Citrus Sinensis ID: 028026

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MAAIAWPYKLSPKVDCSHGHSKSVKKLTITPHYLSFSSSSTEQNIRFPVSKRNHLSNTTANSTLYATLNSPRGFGPPPKKTKKAKKPKTDNDSDDDGDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
maaiawpyklspkvdcshghsksvkkltitphylsfssssteqnirfpvskrnhlsnttaNSTLYAtlnsprgfgpppkktkkakkpktdndsdddgdedeegdeaeagvipeiVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLkidvpswlpVIVSFIFFGAALLGVSYGivssswdplregsllgwNEAQRNWPVFWQSlwsgggsrkk
Flexible Loop (DISEMBL)
maaiawpyklspkvdcshGHSKSVKKLTITPHYLSFSSSSTEQNIRFPVSKRNHLSNTTANSTLyatlnsprgfgpppkktkkakkpktdndsdddgdedeegdeaeagvipeivtNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQslwsgggsrkk
Low Complexity Region (SEG)
MAAIAWPYKLSPKVDCSHGHSKSVKKLTITPHYLSFSSSSTEQNIRFPVSKRNHLSNTTANSTLYATLNSPRGFGpppkktkkakkpktDNDSdddgdedeegdeaeagVIPEIVTNRMISRIGFTvgipllvgllffpffyylkvvlKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRKK
Disordered region (IsUnstruct)
****AWPYKL****************LTITPHYL**************************************************************************GVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWS*******
Disordered Region (DISOPRED)
****AWP*KLS******************************************************************************************************IVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQ***********
Disordered Region (DISEMBL)
MAAIAWPYKLSPKV*********VKKLTITPHYLSFSSSSTEQNIRFPVSKRNHLSNTTANSTLYATLNSPRGFG******************************AEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLW********
Disordered Region (DISPRO)
****AW**K*SPKVDC***HSKSVKKLTITPHYLS*************************************************************************GVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSG******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAIAWPYKLSPKVDCSHGHSKSVKKLTITPHYLSFSSSSTEQNIRFPVSKRNHLSNTTANSTLYATLNSPRGFGPPPKKTKKAKKPKTDNDSDDDGDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
O49668	214	Protein PAM68, chloroplas	yes	no	0.697	0.700	0.735	6e-50
Q9LTD9	168	Uncharacterized protein P	no	no	0.418	0.535	0.377	4e-12

>sp|O49668|PAM68_ARATH Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1

 Score =  197 bits (500), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 133/155 (85%), Gaps = 5/155 (3%)

Query: 64  LYATLNSPRGFGPPPKKTKKAKKPKTDNDSDDDGDEDEEGDEA-----EAGVIPEIVTNR 118
           L+AT+NSP+GFGPPPKKTKK+KKPK  N SD+D D+++E D+      E GVIPEIVTNR
Sbjct: 60  LHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIVTNR 119

Query: 119 MISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVS 178
           MISR+GFTVG+PL +GLLFFPFFYYLKV LK+DVP+W+P IVSF+FFG AL GVSYGIVS
Sbjct: 120 MISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVS 179

Query: 179 SSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 213
           SSWDPLREGSLLGWNEA++NWPVFWQS W+    R
Sbjct: 180 SSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

Involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD9|Y5278_ARATH Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 52/90 (57%)

Query: 115 VTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSY 174
           V  RM+ RI  +VG PL +G+        LK     DVP W+P + + + FG++ LG++Y
Sbjct: 76  VFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAY 135

