIV  127 (216)
                      -||+|+||+|.||..++..|+..+.       .+...+..                          ..+.++.++++|+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            3899999877789999999876542       23333221                          13567899999999


Q ss_pred             EEecCCCC
Q 027976          128 IAAAGVAN  135 (216)
Q Consensus       128 Isatg~p~  135 (216)
                      |.+.|.|.
T Consensus        84 Vitag~~~   91 (154)
T d5mdha1          84 ILVGSMPR   91 (154)
T ss_dssp             EECCSCCC
T ss_pred             EEecccCC
Confidence            99998764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.26  E-value=0.0018  Score=49.34  Aligned_cols=53  Identities=11%  Similarity=0.066  Sum_probs=40.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEE--EeCCC--------------------CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSI--VHALT--------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti--~~~~t--------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      ++|+|.|++|.+|+.++..|+++|.+|++  ..|+.                    .++.+.++.+|.||...+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence            68999999999999999999999975444  34431                    1245678889999977664

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.00021  Score=50.57  Aligned_cols=40  Identities=3%  Similarity=-0.183  Sum_probs=30.1

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH   43 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~   43 (216)
                      .++.++..++.|++|++|+|  ....++++.+++ .+.+.+++
T Consensus        46 ~~~~l~~~~~~G~nVT~P~K--~~~~~~~d~~~~~a~~igAvN   86 (101)
T d1nyta2          46 TLNAFFSAGGKGANVTVPFK--EEAFARADELTERAALAGAVN   86 (101)
T ss_dssp             HHHHHHHTTCCEEEECTTCH--HHHHHHCSEECHHHHHHTCCS
T ss_pred             HHHHhhhccchhheeehHHH--HHHHHHhccCChHHHHhCcEE
Confidence            35778889999999999999  444566666666 67776664

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.0027  Score=47.65  Aligned_cols=55  Identities=13%  Similarity=0.238  Sum_probs=39.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-E------EEEEeCC--------------------------CCCHHhhccCCCEE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA-T------VSIVHAL--------------------------TKNPEQITSEADIV  127 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga-~------Vti~~~~--------------------------t~~l~~~~~~ADIV  127 (216)
                      -||+|+|++|.||..++..|+..+. .      ..+....                          +.+.++.+++||+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            3899999977789999999987652 1      2222111                          13567899999999


Q ss_pred             EEecCCCC
Q 027976          128 IAAAGVAN  135 (216)
Q Consensus       128 Isatg~p~  135 (216)
                      |.+.|.|.
T Consensus        85 iitaG~~~   92 (154)
T d1y7ta1          85 LLVGAAPR   92 (154)
T ss_dssp             EECCCCCC
T ss_pred             EeecCcCC
Confidence            99998653

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.20  E-value=0.0012  Score=49.38  Aligned_cols=77  Identities=17%  Similarity=0.147  Sum_probs=54.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC---CEEEEEeCCCC---------------C-HHhhccCCCEEEEecCCCC--cccC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALTK---------------N-PEQITSEADIVIAAAGVAN--LVRG  139 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t~---------------~-l~~~~~~ADIVIsatg~p~--~i~~  139 (216)
                      -+|.|+|++|.+|+-+.++|.+++   .++..+.+.+.               + -.+...++|+++.+++...  .+-+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~~   82 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAE   82 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhcc
Confidence            379999999999999999997654   45665544321               1 1245677999999987432  1334


Q ss_pred             CcccCCcEEEEeeeCCcc
Q 027976          140 SWLKPGAVVLDVGTCPVD  157 (216)
Q Consensus       140 ~~i~~g~vViDvg~~~~~  157 (216)
                      ...+.|..|||.+...+.
T Consensus        83 ~~~~~g~~VID~Ss~fR~  100 (144)
T d2hjsa1          83 RARAAGCSVIDLSGALEP  100 (144)
T ss_dssp             HHHHTTCEEEETTCTTTT
T ss_pred             ccccCCceEEeechhhcc
Confidence            456789999999877653

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.19  E-value=0.0011  Score=49.90  Aligned_cols=78  Identities=21%  Similarity=0.267  Sum_probs=55.3

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC---EEEEEeCCC----------------CCHHhhccCCCEEEEecCCCCc--cc
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT----------------KNPEQITSEADIVIAAAGVANL--VR  138 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t----------------~~l~~~~~~ADIVIsatg~p~~--i~  138 (216)
                      |-||.|+|++|.+|.-+.++|.++..   ++..+.+..                ........+.|+++.+++....  .-
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~   80 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYA   80 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHH
Confidence            56899999999999999999998853   355443321                1123456678999998874321  23


Q ss_pred             CCcccCCcEEEEeeeCCcc
Q 027976          139 GSWLKPGAVVLDVGTCPVD  157 (216)
Q Consensus       139 ~~~i~~g~vViDvg~~~~~  157 (216)
                      ++..+.+..|||.+...+-
T Consensus        81 ~~~~~~~~~VIDlSsdfR~   99 (154)
T d2gz1a1          81 PYAVKAGVVVVDNTSYFRQ   99 (154)
T ss_dssp             HHHHHTTCEEEECSSTTTT
T ss_pred             hhhccccceehhcChhhhc
Confidence            3455779999999887754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.12  E-value=0.0044  Score=46.47  Aligned_cols=87  Identities=14%  Similarity=0.132  Sum_probs=56.9

Q ss_pred             ccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCC---------------------C
Q 027976           58 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT---------------------K  115 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t---------------------~  115 (216)
                      ..++|+..-.+..+.+..---.|.+|+|.|+|+. |...+..+...|+. |+++.+..                     +
T Consensus         7 a~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGv-G~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~   85 (176)
T d2fzwa2           7 CLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGV-GLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSK   85 (176)
T ss_dssp             GGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSS
T ss_pred             hHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhH-HHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhh
Confidence            3577876666666655433357999999999985 98888888888974 66564431                     1


Q ss_pred             CHHhhc-----cCCCEEEEecCCCCcc--cCCcccCC
Q 027976          116 NPEQIT-----SEADIVIAAAGVANLV--RGSWLKPG  145 (216)
Q Consensus       116 ~l~~~~-----~~ADIVIsatg~p~~i--~~~~i~~g  145 (216)
                      +..+.+     ..+|++|.++|.+..+  -.+++++|
T Consensus        86 ~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g  122 (176)
T d2fzwa2          86 PIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG  122 (176)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT
T ss_pred             HHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC
Confidence            122221     3479999999976643  22445565

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.08  E-value=0.0021  Score=50.44  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +|+++|.|+++-+|+++|..|+++|++|.++.++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~   35 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRR   35 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58999999988889999999999999999998764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.06  E-value=0.0059  Score=48.60  Aligned_cols=34  Identities=6%  Similarity=0.070  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      -+||+|+|++|.+|+.++..|+++|.+|+++.|.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~   36 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP   36 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3569999999999999999999999999998775

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.06  E-value=0.0044  Score=44.76  Aligned_cols=53  Identities=17%  Similarity=0.270  Sum_probs=40.8

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC----------------------CHHh-hccCCCEEEEecCCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------NPEQ-ITSEADIVIAAAGVAN  135 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------~l~~-~~~~ADIVIsatg~p~  135 (216)
                      +|+|+|.|.. |+.++..|.++|.+|+++..+.+                      .|.+ .+++||.++.+++...
T Consensus         2 ~IvI~G~G~~-G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~   77 (132)
T d1lssa_           2 YIIIAGIGRV-GYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE   77 (132)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH
Confidence            6999999875 99999999999999999966421                      1222 3678888888887643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.01  E-value=0.0084  Score=46.04  Aligned_cols=57  Identities=11%  Similarity=0.135  Sum_probs=41.8

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCC---C----EEEEEeCC--------------------------CCCHHhhccCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHH---A----TVSIVHAL--------------------------TKNPEQITSEAD  125 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~g---a----~Vti~~~~--------------------------t~~l~~~~~~AD  125 (216)
                      +-.+|+|+||+|.+|.+++..|++..   .    .+.+.+..                          +.+..+.++++|
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD  102 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  102 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence            45589999997778999999988643   1    34444322                          235678999999


Q ss_pred             EEEEecCCCC
Q 027976          126 IVIAAAGVAN  135 (216)
Q Consensus       126 IVIsatg~p~  135 (216)
                      +||.+.|.|.
T Consensus       103 vVvi~ag~~r  112 (175)
T d7mdha1         103 WALLIGAKPR  112 (175)
T ss_dssp             EEEECCCCCC
T ss_pred             eEEEeeccCC
Confidence            9998888654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=96.00  E-value=0.0056  Score=49.46  Aligned_cols=49  Identities=27%  Similarity=0.211  Sum_probs=39.7

Q ss_pred             CcHHHHHHHH----HHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEE-EEe
Q 027976           62 CTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVH  111 (216)
Q Consensus        62 ~Ta~g~~~~L----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~  111 (216)
                      +|++|+...+    ++.+.+++||+|+|=|.|. ||..+|++|.+.|++|+ +..
T Consensus         9 ATg~Gv~~~~~~~~~~~~~~l~g~~v~IqGfGn-VG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1           9 ATGFGVAVATREMAKKLWGGIEGKTVAIQGMGN-VGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSH-HHHHHHHHHHTTTCEEEEEEC
T ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEeec
Confidence            5777766555    4566799999999999987 59999999999999954 443

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.98  E-value=0.00044  Score=49.66  Aligned_cols=39  Identities=18%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCcc
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGF   42 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~   42 (216)
                      +++.+|..++.|++|++|+|  ....++++.+++ .+.+.++
T Consensus        56 ~~~~~~~~~~~G~nVT~P~K--~~~~~~~d~~s~~a~~igav   95 (110)
T d1nvta2          56 VIDGAKALGIVGFNVTIPHK--IEIMKYLDEIDKDAQLIGAV   95 (110)
T ss_dssp             HHHHHHHHTCCEEEECTTST--TGGGGGCSEECHHHHHHTCC
T ss_pred             HHHhhcccCcchhheehHHH--HHHHHHhccCCHHHHHhCcE
Confidence            46778888999999999999  334667777777 6666666

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.96  E-value=0.0045  Score=49.77  Aligned_cols=33  Identities=27%  Similarity=0.306  Sum_probs=28.9

Q ss_pred             Ce-EEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KN-AVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~-v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      || ++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~   34 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN   34 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            45 5778998878999999999999999999876

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0043  Score=48.36  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +-++|+|||+|-+ |..+|..|+++|.+|+|+...
T Consensus         4 ~~~kViVIGaG~a-GL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGSGVS-GLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCCEEEEECCBHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECCCHH-HHHHHHHHHhCCCCEEEEeCC
Confidence            4568999999988 999999999999999999764

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.94  E-value=0.0066  Score=46.77  Aligned_cols=72  Identities=26%  Similarity=0.419  Sum_probs=50.7

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC---------------------CCHHhhccCCCEEEEecCCCCc---
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT---------------------KNPEQITSEADIVIAAAGVANL---  136 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t---------------------~~l~~~~~~ADIVIsatg~p~~---  136 (216)
                      ||.|+|++|.+|+-+.++|.++- .++..+.+++                     .+..+..+++|+++.|++....   
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~~~   82 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASYDL   82 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHHHH
Confidence            79999999999999999998865 4554443321                     1233445679999999986432   


Q ss_pred             ccCCcccCCcEEEEeeeCCc
Q 027976          137 VRGSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       137 i~~~~i~~g~vViDvg~~~~  156 (216)
                      +..   ..+..|||++-..+
T Consensus        83 ~~~---~~~~~VIDlSadfR   99 (176)
T d1vkna1          83 VRE---LKGVKIIDLGADFR   99 (176)
T ss_dssp             HTT---CCSCEEEESSSTTT
T ss_pred             HHh---hccceEEecCcccc
Confidence            222   14789999987765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.91  E-value=0.0031  Score=50.03  Aligned_cols=54  Identities=19%  Similarity=0.256  Sum_probs=39.4

Q ss_pred             cCCCcHHHHHHHHHHh-CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           59 FIPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~-~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +.....+..++..+.. .-.-+.|+|+|||+|-+ |..+|..|+++|.+|+|+.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~pkkV~IIGaG~a-GLsaA~~L~~~G~~V~vlE~~   62 (370)
T d2iida1           8 FQENDYEEFLEIARNGLKATSNPKHVVIVGAGMA-GLSAAYVLAGAGHQVTVLEAS   62 (370)
T ss_dssp             GCCTTHHHHHHHHHHCSCCCSSCCEEEEECCBHH-HHHHHHHHHHHTCEEEEECSS
T ss_pred             cCCccHHHHHHHHhcCCCCCCCCCeEEEECCCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            3333345555555432 12346789999999887 999999999999999999765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.89  E-value=0.0091  Score=45.39  Aligned_cols=98  Identities=14%  Similarity=0.096  Sum_probs=64.2

Q ss_pred             ccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC---------------------
Q 027976           58 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------  115 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---------------------  115 (216)
                      ..++|.-.-.+..+.+..---.|..|+|+|+|+. |...++.+...|+ +|+++.++.+                     
T Consensus         8 a~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~Ggv-Gl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~   86 (176)
T d1d1ta2           8 CLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGV-GLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTK   86 (176)
T ss_dssp             GGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSS
T ss_pred             HhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCch-hHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccch
Confidence            3567755555555544333457999999999985 9999999999995 6888865421                     


Q ss_pred             CH---Hhh--ccCCCEEEEecCCCCccc--CCcc-cCCcEEEEeeeCCc
Q 027976          116 NP---EQI--TSEADIVIAAAGVANLVR--GSWL-KPGAVVLDVGTCPV  156 (216)
Q Consensus       116 ~l---~~~--~~~ADIVIsatg~p~~i~--~~~i-~~g~vViDvg~~~~  156 (216)
                      ..   .+.  -..+|++|.++|.+..+.  ...+ +.+-.++-+|..+.
T Consensus        87 ~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~  135 (176)
T d1d1ta2          87 PISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPS  135 (176)
T ss_dssp             CHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCT
T ss_pred             HHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEcccc
Confidence            11   121  245899999999875321  2233 44467778887653

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.85  E-value=0.00043  Score=48.86  Aligned_cols=40  Identities=10%  Similarity=-0.178  Sum_probs=30.5

Q ss_pred             hhhhccccCccEEEEccCCCCCCCHHHHHhcCCc-ccccCccC
Q 027976            2 VVQKMKFLMPCQIIIRIHQLMHLDEGKILDAVSL-EKDVDGFH   43 (216)
Q Consensus         2 ~~~~~~~~~~~Gi~v~~Pl~~~~~~~~i~~~i~p-~KDvdg~~   43 (216)
                      .++.++..++.|++|++|+|  .+..++++.+++ .+.+.+++
T Consensus        46 ~~~~l~~~~~~G~nVT~P~K--~~~~~~~d~~~~~a~~igAvN   86 (101)
T d1p77a2          46 QLLAFFEEGAKGCNITSPFK--ERAYQLADEYSQRAKLAEACN   86 (101)
T ss_dssp             HHHHHHHTTCCEEEECTTCH--HHHHHHCSEECHHHHHHTCCS
T ss_pred             HHHHHHhccccceeeccHHH--HHHHHHhccCCHHHHHcCeeE
Confidence            35678888999999999999  444666666777 67777664

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.85  E-value=0.0047  Score=46.34  Aligned_cols=76  Identities=13%  Similarity=0.086  Sum_probs=50.5

Q ss_pred             eEEEEcCCchhHHHHHHHHHhC-C---CEEEEEeCCC----------C-------CHHhhccCCCEEEEecCCCC--ccc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRH-H---ATVSIVHALT----------K-------NPEQITSEADIVIAAAGVAN--LVR  138 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~-g---a~Vti~~~~t----------~-------~l~~~~~~ADIVIsatg~p~--~i~  138 (216)
                      ||.|||+.|.+|+-+.+.|.++ .   .++..+.+..          +       .-.+..+++|+++.|+|...  .+-
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~~   81 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKVY   81 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHHh
Confidence            6899999999999988766543 2   4655443321          0       11245789999999997532  133


