Citrus Sinensis ID: 028086

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MALCLSRSFSSYSQLHLSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEccEEEEcccHHHHHHHcccccccEEEccEEEEEEEEccccccEEccccccccccccEEEEEcHHHHHHccccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccEEEcccHHHHHHHcccccccEccccEEEEEEEEEccccHEEEccccccccccccccEccccccHHHEHHccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
malclsrsfssySQLHLSSLLsrckpnftspnyphklpkstnlplvhhqnqicsssysmdappegyrrnvgicliNSSKkifaasrldipdswqmpqnedpKVAALRELKeetgvssaEVLAEvpywltydfppevREKLkhqwggdwkgQAQKWFLLKFTGkeeeinllgdksekpefgewkwmspeQILERAVdfkkpvykEVFTVFTPHLQ
Flexible Loop (DISEMBL)
MALCLSRSFSSYSQLHLSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRldipdswqmpqnEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEeeinllgdksekpefgewkwmSPEQILERAVDFKKPVYKEVFTVFTPHLQ
Low Complexity Region (SEG)
MAlclsrsfssysqlhlssllsRCKPNFTSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ
Disordered region (IsUnstruct)
****************************************************************GYRRNVGICLINSSKKIFAASRLDI***************************SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGD****PEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT****
Disordered Region (DISOPRED)
********FSSY*****************************************************YRRNVGICLINSSKKIFAASRLDIPDSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ
Disordered Region (DISEMBL)
MALCLSRSFSSYSQLHLSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ
Disordered Region (DISPRO)
*ALCLSRSFSSYSQLHLSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHH*N*******SMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALCLSRSFSSYSQLHLSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q9CAF2	216	Nudix hydrolase 26, chlor	yes	no	0.855	0.847	0.670	8e-72
Q9FNH4	227	Nudix hydrolase 27, chlor	no	no	0.794	0.748	0.582	5e-56
Q9C6Z2	175	Nudix hydrolase 25 OS=Ara	no	no	0.724	0.885	0.546	2e-47
Q2RV14	165	RNA pyrophosphohydrolase	yes	no	0.626	0.812	0.462	3e-32
A8LKJ8	160	RNA pyrophosphohydrolase	yes	no	0.658	0.881	0.445	9e-31
A4WWV6	162	RNA pyrophosphohydrolase	yes	no	0.663	0.876	0.455	1e-30
B9KN59	162	RNA pyrophosphohydrolase	yes	no	0.663	0.876	0.461	2e-30
Q3IZC1	162	RNA pyrophosphohydrolase	yes	no	0.663	0.876	0.461	2e-30
A3PMX6	162	RNA pyrophosphohydrolase	yes	no	0.663	0.876	0.455	3e-30
Q5FU29	170	RNA pyrophosphohydrolase	yes	no	0.635	0.8	0.435	1e-28

>sp|Q9CAF2|NUD26_ARATH Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1

 Score =  269 bits (688), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 153/194 (78%), Gaps = 11/194 (5%)

Query: 32  NYPHKLPKSTNLPLVHHQNQ------ICSSSYSMDAPPEGYRRNVGICLINSSKKIFAAS 85
           NYP K  K ++LP +H   +            SM++PPEGYRRNVG+CL+NSSKKIF AS
Sbjct: 23  NYPSKPIKFSSLPFLHRCRKSRVSSSSARCCSSMESPPEGYRRNVGVCLMNSSKKIFTAS 82

Query: 86  RLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKL 140
           RLDIP +WQMPQ      EDP+VA +RELKEETGV SAE+LAE P+W+TYDFPP+VREKL
Sbjct: 83  RLDIPSAWQMPQGGIDEGEDPRVAVMRELKEETGVHSAEILAEAPHWITYDFPPDVREKL 142

Query: 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKP 200
           K +WG DWKGQAQKWFLLKFTGK+EEINLLGD +EKPEFGEW W SP+Q++E AV+FKKP
Sbjct: 143 KVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDGTEKPEFGEWSWTSPDQVVENAVEFKKP 202