Query: 175 GIVSSSWDPLREGSLLGWNEAQRNWPVFWQ 204
           G +S++ DP +  SL G  EA+ NW   W+
Sbjct: 136 GSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
255557685	220	conserved hypothetical protein [Ricinus	0.837	0.818	0.679	2e-55
449456765	213	PREDICTED: protein PAM68, chloroplastic-	0.790	0.798	0.643	6e-50
42572949	214	uncharacterized protein [Arabidopsis tha	0.697	0.700	0.735	3e-48
297804232	214	hypothetical protein ARALYDRAFT_492947 [	0.972	0.976	0.564	3e-48
224138364	226	predicted protein [Populus trichocarpa]	0.920	0.876	0.599	4e-48
225466099	196	PREDICTED: protein PAM68, chloroplastic	0.851	0.933	0.635	2e-47
357484665	202	hypothetical protein MTR_5g027010 [Medic	0.693	0.737	0.677	2e-46
356531491	211	PREDICTED: protein PAM68, chloroplastic-	0.865	0.881	0.585	1e-45
356496441	208	PREDICTED: protein PAM68, chloroplastic-	0.781	0.807	0.630	1e-44
296084201	136	unnamed protein product [Vitis vinifera]	0.483	0.764	0.826	2e-43

>gi|255557685|ref|XP_002519872.1| conserved hypothetical protein [Ricinus communis] gi|223540918|gb|EEF42476.1| conserved hypothetical protein [Ricinus communis]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 125/184 (67%), Positives = 147/184 (79%), Gaps = 4/184 (2%)

Query: 34  LSFSSSSTEQNIRFPVSKRNHLSNTTANST---LYATLNSPRGFGPPPKKTKKAKKPKTD 90
            +FS S  +Q  +FP+SK+N   N    S    LYATLNSPRGFGP PKKTK+ KK KT 
Sbjct: 37  FTFSLSPIKQASQFPISKQNFYPNQYHFSYPKPLYATLNSPRGFGPSPKKTKRTKKLKTV 96

Query: 91  N-DSDDDGDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLK 149
           N + DDD D +++ DE +AG+IPE+VTNRMISR+GF+VG+PL +GLLFFPFFYYLKV LK
Sbjct: 97  NPNDDDDDDNNDDDDEQDAGIIPEVVTNRMISRMGFSVGVPLFIGLLFFPFFYYLKVGLK 156

Query: 150 IDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSG 209
           IDVP+W+P IVSF FFG ALLGVSYGIVSSSWDP+REGSLLGWNEAQ+NWPVFWQS W  
Sbjct: 157 IDVPTWVPYIVSFFFFGTALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSFWGR 216

Query: 210 GGSR 213
            G +
Sbjct: 217 SGKK 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456765|ref|XP_004146119.1| PREDICTED: protein PAM68, chloroplastic-like [Cucumis sativus] gi|449509526|ref|XP_004163614.1| PREDICTED: protein PAM68, chloroplastic-like [Cucumis sativus]

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 143/174 (82%), Gaps = 4/174 (2%)

Query: 44  NIRFPVSKRNHLSNTTANSTLYATLNSPRGFGPPPKKTKKAKKPK--TDNDSDDDGDEDE 101
           N+R  +++  + ++T   ++L ATL  P+GFGP  +K K  K  +  +++D +++ +E++
Sbjct: 42  NLRPTINQNQNQTHTNRPTSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEED 101

Query: 102 EGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVS 161
           E +E E GVIPE+VTNRM+SR+GFTVGIPL +GLLFFPFFYYLKV LKIDVPSW+PVIVS
Sbjct: 102 EEEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVS 161

Query: 162 FIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRKK 215
           F FFG+ALLGVSYGIVSSSWDPLREGSLLGWNEAQ+NWPVFW+S+W  GGS KK
Sbjct: 162 FFFFGSALLGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWKSIW--GGSNKK 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572949|ref|NP_974571.1| uncharacterized protein [Arabidopsis thaliana] gi|75098840|sp|O49668.1|PAM68_ARATH RecName: Full=Protein PAM68, chloroplastic; AltName: Full=PHOTOSYNTHESIS AFFECTED MUTANT 68; Flags: Precursor gi|2828285|emb|CAA16699.1| putative protein [Arabidopsis thaliana] gi|7268705|emb|CAB78912.1| putative protein [Arabidopsis thaliana] gi|119360097|gb|ABL66777.1| At4g19100 [Arabidopsis thaliana] gi|332658740|gb|AEE84140.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 133/155 (85%), Gaps = 5/155 (3%)