Q ss_pred             CCcccCC--cEEEEeeeCCcc
Q 027976          139 GSWLKPG--AVVLDVGTCPVD  157 (216)
Q Consensus       139 ~~~i~~g--~vViDvg~~~~~  157 (216)
                      +...+.|  .+|||++...+-
T Consensus        82 ~~l~~~g~~~~VIDlSsdfR~  102 (147)
T d1mb4a1          82 PALRQAGWKGYWIDAASTLRM  102 (147)
T ss_dssp             HHHHHTTCCSEEEESSSTTTT
T ss_pred             HHHHHcCCceEEEeCCccccc
Confidence            3334445  579999877653

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.85  E-value=0.0056  Score=47.41  Aligned_cols=54  Identities=20%  Similarity=0.271  Sum_probs=47.4

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------CCHHhhccCCCEEEEecC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~ADIVIsatg  132 (216)
                      +++|+|.|||.|-- |++=|..|...|.+|+|-.|..              -+..++++.||+|.-.++
T Consensus        14 ik~k~IaViGYGsQ-G~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~P   81 (182)
T d1np3a2          14 IQGKKVAIIGYGSQ-GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTP   81 (182)
T ss_dssp             HHTSCEEEECCSHH-HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSC
T ss_pred             HCCCEEEEEeeCcH-hHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecc
Confidence            46899999999876 9999999999999999997763              256799999999998887

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.83  E-value=0.0095  Score=44.59  Aligned_cols=97  Identities=14%  Similarity=0.132  Sum_probs=58.8

Q ss_pred             ccCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCCC--------------------C
Q 027976           58 LFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK--------------------N  116 (216)
Q Consensus        58 ~~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~--------------------~  116 (216)
                      ..++|........+.+..---.|.+|+|+|+|+. |..++..+...++ .|+.+.++.+                    +
T Consensus         7 a~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~-g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~   85 (175)
T d1cdoa2           7 CLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAV-GLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSE   85 (175)
T ss_dssp             GGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSS
T ss_pred             HHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCc-cchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcch
Confidence            3567766666666654433457899999999996 6666777777776 5777755421                    1


Q ss_pred             -HH---hhc--cCCCEEEEecCCCCccc--CCcccC-CcEEEEeeeCC
Q 027976          117 -PE---QIT--SEADIVIAAAGVANLVR--GSWLKP-GAVVLDVGTCP  155 (216)
Q Consensus       117 -l~---~~~--~~ADIVIsatg~p~~i~--~~~i~~-g~vViDvg~~~  155 (216)
                       ..   +..  +.+|++|.++|.+..+.  ..+.++ +.+++=++.++
T Consensus        86 ~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~  133 (175)
T d1cdoa2          86 PISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTD  133 (175)
T ss_dssp             CHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCS
T ss_pred             hHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecC
Confidence             11   111  34789998888765322  133344 35555455543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.78  E-value=0.0051  Score=50.96  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +.|+|+|||+|-+ |..+|..|+++|.+|+|+.+..
T Consensus         1 k~KKI~IIGaG~s-GL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFS-GAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhCCCCEEEEECCC
Confidence            4699999999987 9999999999999999997764

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.74  E-value=0.01  Score=44.00  Aligned_cols=55  Identities=20%  Similarity=0.312  Sum_probs=39.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      .||.|||+.|.||..+|+.|..++.  ++.++....                         ..-.+.+++||+||.+.|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~   80 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence            3799999645579999999999984  577765320                         0113668899999988886


Q ss_pred             CC
Q 027976          134 AN  135 (216)
Q Consensus       134 p~  135 (216)
                      |.
T Consensus        81 ~~   82 (142)
T d1o6za1          81 PR   82 (142)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.74  E-value=0.0053  Score=47.20  Aligned_cols=54  Identities=13%  Similarity=0.126  Sum_probs=39.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCCC-----------CCH----HhhccCCCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------KNP----EQITSEADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-----------~~l----~~~~~~ADIVIsatg~p  134 (216)
                      |+|+|+|++|.+|+.++..|.++|.  +|+...|+.           .++    .......|.||.++|..
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeee
Confidence            8999999999999999999999996  566655542           122    22233469999988753

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.68  E-value=0.014  Score=43.68  Aligned_cols=54  Identities=20%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             CCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHHhhccCCCEEEEec
Q 027976           78 IMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAAA  131 (216)
Q Consensus        78 l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~~~ADIVIsat  131 (216)
                      |+|++++.+|-+ ..|.+.++.++...|++++++...                         +.++.+.++.||+|.+..
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            689999999953 457999999999999999998543                         246788999999998755

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.66  E-value=0.0079  Score=44.64  Aligned_cols=72  Identities=19%  Similarity=0.284  Sum_probs=52.4

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------CHHhhccCCCEEEEecCCCCcc------cCCcc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVANLV------RGSWL  142 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~ADIVIsatg~p~~i------~~~~i  142 (216)
                      ||-+||-|.+ |.++|..|.+.|..+ +.+++.+             ...+.+.++|++|.....+..+      -.+..
T Consensus         2 kIg~IGlG~M-G~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAM-GYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL   79 (156)
T ss_dssp             CEEEECCSTT-HHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred             eEEEEeHHHH-HHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence            5899999886 999999999988754 5666531             2246677899999887765421      12345


Q ss_pred             cCCcEEEEeeeCC
Q 027976          143 KPGAVVLDVGTCP  155 (216)
Q Consensus       143 ~~g~vViDvg~~~  155 (216)
                      +++.+++|.....
T Consensus        80 ~~~~~iid~sT~~   92 (156)
T d2cvza2          80 REGTYWVDATSGE   92 (156)
T ss_dssp             CTTEEEEECSCCC
T ss_pred             cccccccccccCC
Confidence            7899999998654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.64  E-value=0.0089  Score=48.68  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=41.6

Q ss_pred             CCCcHHHHHHHHH----HhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEE-EEEeC
Q 027976           60 IPCTPKGCIELLI----RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV-SIVHA  112 (216)
Q Consensus        60 ~p~Ta~g~~~~L~----~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V-ti~~~  112 (216)
                      -.+|++|++..++    +.+.+++||+|+|=|.|. ||+.+++.|.+.|++| .++.+
T Consensus        12 ~eATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGn-VG~~~a~~L~e~GakvvavsD~   68 (255)
T d1bgva1          12 PEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN-VAWGAAKKLAELGAKAVTLSGP   68 (255)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSH-HHHHHHHHHHHHTCEEEEEEET
T ss_pred             CccchHHHHHHHHHHHHhCCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEecC
Confidence            3468888765554    557899999999999987 5999999999999984 55543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.61  E-value=0.016  Score=44.11  Aligned_cols=56  Identities=21%  Similarity=0.310  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCchhHHH--HHHHHHhCC----CEEEEEeCC--------------------------CCCHHhhccCCCE
Q 027976           79 MGKNAVVIGRSNIVGLP--TSLLLQRHH----ATVSIVHAL--------------------------TKNPEQITSEADI  126 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~--~a~~L~~~g----a~Vti~~~~--------------------------t~~l~~~~~~ADI  126 (216)
                      +.-||+|||+|.. |.+  +..+|....    .++.+++..                          +.+.++.++.||+
T Consensus         2 k~~KI~iIGaGsv-~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~   80 (167)
T d1u8xx1           2 KSFSIVIAGGGST-FTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF   80 (167)
T ss_dssp             CCEEEEEECTTSS-SHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred             CCceEEEECCChh-hhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCE
Confidence            3457999999874 544  223333222    257777543                          2467899999999


Q ss_pred             EEEecCCCC
Q 027976          127 VIAAAGVAN  135 (216)
Q Consensus       127 VIsatg~p~  135 (216)
                      ||+++|.+.
T Consensus        81 Vvitag~~~   89 (167)
T d1u8xx1          81 VMAHIRVGK   89 (167)
T ss_dssp             EEECCCTTH
T ss_pred             EEECCCcCC
Confidence            999999754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.59  E-value=0.0092  Score=42.74  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+|+++|||+|-+ |.-+|..|+++|.+|+++.+..
T Consensus        29 ~~~~vvIIGgG~i-G~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVI-GLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcchh-HHHHHHHhhcccceEEEEeecc
Confidence            4799999999875 9999999999999999998764

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.57  E-value=0.012  Score=47.35  Aligned_cols=50  Identities=18%  Similarity=0.278  Sum_probs=37.9

Q ss_pred             CcHHHHHH----HHHHhCCC-CCCCeEEEEcCCchhHHHHHHHHHh-CCCE-EEEEeC
Q 027976           62 CTPKGCIE----LLIRSGVE-IMGKNAVVIGRSNIVGLPTSLLLQR-HHAT-VSIVHA  112 (216)
Q Consensus        62 ~Ta~g~~~----~L~~~~~~-l~gk~v~ViG~gg~vg~~~a~~L~~-~ga~-Vti~~~  112 (216)
                      +|++|+..    .++..+.+ ++||+|+|-|.|. ||..++++|.+ .|+. |.++.+
T Consensus         9 ATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGn-VG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1           9 ATARGASYTIREAAKVLGWDTLKGKTIAIQGYGN-AGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSH-HHHHHHHHHHHTTCCEEEEEECS
T ss_pred             hhhHHHHHHHHHHHHHhCCCCcCCCEEEEECCCH-HHHHHHHHHHHhcCcceeecccc
Confidence            57888764    44556654 9999999999987 69999998875 5887 555543

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.57  E-value=0.0099  Score=47.75  Aligned_cols=49  Identities=22%  Similarity=0.259  Sum_probs=38.1

Q ss_pred             CcHHHHH----HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHh-CCCEEE-EEe
Q 027976           62 CTPKGCI----ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-HHATVS-IVH  111 (216)
Q Consensus        62 ~Ta~g~~----~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~-~ga~Vt-i~~  111 (216)
                      +|++|+.    +.+++.+.+++|++|+|=|.|. ||..+++.|.+ .|+.|+ +.+
T Consensus         9 ATg~Gv~~~~~~~~~~~~~~l~g~~vaIqG~Gn-VG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1           9 ATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGN-VGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSH-HHHHHHHHHHHHHCCEEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHhcCCceEEeec
Confidence            4677765    4456678899999999999987 59999999965 599854 443

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.56  E-value=0.0056  Score=48.23  Aligned_cols=34  Identities=9%  Similarity=0.061  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      -|||+|+|++|.+|+.++..|+++|.+|+++.|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~   36 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRE   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence            4789999999999999999999999999998775

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.46  E-value=0.0082  Score=46.82  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..+||+|||+|-+ |..+|..|+++|.+|+|+.+.
T Consensus         3 ~~~kV~IiGaG~a-Gl~~A~~L~~~G~~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGGSIS-GLTAALMLRDAGVDVDVYERS   36 (265)
T ss_dssp             CCSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECcCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            4578999999987 999999999999999999764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.46  E-value=0.018  Score=40.51  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ..|+++|||+|-+ |.-+|..|++.|.+||++++..
T Consensus        21 ~p~~v~IiGgG~i-g~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          21 VPKSLVVIGGGYI-GIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CCSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECCCcc-ceeeeeeecccccEEEEEEecc
Confidence            3589999999875 9999999999999999998875

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.43  E-value=0.0073  Score=44.12  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=29.1

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~  113 (216)
                      .||+|+|||+|-+ |..+|..|.+.+  .+||++++.
T Consensus         1 ~gkrivIvGgG~~-G~e~A~~l~~~~~~~~Vtlie~~   36 (186)
T d1fcda1           1 AGRKVVVVGGGTG-GATAAKYIKLADPSIEVTLIEPN   36 (186)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCCcEEEECccHH-HHHHHHHHHHcCCCCcEEEEECC
Confidence            4899999999886 999999999887  478988654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.42  E-value=0.01  Score=42.27  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .|+++|||+|-+ |.-+|..|++.|++||++++.+
T Consensus        22 p~~v~IiGgG~i-G~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYI-AVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchH-HHHHHHHHHhccccceeeehhc
Confidence            589999999875 9999999999999999999864

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.41  E-value=0.023  Score=39.83  Aligned_cols=36  Identities=14%  Similarity=0.185  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ..+|+++|+|+|-+ |.-+|..|+..|.+|+++++..
T Consensus        20 ~~~~~vvVvGgG~i-g~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKT-AVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHhcchhheEeeccc
Confidence            46899999999875 9999999999999999998864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.011  Score=41.89  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      -|+++|||+|-+ |.-+|..|++.|++||++.+.+
T Consensus        21 p~~vvIiGgG~i-g~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYI-GVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCChh-hHHHHHHhhccccEEEEEeecc
Confidence            489999999875 9999999999999999998875

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.38  E-value=0.0051  Score=47.03  Aligned_cols=75  Identities=21%  Similarity=0.383  Sum_probs=51.4

Q ss_pred             eEEEEcCCchhHHHHHHHHHhC-CCEEEEE-eCC--C------------------------CCHHhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRH-HATVSIV-HAL--T------------------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~-~~~--t------------------------~~l~~~~~~ADIVIsatg~  133 (216)
                      ||.|+|++|.+|+-+.++|.++ ..++.-+ .+.  .                        .+......+.|+++.+++.
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp~   82 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATAH   82 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSCH
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccccc
Confidence            7999999999999999999987 4665433 211  0                        0112234678999999875


Q ss_pred             CC--cccCCcccCCcEEEEeeeCCc
Q 027976          134 AN--LVRGSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       134 p~--~i~~~~i~~g~vViDvg~~~~  156 (216)
                      ..  .+-+...+.+..|||++...+
T Consensus        83 ~~s~~~~~~~~~~~~~vIDlSadfR  107 (179)
T d2g17a1          83 EVSHDLAPQFLQAGCVVFDLSGAFR  107 (179)
T ss_dssp             HHHHHHHHHHHHTTCEEEECSSTTS
T ss_pred             hhHHHHhhhhhhcCceeeccccccc
Confidence            32  133344567899999987664

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.35  E-value=0.015  Score=48.22  Aligned_cols=49  Identities=24%  Similarity=0.225  Sum_probs=39.2

Q ss_pred             CcHHHHHHHHHHh------------CCCCCCCeEEEEcCCchhHHHHHHHHHhCCCEE-EEEe
Q 027976           62 CTPKGCIELLIRS------------GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV-SIVH  111 (216)
Q Consensus        62 ~Ta~g~~~~L~~~------------~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V-ti~~  111 (216)
                      +|++|+...+++.            ..+++||+|+|=|.|. ||..+|..|.+.|++| .+..
T Consensus         6 ATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGn-VG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1           6 ATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGN-VGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEEE
T ss_pred             HhHHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEc
Confidence            4778887777642            2479999999999987 5999999999999984 4553

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.29  E-value=0.011  Score=46.38  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      -.+|+|+|||+|-+ |...|..|+++|.+|+++.+.
T Consensus        47 ~~~k~VvIIGaGpA-Gl~aA~~l~~~G~~v~l~E~~   81 (233)
T d1djqa3          47 KNKDSVLIVGAGPS-GSEAARVLMESGYTVHLTDTA   81 (233)
T ss_dssp             SSCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCceEEEEcccHH-HHHHHHHHHHhccceeeEeec
Confidence            47899999999988 999999999999999999654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.0037  Score=50.21  Aligned_cols=38  Identities=16%  Similarity=0.079  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHh---CCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQR---HHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~---~ga~Vti~~~~t  114 (216)
                      .|+||.++|-|++.-+|+++|..|++   +|++|.++.|+.
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            48899999999987789999999986   789999998763

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.29  E-value=0.0073  Score=45.61  Aligned_cols=73  Identities=11%  Similarity=0.158  Sum_probs=50.6