Query: 201 VYKEVFTVFTPHLQ 214
           VYKEV + F  HLQ
Sbjct: 203 VYKEVMSAFASHLQ 216

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A), diadenosine 5',5'''-P(1)P(4) tetraphosphate (Ap(4)A) and diadenosine 5',5'''-P(1)P(3) triphosphate (Ap(3)A) as substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 7

>sp|Q9FNH4|NUD27_ARATH Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27 PE=1 SV=1

 Score =  217 bits (552), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/175 (58%), Positives = 130/175 (74%), Gaps = 5/175 (2%)

Query: 44  PLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN----- 98
           PLV     + S + ++++PP GYR+NVGICL++  +KIF AS++ IPD+WQMPQ      
Sbjct: 40  PLVVLSVALSSPARTVESPPVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEG 99

Query: 99  EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLL 158
           ED + AA REL+EETGV+SAE +AE+P WLTYDFP EV++KL  +W   +KGQAQKWFL 
Sbjct: 100 EDLRNAAFRELREETGVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLF 159

Query: 159 KFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213
           KFTGKEEEINLLGD + KPEF  W WM PEQ++E AV FK+PVY+ V   F P+ 
Sbjct: 160 KFTGKEEEINLLGDGTAKPEFKVWSWMLPEQVIEHAVYFKRPVYEHVIKQFNPYF 214

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A) as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C6Z2|NUD25_ARATH Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1

 Score =  189 bits (479), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/163 (54%), Positives = 118/163 (72%), Gaps = 8/163 (4%)

Query: 59  MDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEET 113
           M+  P GYR NVG+CLINS   +F ASRL++P +WQMPQ      EDPK AA+REL+EET
Sbjct: 1   MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query: 114 GVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEE--EINLLG 171
           GV SAE+++EVP WLTYDFPP V+ K+   WGG+W GQAQKW+L++    E+  EINL  
Sbjct: 61  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 120

Query: 172 DKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 214
           ++++  EF EWKW  PE+++E+AVD+K+P Y+EV   F   L 
Sbjct: 121 NEADS-EFAEWKWAKPEEVVEQAVDYKRPTYEEVIKTFGSFLN 162

Mediates the hydrolysis of diadenosine 5',5''-P(1)P(4) tetraphosphate (Ap(4)A), a signaling molecule involved in regulation of DNA replication and repair.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|Q2RV14|RPPH_RHORT RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rppH PE=3 SV=1

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 95/145 (65%), Gaps = 11/145 (7%)

Query: 66  YRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEETGVSSAEV 120
           YR+ VGI LIN+  ++F A RLD P++WQMPQ      EDP+ AA RE++EE G  +A +
Sbjct: 14  YRQGVGIMLINARGQVFVARRLDSPEAWQMPQGGIDAGEDPETAAWREMEEEIGTRNALL 73

Query: 121 LAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFG 180
           L E   WL YD P E+R +L   WGG ++GQ QKWF  +FTG++ +INL    +  PEF 
Sbjct: 74  LGETAGWLGYDLPEELRGRL---WGGRFQGQRQKWFAFRFTGQDADINL---ATAHPEFD 127

Query: 181 EWKWMSPEQILERAVDFKKPVYKEV 205
            W+W+  + ++   V FK+PVY++V
Sbjct: 128 AWRWVDVDTLVALIVPFKRPVYEQV 152

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A8LKJ8|RPPH_DINSH RNA pyrophosphohydrolase OS=Dinoroseobacter shibae (strain DFL 12) GN=rppH PE=3 SV=1

 Score =  133 bits (334), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 101/157 (64%), Gaps = 16/157 (10%)

Query: 66  YRRNVGICLINSSKKIFAASRLD--IPDSWQMPQN-----EDPKVAALRELKEETGVS-- 116
           YR+ VG+ L + + ++F   R D  +P +WQMPQ      ED + AALREL EETGV+  
Sbjct: 11  YRKCVGVVLWDGAGRVFTGQRYDSELP-AWQMPQGGIEDGEDARTAALRELVEETGVAVE 69

Query: 117 SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEK 176
             EVLAE P W+ YD PPE+  ++   W G +KGQAQ+W L+KF G + +IN+   +++ 
Sbjct: 70  KVEVLAETPDWIKYDLPPEIVPRI---WKGRYKGQAQRWVLMKFLGSDADINI---ETKH 123