Query: 64  LYATLNSPRGFGPPPKKTKKAKKPKTDNDSDDDGDEDEEGDEA-----EAGVIPEIVTNR 118
           L+AT+NSP+GFGPPPKKTKK+KKPK  N SD+D D+++E D+      E GVIPEIVTNR
Sbjct: 60  LHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIVTNR 119

Query: 119 MISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVS 178
           MISR+GFTVG+PL +GLLFFPFFYYLKV LK+DVP+W+P IVSF+FFG AL GVSYGIVS
Sbjct: 120 MISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVS 179

Query: 179 SSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 213
           SSWDPLREGSLLGWNEA++NWPVFWQS W+    R
Sbjct: 180 SSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804232|ref|XP_002870000.1| hypothetical protein ARALYDRAFT_492947 [Arabidopsis lyrata subsp. lyrata] gi|297315836|gb|EFH46259.1| hypothetical protein ARALYDRAFT_492947 [Arabidopsis lyrata subsp. lyrata]

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/218 (56%), Positives = 153/218 (70%), Gaps = 9/218 (4%)

Query: 1   MAAIAWPYKLSPKVDCSHGHSKSVKKLTITPHYLSFSSSSTEQNIRFPVSKRNHLSNTTA 60
           MA++   +KLS     S  H  + K+ +     L      T+  +   ++  N L     
Sbjct: 1   MASVPCSFKLSAHPRSSSKHDGNYKQCSSLVERLR---DKTKSQVPKSITCNNRL-EILR 56

Query: 61  NSTLYATLNSPRGFGPPPKKTKKAKKPKTDNDSDDDGDEDEEGDEAEA-----GVIPEIV 115
            S L+AT+NSPRGFGPPPKK KK+KKPK  N SD + D+++E D+ +      GVIPEIV
Sbjct: 57  ISPLHATMNSPRGFGPPPKKIKKSKKPKPGNQSDKEDDDEDEDDDDDEDERERGVIPEIV 116

Query: 116 TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYG 175
           TNRMISR+GFTVG+PL +GLLFFPFFYYLKV LK+DVP+W+P IVSF+FFG AL GVSYG
Sbjct: 117 TNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYG 176

Query: 176 IVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 213
           IVSSSWDPLR+GSLLGWNEA++NWPVFWQS  +    R
Sbjct: 177 IVSSSWDPLRKGSLLGWNEAKKNWPVFWQSFRNSSDKR 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138364|ref|XP_002326584.1| predicted protein [Populus trichocarpa] gi|222833906|gb|EEE72383.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 124/207 (59%), Positives = 149/207 (71%), Gaps = 9/207 (4%)

Query: 4   IAWPYKLSPKVDCSHGHSKSVKKLTITPHYLSFSSSSTEQNIRFPVSKRNHLSNTTA--- 60
            +WPYKLS          +  ++ + +P  L       +Q +RFPV       N +    
Sbjct: 18  FSWPYKLS-STSLFSKIDRICERASNSPSSLV----PAKQTLRFPVPIPGFFQNQSRLSH 72

Query: 61  NSTLYATLNSPRGFGPPPKKTKKAKKPKTDNDSDDDGDEDEEGDEAE-AGVIPEIVTNRM 119
            S+LYATLNSPRGFG PPK++KK KK K  ND DDD +++EE  E   AGVIPE+VTNRM
Sbjct: 73  PSSLYATLNSPRGFGQPPKRSKKTKKSKPGNDEDDDDEDEEEEQEEPDAGVIPEVVTNRM 132

Query: 120 ISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSS 179
           ++R+G +VG PL VG+LFFPFFYYLKV LKIDVP+W+P IVSFIFFG+ALLGVSYGIVSS
Sbjct: 133 MTRMGISVGAPLFVGVLFFPFFYYLKVGLKIDVPTWVPFIVSFIFFGSALLGVSYGIVSS 192