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCC-------------------------HHhhccCCCEEEEecCCCCc
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-------------------------PEQITSEADIVIAAAGVANL  136 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-------------------------l~~~~~~ADIVIsatg~p~~  136 (216)
                      +|-|||.|.+ |.++|+.|++.|.+|++++|+.+.                         +...+.+++.++........
T Consensus         3 kIGvIGlG~M-G~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           3 DVGVVGLGVM-GANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             EEEEEeehHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            5889999986 999999999999999999886311                         22344555665555543321


Q ss_pred             c------cCCcccCCcEEEEeeeCC
Q 027976          137 V------RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       137 i------~~~~i~~g~vViDvg~~~  155 (216)
                      +      -...++++.+++|.+...
T Consensus        82 ~~~~~~~~~~~~~~~~iii~~st~~  106 (178)
T d1pgja2          82 TDSTIEQLKKVFEKGDILVDTGNAH  106 (178)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred             hhhhhhhhhhhccccceecccCccc
Confidence            1      123467889999988654

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.018  Score=47.24  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=28.7

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      +|+|+|++|.+|+.++..|+++|.+|+++.+
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            6999999999999999999999999998754

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.21  E-value=0.015  Score=43.79  Aligned_cols=53  Identities=19%  Similarity=0.089  Sum_probs=36.9

Q ss_pred             eEEEEcCCchhHHHHHHH-H-HhC----CCEEEEEeCC-----------------------CCCHHhhccCCCEEEEecC
Q 027976           82 NAVVIGRSNIVGLPTSLL-L-QRH----HATVSIVHAL-----------------------TKNPEQITSEADIVIAAAG  132 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~-L-~~~----ga~Vti~~~~-----------------------t~~l~~~~~~ADIVIsatg  132 (216)
                      |+.|||+|.. |.+.+.. | ...    ..++.+.+.+                       +.+.++.+++||+||.+.|
T Consensus         2 KIaiIGaGs~-g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           2 RIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             EEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             EEEEECCCHH-HHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            6899999864 7665543 2 222    2368777543                       2467899999999999999


Q ss_pred             CCC
Q 027976          133 VAN  135 (216)
Q Consensus       133 ~p~  135 (216)
                      .+.
T Consensus        81 ~~~   83 (162)
T d1up7a1          81 PGG   83 (162)
T ss_dssp             TTH
T ss_pred             cCC
Confidence            763

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.18  E-value=0.014  Score=42.30  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+|+++|||+|-+ |.-+|..|++.|.+|+++++.+
T Consensus        34 ~~k~v~VIGgG~i-G~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYI-GLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchH-HHHHHHHHHhhCcceeeeeecc
Confidence            5799999999875 9999999999999999998865

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=0.0079  Score=44.94  Aligned_cols=32  Identities=19%  Similarity=0.106  Sum_probs=28.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      -.|+|||+|-+ |..+|..|+++|.+|+|+.+.
T Consensus         6 yDviViGaG~~-Gl~~A~~La~~G~~V~vlE~~   37 (297)
T d2bcgg1           6 YDVIVLGTGIT-ECILSGLLSVDGKKVLHIDKQ   37 (297)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCCEEEEcCC
Confidence            45999999887 999999999999999999775

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.013  Score=41.87  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      -|+++|||+|-+ |.-+|..|++.|.+||++++..
T Consensus        22 pk~vvIvGgG~i-G~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYI-AVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCcc-HHHHHHHHhcCCcEEEEEeecc
Confidence            489999999875 9999999999999999999874

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.16  E-value=0.025  Score=42.81  Aligned_cols=54  Identities=20%  Similarity=0.193  Sum_probs=35.6

Q ss_pred             eEEEEcCCch-hHHHHHHHHHhCC----CEEEEEeCC----------------------------CCCHHhhccCCCEEE
Q 027976           82 NAVVIGRSNI-VGLPTSLLLQRHH----ATVSIVHAL----------------------------TKNPEQITSEADIVI  128 (216)
Q Consensus        82 ~v~ViG~gg~-vg~~~a~~L~~~g----a~Vti~~~~----------------------------t~~l~~~~~~ADIVI  128 (216)
                      |++|||+|.. .+..++..++...    .++.+...+                            +.+..+.+++||+||
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvVv   82 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFVT   82 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEEE
Confidence            6899999753 1234444444432    257776542                            135678899999999


Q ss_pred             EecCCCC
Q 027976          129 AAAGVAN  135 (216)
Q Consensus       129 satg~p~  135 (216)
                      +++|.+.
T Consensus        83 ~ta~~~~   89 (169)
T d1s6ya1          83 TQFRVGG   89 (169)
T ss_dssp             ECCCTTH
T ss_pred             EccccCC
Confidence            9999754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.014  Score=41.74  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      -|+++|||+|-+ |.-+|.+|++.|++||++.+..
T Consensus        23 p~~~vIiG~G~i-g~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGII-GLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCch-HHHHHHHHHhhCcceeEEEecc
Confidence            489999999865 9999999999999999998764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.15  E-value=0.008  Score=44.93  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=28.2

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  114 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t  114 (216)
                      +|+|||+|-+ |..+|..|+++|. +|+|+.+..
T Consensus         2 ~V~IIGaG~a-GL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMS-GISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHH-HHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHH-HHHHHHHHHhCCCCcEEEEECCC
Confidence            5999999987 9999999999996 699997653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.14  E-value=0.021  Score=44.66  Aligned_cols=38  Identities=32%  Similarity=0.405  Sum_probs=31.5

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHH--------------------hCCC-EEEEEeCCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQ--------------------RHHA-TVSIVHALT  114 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~--------------------~~ga-~Vti~~~~t  114 (216)
                      .++.||+|+|||.|.. +.=+|+.|+                    +.|+ +|+++.|..
T Consensus        35 ~~~~gk~VvVIGgGNv-AlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          35 PDLSGARAVVIGNGNV-ALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CCCCSSEEEEECCSHH-HHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             ccccCceEEEECCCch-hHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            5678999999999885 998888877                    5776 599998864

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.12  E-value=0.0077  Score=46.50  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|+|||+|-+ |..+|..|+++|.+|+++.+.
T Consensus         2 ~V~IIGaG~a-GL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGIS-GLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCBHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCCHH-HHHHHHHHHhCCCCEEEEecC
Confidence            6999999887 999999999999999999765

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.09  E-value=0.013  Score=48.16  Aligned_cols=36  Identities=14%  Similarity=0.020  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +-|+|+|+|++|.+|+.++..|+++|.+|++..|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            458999999999999999999999999999997753

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.05  E-value=0.011  Score=46.58  Aligned_cols=34  Identities=15%  Similarity=0.136  Sum_probs=30.3

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      |.|+|.|+++-+|+++|..|+++|++|.++.++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            5689999988789999999999999999998764

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.029  Score=44.43  Aligned_cols=80  Identities=19%  Similarity=0.253  Sum_probs=53.7

Q ss_pred             CCCCCeEEEEcC----------------CchhHHHHHHHHHhCCCEEEEEeCCCC--------------------CHHhh
Q 027976           77 EIMGKNAVVIGR----------------SNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQI  120 (216)
Q Consensus        77 ~l~gk~v~ViG~----------------gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~  120 (216)
                      +|+|++|+|.+.                ||-.|.++|..+..+||+|++++....                    .+.+.
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~   82 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   82 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhh
Confidence            688999998864                345699999999999999999976421                    13456


Q ss_pred             ccCCCEEEEecCCCCc----ccCCccc-----CCcEEEEeeeCCc
Q 027976          121 TSEADIVIAAAGVANL----VRGSWLK-----PGAVVLDVGTCPV  156 (216)
Q Consensus       121 ~~~ADIVIsatg~p~~----i~~~~i~-----~g~vViDvg~~~~  156 (216)
                      ++++|++|.+.-...+    ...+..+     .....+.+.-+|+
T Consensus        83 ~~~~D~~i~aAAvsDf~~~~~~~~k~Kk~~~~~~~l~L~L~~tpd  127 (223)
T d1u7za_          83 VQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNPD  127 (223)
T ss_dssp             GGGCSEEEECCBCCSEEESSCCSSCC-------CEEEEEEEECCC
T ss_pred             hccceeEeeeechhhhhhhhhhhhhcccccccccccceeeecCHH
Confidence            7889999966654333    1222221     1245677776664

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.0088  Score=49.84  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=29.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      |.|+|.|++|.+|+.++..|+++|.+|+.+.|
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            78889999999999999999999999998865

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.94  E-value=0.039  Score=39.91  Aligned_cols=76  Identities=12%  Similarity=0.121  Sum_probs=57.3

Q ss_pred             CCCCCeEEEEcCCc---------hhHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHHhhcc
Q 027976           77 EIMGKNAVVIGRSN---------IVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITS  122 (216)
Q Consensus        77 ~l~gk~v~ViG~gg---------~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~~  122 (216)
                      ++.+++|.|+|.+-         +-+..++..|..+|++|.+....                         ..++.+.++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            46789999999652         33678889999999999998531                         136778899


Q ss_pred             CCCEEEEecCCCCccc-CCcccCCcEEEEee
Q 027976          123 EADIVIAAAGVANLVR-GSWLKPGAVVLDVG  152 (216)
Q Consensus       123 ~ADIVIsatg~p~~i~-~~~i~~g~vViDvg  152 (216)
                      +||+||-+|..+.+.. ...++++.+|+|+-
T Consensus        90 ~~D~ivi~t~h~~f~~l~~~~~~~~~I~D~~  120 (136)
T d1mv8a3          90 SSDVLVLGNGDELFVDLVNKTPSGKKLVDLV  120 (136)
T ss_dssp             HCSEEEECSCCGGGHHHHHSCCTTCEEEESS
T ss_pred             hceEEEEEeCCHHHHHHHHHhcCCCEEEECC
Confidence            9999999999887621 12245678899974

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.94  E-value=0.03  Score=44.04  Aligned_cols=53  Identities=21%  Similarity=0.255  Sum_probs=39.9

Q ss_pred             CCCCCCCeEEEEcCCchhHHHHHHHHHh--------------------CCC-EEEEEeCCC--------CCHHhhccCCC
Q 027976           75 GVEIMGKNAVVIGRSNIVGLPTSLLLQR--------------------HHA-TVSIVHALT--------KNPEQITSEAD  125 (216)
Q Consensus        75 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~--------------------~ga-~Vti~~~~t--------~~l~~~~~~AD  125 (216)
                      ..+++||+|+|||.|.. +.=+|+.|++                    .|+ +|+++.|..        +++.+.....+
T Consensus        34 ~~~~~gk~VvVIGgGNV-AlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~  112 (225)
T d1cjca1          34 APDLSCDTAVILGQGNV-ALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPG  112 (225)
T ss_dssp             CCCTTSSEEEEESCSHH-HHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTT
T ss_pred             CccccCceEEEECCchh-HHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCchhhhcccccCC
Confidence            35688999999999885 9988988887                    476 599998874        24556666666


Q ss_pred             EEE
Q 027976          126 IVI  128 (216)
Q Consensus       126 IVI  128 (216)
                      +-+
T Consensus       113 ~~~  115 (225)
T d1cjca1         113 TRP  115 (225)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            544

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.93  E-value=0.015  Score=45.80  Aligned_cols=34  Identities=15%  Similarity=0.192  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|+|.|+++-+|++++..|+++|++|.++.+.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~   35 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLS   35 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4679999999999999999999999999999876

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.90  E-value=0.022  Score=42.95  Aligned_cols=54  Identities=15%  Similarity=0.156  Sum_probs=37.7

Q ss_pred             cCCCcHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC
Q 027976           59 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  113 (216)
Q Consensus        59 ~~p~Ta~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  113 (216)
                      .+.|.-.-.+..+.+..---.|.+|+|+|+|+. |...+..+...|+ +|+++.++
T Consensus         7 ~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgv-Gl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2           7 LIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGV-GFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECSC
T ss_pred             hhhhHHHHHHHHHHHhhCCCCCCEEEEECCCch-hHHHHHHHHHcCCceeeccCCh
Confidence            455644444444434333457999999999885 9988888888897 57777554

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.86  E-value=0.017  Score=41.03  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +|+++|||+|-+ |.-+|..|++.|++||++++..
T Consensus        32 ~~~vvIiGgG~i-G~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFI-GLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHH-HHHHHHHhhcccceEEEEeccc
Confidence            589999999876 9999999999999999998764

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.029  Score=46.05  Aligned_cols=32  Identities=19%  Similarity=0.220  Sum_probs=29.2

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      |.|+|.|++|.+|+.++..|+++|++|+.+.+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            67899999999999999999999999988843

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.83  E-value=0.016  Score=46.80  Aligned_cols=33  Identities=24%  Similarity=0.145  Sum_probs=30.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      |+|+|.|++|.+|+.++..|+++|++|+.+.+.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~   33 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR   33 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            789999999999999999999999999988764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.77  E-value=0.01  Score=41.46  Aligned_cols=37  Identities=14%  Similarity=0.078  Sum_probs=30.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++||+|+|||+|.+ |.=+|..|+....+++++++..
T Consensus        29 ~f~gK~VlVVG~g~S-a~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          29 LFVGESVLVVGGASS-ANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGTTCCEEEECSSHH-HHHHHHHHTTTSCSSEEEECTT
T ss_pred             hcCCCeEEEECCCCC-HHHHHHHHHHhcCEEEEEEecC
Confidence            578999999999987 8889999988877766665543

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.023  Score=42.73  Aligned_cols=56  Identities=13%  Similarity=0.161  Sum_probs=46.6

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHHhhccCCCEEEEec
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAAA  131 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~~~ADIVIsat  131 (216)
                      +|+|++|+++|-+..|...++.++...|++++++...                         +.++.+.++.||++.+.+
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            4789999999998888888888888899998888543                         246778999999999766


Q ss_pred             C
Q 027976          132 G  132 (216)
Q Consensus       132 g  132 (216)
                      -
T Consensus        81 ~   81 (170)
T d1otha2          81 W   81 (170)
T ss_dssp             S
T ss_pred             e
Confidence            4

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.59  E-value=0.031  Score=39.17  Aligned_cols=36  Identities=31%  Similarity=0.437  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      -..++++|+|+|-+ |.-+|..|++.|++||++++..
T Consensus        19 ~~p~~vvIiGgG~~-G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          19 ALPQHLVVVGGGYI-GLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             SCCSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCCeEEEECCCHH-HHHHHHHHhhcccceEEEeeec
Confidence            34589999999875 9999999999999999998864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.56  E-value=0.044  Score=38.71  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      -..++++|||+|-+ |.-+|..|++.|++|+++.+..
T Consensus        20 ~~p~~i~IiG~G~i-g~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIGAGVI-GLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCeEEEECCChH-HHHHHHHHHHcCCceEEEEeec
Confidence            34589999999865 9999999999999999998764

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.52  E-value=0.039  Score=42.24  Aligned_cols=55  Identities=18%  Similarity=0.232  Sum_probs=45.3

Q ss_pred             CCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHHhhccCCCEEEEe
Q 027976           77 EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAA  130 (216)
Q Consensus        77 ~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~~~ADIVIsa  130 (216)
                      +|+|.+|+.||-+ ..|.+.++.++...|++++++...                         +.++.+.+++||+|.+-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            4789999999965 567999999999999999999642                         24677899999998865


Q ss_pred             c
Q 027976          131 A  131 (216)
Q Consensus       131 t  131 (216)
                      +
T Consensus        82 ~   82 (185)
T d1dxha2          82 V   82 (185)
T ss_dssp             C
T ss_pred             h
Confidence            5

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.51  E-value=0.027  Score=41.68  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=44.3