Query: 177 PEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213
           PEF EW+W+ P  +L+  V FK+ VY++VF  F+  L
Sbjct: 124 PEFSEWRWLEPASVLDSIVPFKRDVYEQVFDAFSDWL 160

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Dinoroseobacter shibae (strain DFL 12) (taxid: 398580)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A4WWV6|RPPH_RHOS5 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rppH PE=3 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 97/156 (62%), Gaps = 14/156 (8%)

Query: 66  YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQ-----NEDPKVAALRELKEETGVSS-- 117
           YR  VGI LIN    IFA  R+D P  +WQMPQ     +E P+ AALREL+EETG+    
Sbjct: 12  YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDADEKPRQAALRELQEETGIPEDL 71

Query: 118 AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 177
            E +A+ P W+TYD PP++   L   WGG ++GQ QKWFL ++ G +E+I   G  +E  
Sbjct: 72  VEFVAKAPEWVTYDLPPDL---LGRVWGGKYRGQRQKWFLFRYLGTDEQI---GIATEHA 125

Query: 178 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213
           EF  W+W+  E+++   V FK+PVY+ V  +F  HL
Sbjct: 126 EFSCWRWIGAEEMVASIVPFKRPVYERVVAMFREHL 161

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) (taxid: 349102)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|B9KN59|RPPH_RHOSK RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rppH PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 96/156 (61%), Gaps = 14/156 (8%)

Query: 66  YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQN-----EDPKVAALRELKEETGVSS-- 117
           YR  VGI LIN    IFA  R+D P  +WQMPQ      E P+ AALREL EETG+ +  
Sbjct: 12  YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAER 71

Query: 118 AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 177
            E +A+ P W+TYD PPE+   L   WGG ++GQ QKWFL ++ G +EE+ +  D +   
Sbjct: 72  VEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEVGIGTDHA--- 125

Query: 178 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213
           EF  W+W+  E+++   V FK+ VY+EV   F PHL
Sbjct: 126 EFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain KD131 / KCTC 12085) (taxid: 557760)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q3IZC1|RPPH_RHOS4 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rppH PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 96/156 (61%), Gaps = 14/156 (8%)

Query: 66  YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQN-----EDPKVAALRELKEETGVSS-- 117
           YR  VGI LIN    IFA  R+D P  +WQMPQ      E P+ AALREL EETG+ +  
Sbjct: 12  YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAER 71

Query: 118 AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 177
            E +A+ P W+TYD PPE+   L   WGG ++GQ QKWFL ++ G +EE+ +  D +   
Sbjct: 72  VEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEVGIGTDHA--- 125

Query: 178 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213
           EF  W+W+  E+++   V FK+ VY+EV   F PHL
Sbjct: 126 EFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A3PMX6|RPPH_RHOS1 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rppH PE=3 SV=1

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 96/156 (61%), Gaps = 14/156 (8%)

Query: 66  YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQN-----EDPKVAALRELKEETGVSS-- 117
           YR  VGI LIN    IFA  R+D P  +WQMPQ      E P+ AALREL EETG+ +  
Sbjct: 12  YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAER 71

Query: 118 AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 177
            E +A+ P W+TYD PPE+   L   WGG ++GQ QKWFL ++ G ++E+ +  D +E  
Sbjct: 72  VEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDDEVGIGTDHAE-- 126

Query: 178 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213
            F  W+W+  E+++   V FK+ VY+EV   F PHL
Sbjct: 127 -FSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) (taxid: 349101)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q5FU29|RPPH_GLUOX RNA pyrophosphohydrolase OS=Gluconobacter oxydans (strain 621H) GN=rppH PE=3 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 90/147 (61%), Gaps = 11/147 (7%)

Query: 66  YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQN-----EDPKVAALRELKEETGVSSAE 119
           YR NVGI L N   K+F A R D+P D WQ PQ      E P+VAALRE+ EE G  +A 
Sbjct: 9   YRPNVGIALFNRDGKLFIARRTDLPGDVWQCPQGGIDEGETPQVAALREMGEEIGTQNAR 68