Query: 180 SWDPLREGSLLGWNEAQRNWPVFWQSL 206
           SWDP REGS  GWNEAQ+NWPVFWQSL
Sbjct: 193 SWDPKREGSFWGWNEAQKNWPVFWQSL 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466099|ref|XP_002266174.1| PREDICTED: protein PAM68, chloroplastic [Vitis vinifera] gi|147866231|emb|CAN79943.1| hypothetical protein VITISV_021078 [Vitis vinifera]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 146/192 (76%), Gaps = 9/192 (4%)

Query: 28  TITPHYLSFSSSSTEQNIRFPVS-----KRNHLSNTTANSTLYATLNSPRGFGPPPKKTK 82
           T TP     SS+      +FP+S      +N L ++T      A+LN P+GFGP P+KT+
Sbjct: 8   TTTPLISPPSSTPALYISQFPISTPKLYSKNRLLHSTPPC---ASLNRPKGFGPSPRKTE 64

Query: 83  KAKKPKTD-NDSDDDGDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFF 141
           K KK K + +D +D+ +E+EEG EAE GVIPEIVTNRMISR+GF+VGIPL++GLLFFPFF
Sbjct: 65  KRKKLKKNYSDDEDEEEEEEEGAEAEEGVIPEIVTNRMISRMGFSVGIPLMIGLLFFPFF 124

Query: 142 YYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPV 201
           YYLKV LKIDVP+W+P IVSF FFG+ALLGVSYGIVSSSWDPLREGS LGW EAQ NWPV
Sbjct: 125 YYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPLREGSFLGWTEAQNNWPV 184

Query: 202 FWQSLWSGGGSR 213
           FWQSLW   G +
Sbjct: 185 FWQSLWGRSGKK 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484665|ref|XP_003612620.1| hypothetical protein MTR_5g027010 [Medicago truncatula] gi|355513955|gb|AES95578.1| hypothetical protein MTR_5g027010 [Medicago truncatula]

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/155 (67%), Positives = 123/155 (79%), Gaps = 6/155 (3%)

Query: 64  LYATLNSPRGFGPPPKKTKKA----KKPKTDNDSDDDGDEDEEGDEAEAGVIPEIVTNRM 119
           + +TL  P+GFGP PKK  K     KK K + D DDD + +EE D  E G+IPE+VTNRM
Sbjct: 49  IQSTLKGPKGFGPSPKKKNKTIKNLKKNKEEEDEDDDEEYEEEEDRREQGIIPEVVTNRM 108

Query: 120 ISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSS 179
           I R+  +VGIPL VGLLFFPFFYYLKV LKIDVP+W+P +VSF FFG+ALLGVSYGIVS+
Sbjct: 109 IGRMALSVGIPLSVGLLFFPFFYYLKVGLKIDVPNWVPFLVSFFFFGSALLGVSYGIVSA 168

Query: 180 SWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRK 214
           SWDPLREGSLLGW EAQ+NWPVFW+SL   GGS+K
Sbjct: 169 SWDPLREGSLLGWTEAQKNWPVFWKSL--RGGSQK 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531491|ref|XP_003534311.1| PREDICTED: protein PAM68, chloroplastic-like [Glycine max]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 138/188 (73%), Gaps = 2/188 (1%)

Query: 30  TPHYLSFSSSSTEQNIRFPVSKRNHLSNTTAN-STLYATLNSPRGFGPPPKKTKKAKKPK 88
            P  +S+ S + +    F  S+ +H  +  ++ + L AT   P+GFGP P+K KK+KK K
Sbjct: 24  APRRISYLSGNVKSKFPFHRSEIHHQVHYFSHIAPLGATFKEPKGFGPTPRKRKKSKKMK 83