Q ss_pred             CCCCeEEEEcCC--chhHHHHHHHHHhCCCEEEEEeCC---------------------CCCHHhhccCCCEEEEec
Q 027976           78 IMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL---------------------TKNPEQITSEADIVIAAA  131 (216)
Q Consensus        78 l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~---------------------t~~l~~~~~~ADIVIsat  131 (216)
                      ++|++|+++|=+  +-|.+.++.+|...|++++++...                     +.++.+.+++||+|.+..
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~   78 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR   78 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence            689999999995  446899999999999998888543                     246788999999988655

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.48  E-value=0.017  Score=44.18  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=31.8

Q ss_pred             CCCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           76 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        76 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+++||+|+|||+|.+ |-=+|..+++.+++++.+.+.
T Consensus        28 ~~~~gK~V~VvG~G~S-a~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSS-GIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHH-HHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCcc-HHHHHHHHHhhhccccccccc
Confidence            4689999999999998 888999999999887776554

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.48  E-value=0.013  Score=47.29  Aligned_cols=30  Identities=7%  Similarity=0.176  Sum_probs=28.2

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEe
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVH  111 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  111 (216)
                      ||+|.|++|.+|+.++..|+++|.+|+.+.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id   31 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            799999999999999999999999998875

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.47  E-value=0.018  Score=48.17  Aligned_cols=32  Identities=34%  Similarity=0.537  Sum_probs=29.5

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEe
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  111 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  111 (216)
                      |++|+|.|++|.+|..++..|+++|.+|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            79999999999999999999999999999874

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.42  E-value=0.025  Score=45.83  Aligned_cols=32  Identities=19%  Similarity=0.056  Sum_probs=30.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      |+++|.|++|.+|+.++..|+++|.+|+.+.+
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r   33 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIR   33 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEEC
Confidence            78999999999999999999999999998875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.41  E-value=0.045  Score=42.07  Aligned_cols=64  Identities=20%  Similarity=0.220  Sum_probs=43.4

Q ss_pred             HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC-------------------CCCHH----hhcc--
Q 027976           69 ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL-------------------TKNPE----QITS--  122 (216)
Q Consensus        69 ~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~-------------------t~~l~----~~~~--  122 (216)
                      ..++..++ -.|.+|+|+|+|+. |..++.++...|+ .|.++.+.                   ..++.    +.+.  
T Consensus        16 ~a~~~a~v-~~G~tVlV~GaG~v-Gl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~   93 (195)
T d1kola2          16 HGAVTAGV-GPGSTVYVAGAGPV-GLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEP   93 (195)
T ss_dssp             HHHHHTTC-CTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSS
T ss_pred             HHHHHhCC-CCCCEEEEECcCHH-HHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCC
Confidence            34555555 36899999999875 9888887878887 57776543                   12332    2222  


Q ss_pred             CCCEEEEecCCC
Q 027976          123 EADIVIAAAGVA  134 (216)
Q Consensus       123 ~ADIVIsatg~p  134 (216)
                      .+|++|.++|.+
T Consensus        94 g~D~vid~vG~~  105 (195)
T d1kola2          94 EVDCAVDAVGFE  105 (195)
T ss_dssp             CEEEEEECCCTT
T ss_pred             CcEEEEECcccc
Confidence            379999999854

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.013  Score=50.95  Aligned_cols=32  Identities=16%  Similarity=0.170  Sum_probs=28.4

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEe
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  111 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  111 (216)
                      ++++|+|||+||. |-.++..|+..|. ++++++
T Consensus        36 ~~~kVlvvG~Ggl-G~ei~k~L~~~Gvg~i~lvD   68 (426)
T d1yovb1          36 DTCKVLVIGAGGL-GCELLKNLALSGFRQIHVID   68 (426)
T ss_dssp             HHCCEEEECSSTT-HHHHHHHHHTTTCCCEEEEC
T ss_pred             hcCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEE
Confidence            4578999999996 9999999999997 699994

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.34  E-value=0.03  Score=42.67  Aligned_cols=52  Identities=31%  Similarity=0.406  Sum_probs=38.9

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHHhhccCCCEEEE
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQITSEADIVIA  129 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------~~l~~~~~~ADIVIs  129 (216)
                      +|.|||.|- ||.|+|..|+ +|.+|+.++.+.                                .+......++|+++.
T Consensus         2 kI~ViGlG~-vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           2 KIAVAGSGY-VGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             EEEEECCSH-HHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCCh-hHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            689999976 5999998775 699999885431                                123345678999999


Q ss_pred             ecCCCC
Q 027976          130 AAGVAN  135 (216)
Q Consensus       130 atg~p~  135 (216)
                      +||.|.
T Consensus        80 ~vpt~~   85 (196)
T d1dlja2          80 ATPTNY   85 (196)
T ss_dssp             CCCCCE
T ss_pred             cCCccc
Confidence            988764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.34  E-value=0.017  Score=41.20  Aligned_cols=34  Identities=32%  Similarity=0.401  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .|+++|||+|-+ |.-+|..|.+.|++||++++..
T Consensus        25 p~~~viiG~G~i-glE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYI-GLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHH-HHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchH-HHHHHHHHHhcCCeEEEEEEcc
Confidence            589999999865 9999999999999999998875

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.32  E-value=0.023  Score=46.64  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=27.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~  113 (216)
                      |+|+|||+|-+ |..+|..|+++|.  +|+++.+.
T Consensus         5 KrVaIIGaG~s-Gl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPS-GLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            78999999987 9999988988774  89999765

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.03  Score=40.23  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+||+|+|||.|.. +.--|.+|.+-..+|++++|..
T Consensus        25 ~~~k~V~VvGgGds-A~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          25 YRNQKVAVIGGGNT-AVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GTTSEEEEECSSHH-HHHHHHHHTTTSSEEEEECSSS
T ss_pred             hCCCEEEEECCCHH-HHHHHHHHhhcCCcEEEEeecc
Confidence            58999999999998 7777888888777899999975

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=94.19  E-value=0.026  Score=44.95  Aligned_cols=31  Identities=19%  Similarity=0.147  Sum_probs=26.1

Q ss_pred             EEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           83 AVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        83 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ++|.|+++-+|+++|..|+++|++|.++.++
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~   35 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   35 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4666887767999999999999999987654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.012  Score=44.43  Aligned_cols=33  Identities=9%  Similarity=0.261  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ++++|+|||.|.+ |...|..|++.|.+|+++++
T Consensus         4 k~~dVvIIGGGpa-Gl~AA~~~ar~g~~v~iie~   36 (190)
T d1trba1           4 KHSKLLILGSGPA-GYTAAVYAARANLQPVLITG   36 (190)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHTTTCCCEEECC
T ss_pred             CCCcEEEECCCHH-HHHHHHHHHHcCCceEEEEe
Confidence            5788999999997 99999999999999999864

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.15  E-value=0.033  Score=42.53  Aligned_cols=77  Identities=17%  Similarity=0.107  Sum_probs=49.0

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCCC----------------------CHHhhccCCCEEEEecCCCCc
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK----------------------NPEQITSEADIVIAAAGVANL  136 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~----------------------~l~~~~~~ADIVIsatg~p~~  136 (216)
                      .-||.|+|++|.+|+-+.++|.++- .+++...+.+.                      ......+++|+++.|++....
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            3479999999999999999998874 46555533310                      112345678999999986432


Q ss_pred             --ccCCcccCCcEEEEeeeCCc
Q 027976          137 --VRGSWLKPGAVVLDVGTCPV  156 (216)
Q Consensus       137 --i~~~~i~~g~vViDvg~~~~  156 (216)
                        +-+...+.+.+|+|.+..+.
T Consensus        85 ~~~~~~l~~~~~~v~~~~~~~~  106 (183)
T d2cvoa1          85 QEIIKGLPQELKIVDLSADFRL  106 (183)
T ss_dssp             HHHHHTSCSSCEEEECSSTTTC
T ss_pred             HHHHHHHHhcCcccccchhhhc
Confidence              22233344555555554443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.14  E-value=0.033  Score=42.89  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=26.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~  113 (216)
                      .+|+|||+|-+ |..+|..|++.  |++|+++.+.
T Consensus         2 ~kv~iIGaGpa-Gl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPA-GFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence            37999999998 99999988664  6899999554

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=94.09  E-value=0.012  Score=46.40  Aligned_cols=52  Identities=15%  Similarity=0.232  Sum_probs=37.6

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC---------CHHhhcc--CCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------NPEQITS--EADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------~l~~~~~--~ADIVIsatg~  133 (216)
                      +|+|.|++|.+|+.++..|.++|..|.+..+...         .+.+.++  +.|+||...+.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEeccc
Confidence            6999999999999999999998865554433321         1334454  45999988763

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.08  E-value=0.022  Score=44.78  Aligned_cols=31  Identities=26%  Similarity=0.387  Sum_probs=28.2

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+|||+|-+ |..+|..|+++|.+|+|+.+.
T Consensus         6 DvvIIGaGi~-Gls~A~~La~~G~~V~vlE~~   36 (276)
T d1ryia1           6 EAVVIGGGII-GSAIAYYLAKENKNTALFESG   36 (276)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            5999999875 999999999999999999764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.08  E-value=0.025  Score=40.30  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .-++++|||+|-+ |.-+|..|.+.|++||++.+.
T Consensus        19 ~P~~vvIIGgG~i-G~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYV-ALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECCCcc-HHHHHHHHhhcCCeEEEEEec
Confidence            3578999999875 999999999999999999765

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.021  Score=45.40  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=28.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+|||+|-+ |..+|..|+++|.+|+|+.+.
T Consensus         1 DViVIGaG~a-GL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           1 DVVVVGGGIS-GMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             SEEEECCBHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHH-HHHHHHHHHhCCCCEEEEecC
Confidence            4899999887 999999999999999999764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.017  Score=45.86  Aligned_cols=34  Identities=12%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  112 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  112 (216)
                      |++++|+|+|.||. |..++..|+..|. ++++++.
T Consensus        28 L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          28 LKDSRVLIVGLGGL-GCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHHCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECC
T ss_pred             HhCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEECC
Confidence            56789999999996 9999999999996 7999854

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=93.90  E-value=0.052  Score=40.58  Aligned_cols=70  Identities=16%  Similarity=0.312  Sum_probs=48.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhC-CCE-EEEEeCCC-----------CCHHhhccCCCEEEEecCCC-Cc-ccCCcccCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRH-HAT-VSIVHALT-----------KNPEQITSEADIVIAAAGVA-NL-VRGSWLKPG  145 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~-ga~-Vti~~~~t-----------~~l~~~~~~ADIVIsatg~p-~~-i~~~~i~~g  145 (216)
                      -++.|+|.|.+ |+..+..|.+. +++ |.+++++.           .+..+...+.|+|+.+|+.. ++ +-...++.|
T Consensus         4 irvgiiG~G~i-g~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~~aL~aG   82 (170)
T d1f06a1           4 IRVAIVGYGNL-GRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKFAQF   82 (170)
T ss_dssp             EEEEEECCSHH-HHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHHHTTT
T ss_pred             ceEEEECChHH-HHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcccHHHHHHHHHCC
Confidence            47999999876 99988888775 466 55666553           24556678899999999853 32 334456777


Q ss_pred             cEEEEe
Q 027976          146 AVVLDV  151 (216)
Q Consensus       146 ~vViDv  151 (216)
                      .-||++
T Consensus        83 ~~vv~~   88 (170)
T d1f06a1          83 ACTVDT   88 (170)
T ss_dssp             SEEECC
T ss_pred             CcEEEe
Confidence            766643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.80  E-value=0.037  Score=42.85  Aligned_cols=32  Identities=19%  Similarity=0.347  Sum_probs=28.4

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  114 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t  114 (216)
                      +|+|||+|-+ |..+|..|++.|. +|+|+.+.+
T Consensus         3 ~V~IvGaG~a-Gl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIG-GLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHH-HHHHHHHHHhCCCCeEEEEeCCC
Confidence            7999999887 9999999999995 899997753

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.78  E-value=0.055  Score=40.02  Aligned_cols=53  Identities=17%  Similarity=0.243  Sum_probs=40.5

Q ss_pred             CCCCeEEEEcCCch--hHHHHHHHHHhCCCEEEEE-eCC------------------CCCHHhhccCCCEEEEe
Q 027976           78 IMGKNAVVIGRSNI--VGLPTSLLLQRHHATVSIV-HAL------------------TKNPEQITSEADIVIAA  130 (216)
Q Consensus        78 l~gk~v~ViG~gg~--vg~~~a~~L~~~ga~Vti~-~~~------------------t~~l~~~~~~ADIVIsa  130 (216)
                      |+|++|+++|-+..  |++.++.+|...|++++++ ...                  +.++.+.+++||+|.+.
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence            57999999998765  7899999999999885544 221                  13677889999988743

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.67  E-value=0.044  Score=40.67  Aligned_cols=36  Identities=17%  Similarity=0.178  Sum_probs=30.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCE-EEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t  114 (216)
                      ..+++|+|||.|.+ |.=.|..+.+.||+ |++++|.+
T Consensus        43 ~~~~kVvVIGGGdt-A~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDT-AFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHH-HHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChh-HHHHHHHHHHcCCcceeEEEeCC
Confidence            45788999999987 98888888999974 88988864

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.58  E-value=0.099  Score=39.37  Aligned_cols=54  Identities=26%  Similarity=0.285  Sum_probs=37.4

Q ss_pred             CeEEEEcCCchhHHHHHH--HHHhC----CCEEEEEeCC--------------------------CCCHHhhccCCCEEE
Q 027976           81 KNAVVIGRSNIVGLPTSL--LLQRH----HATVSIVHAL--------------------------TKNPEQITSEADIVI  128 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~--~L~~~----ga~Vti~~~~--------------------------t~~l~~~~~~ADIVI  128 (216)
                      -|+.|||+|.. |.+.+.  .|+..    +.++...+.+                          +.++.+.+++||+||
T Consensus         3 mKI~iIGaGsv-g~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           3 VKIGIIGAGSA-VFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CEEEEETTTCH-HHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             cEEEEECCCHH-HhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            47999999764 754322  23322    2478888654                          136788999999999


Q ss_pred             EecCCCC
Q 027976          129 AAAGVAN  135 (216)
Q Consensus       129 satg~p~  135 (216)
                      ++.+.+.
T Consensus        82 ~~~~~g~   88 (171)
T d1obba1          82 NTAMVGG   88 (171)
T ss_dssp             ECCCTTH
T ss_pred             eeccccc
Confidence            9988764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.49  E-value=0.031  Score=41.16  Aligned_cols=31  Identities=19%  Similarity=0.244  Sum_probs=26.8

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEE
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  110 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  110 (216)
                      ++++|+|||+|-+ |.-+|..|.+.|++++++
T Consensus         2 ~~~~VvIIGgG~~-G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLA-GVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHH-HHHHHHHHHHcCCceEEE
Confidence            4789999999886 999999999999876665

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.40  E-value=0.042  Score=43.51  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=27.0

Q ss_pred             Ce-EEEEcCCchhHHHHHHHHHhCCCE-------EEEEeCC
Q 027976           81 KN-AVVIGRSNIVGLPTSLLLQRHHAT-------VSIVHAL  113 (216)
Q Consensus        81 k~-v~ViG~gg~vg~~~a~~L~~~ga~-------Vti~~~~  113 (216)
                      |+ |+|.|++.-+|+++|..|+++|++       |.++.|+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~   41 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT   41 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC
Confidence            56 567799887899999999999986       7777665

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.041  Score=44.92  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=29.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEe
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  111 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  111 (216)
                      |||+|.|++|.+|+.++..|+++|.+|+.+.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            7999999999999999999999999998874

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.042  Score=44.64  Aligned_cols=32  Identities=16%  Similarity=0.122  Sum_probs=29.3

Q ss_pred             CeE-EEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           81 KNA-VVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        81 k~v-~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      |+| +|.|++|.+|+.++..|.++|++|+.+.|
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r   33 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVR   33 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            678 89999999999999999999999988765