Query: 120 VLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEF 179
           +LAE   WL+YD P ++   +    GG ++GQ QKWF++ + G++ +I L  D  + PEF
Sbjct: 69  ILAERSGWLSYDLPSDL---IGKALGGRFRGQTQKWFVMGYEGQDSDIRL--DLQDPPEF 123

Query: 180 GEWKWMSPEQILERAVDFKKPVYKEVF 206
             W+W+ P+ +L R + FKK +Y E+ 
Sbjct: 124 DAWEWVDPQAVLNRNLGFKKALYAELI 150

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
225439029	228	PREDICTED: nudix hydrolase 26, chloropla	0.995	0.934	0.677	1e-72
296085800	247	unnamed protein product [Vitis vinifera]	0.925	0.801	0.705	2e-72
224113401	163	predicted protein [Populus trichocarpa]	0.733	0.963	0.814	6e-72
351723651	201	uncharacterized protein LOC100499956 [Gl	0.915	0.975	0.643	6e-72
1888557	199	diadenosine 5',5'''-P1,P4-tetraphosphate	0.906	0.974	0.661	1e-71
224097582	161	predicted protein [Populus trichocarpa]	0.728	0.968	0.807	5e-71
356576388	199	PREDICTED: nudix hydrolase 26, chloropla	0.831	0.894	0.687	4e-70
15228345	216	nudix hydrolase 26 [Arabidopsis thaliana	0.855	0.847	0.670	4e-70
297829614	222	hypothetical protein ARALYDRAFT_317863 [	0.855	0.824	0.668	5e-70
449434516	196	PREDICTED: nudix hydrolase 26, chloropla	0.728	0.795	0.770	7e-70

>gi|225439029|ref|XP_002263671.1| PREDICTED: nudix hydrolase 26, chloroplastic isoform 2 [Vitis vinifera]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/220 (67%), Positives = 169/220 (76%), Gaps = 7/220 (3%)

Query: 1   MALCLSRSFSSYSQLHLSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQNQIC-SSSYSM 59
           M LC  R     S      L     P   S NYP K  K TN PL+  ++    SSS SM
Sbjct: 4   MTLC-QRFLFCTSPFSHQRLQVVANPTLISWNYPCKFQKFTNQPLLCKRSHTAISSSSSM 62

Query: 60  DAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETG 114
           ++PPEGYRRNVG+CLIN SKKIFAASRLDIPD+WQMPQ      EDP+ AA+RELKEETG
Sbjct: 63  ESPPEGYRRNVGVCLINPSKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAMRELKEETG 122

Query: 115 VSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKS 174
           V+SAEVLAEVPYW+TYDFPP+VRE+LK+QWG DWKGQ QKWFLLKFTGKEEEINLLGD++
Sbjct: 123 VASAEVLAEVPYWVTYDFPPQVRERLKNQWGSDWKGQVQKWFLLKFTGKEEEINLLGDET 182

Query: 175 EKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 214
            K EFGEW WMSP+Q++E AVDFKKPVY+EV TVF PHLQ
Sbjct: 183 AKAEFGEWSWMSPDQVVELAVDFKKPVYREVLTVFAPHLQ 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085800|emb|CBI31124.3| unnamed protein product [Vitis vinifera]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/204 (70%), Positives = 165/204 (80%), Gaps = 6/204 (2%)

Query: 17  LSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQNQIC-SSSYSMDAPPEGYRRNVGICLI 75
           +S       P   S NYP K  K TN PL+  ++    SSS SM++PPEGYRRNVG+CLI
Sbjct: 38  ISQFKVVANPTLISWNYPCKFQKFTNQPLLCKRSHTAISSSSSMESPPEGYRRNVGVCLI 97

Query: 76  NSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTY 130
           N SKKIFAASRLDIPD+WQMPQ      EDP+ AA+RELKEETGV+SAEVLAEVPYW+TY
Sbjct: 98  NPSKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAMRELKEETGVASAEVLAEVPYWVTY 157

Query: 131 DFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQI 190
           DFPP+VRE+LK+QWG DWKGQ QKWFLLKFTGKEEEINLLGD++ K EFGEW WMSP+Q+
Sbjct: 158 DFPPQVRERLKNQWGSDWKGQVQKWFLLKFTGKEEEINLLGDETAKAEFGEWSWMSPDQV 217