Query: 89  TDNDSDDDGDEDEEGDEA-EAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVV 147
            D    +D +E+E+ +E  + GVIPE+VTNRM++R+  +VGIPL VGLLFFP FYYLKV 
Sbjct: 84  KDYGEGEDEEEEEDEEEEPDRGVIPEVVTNRMMNRMAVSVGIPLGVGLLFFPLFYYLKVG 143

Query: 148 LKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLW 207
           LKIDVP+W+P IVSF FFG+ALLGVSYGIVSSSWDPLREGS  GW EAQ+NWPVFWQS  
Sbjct: 144 LKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPLREGSFWGWTEAQKNWPVFWQSFR 203

Query: 208 SGGGSRKK 215
            GGGSRK 
Sbjct: 204 GGGGSRKN 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496441|ref|XP_003517076.1| PREDICTED: protein PAM68, chloroplastic-like [Glycine max]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/173 (63%), Positives = 134/173 (77%), Gaps = 5/173 (2%)

Query: 46  RFPVSK---RNHLSNTTANSTLYATLNSPRGFGPPPKKTKKAKKPKTDNDSDDDGDEDEE 102
           RFP+ +    + +   +  + + AT   P+GFGP PKK KK+KK + D + +DD +E+EE
Sbjct: 38  RFPIYRSEIHHQVHYFSHLAPICATFKEPKGFGPTPKKKKKSKKMRRDYEEEDDEEEEEE 97

Query: 103 GDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSF 162
            +E + GVIPE+VTNRM+SR+  +VGIPL +GLLFFPFFYYLKV LKIDVP+W+P IVSF
Sbjct: 98  -EEPDRGVIPEVVTNRMMSRMAVSVGIPLGIGLLFFPFFYYLKVGLKIDVPTWVPFIVSF 156

Query: 163 IFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSRKK 215
            FFG+ALLGVSYGIVSSSWDPLREGS  GW EAQ+NWPVFWQSL  GG SRK 
Sbjct: 157 FFFGSALLGVSYGIVSSSWDPLREGSFWGWTEAQKNWPVFWQSL-RGGESRKN 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084201|emb|CBI24589.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/104 (82%), Positives = 94/104 (90%)

Query: 110 VIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAAL 169
           VIPEIVTNRMISR+GF+VGIPL++GLLFFPFFYYLKV LKIDVP+W+P IVSF FFG+AL
Sbjct: 33  VIPEIVTNRMISRMGFSVGIPLMIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSAL 92

Query: 170 LGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 213
           LGVSYGIVSSSWDPLREGS LGW EAQ NWPVFWQSLW   G +
Sbjct: 93  LGVSYGIVSSSWDPLREGSFLGWTEAQNNWPVFWQSLWGRSGKK 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:1006589876	214	PAM68 "AT4G19100" [Arabidopsis	0.697	0.700	0.490	3.6e-34
TAIR|locus:2149644	168	AT5G52780 "AT5G52780" [Arabido	0.437	0.559	0.308	5.2e-10

TAIR|locus:1006589876 PAM68 "AT4G19100" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 76/155 (49%), Positives = 89/155 (57%)

Query:    64 LYATLNSPRGFG-----XXXXXXXXXXXXXXDNDSXXXXXXXXXXXXXXXXVIPEIVTNR 118
             L+AT+NSP+GFG                   ++D                 VIPEIVTNR
Sbjct:    60 LHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIVTNR 119

Query:   119 MISRIGFTXXXXXXXXXXXXXXXXXXXXXXKIDVPSWLPVIVSFIFFGAALLGVSYGIVS 178
             MISR+GFT                      K+DVP+W+P IVSF+FFG AL GVSYGIVS
Sbjct:   120 MISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVS 179

Query:   179 SSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 213
             SSWDPLREGSLLGWNEA++NWPVFWQS W+    R
Sbjct:   180 SSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2149644 AT5G52780 "AT5G52780" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/94 (30%), Positives = 46/94 (48%)

Query:   111 IPEIVTNRMISRIGFTXXXXXXXXXXXXXXXXXXXXXXKIDVPSWLPVIVSFIFFGAALL 170
             IP+ V  RM+ RI  +                        DVP W+P + + + FG++ L
Sbjct:    72 IPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSAL 131