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.36  E-value=0.046  Score=43.15  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~  113 (216)
                      +.|+|+|.|++.-+|+++|+.|+++|+  .|..+.|+
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~   38 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCC
Confidence            468999999998899999999999997  46666665

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.014  Score=46.96  Aligned_cols=35  Identities=23%  Similarity=0.200  Sum_probs=28.2

Q ss_pred             CCCeEE-EEcCCchhHHHHHHHHHhC-CCEEEEEeCC
Q 027976           79 MGKNAV-VIGRSNIVGLPTSLLLQRH-HATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~-ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~  113 (216)
                      +||+|. |-|++.=+|+++|..|+++ |++|.++.|+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~   37 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD   37 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC
Confidence            488985 5566666699999999876 8999999876

>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.017  Score=41.83  Aligned_cols=17  Identities=0%  Similarity=-0.209  Sum_probs=14.5

Q ss_pred             ccCccEEEEccCCCCCC
Q 027976            8 FLMPCQIIIRIHQLMHL   24 (216)
Q Consensus         8 ~~~~~Gi~v~~Pl~~~~   24 (216)
                      +-.+|||+||+|||+|.
T Consensus        90 d~~V~GIlvqlPLP~~~  106 (125)
T d1a4ia2          90 DSTVHGFLVQLPLDSEN  106 (125)
T ss_dssp             CTTCCEEEECSSCCCSS
T ss_pred             cCCcceEEEecCCCCCC
Confidence            36789999999999765

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.20  E-value=0.075  Score=37.95  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      -..++++|||+|-+ |.=+|..|++.|.+||++++..
T Consensus        24 ~~p~~vvIiGgG~I-G~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGII-GLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHH-HHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccCCeEEEECCCHH-HHHHHHHhhcCCCEEEEEEeec
Confidence            34689999999765 9999999999999999998764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.14  E-value=0.068  Score=38.91  Aligned_cols=52  Identities=17%  Similarity=0.247  Sum_probs=39.7

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------------------------CH-HhhccCCCEEEEecCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NP-EQITSEADIVIAAAGVA  134 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------------~l-~~~~~~ADIVIsatg~p  134 (216)
                      +++|+|.|.. |+.++..|.++|.+|++.....+                         .| +.-+++||.+|.+++..
T Consensus         5 HiII~G~g~~-g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d   82 (153)
T d1id1a_           5 HFIVCGHSIL-AINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CEEEECCSHH-HHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             EEEEECCCHH-HHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccH
Confidence            6999999886 99999999999998888754321                         12 23467788888888753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.033  Score=45.34  Aligned_cols=32  Identities=13%  Similarity=0.267  Sum_probs=28.9

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      +++|||+|-+ |..+|..|++.|.+|+|+.+..
T Consensus         3 dv~IIGaG~s-Gl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLF-GAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHH-HHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHH-HHHHHHHHHhCCCcEEEEECCC
Confidence            6899999987 9999999999999999997753

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.03  E-value=0.053  Score=44.19  Aligned_cols=35  Identities=14%  Similarity=0.078  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .+-|+++|.|++|.+|+.++..|.++|.+|+.+.+
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            35689999999999999999999999999988754

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.96  E-value=0.036  Score=43.61  Aligned_cols=32  Identities=19%  Similarity=0.249  Sum_probs=29.2

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++|.|+++-+|+++|..|+++|++|.++.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~   34 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRH   34 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47899999888999999999999999999876

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=92.96  E-value=0.05  Score=40.38  Aligned_cols=54  Identities=17%  Similarity=0.177  Sum_probs=43.1

Q ss_pred             CCCCeEEEEcC--CchhHHHHHHHHHhCCCEEEEEeCC-----------CCCHHhhccCCCEEEEec
Q 027976           78 IMGKNAVVIGR--SNIVGLPTSLLLQRHHATVSIVHAL-----------TKNPEQITSEADIVIAAA  131 (216)
Q Consensus        78 l~gk~v~ViG~--gg~vg~~~a~~L~~~ga~Vti~~~~-----------t~~l~~~~~~ADIVIsat  131 (216)
                      .+|.+++++|-  ++-|++.++.++...|++++++...           ..++.+.+++||+|.+..
T Consensus         1 F~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           1 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeeeE
Confidence            36899999998  4446999999999999998888543           135778999999988654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.94  E-value=0.066  Score=38.70  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  115 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~  115 (216)
                      .+||+|+|+|.|.. +---|..|++.-.+|+++||.++
T Consensus        32 frgk~V~VvGgGds-A~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2          32 FRNKPLAVIGGGDS-AMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             GTTSEEEEECCSHH-HHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hCCCEEEEEcCchH-HHHHHHHHhCCCCcEEEEEeccc
Confidence            48999999999998 66667778877778999999753

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.90  E-value=0.093  Score=41.50  Aligned_cols=31  Identities=29%  Similarity=0.269  Sum_probs=26.9

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      -|+|.|+++-+|+++|..|+++|++|.+..+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~   33 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYA   33 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            4788899888899999999999999988643

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.88  E-value=0.092  Score=40.04  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=69.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC---------------------------------CCHHhhccCCCEE
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT---------------------------------KNPEQITSEADIV  127 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t---------------------------------~~l~~~~~~ADIV  127 (216)
                      ||.|.|.|.+ ||.+++.|.++. .+|.-++...                                 .++.....++|+|
T Consensus         3 KVaINGfGRI-GR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGYGTI-GKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEECCSHH-HHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEECCCHH-HHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            6899999986 999999998775 5655443321                                 1344556689999


Q ss_pred             EEecCCCCc--ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHHhh--------HcceecccCCcccHHH
Q 027976          128 IAAAGVANL--VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR--------LASVITPVPGGVGPMT  197 (216)
Q Consensus       128 Isatg~p~~--i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~~~--------~~~~~tpvpgGvGp~T  197 (216)
                      |.+||.-.-  --..+++.|.-+|=.+..+.+   + .   .-.++=-|++++...        .++|   ..+++.|+-
T Consensus        82 iecTG~f~~~e~a~~hl~~G~KvIi~~~~~~~---~-~---~~t~V~GvN~~~~~~~~~~~vVSnAsc---ttn~lap~~  151 (178)
T d1b7go1          82 VDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAE---V-A---DISFSALCNYNEALGKKYIRVVSESIV---VPENIDAIR  151 (178)
T ss_dssp             EECCSTTHHHHHHHHHHHTTCEEEECTTSCGG---G-S---SCEECHHHHHHHHTTCSEEEECCTTTH---HHHHHHHHH
T ss_pred             EECCCCcCCHHHHHHHHHcCCEEEEECCCCcc---c-c---CCeEEeCcchHHhcCCCCCEEEeCCcc---cccccHHHH
Confidence            999997321  112344556545434333222   0 0   013555566555421        1334   246888887


Q ss_pred             HHHHHHHHHHHHH
Q 027976          198 VAMLLSNTLDSAK  210 (216)
Q Consensus       198 ~amLl~n~~~a~~  210 (216)
                      .+|.+..+....|
T Consensus       152 ~~~~~~~~~~~~k  164 (178)
T d1b7go1         152 ASMKLMSAEDSMR  164 (178)
T ss_dssp             HHTTCSCHHHHHH
T ss_pred             HHHHhhcccccee
Confidence            7777666655444

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=0.086  Score=39.97  Aligned_cols=55  Identities=15%  Similarity=0.095  Sum_probs=44.0

Q ss_pred             CCCCCeEEEEcCC-chhHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHHhhccCCCEEEEe
Q 027976           77 EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAA  130 (216)
Q Consensus        77 ~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~~~ADIVIsa  130 (216)
                      +++|.+++.+|-+ ..|...++.++...|+++++|...                         +.++.+.+++||+|.+.
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            4678899999965 457899999999999999988542                         24677899999999865


Q ss_pred             c
Q 027976          131 A  131 (216)
Q Consensus       131 t  131 (216)
                      +
T Consensus        82 ~   82 (183)
T d1duvg2          82 V   82 (183)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.11  Score=42.13  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=40.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC----------------------CC-HHhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----------------------KN-PEQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t----------------------~~-l~~~~~~ADIVIsatg~  133 (216)
                      ||+|.|++|.+|+.++..|+++| .+|+.+++.+                      .+ .+...+++|+||...+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            69999999999999999999998 5788875431                      11 22367779999987774

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=92.67  E-value=0.051  Score=42.60  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+|+|||+|-+ |..+|..|+++|.+|+++.+..
T Consensus         5 ~DViIIGaG~a-Gl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGAGAA-GLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcEEEECcCHH-HHHHHHHHHHCCCcEEEEecCC
Confidence            46999999987 9999999999999999997754

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=92.63  E-value=0.16  Score=40.15  Aligned_cols=72  Identities=19%  Similarity=0.148  Sum_probs=51.3

Q ss_pred             CCC-CeEEEEcCCchhHHHHHHHHHhC------CCEEEEEeCCC-C------------------CHHhhccCCCEEEEec
Q 027976           78 IMG-KNAVVIGRSNIVGLPTSLLLQRH------HATVSIVHALT-K------------------NPEQITSEADIVIAAA  131 (216)
Q Consensus        78 l~g-k~v~ViG~gg~vg~~~a~~L~~~------ga~Vti~~~~t-~------------------~l~~~~~~ADIVIsat  131 (216)
                      ++| |+|.|||.|-- |++=|..|...      |..|+|--|.. +                  +..+++++||+|.-.+
T Consensus        41 ~kg~KkIaViGYGsQ-G~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQ-APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI  119 (226)
T ss_dssp             TTTCSEEEEECCSSH-HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred             hcCCCEEEEEEeccH-HHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence            688 99999999886 99999999984      46688875542 1                  2458899999999988


Q ss_pred             CCC---Cccc--CCcccCCcEEEE
Q 027976          132 GVA---NLVR--GSWLKPGAVVLD  150 (216)
Q Consensus       132 g~p---~~i~--~~~i~~g~vViD  150 (216)
                      +-.   ....  ...+++|..+.-
T Consensus       120 PDe~Q~~vy~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         120 SDSAQADNYEKVFSHMKPNSILGL  143 (226)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             chHHHHHHHHHHHHhcCCCceeee
Confidence            832   1111  124678876543

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=92.61  E-value=0.048  Score=43.72  Aligned_cols=54  Identities=15%  Similarity=0.185  Sum_probs=39.5

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------CHHhhc--cCCCEEEEecCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------NPEQIT--SEADIVIAAAGV  133 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------~l~~~~--~~ADIVIsatg~  133 (216)
                      -|+|+|.|+.|.+|+.++..|+++|..|.++.+..+       .+.+.+  .+.|.|+.+.+.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhccccCHHHHHHHHhhcCCCEEEEcchh
Confidence            378999999999999999999999998776643321       122332  346889977653

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.073  Score=38.08  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      .+||+|+|+|.|.. +.--|..|++...+|++++|.+
T Consensus        28 ~~gk~V~VvGgG~s-A~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          28 FKGKRVAVIGGGNS-GVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GBTCEEEEECCSHH-HHHHHHHHHTTBSEEEEECSSS
T ss_pred             cCCceEEEEeCCHH-HHHHHHhhhccCCceEEEeccc
Confidence            58999999999987 7666778888766899999875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.56  E-value=0.038  Score=43.77  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=28.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +|+|||+|-+ |..+|..|++.|.+|+|+.+.
T Consensus         4 ~V~IvGaGp~-Gl~~A~~L~~~G~~v~vlE~~   34 (292)
T d1k0ia1           4 QVAIIGAGPS-GLLLGQLLHKAGIDNVILERQ   34 (292)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            6999999875 999999999999999999765

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.46  E-value=0.11  Score=37.43  Aligned_cols=48  Identities=13%  Similarity=0.151  Sum_probs=36.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEE-eCCCCCHHhhccCCCEEEEecC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIV-HALTKNPEQITSEADIVIAAAG  132 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~-~~~t~~l~~~~~~ADIVIsatg  132 (216)
                      |+.|+|++|-+|+.++..+.+++.++... ++.   ..+.+.++|+||.-+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~---~~~~~~~~DVvIDFS~   50 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN---GVEELDSPDVVIDFSS   50 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT---EEEECSCCSEEEECSC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC---cHHHhccCCEEEEecC
Confidence            68999985556999999999999875433 332   3456788999997664

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=92.44  E-value=0.05  Score=43.39  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=27.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  113 (216)
                      +|+|||+|-+ |..+|..|+++|. +|+++.+.
T Consensus         3 dViIIGaGi~-G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIV-GTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHH-HHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCCcEEEEeCC
Confidence            6999999865 9999999999996 69999765

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.39  E-value=0.052  Score=41.91  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=27.8

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+|||+|-+ |..+|..|+++|.+|+++.+.
T Consensus         4 DViIIGaG~a-Gl~aA~~la~~G~~V~liEk~   34 (251)
T d2i0za1           4 DVIVIGGGPS-GLMAAIGAAEEGANVLLLDKG   34 (251)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            5999999886 999999999999999999654

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.30  E-value=0.048  Score=43.32  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=29.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +++|.|++.-+|+++|..|+++|++|.++.++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~   33 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDES   33 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            68999999888999999999999999998765

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.27  E-value=0.06  Score=42.33  Aligned_cols=31  Identities=19%  Similarity=0.498  Sum_probs=28.0

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .|+|||+|-+ |..+|..|+++|.+|+++.+.
T Consensus         5 DvvIIGaGi~-Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSM-GMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            5999999875 999999999999999999764

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=92.23  E-value=0.12  Score=41.56  Aligned_cols=50  Identities=28%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC-------CHHhhccCCCEEE-EecC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------NPEQITSEADIVI-AAAG  132 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------~l~~~~~~ADIVI-satg  132 (216)
                      .+|++|+|||.-     |....+.+++++++|+.++.+       .-.+.+.+||+|| |++.
T Consensus       120 ~~g~kV~vIG~~-----P~v~~l~~~~~~~~VlE~~p~~gd~p~~~~~~lLp~aD~viiTGsT  177 (251)
T d2h1qa1         120 VKGKKVGVVGHF-----PHLESLLEPICDLSILEWSPEEGDYPLPASEFILPECDYVYITCAS  177 (251)
T ss_dssp             TTTSEEEEESCC-----TTHHHHHTTTSEEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHH
T ss_pred             cCCCEEEEEecc-----hhHHHHHhcCCcEEEEeCCCCCCCCCchHHHHhhhcCCEEEEEech
Confidence            479999999983     556678889999999988752       3457888999887 5543

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.03  E-value=0.073  Score=41.87  Aligned_cols=34  Identities=12%  Similarity=0.061  Sum_probs=29.3

Q ss_pred             CeEEEEcCCchhHHHHHHHHH---hCCCEEEEEeCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQ---RHHATVSIVHALT  114 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~---~~ga~Vti~~~~t  114 (216)
                      |+|+|.|++.-+|+++|+.|+   ++|++|+++.|+.
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~   39 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNR   39 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            789999998878999998885   5789999998864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.94  E-value=0.041  Score=42.04  Aligned_cols=32  Identities=13%  Similarity=0.195  Sum_probs=27.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-------CEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g-------a~Vti~~~~  113 (216)
                      ++|+|||+|-+ |..+|..|+++|       ++|+++.+.
T Consensus         3 ~~VaVIGaGpa-GL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           3 YYIAIVGSGPS-AFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             cEEEEECcCHH-HHHHHHHHHHcCCccccCCCceEEEecC
Confidence            58999999998 999999999887       479999654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.90  E-value=0.056  Score=40.71  Aligned_cols=33  Identities=6%  Similarity=0.148  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      +.++|+|||+|.+ |...|..|++.|.+++++.+
T Consensus         4 ~~~~VvIIGgGpa-Gl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           4 HNTRLCIVGSGPA-AHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHHTTCCCEEECC
T ss_pred             ccceEEEECCCHH-HHHHHHHHHHcCCcEEEEEe
Confidence            4589999999997 99999999999999888853