Query: 191 LERAVDFKKPVYKEVFTVFTPHLQ 214
           +E AVDFKKPVY+EV TVF PHLQ
Sbjct: 218 VELAVDFKKPVYREVLTVFAPHLQ 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113401|ref|XP_002316484.1| predicted protein [Populus trichocarpa] gi|222865524|gb|EEF02655.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 132/162 (81%), Positives = 143/162 (88%), Gaps = 5/162 (3%)

Query: 58  SMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEE 112
           SM++  EGYR+NVGICLIN SKKIFAASRLD+PD+WQMPQ     +EDPKVAA+RELKEE
Sbjct: 2   SMESLSEGYRKNVGICLINPSKKIFAASRLDLPDAWQMPQGGIDESEDPKVAAIRELKEE 61

Query: 113 TGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGD 172
           TGVSSAEVLAE P WLTYDFPPEVREKLKHQWG DWKGQAQKWFLLKFTG EEEINLLGD
Sbjct: 62  TGVSSAEVLAETPSWLTYDFPPEVREKLKHQWGSDWKGQAQKWFLLKFTGNEEEINLLGD 121

Query: 173 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 214
            +EKPEFGEW WMSPEQI++R VDFKKPVYKEV  VF P+ Q
Sbjct: 122 GTEKPEFGEWSWMSPEQIIDRVVDFKKPVYKEVLAVFAPYFQ 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723651|ref|NP_001238566.1| uncharacterized protein LOC100499956 [Glycine max] gi|255627971|gb|ACU14330.1| unknown [Glycine max]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 141/219 (64%), Positives = 163/219 (74%), Gaps = 23/219 (10%)

Query: 1   MALCLSRSFSSYSQLHLSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQNQICSSSYSMD 60
           MALC  R   SYS    S++       F  P YP K  K + LPL         S  +M+
Sbjct: 1   MALC--RFAYSYSPASASTI-------FRFPKYPSKHTKFSLLPL---------SFSTME 42

Query: 61  APPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGV 115
           APPEGYRRNVGICL+N+ KKIFAASRLDIP++WQMPQ      EDP+ AA+REL+EETGV
Sbjct: 43  APPEGYRRNVGICLMNNHKKIFAASRLDIPNAWQMPQGGIDEGEDPRNAAIRELREETGV 102

Query: 116 SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSE 175
           +S EV+AEVPYWLTYDFPP+VREKL  QWG DWKGQAQKWFL KFTG+++EINLLGD +E
Sbjct: 103 NSVEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGTE 162

Query: 176 KPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 214
           K EFGEW W+SPEQ++E AVDFKKPVYKEV  VF PH Q
Sbjct: 163 KAEFGEWSWISPEQVIELAVDFKKPVYKEVLAVFAPHFQ 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1888557|gb|AAC49902.1| diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase [Lupinus angustifolius]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 160/204 (78%), Gaps = 10/204 (4%)

Query: 15  LHLSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICL 74
           + L  L+     NF    YP K  K ++L L     + C SS  MD+PPEGYRRNVGICL
Sbjct: 1   MALCRLVQSPPTNFHFRKYPSKFLKFSSLSLAF---RYCHSS--MDSPPEGYRRNVGICL 55

Query: 75  INSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLT 129
           +N+ KKIFAASRLDIPD+WQMPQ      EDP+ AA+REL+EETGV+SAEV+AEVPYWLT
Sbjct: 56  MNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLT 115

Query: 130 YDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQ 189
           YDFPP+VREKL  QWG DWKGQAQKWFL KFTG+++EINLLGD SEKPEFGEW W++PEQ
Sbjct: 116 YDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQ 175

Query: 190 ILERAVDFKKPVYKEVFTVFTPHL 213
           +++  V+FKKPVYKEV +VF PHL
Sbjct: 176 LIDLTVEFKKPVYKEVLSVFAPHL 199

Source: Lupinus angustifolius

Species: Lupinus angustifolius

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097582|ref|XP_002310996.1| predicted protein [Populus trichocarpa] gi|222850816|gb|EEE88363.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 142/161 (88%), Gaps = 5/161 (3%)