Query:   171 GVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQ 204
             G++YG +S++ DP +  SL G  EA+ NW   W+
Sbjct:   132 GIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      215       163   0.00084  107 3  11 22  0.39    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  168 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.87u 0.10s 12.97t   Elapsed:  00:00:01
  Total cpu time:  12.87u 0.10s 12.97t   Elapsed:  00:00:01
  Start:  Thu May  9 23:11:15 2013   End:  Thu May  9 23:11:16 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49668	PAM68_ARATH	No assigned EC number	0.7354	0.6976	0.7009	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
pfam11947	149	pfam11947, DUF3464, Protein of unknown function (D	7e-57

>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464)

 Score =  176 bits (449), Expect = 7e-57
 Identities = 55/148 (37%), Positives = 75/148 (50%), Gaps = 2/148 (1%)

Query: 66  ATLNSPRGFGPPPKKTKKAKKPKTDND--SDDDGDEDEEGDEAEAGVIPEIVTNRMISRI 123
           A+      F P   + K  K  +      S D   + +    A    IP++V+NRM  R+
Sbjct: 2   ASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESGIPKVVSNRMARRV 61

Query: 124 GFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDP 183
            F  GIP  +G+  F   Y L     IDVP W+ ++VS  FFG  LLG+SYGI+S+SWDP
Sbjct: 62  AFFSGIPTALGMAVFVVSYLLVSRGIIDVPPWVTLLVSLGFFGLGLLGLSYGILSASWDP 121

Query: 184 LREGSLLGWNEAQRNWPVFWQSLWSGGG 211
            R GSLLGW E + NW     +  +   
Sbjct: 122 ERPGSLLGWEEFKPNWGRMRAAWKNSRQ 149

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	100.0
PF06781	87	UPF0233: Uncharacterised protein family (UPF0233);	88.01
PLN02601	303	beta-carotene hydroxylase	86.79
PRK00159	87	putative septation inhibitor protein; Reviewed	85.3
PRK02251	87	putative septation inhibitor protein; Reviewed	80.67

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=100.00  E-value=1.6e-57  Score=375.01  Aligned_cols=142  Identities=43%  Similarity=0.844  Sum_probs=125.1

Q ss_pred             cCCCCCCCCccccccCCCCCCCCCC-------CCCCCCCccccccccCCCcHHHHHHHHhhHHHHhhhhHHhhhhhhhee
Q 028026           69 NSPRGFGPPPKKTKKAKKPKTDNDS-------DDDGDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFF  141 (215)
Q Consensus        69 ~~p~pFep~~kk~Kk~kk~~~~~~~-------~~d~~~~~~~~~~~~~aIPevVs~RMlrRia~f~GiP~~lG~~~F~~~  141 (215)
                      ..|.||||.++|+|+.|+.+++...       .+.++.+++..+.++.+||++|+|||+|||++|||||+++||++|++|
T Consensus         4 r~~~pfeP~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~   83 (153)
T PF11947_consen    4 RKRLPFEPSKKRKKNKKKQRKPPQQKAAAKSSASKKKKPQEKRDEDDSAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVF   83 (153)
T ss_pred             CCCCCCCCccchhhhhccccccccchhhhcccccccccccccccccccccCHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            4789999999988877665543321       111222334456778899999999999999999999999999999999


Q ss_pred             eeeeeccccccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHhhhchHHHHHHHhhCC
Q 028026          142 YYLKVVLKIDVPSWLPVIVSFIFFGAALLGVSYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGG  210 (215)
Q Consensus       142 Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLGISYGiLSASWDp~reGSlLG~eE~k~Nw~~mw~s~r~~~  210 (215)
                      |||++++++|||+|+++++|++|||+||||||||||||||||+|+||||||+||++||+|||+++++..
T Consensus        84 y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~~a~~~~~  152 (153)
T PF11947_consen   84 YYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGWEEFKRNWGRMWEAWRSSR  152 (153)
T ss_pred             HHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999864