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.63  E-value=0.11  Score=42.74  Aligned_cols=32  Identities=9%  Similarity=0.066  Sum_probs=27.7

Q ss_pred             CCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeC
Q 027976           80 GKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        80 gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      +|-++|-|+|   |+ |+++|..|+++||+|.++.+
T Consensus         2 ~kVAlITGaa~s~GI-G~aiA~~la~~GA~V~i~~~   36 (329)
T d1uh5a_           2 EDICFIAGIGDTNGY-GWGIAKELSKRNVKIIFGIW   36 (329)
T ss_dssp             CCEEEEECCSSSSSH-HHHHHHHHHHTTCEEEEEEC
T ss_pred             CcEEEEeCCCCCChH-HHHHHHHHHHcCCEEEEEeC
Confidence            6889999954   55 99999999999999988754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.52  E-value=0.08  Score=43.22  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=30.2

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .+..+|+|||+|-+ |..+|..|.+.|.+|+|+.+.
T Consensus         5 ~~~~dV~IIGAG~s-Gl~~a~~L~~~G~~v~i~Ek~   39 (298)
T d1w4xa1           5 PEEVDVLVVGAGFS-GLYALYRLRELGRSVHVIETA   39 (298)
T ss_dssp             CSEEEEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCEEEECccHH-HHHHHHHHHhCCCCEEEEEcC
Confidence            34568999999987 999999999999999999643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.44  E-value=0.15  Score=36.99  Aligned_cols=37  Identities=19%  Similarity=0.233  Sum_probs=30.2

Q ss_pred             CCCCCeEEEE--cCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           77 EIMGKNAVVI--GRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        77 ~l~gk~v~Vi--G~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      ..-++.++|+  |.|- +|.-+|..|+++|++||++.+..
T Consensus        36 ~~~~~~vvi~d~ggg~-ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          36 KKIGKRVVILNADTYF-MAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             SCCCSEEEEEECCCSS-HHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cccCCceEEEecCCCh-HHHHHHHHHHHcCCeEEEEecCC
Confidence            3457788887  6555 59999999999999999998764

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.28  E-value=0.049  Score=44.58  Aligned_cols=30  Identities=23%  Similarity=0.401  Sum_probs=26.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIV  110 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  110 (216)
                      |+|+|.|++|.+|+.++..|+++|..|.++
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~   32 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVT   32 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            789999999999999999999998765444

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=91.18  E-value=0.1  Score=38.27  Aligned_cols=30  Identities=10%  Similarity=0.330  Sum_probs=27.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .|+|||+|.+ |..+|..+++.|.+|+++++
T Consensus         3 DViIIGgGpa-Gl~AAi~aar~G~~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPA-GAAAAIYSARKGIRTGLMGE   32 (184)
T ss_dssp             EEEEECCSHH-HHHHHHHHHTTTCCEEEECS
T ss_pred             cEEEECcCHH-HHHHHHHHHHcCCeEEEEEE
Confidence            6899999987 99999999999999999975

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.25  Score=40.62  Aligned_cols=74  Identities=11%  Similarity=0.098  Sum_probs=54.1

Q ss_pred             CccCCCcHHH-HHHHHHHhCCCCCCCeEEEEcC--CchhHHHHHHHHHhCC-CEEEEEeCC-------------------
Q 027976           57 PLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGR--SNIVGLPTSLLLQRHH-ATVSIVHAL-------------------  113 (216)
Q Consensus        57 ~~~~p~Ta~g-~~~~L~~~~~~l~gk~v~ViG~--gg~vg~~~a~~L~~~g-a~Vti~~~~-------------------  113 (216)
                      +...||=+.+ ++.+.|+.+ +++|++++.+|-  ++.+...++.++...+ ..++++...                   
T Consensus       131 ~~~HP~Q~LaD~~Ti~e~~g-~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~  209 (310)
T d1tuga1         131 SNQHPTQTLLDLFTIQETQG-RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAW  209 (310)
T ss_dssp             TSCCHHHHHHHHHHHHHHHS-CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCE
T ss_pred             cccchHHHHHHHHHHHHHcC-CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhccccccccccee
Confidence            3457998888 555555554 699999999998  3445788888888886 579988542                   


Q ss_pred             --CCCHHhhccCCCEEEEec
Q 027976          114 --TKNPEQITSEADIVIAAA  131 (216)
Q Consensus       114 --t~~l~~~~~~ADIVIsat  131 (216)
                        ..+..+.+++||+|.+..
T Consensus       210 ~~~~d~~~a~~~aDvvy~~~  229 (310)
T d1tuga1         210 SLHSSIEEVMAEVDILYMTR  229 (310)
T ss_dssp             EEESCGGGTTTTCSEEEECC
T ss_pred             eeeechhhhccCCceeeecc
Confidence              136778899999988543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.08  E-value=0.084  Score=42.18  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=29.0

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .-.|+|||+|-+ |..+|..|+++|++|+++.+.
T Consensus        16 ~~DVlVIG~G~a-Gl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          16 TVDVVVVGSGGA-GFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             ECSEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECcCHH-HHHHHHHHHHCCCcEEEEecC
Confidence            346999999987 999999999999999999654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.95  E-value=0.097  Score=39.61  Aligned_cols=32  Identities=13%  Similarity=0.133  Sum_probs=28.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..++|||+|-+ |..+|..+++.|.+|+++.+.
T Consensus         3 yDvvVIG~G~a-G~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           3 YDYIAIGGGSG-GIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTTTCCEEEEESS
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCEEEEEecc
Confidence            35899999987 999999999999999999653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=90.87  E-value=0.072  Score=42.34  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHh-CCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQR-HHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~-~ga~Vti~~~~  113 (216)
                      ......|+|||+|-+ |..+|..|++ .|.+|+++.+.
T Consensus        30 ~~~e~DViVIGaGpa-GL~aA~~LA~~~G~~V~vlE~~   66 (278)
T d1rp0a1          30 TYAETDVVVVGAGSA-GLSAAYEISKNPNVQVAIIEQS   66 (278)
T ss_dssp             HHTEEEEEEECCSHH-HHHHHHHHHTSTTSCEEEEESS
T ss_pred             cccCCCEEEECCCHH-HHHHHHHHHHccCCeEEEEecC
Confidence            345678999999987 9999998887 49999999654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.76  E-value=0.26  Score=37.10  Aligned_cols=91  Identities=15%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEe-CCC---------------------------------CCHHhhccCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVH-ALT---------------------------------KNPEQITSEAD  125 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~-~~t---------------------------------~~l~~~~~~AD  125 (216)
                      .||.|.|.|.+ ||.+++++.++. .++.-++ ...                                 .++.....++|
T Consensus         3 irIaINGfGRI-GR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTI-GKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHH-HHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            37899999987 999999887765 5543332 210                                 13445567899


Q ss_pred             EEEEecCCCCc--ccCCcccCCcEEEEeeeCCccCCCCCCCCCCCeEecccChHHH
Q 027976          126 IVIAAAGVANL--VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEA  179 (216)
Q Consensus       126 IVIsatg~p~~--i~~~~i~~g~vViDvg~~~~~~~~~~~~~~~~~l~GDvd~~~~  179 (216)
                      +||.+||.-.-  -...+++.|+-.|=++-++.+    .+   +-.++-.|++++.
T Consensus        82 vViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~~----~~---~~t~v~GvNh~~~  130 (172)
T d2czca2          82 IIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAD----VA---EVSFVAQANYEAA  130 (172)
T ss_dssp             EEEECCSTTHHHHHHHHHHHHTCEEEECTTSCGG----GS---SEEECHHHHGGGG
T ss_pred             EEEECCCCCCCHHHHHHHHHcCCCEEEECCCCcc----cC---CCeeEecccchhh
Confidence            99999997432  123456667766666654432    01   1136666665554

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.61  E-value=0.13  Score=38.99  Aligned_cols=32  Identities=16%  Similarity=0.222  Sum_probs=28.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..|+|||+|-+ |..+|..+++.|.+|+++.+.
T Consensus         6 yDviVIG~GpA-Gl~aA~~aa~~G~kV~lie~~   37 (233)
T d1v59a1           6 HDVVIIGGGPA-GYVAAIKAAQLGFNTACVEKR   37 (233)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             cCEEEECCCHH-HHHHHHHHHHCCCcEEEEEec
Confidence            46999999998 999999999999999999654

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.48  E-value=0.45  Score=33.29  Aligned_cols=53  Identities=13%  Similarity=0.138  Sum_probs=39.9

Q ss_pred             CeEEEEcCCc---hhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecCC
Q 027976           81 KNAVVIGRSN---IVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        81 k~v~ViG~gg---~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg~  133 (216)
                      |++.|||+|.   ..|.-+...|.+.|++|+-+|.+.         +++.+.-..-|+++-.++.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~   66 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP   66 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCH
Confidence            7899999873   357778888999999999888764         2455555566888877764

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.28  Score=36.05  Aligned_cols=55  Identities=11%  Similarity=0.134  Sum_probs=40.9

Q ss_pred             CCCCeEEEEcCCch--hHHHHHHHHHhCC-CEEEEEeCC---------------------CCCHHhhccCCCEEEEecC
Q 027976           78 IMGKNAVVIGRSNI--VGLPTSLLLQRHH-ATVSIVHAL---------------------TKNPEQITSEADIVIAAAG  132 (216)
Q Consensus        78 l~gk~v~ViG~gg~--vg~~~a~~L~~~g-a~Vti~~~~---------------------t~~l~~~~~~ADIVIsatg  132 (216)
                      ++|.+|+.+|-+..  |++.++.+|...| ..++++...                     +.++.+.+++||+|.+...
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~   80 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV   80 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeecc
Confidence            67899999998665  6888888888886 456676422                     3467788999999886543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=90.28  E-value=0.19  Score=37.89  Aligned_cols=72  Identities=18%  Similarity=0.155  Sum_probs=46.0

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEeCCC----------------------------------CCHHhhccCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----------------------------------KNPEQITSEAD  125 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t----------------------------------~~l~~~~~~AD  125 (216)
                      ++|.|-|.|.+ ||.++++|..++ .++.-++...                                  .++.....++|
T Consensus         2 ~~VgINGfGRI-GR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vD   80 (171)
T d1cf2o1           2 KAVAINGYGTV-GKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD   80 (171)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred             eEEEEEcCcHH-HHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCC
Confidence            47889999886 999999887776 4544443211                                  02345567899


Q ss_pred             EEEEecCCCCc--ccCCcccCCcEEEEeee
Q 027976          126 IVIAAAGVANL--VRGSWLKPGAVVLDVGT  153 (216)
Q Consensus       126 IVIsatg~p~~--i~~~~i~~g~vViDvg~  153 (216)
                      +||.+||.-.-  -...+++.|.-+|=.+.
T Consensus        81 vViEcTG~f~~~~~~~~hl~~G~K~vi~~~  110 (171)
T d1cf2o1          81 IVIDCTPEGIGAKNLKMYKEKGIKAIFQGG  110 (171)
T ss_dssp             EEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             EEEEccCCCCCHHHHHHHHHcCCCEEEECC
Confidence            99999997321  11234566765654443

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=90.19  E-value=0.16  Score=39.80  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=28.9

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  113 (216)
                      ++.++|.|+++-+|+.++..|+++|+ .|.++.|+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~   43 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRS   43 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            56899999888889999999999998 57777664

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.16  E-value=0.12  Score=38.98  Aligned_cols=32  Identities=13%  Similarity=0.182  Sum_probs=28.5

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..|+|||+|-+ |..+|..+++.|.+|+++.+.
T Consensus         4 yDvvVIGgGpa-Gl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           4 NDVVIIGGGPG-GYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHHTCCEEEEECS
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCcEEEEEec
Confidence            46999999987 999999999999999998653

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.11  Score=42.08  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=23.4

Q ss_pred             CeEE-EEcCCchhHHHHHHHHHhCCCEEEEE
Q 027976           81 KNAV-VIGRSNIVGLPTSLLLQRHHATVSIV  110 (216)
Q Consensus        81 k~v~-ViG~gg~vg~~~a~~L~~~ga~Vti~  110 (216)
                      |+|+ |.|++.=+|+++|..|+++|++|..+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v   32 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKV   32 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEE
Confidence            4555 45988778999999999999975443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=89.86  E-value=0.13  Score=41.51  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=28.6

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..|+|||+|.+ |..+|..|+++|++|.++.+.
T Consensus        24 ~DVvVIG~G~a-Gl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          24 TDVVIIGSGGA-GLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             CSEEEECSSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             ceEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            45999999988 999999999999999999654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.79  E-value=0.14  Score=38.38  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=27.7

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ..++|||+|.+ |..+|..+++.|.+|+++.+
T Consensus         4 ~DviVIG~Gpa-Gl~aA~~aar~G~kV~vIEk   34 (223)
T d1ebda1           4 TETLVVGAGPG-GYVAAIRAAQLGQKVTIVEK   34 (223)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEEES
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCEEEEEec
Confidence            46999999988 99999999999999999954

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.66  E-value=0.17  Score=38.73  Aligned_cols=32  Identities=22%  Similarity=0.291  Sum_probs=28.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..++|||+|.+ |..+|..|++.|.+|+++.+.
T Consensus         7 yDviIIG~GPa-GlsaA~~aa~~G~~V~viE~~   38 (229)
T d1ojta1           7 YDVVVLGGGPG-GYSAAFAAADEGLKVAIVERY   38 (229)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             cCEEEECcCHH-HHHHHHHHHHCCCeEEEEecc
Confidence            46999999988 999999999999999999753

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=89.60  E-value=0.14  Score=41.22  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=28.2

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      ..|+|||+|.+ |..+|..|+++|++|.++...
T Consensus         6 ~DVvVIG~G~A-Gl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           6 CDSLVIGGGLA-GLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             cCEEEECcCHH-HHHHHHHHHHCCCCEEEEecC
Confidence            35999999998 999999999999999999653

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.30  E-value=0.59  Score=33.77  Aligned_cols=63  Identities=19%  Similarity=0.094  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEEcCC---chhHHHHHHHHHhCCCEEEEEeCCC---------CCHHhhccCCCEEEEecC
Q 027976           65 KGCIELLIRSGVEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAG  132 (216)
Q Consensus        65 ~g~~~~L~~~~~~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~ADIVIsatg  132 (216)
                      .-+.++|.+      -|++.|||+|   +..|.-++..|.+.|++|+-+|.+.         +++.+.-..-|+++-.++
T Consensus        10 ~~i~~~L~~------~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp   83 (139)
T d2d59a1          10 EDIREILTR------YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVK   83 (139)
T ss_dssp             HHHHHHHHH------CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSC
T ss_pred             HHHHHHHhc------CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeC
Confidence            344555643      4889999988   3458888899999999999998763         345555556788887776


Q ss_pred             C
Q 027976          133 V  133 (216)
Q Consensus       133 ~  133 (216)
                      .
T Consensus        84 ~   84 (139)
T d2d59a1          84 P   84 (139)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.91  E-value=0.14  Score=41.40  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +...|+|||+|.+ |..+|..|+++|++|.++.+.
T Consensus        18 e~~DVvVIGaG~a-Gl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          18 ETTQVLVVGAGSA-GFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHHHTCCEEEECSS
T ss_pred             CccCEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            3457999999988 999999999999999999653

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.88  E-value=0.58  Score=33.30  Aligned_cols=57  Identities=25%  Similarity=0.228  Sum_probs=41.7

Q ss_pred             CCCCeEEEEcCC---chhHHHHHHHHHhCC-CEEEEEeCCC---------CCHHhhccCCCEEEEecCCC
Q 027976           78 IMGKNAVVIGRS---NIVGLPTSLLLQRHH-ATVSIVHALT---------KNPEQITSEADIVIAAAGVA  134 (216)
Q Consensus        78 l~gk~v~ViG~g---g~vg~~~a~~L~~~g-a~Vti~~~~t---------~~l~~~~~~ADIVIsatg~p  134 (216)
                      ++-|+|+|||+|   +..|..+...|.+.| .+|+-+|.+.         +++.+.=...|+++.+++..
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp~~   75 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPKR   75 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCHH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecChH
Confidence            567899999997   556777888887766 4899998764         24545555678888777643

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.85  E-value=0.14  Score=38.91  Aligned_cols=31  Identities=13%  Similarity=0.189  Sum_probs=27.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .+++|||+|-+ |..+|..+++.|.+|+++.+
T Consensus         6 ~DlvVIG~Gpa-Gl~aA~~aa~~G~~V~liE~   36 (220)
T d1lvla1           6 TTLLIIGGGPG-GYVAAIRAGQLGIPTVLVEG   36 (220)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHHTCCEEEECS
T ss_pred             cCEEEECCCHH-HHHHHHHHHHCCCcEEEEec
Confidence            46999999877 99999999999999999864

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=88.83  E-value=0.18  Score=40.18  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=27.9

Q ss_pred             CeEEEEcCCchhHHHHHHHHH-----hCCCEEEEEeCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQ-----RHHATVSIVHALT  114 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~-----~~ga~Vti~~~~t  114 (216)
                      ..|+|||+|-+ |..+|.+|+     +.|.+|+|+.+..
T Consensus         8 yDV~IvGaG~a-Gl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPA-GLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCEEEECcCHH-HHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            46999999876 999999996     5789999998753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.66  E-value=0.45  Score=32.71  Aligned_cols=36  Identities=14%  Similarity=0.148  Sum_probs=28.0

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHh---CCCEEEEEeCCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQR---HHATVSIVHALT  114 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~---~ga~Vti~~~~t  114 (216)
                      -..|+++|||+|-+ |.-+|..|..   .|.+|+++.+..
T Consensus        16 ~~p~~v~IiGgG~i-g~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          16 EAPKRALCVGGGYI-SIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             SCCSEEEEECSSHH-HHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             ccCCeEEEECCChH-HHHHHHHhHhhcccccccceecccc
Confidence            34689999999875 9988876544   478999998764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.54  E-value=0.17  Score=38.58  Aligned_cols=30  Identities=17%  Similarity=0.297  Sum_probs=27.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEe
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  111 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  111 (216)
                      ..++|||+|-+ |..+|..+++.|.+|.++.
T Consensus         4 YDviVIG~Gpa-Gl~aA~~aa~~G~kV~viE   33 (235)
T d1h6va1           4 FDLIIIGGGSG-GLAAAKEAAKFDKKVMVLD   33 (235)
T ss_dssp             EEEEEECCSHH-HHHHHHHHGGGCCCEEEEC
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCeEEEEe
Confidence            46999999998 9999999999999999996

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.47  E-value=0.69  Score=32.08  Aligned_cols=50  Identities=14%  Similarity=0.133  Sum_probs=37.1

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCCCHHhhccCCCEEEEe
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA  130 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~ADIVIsa  130 (216)
                      ..+.++.|+|+|.. ||.++....+.|.++.++....+.  ...+-||-.+.+
T Consensus         9 ~~~~kigIlGgGQL-~rMla~aA~~lG~~v~v~d~~~~~--PA~~va~~~i~~   58 (111)
T d1kjqa2           9 PAATRVMLLGSGEL-GKEVAIECQRLGVEVIAVDRYADA--PAMHVAHRSHVI   58 (111)
T ss_dssp             TTCCEEEEESCSHH-HHHHHHHHHTTTCEEEEEESSTTC--GGGGGSSEEEEC
T ss_pred             CCCCEEEEEeCCHH-HHHHHHHHHHCCCEEEEEcCCCCC--chhhcCCeEEEC
Confidence            45678999999986 999999999999999999876543  223345544433

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=88.47  E-value=0.14  Score=38.02  Aligned_cols=74  Identities=22%  Similarity=0.263  Sum_probs=45.5

Q ss_pred             CeEEEEcCCchhHH-HHHHHHHhCC-CE-EEEEeCCCC-----------------CHHhh-----ccCCCEEEEecCCCC
Q 027976           81 KNAVVIGRSNIVGL-PTSLLLQRHH-AT-VSIVHALTK-----------------NPEQI-----TSEADIVIAAAGVAN  135 (216)
Q Consensus        81 k~v~ViG~gg~vg~-~~a~~L~~~g-a~-Vti~~~~t~-----------------~l~~~-----~~~ADIVIsatg~p~  135 (216)
                      -|+.|||+|+. |+ .+..+|.+.. .+ +.++.|+..                 .+.+.     ..+.|+|+.||+...
T Consensus         5 irvaIIGaG~i-g~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~   83 (157)
T d1nvmb1           5 LKVAIIGSGNI-GTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA   83 (157)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred             cEEEEEcCcHH-HHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh
Confidence            37999999886 76 4556665544 45 445554421                 11111     235799999998532


Q ss_pred             cc----cCCcccCCcEEEEeeeCC
Q 027976          136 LV----RGSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       136 ~i----~~~~i~~g~vViDvg~~~  155 (216)
                      -.    -....+.|..|||....+
T Consensus        84 h~~~~~~~~aa~~G~~VID~s~a~  107 (157)
T d1nvmb1          84 HVQNEALLRQAKPGIRLIDLTPAA  107 (157)
T ss_dssp             HHHHHHHHHHHCTTCEEEECSTTC
T ss_pred             HHHhHHHHHHHHcCCEEEEccccc
Confidence            22    233357899999998643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.26  E-value=0.036  Score=42.25  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=21.2

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCE
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHAT  106 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~  106 (216)
                      +|+|||+|-+ |..+|..|+++|.+
T Consensus         2 kV~VIGaGi~-GlstA~~L~~~G~~   25 (246)
T d1kifa1           2 RVVVIGAGVI-GLSTALCIHERYHS   25 (246)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHHTT
T ss_pred             EEEEECchHH-HHHHHHHHHHCCCC
Confidence            6999999865 99999999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.10  E-value=0.54  Score=32.40  Aligned_cols=35  Identities=9%  Similarity=0.134  Sum_probs=27.2

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHh---CCCEEEEEeCCC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQR---HHATVSIVHALT  114 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~---~ga~Vti~~~~t  114 (216)
                      ..++++|||+|-+ |--+|..|..   ++.+||++.+.+
T Consensus        19 ~p~~v~ivGgG~i-g~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          19 PPRRVLTVGGGFI-SVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CCSEEEEECSSHH-HHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             cCCeEEEECCcHH-HHHHHHHhhhcccCCcEEEEEeccc
Confidence            4689999999875 9888866554   456899998764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.01  E-value=0.3  Score=32.20  Aligned_cols=33  Identities=18%  Similarity=0.068  Sum_probs=29.1

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  114 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  114 (216)
                      |+|.|+|.|.. ||-++......|.++.+.....
T Consensus         2 k~vgIlG~GQL-grMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQL-GRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHH-HHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHH-HHHHHHHHHHcCCEEEEEcCCC
Confidence            68999999996 9999999999999998887654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.95  E-value=0.2  Score=37.51  Aligned_cols=31  Identities=13%  Similarity=0.211  Sum_probs=27.8

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      ..++|||+|-+ |..+|..+++.|.+|.++.+
T Consensus         4 YDviIIGgGpA-Gl~aA~~aar~G~~V~viE~   34 (229)
T d3lada1           4 FDVIVIGAGPG-GYVAAIKSAQLGLKTALIEK   34 (229)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHHTCCEEEEEC
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCeEEEEec
Confidence            45999999998 99999999999999999864

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.58  E-value=0.99  Score=32.43  Aligned_cols=50  Identities=18%  Similarity=0.179  Sum_probs=33.0

Q ss_pred             eEEEEcCCchhHHHHHHHHHh-CCCEEE-EEeCCCCCHHhh-ccCCCEEEEecC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQR-HHATVS-IVHALTKNPEQI-TSEADIVIAAAG  132 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~-~ga~Vt-i~~~~t~~l~~~-~~~ADIVIsatg  132 (216)
                      ||.|+|++|-+|+.++..+.+ .+.++. .+.+. +++... ..++|+||.-+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~-~~~~~~~~~~~DvvIDFS~   53 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG-DPLSLLTDGNTEVVIDFTH   53 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT-CCTHHHHTTTCSEEEECCC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-CchhhhccccCCEEEEccc
Confidence            689999766669998887655 456743 33443 233333 357999997764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.45  E-value=0.23  Score=34.85  Aligned_cols=51  Identities=18%  Similarity=0.114  Sum_probs=34.3

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCCCC--------------------C-H-HhhccCCCEEEEecCCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------N-P-EQITSEADIVIAAAGVA  134 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~-l-~~~~~~ADIVIsatg~p  134 (216)
                      |+++|+|.|.. |+.++..|.+.  .|.++..+..                    + | +..+.+|+.+|.+++..
T Consensus         1 kHivI~G~g~~-g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d   73 (129)
T d2fy8a1           1 RHVVICGWSES-TLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESD   73 (129)
T ss_dssp             CCEEEESCCHH-HHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSH
T ss_pred             CEEEEECCCHH-HHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccch
Confidence            68999999886 99999988544  4555544321                    1 2 23467788888777653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.34  E-value=0.3  Score=35.06  Aligned_cols=31  Identities=16%  Similarity=0.304  Sum_probs=25.3

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .||+|||+|-+ |.-+|..|++ +.+|+++++.
T Consensus         1 ~rVvIIGgG~~-G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPG-GFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHH-HHHHHHHHTT-TSEEEEECSS
T ss_pred             CeEEEECCcHH-HHHHHHHHHc-CCCEEEEecc
Confidence            37999999876 9999988864 6799999753

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.33  E-value=0.32  Score=34.66  Aligned_cols=34  Identities=18%  Similarity=0.125  Sum_probs=27.5

Q ss_pred             CCeEEEEcCCchhHHHHHHHHH----hCCCEEEEEeCCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQ----RHHATVSIVHALT  114 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~----~~ga~Vti~~~~t  114 (216)
                      +|+++|||+|-+ |.-+|..|+    +.|.+|+++++.+
T Consensus        37 ~k~i~IvGgG~~-G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGGGFL-GSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHHHHhcCCEEEEecccc
Confidence            689999999876 887777774    4688999998754

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=87.10  E-value=0.3  Score=39.20  Aligned_cols=30  Identities=20%  Similarity=0.280  Sum_probs=27.5

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .++|||+|-+ |-.+|..|++.|.+|.++.+
T Consensus         6 DviIVGsG~a-G~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPI-GCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHH-HHHHHHHHhhCCCeEEEEec
Confidence            6999999987 99999999999999999964

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.89  E-value=0.29  Score=36.73  Aligned_cols=30  Identities=23%  Similarity=0.310  Sum_probs=27.2

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .++|||+|-+ |..+|..+++.|.+|.++.+
T Consensus         5 DviIIG~Gpa-G~~aA~~aar~G~kV~vIEk   34 (221)
T d3grsa1           5 DYLVIGGGSG-GLASARRAAELGARAAVVES   34 (221)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEEES
T ss_pred             CEEEECCCHH-HHHHHHHHHHCCCEEEEEec
Confidence            5899999987 99999999999999999854

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=86.71  E-value=0.29  Score=39.76  Aligned_cols=30  Identities=23%  Similarity=0.205  Sum_probs=27.4

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .|+|||+|-+ |..+|..|++.|.+|.++.+
T Consensus         4 ~VIVVGsG~a-G~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYG-AAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHH-HHHHHHHHHHCcCeEEEEec
Confidence            5899999887 99999999999999999975

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=86.65  E-value=0.22  Score=41.04  Aligned_cols=29  Identities=7%  Similarity=0.225  Sum_probs=25.9

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEE
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIV  110 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  110 (216)
                      +|+|.|++|.+|+.++..|++.|.+|.++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~   30 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVN   30 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEE
Confidence            69999999999999999999999875554

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=86.59  E-value=0.36  Score=37.67  Aligned_cols=33  Identities=24%  Similarity=0.191  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           79 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        79 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      +...++|||+|-+ |..+|..+++.|.+|+++.+
T Consensus        41 k~yDvvVIGgG~a-G~~aA~~~a~~G~kv~vve~   73 (261)
T d1mo9a1          41 REYDAIFIGGGAA-GRFGSAYLRAMGGRQLIVDR   73 (261)
T ss_dssp             SCBSEEEECCSHH-HHHHHHHHHHTTCCEEEEES
T ss_pred             ccCCEEEECCCHH-HHHHHHHHHHCCCeEEEEec
Confidence            4557999999987 99999999999999998865

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=85.82  E-value=0.34  Score=37.78  Aligned_cols=31  Identities=29%  Similarity=0.458  Sum_probs=27.8

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      .++|||+|-+ |..+|..+++.|.+|.++.+.
T Consensus         3 DviVIG~G~a-G~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSG-GMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCHH-HHHHHHHHHHCCCeEEEEecC
Confidence            4899999987 999999999999999999653

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.79  E-value=1.6  Score=29.73  Aligned_cols=68  Identities=13%  Similarity=0.053  Sum_probs=47.2

Q ss_pred             HHHHHHHHhCCCCCCCeEEEEcCCc---------hhHHHHHHHHHhCCCEEEEEeCC------------CCCHHhhccCC
Q 027976           66 GCIELLIRSGVEIMGKNAVVIGRSN---------IVGLPTSLLLQRHHATVSIVHAL------------TKNPEQITSEA  124 (216)
Q Consensus        66 g~~~~L~~~~~~l~gk~v~ViG~gg---------~vg~~~a~~L~~~ga~Vti~~~~------------t~~l~~~~~~A  124 (216)
                      -+++.|++...  ..|+|.|+|-.-         +-..-+...|.+.|++|.++...            ..++.+.++.+
T Consensus         3 ~ii~~l~~~~~--~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~s   80 (108)
T d1dlja3           3 QIINVLKEQES--PVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQA   80 (108)
T ss_dssp             HHHHHHTTSCC--SSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHC
T ss_pred             HHHHHHHhccC--CCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhC
Confidence            35566655433  336899999642         33567888899999999988543            24678888999


Q ss_pred             CEEEEecCCCC
Q 027976          125 DIVIAAAGVAN  135 (216)
Q Consensus       125 DIVIsatg~p~  135 (216)
                      |+||..+....
T Consensus        81 DiII~~~~~~~   91 (108)
T d1dlja3          81 NIIVTNRYDNE   91 (108)
T ss_dssp             SEEECSSCCGG
T ss_pred             CEEEEcCCchH
Confidence            99887665443

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.67  E-value=0.21  Score=40.24  Aligned_cols=35  Identities=14%  Similarity=0.425  Sum_probs=29.5

Q ss_pred             CCCCeEEEEcCCchhHHHHHHHHHhC--CCEEEEEeCC
Q 027976           78 IMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHAL  113 (216)
Q Consensus        78 l~gk~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~  113 (216)
                      ..+++|+|||+|-+ |..+|..|+++  |.+|+++.+.
T Consensus        48 ~~~~~~~~~g~g~~-g~~~a~~~~~~~~~~~~~~~~~~   84 (311)
T d2gjca1          48 FAVSDVIIVGAGSS-GLSAAYVIAKNRPDLKVCIIESS   84 (311)
T ss_dssp             TTEESEEEECCSHH-HHHHHHHHHHHCTTSCEEEECSS
T ss_pred             ccCCCEEEECCCHH-HHHHHHHHHHhCCCCeEEEEEcC
Confidence            35778999999988 99999999864  8899999664

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.31  E-value=0.4  Score=35.63  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=25.8

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCC--CEEEEEeCC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHAL  113 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~  113 (216)
                      ||+|||+|-+ |.-+|..|.+.+  .+|++.++.
T Consensus         2 KVvIIGgG~~-G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHG-GYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHH-HHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence            6999999976 999999998865  579988753