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function

Probab=88.01  E-value=2  Score=33.49  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=21.3

Q ss_pred             hHHhhhhhhheeeeeeec--cccccCchhHHHHHHHHHHHhh
Q 028026          130 PLLVGLLFFPFFYYLKVV--LKIDVPSWLPVIVSFIFFGAAL  169 (215)
Q Consensus       130 P~~lG~~~F~~~Y~L~~~--~~~dvP~wv~~lvS~~~FGlGl  169 (215)
                      -+++|++-.++||+....  -.-++-.|=. ++-+++..+|+
T Consensus        40 lmllGL~WiVvyYi~~~~i~pi~~lG~WN~-~IGfg~~~~Gf   80 (87)
T PF06781_consen   40 LMLLGLLWIVVYYISGGQIPPIPDLGNWNL-AIGFGLMIVGF   80 (87)
T ss_pred             HHHHHHHHHhhhhcccCCCCCcccccchHH-HHHHHHHHHHH
Confidence            467888877777766554  2334555633 33334443443

>PLN02601 beta-carotene hydroxylase

Probab=86.79  E-value=1.6  Score=40.84  Aligned_cols=56  Identities=13%  Similarity=0.125  Sum_probs=32.2

Q ss_pred             HHHHHHHHhh-----------HHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh
Q 028026          113 EIVTNRMISR-----------IGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG  171 (215)
Q Consensus       113 evVs~RMlrR-----------ia~f~GiP~~lG~~~F~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlGlLG  171 (215)
                      .-|+.|+.||           ++-++||-....++++.=|+|-...  -|+|-- -++..+++|..+++|
T Consensus        80 ~~~~~~~~~k~~er~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~--g~~p~~-em~~~~al~lgtfvg  146 (303)
T PLN02601         80 SRLLKKAEKKKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKG--GEVSML-EMFGTFALSVGAAVG  146 (303)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCC--CCcCHH-HHHHHHHHHHHHHHH
Confidence            3466676665           4556677666666766666666654  466643 344444444445555

>PRK00159 putative septation inhibitor protein; Reviewed

Probab=85.30  E-value=3  Score=32.70  Aligned_cols=39  Identities=23%  Similarity=0.486  Sum_probs=21.9

Q ss_pred             HHhhhhhhheeeeeeecccc--ccCchhHHHHHHHHHHHhhh
Q 028026          131 LLVGLLFFPFFYYLKVVLKI--DVPSWLPVIVSFIFFGAALL  170 (215)
Q Consensus       131 ~~lG~~~F~~~Y~L~~~~~~--dvP~wv~~lvS~~~FGlGlL  170 (215)
                      +.+|++-.+++|+....-.+  ++-.|= +++-++++-+|++
T Consensus        41 m~~GllWlvvyYl~~~~~P~m~~lG~WN-~~IGFg~~i~G~l   81 (87)
T PRK00159         41 MLIGLAWLVVNYLAGPAIPWMADLGPWN-YAIGFALMITGLL   81 (87)
T ss_pred             HHHHHHHHHHHhhccCCCCCCcccCchh-HHHHHHHHHHHHH
Confidence            66788888888875432221  555663 3444444444443

>PRK02251 putative septation inhibitor protein; Reviewed

Probab=80.67  E-value=5.4  Score=31.26  Aligned_cols=14  Identities=21%  Similarity=0.876  Sum_probs=10.7

Q ss_pred             HHhhhhhhheeeee
Q 028026          131 LLVGLLFFPFFYYL  144 (215)
Q Consensus       131 ~~lG~~~F~~~Y~L  144 (215)
                      +.+|++-.+++|+.
T Consensus        42 m~~Gl~WlvvyYl~   55 (87)
T PRK02251         42 MIIGLIWLVVYYLS   55 (87)
T ss_pred             HHHHHHHHHHHhhh
Confidence            56788888888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00