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.01  E-value=0.35  Score=40.49  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=28.7

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHh------CCCEEEEEeCC
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQR------HHATVSIVHAL  113 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~------~ga~Vti~~~~  113 (216)
                      .-.|+|||+|-+ |..+|..|++      .|.+|.++.+.
T Consensus        32 e~DViIVGgGPA-GlsaA~~LA~l~~~~~~Gl~VlllEK~   70 (380)
T d2gmha1          32 EADVVIVGAGPA-GLSAATRLKQLAAQHEKDLRVCLVEKA   70 (380)
T ss_dssp             ECSEEEECCSHH-HHHHHHHHHHHHHHTTCCCCEEEECSS
T ss_pred             cCCEEEECCCHH-HHHHHHHHHhhhhhhcCCCEEEEEcCC
Confidence            357999999998 9999999986      89999999765

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=84.99  E-value=0.19  Score=40.87  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=30.3

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  113 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  113 (216)
                      +.+.-.|+|||+|.+ |..+|..++++|++|+++...
T Consensus         4 ~~~~~DVlVVG~G~A-Gl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           4 PVREFDAVVIGAGGA-GMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             CEEEESCEEECCSHH-HHHHHHHHHHTTCCCEEECSS
T ss_pred             CcccCCEEEECcCHH-HHHHHHHHHHcCCeEEEEeCC
Confidence            344557999999998 999999999999999988653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.95  E-value=0.21  Score=36.15  Aligned_cols=30  Identities=23%  Similarity=0.475  Sum_probs=25.7

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEE
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  107 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  107 (216)
                      ...||+|+|||+|.+ |.-+|..+++.|+.+
T Consensus        26 ~~~gkrVvVIGgG~~-g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          26 APVGNKVAIIGCGGI-GFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCCSEEEEECCHHH-HHHHHHHHTCCSSCG
T ss_pred             cccCCceEEEcCchh-HHHHHHHHHHcCCcc
Confidence            456999999998775 999999999999863

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=84.59  E-value=0.4  Score=39.00  Aligned_cols=30  Identities=30%  Similarity=0.319  Sum_probs=27.1

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEeC
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  112 (216)
                      .|+|||+|-+ |-.+|..|++.|.+|+++.+
T Consensus         9 dvIVVGsG~a-G~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYG-GAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCeEEEEeC
Confidence            5999999977 99999999999999999975

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=84.58  E-value=0.37  Score=35.84  Aligned_cols=26  Identities=8%  Similarity=0.032  Sum_probs=20.3

Q ss_pred             eEEEEcCCchhHHHHHHHHHhC-CCEE
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRH-HATV  107 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~-ga~V  107 (216)
                      +|+|.|++|-+|+.++.++.+. ++++
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~l   32 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQL   32 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEE
Confidence            7999998666699999987665 5663

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.61  E-value=1.4  Score=31.24  Aligned_cols=37  Identities=16%  Similarity=0.186  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCc----------hhHHHHHHHHHhCCCEEEEEeCCCC
Q 027976           79 MGKNAVVIGRSN----------IVGLPTSLLLQRHHATVSIVHALTK  115 (216)
Q Consensus        79 ~gk~v~ViG~gg----------~vg~~~a~~L~~~ga~Vti~~~~t~  115 (216)
                      ..|+|+|||+|.          ..+.-+++.|.+.|.++.++|.+..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            468999999986          3366778889999999999988754

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=83.53  E-value=0.53  Score=36.41  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=26.2

Q ss_pred             EEEEcCCchhHHHHHHHHHhCCC-EEEEEe
Q 027976           83 AVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  111 (216)
Q Consensus        83 v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  111 (216)
                      |+|.|++|.+|+.++..|+++|. .|++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            78999999999999999999996 588875

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=83.34  E-value=0.22  Score=36.67  Aligned_cols=29  Identities=17%  Similarity=0.090  Sum_probs=23.4

Q ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEE
Q 027976           81 KNAVVIGRSNIVGLPTSLLLQRHHATVSIV  110 (216)
Q Consensus        81 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  110 (216)
                      ++|+|||+|-+ |.-+|..|++.|.+++++
T Consensus         4 a~VvIIGgG~~-G~e~A~~l~~~g~~v~i~   32 (183)
T d1d7ya1           4 APVVVLGAGLA-SVSFVAELRQAGYQGLIT   32 (183)
T ss_dssp             SSEEEECCSHH-HHHHHHHHHHHTCCSCEE
T ss_pred             CCEEEECccHH-HHHHHHHHHhcCCceEEE
Confidence            46999999876 999999999988754443

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=83.08  E-value=4.8  Score=28.19  Aligned_cols=103  Identities=17%  Similarity=0.073  Sum_probs=61.0

Q ss_pred             eEEEEcCCchhHHHHHHHHHhCCC--EEEEEeCC-CCCHHhhccCCCEEEEecCCCCcccCCccc----CCc-EEEEeee
Q 027976           82 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL-TKNPEQITSEADIVIAAAGVANLVRGSWLK----PGA-VVLDVGT  153 (216)
Q Consensus        82 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~-t~~l~~~~~~ADIVIsatg~p~~i~~~~i~----~g~-vViDvg~  153 (216)
                      ||++.|--.- -++....+..+..  ++...... +.++.+.++++|.|+.....  .++.+.++    ++. +|.=.+.
T Consensus         2 KI~~f~~~~~-e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~--~i~~eil~~l~~~~LK~I~~~~v   78 (134)
T d1j4aa2           2 KIFAYAIRED-EKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQL--DYIAETLQALADNGITKMSLRNV   78 (134)
T ss_dssp             EEEECSCCGG-GHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSS--CBCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecccc-cHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCC--CcCHHHHhhhcccCeeEEEEccC
Confidence            5777777654 6777767776654  45444432 35677889999988754322  36666664    232 2322221


Q ss_pred             CCccCCCCCCCCCCCeEecccChHHHhhHcceecccCC-cccHHHHHHHHH
Q 027976          154 CPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPG-GVGPMTVAMLLS  203 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpg-GvGp~T~amLl~  203 (216)
                      ..                -.+|.+.+.++--.++-+|+ ++...+.+|++.
T Consensus        79 G~----------------d~ID~~aa~~~gI~V~N~P~~svae~a~~~ml~  113 (134)
T d1j4aa2          79 GV----------------DNIDMAKAKELGFQITNVPVYSYTTHAVRNMVV  113 (134)
T ss_dssp             CC----------------TTBCHHHHHHTTCEEECCCCSCCBHHHHHHHHH
T ss_pred             Cc----------------CccCHHHHHhCCeEEEECCCCcHHHHHHHHHHH
Confidence            11                24566677666556666674 466777777763

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.86  E-value=1.2  Score=35.74  Aligned_cols=46  Identities=15%  Similarity=0.181  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHhCCC-EEEEEeCC
Q 027976           65 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  113 (216)
Q Consensus        65 ~g~~~~L~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  113 (216)
                      .+..+.+++....++||+|+-||+|.  |. ++.++++.|| +|+.+...
T Consensus        21 ~~y~~ai~~~~~~~~~~~VLDiGcG~--G~-lsl~aa~~Ga~~V~aid~s   67 (311)
T d2fyta1          21 ESYRDFIYQNPHIFKDKVVLDVGCGT--GI-LSMFAAKAGAKKVLGVDQS   67 (311)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEEETCTT--SH-HHHHHHHTTCSEEEEEESS
T ss_pred             HHHHHHHHhccccCCcCEEEEECCCC--CH-HHHHHHHcCCCEEEEEeCH
Confidence            34556666655557999999999983  64 5777888997 58888544

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=82.14  E-value=1.3  Score=31.57  Aligned_cols=39  Identities=15%  Similarity=0.100  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCc----------hhHHHHHHHHHhCCCEEEEEeCCCCCH
Q 027976           79 MGKNAVVIGRSN----------IVGLPTSLLLQRHHATVSIVHALTKNP  117 (216)
Q Consensus        79 ~gk~v~ViG~gg----------~vg~~~a~~L~~~ga~Vti~~~~t~~l  117 (216)
                      .-|+|+|||+|.          ..+.-+++.|.+.|.++.++|.+....
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV   54 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI   54 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh
Confidence            458999999986          235667888999999999998876443

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.40  E-value=3.4  Score=31.48  Aligned_cols=48  Identities=15%  Similarity=-0.013  Sum_probs=32.0

Q ss_pred             HHHHHHHHHhCCCCCCCe-EEEEcCCchhHH--HHHHHHHhCCCEEEEEeC
Q 027976           65 KGCIELLIRSGVEIMGKN-AVVIGRSNIVGL--PTSLLLQRHHATVSIVHA  112 (216)
Q Consensus        65 ~g~~~~L~~~~~~l~gk~-v~ViG~gg~vg~--~~a~~L~~~ga~Vti~~~  112 (216)
                      .++.+.+.+.--+.+.++ +++.|.|..=|.  .+|++|.++|++|+++..
T Consensus        25 ~~~a~~i~~~~~~~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~   75 (211)
T d2ax3a2          25 ISVVLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFL   75 (211)
T ss_dssp             HHHHHHHHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEEC
T ss_pred             HHHHHHHHHhcccccCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEec
Confidence            566666655433455555 555687765333  678889999999988854

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.35  E-value=1.5  Score=35.64  Aligned_cols=74  Identities=14%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             CCCCCeEEEEcCCchhHHHHHHHHHhCCCEEEEEeCC--------------C-------------CCHHhhccCCCEEEE
Q 027976           77 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--------------T-------------KNPEQITSEADIVIA  129 (216)
Q Consensus        77 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~--------------t-------------~~l~~~~~~ADIVIs  129 (216)
                      +|+|-+|+=++..-+ |=.+.++|+..||+|.-+.+-              .             +.+.+.+++|||||.
T Consensus         3 PL~girVld~~~~~a-gp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~   81 (359)
T d1x74a1           3 PLSGLRVVELAGIGP-GPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIE   81 (359)
T ss_dssp             TTTTCEEEEECCSTH-HHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCCCEEEEcCCchH-HHHHHHHHHHhCCEEEEECCCCCCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEe
Confidence            688999999999876 767778899999998777332              1             125688999999995


Q ss_pred             ecCCC---Cc-ccCCc---ccCCcEEEEe
Q 027976          130 AAGVA---NL-VRGSW---LKPGAVVLDV  151 (216)
Q Consensus       130 atg~p---~~-i~~~~---i~~g~vViDv  151 (216)
                      .-...   .+ ++.+.   ++|..+.+.+
T Consensus        82 n~~pg~~~~lgl~~~~l~~~nP~lI~~si  110 (359)
T d1x74a1          82 GYRPGVTERLGLGPEECAKVNDRLIYARM  110 (359)
T ss_dssp             CSCTTHHHHHTCSHHHHHHHCTTCEEEEE
T ss_pred             cCCCCchhhcCCCHHHHHhhcCCceEEEE
Confidence            43211   11 44443   3578888777

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=81.08  E-value=1.1  Score=33.07  Aligned_cols=42  Identities=14%  Similarity=0.079  Sum_probs=33.6

Q ss_pred             chhHHHHHHHHHhCCCEEEEEeCC--------------CCCHHhhccCCCEEEEec
Q 027976           90 NIVGLPTSLLLQRHHATVSIVHAL--------------TKNPEQITSEADIVIAAA  131 (216)
Q Consensus        90 g~vg~~~a~~L~~~ga~Vti~~~~--------------t~~l~~~~~~ADIVIsat  131 (216)
                      .+|++..+.+|...|+++++|...              +.++.+.+++||+|++-+
T Consensus        19 ~~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~   74 (161)
T d1js1x2          19 QAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKN   74 (161)
T ss_dssp             SHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECC
T ss_pred             cHHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeeh
Confidence            347888999999999999888554              246789999999999643

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=81.04  E-value=2  Score=30.51  Aligned_cols=55  Identities=15%  Similarity=0.044  Sum_probs=40.8

Q ss_pred             CCCeEEEEcCCc---hhHHHHHHHHHhCCCEEEEEeCCC-----------CCHHhhccCCCEEEEecCC
Q 027976           79 MGKNAVVIGRSN---IVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        79 ~gk~v~ViG~gg---~vg~~~a~~L~~~ga~Vti~~~~t-----------~~l~~~~~~ADIVIsatg~  133 (216)
                      +-|.+.|||+|.   ..|..+...|.+.|+.++..+.+.           +++.+.-..-|+++..++.
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p~   80 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPP   80 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCH
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEeccH
Confidence            357899999874   357788888999999999997542           2454544556888888864

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=80.64  E-value=0.57  Score=37.20  Aligned_cols=41  Identities=27%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             CCHHhhccCCCEEEEecCCCCc----cc--CCcccCCcEEEEeeeCC
Q 027976          115 KNPEQITSEADIVIAAAGVANL----VR--GSWLKPGAVVLDVGTCP  155 (216)
Q Consensus       115 ~~l~~~~~~ADIVIsatg~p~~----i~--~~~i~~g~vViDvg~~~  155 (216)
                      .+..+.+++||+||.+++.+..    +.  .+.++++++++|++..+
T Consensus       133 ~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~  179 (242)
T d2b0ja2         133 SDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIP  179 (242)
T ss_dssp             SCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSC
T ss_pred             CCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCc
Confidence            4678999999999999987652    21  25678999999998754

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=80.37  E-value=2  Score=30.86  Aligned_cols=51  Identities=14%  Similarity=0.092  Sum_probs=35.1

Q ss_pred             eEEEEcCCchhHHH-HHHHHHhC-CCE-EEEEeCCC---------------CCHHhhccCCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLP-TSLLLQRH-HAT-VSIVHALT---------------KNPEQITSEADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~-~a~~L~~~-ga~-Vti~~~~t---------------~~l~~~~~~ADIVIsatg~  133 (216)
                      ++.|||.|.. |+- .+..+... +++ +.+|.++.               .++.+.+++.|+|+.+|+.
T Consensus         3 ri~iIG~G~~-g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~   71 (164)
T d1tlta1           3 RIGVVGLGGI-AQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSST   71 (164)
T ss_dssp             EEEEECCSTH-HHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCT
T ss_pred             EEEEEcCCHH-HHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccc
Confidence            6899999886 753 44555543 566 55665542               2456677889999998874

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=80.33  E-value=1.1  Score=36.40  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=27.6

Q ss_pred             CCeEEEEcCCchhHHHHHHHHHh-CCCEEEEEe
Q 027976           80 GKNAVVIGRSNIVGLPTSLLLQR-HHATVSIVH  111 (216)
Q Consensus        80 gk~v~ViG~gg~vg~~~a~~L~~-~ga~Vti~~  111 (216)
                      +-+|+|.|++|.+|..++..|++ .|.+|++++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            45899999999999999998875 788999875

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=80.26  E-value=1.8  Score=31.24  Aligned_cols=51  Identities=14%  Similarity=0.180  Sum_probs=33.0

Q ss_pred             eEEEEcCCchhHHH-HHHHHHhC-CCEEEEEeCCC----------------CCHHhhcc-CCCEEEEecCC
Q 027976           82 NAVVIGRSNIVGLP-TSLLLQRH-HATVSIVHALT----------------KNPEQITS-EADIVIAAAGV  133 (216)
Q Consensus        82 ~v~ViG~gg~vg~~-~a~~L~~~-ga~Vti~~~~t----------------~~l~~~~~-~ADIVIsatg~  133 (216)
                      ++.|||.|.. |+. ....|... +.++.+|.++.                .+.++.++ +.|+|+.+++.
T Consensus         3 rvgiiG~G~~-~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~   72 (167)
T d1xeaa1           3 KIAMIGLGDI-AQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAAT   72 (167)
T ss_dssp             EEEEECCCHH-HHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCG
T ss_pred             EEEEEcCCHH-HHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccc
Confidence            6899999986 754 45556555 45777886541                23344443 57888888874