Query: 59  MDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEET 113
           M++PPEGYR+NVGICLI+ SKKIFAASRLD+P++WQMPQ     NEDPKVA +RELKEET
Sbjct: 1   MESPPEGYRKNVGICLISPSKKIFAASRLDMPNAWQMPQGGIDENEDPKVAVIRELKEET 60

Query: 114 GVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDK 173
           GVSSAEVLAE P WL YDFPPEVREKLKHQWG DWKGQAQKWFLLKFTG EEEINLLGD 
Sbjct: 61  GVSSAEVLAEAPSWLAYDFPPEVREKLKHQWGSDWKGQAQKWFLLKFTGNEEEINLLGDG 120

Query: 174 SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 214
           SEKPEFG+W WMSPEQI++ AVDFKKPVYKEV  VF P+ Q
Sbjct: 121 SEKPEFGKWSWMSPEQIIDLAVDFKKPVYKEVLAVFAPYFQ 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576388|ref|XP_003556314.1| PREDICTED: nudix hydrolase 26, chloroplastic-like [Glycine max]

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 153/192 (79%), Gaps = 14/192 (7%)

Query: 28  FTSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRL 87
           F  P YP K  K + LPL         S  +M+APPEGYRRNVGICL+++ KKIFAASRL
Sbjct: 17  FRFPKYPSKHVKFSLLPL---------SFATMEAPPEGYRRNVGICLMSNHKKIFAASRL 67

Query: 88  DIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKH 142
           DIP+SWQMPQ      EDP+ AA+REL+EETGV+SAEV+AEVPYWLTYDFPP+VREKL  
Sbjct: 68  DIPNSWQMPQGGIDEGEDPRNAAIRELREETGVNSAEVIAEVPYWLTYDFPPKVREKLNI 127

Query: 143 QWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVY 202
           QWG DWKGQAQKWFL KFTG+++EINLLGD +EK EFGEW W+SPEQ++E AVDFKKPVY
Sbjct: 128 QWGSDWKGQAQKWFLFKFTGQDQEINLLGDGTEKAEFGEWSWISPEQVIELAVDFKKPVY 187

Query: 203 KEVFTVFTPHLQ 214
           KEV  VF P+ Q
Sbjct: 188 KEVLAVFAPYFQ 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228345|ref|NP_187673.1| nudix hydrolase 26 [Arabidopsis thaliana] gi|75308944|sp|Q9CAF2.1|NUD26_ARATH RecName: Full=Nudix hydrolase 26, chloroplastic; Short=AtNUDT26; AltName: Full=Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical); Flags: Precursor gi|12322789|gb|AAG51386.1|AC011560_18 putative diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; 27094-25792 [Arabidopsis thaliana] gi|13877849|gb|AAK44002.1|AF370187_1 putative diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase [Arabidopsis thaliana] gi|16323514|gb|AAL15251.1| putative diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase [Arabidopsis thaliana] gi|332641414|gb|AEE74935.1| nudix hydrolase 26 [Arabidopsis thaliana]

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 153/194 (78%), Gaps = 11/194 (5%)

Query: 32  NYPHKLPKSTNLPLVHHQNQ------ICSSSYSMDAPPEGYRRNVGICLINSSKKIFAAS 85
           NYP K  K ++LP +H   +            SM++PPEGYRRNVG+CL+NSSKKIF AS
Sbjct: 23  NYPSKPIKFSSLPFLHRCRKSRVSSSSARCCSSMESPPEGYRRNVGVCLMNSSKKIFTAS 82

Query: 86  RLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKL 140
           RLDIP +WQMPQ      EDP+VA +RELKEETGV SAE+LAE P+W+TYDFPP+VREKL
Sbjct: 83  RLDIPSAWQMPQGGIDEGEDPRVAVMRELKEETGVHSAEILAEAPHWITYDFPPDVREKL 142

Query: 141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKP 200
           K +WG DWKGQAQKWFLLKFTGK+EEINLLGD +EKPEFGEW W SP+Q++E AV+FKKP
Sbjct: 143 KVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDGTEKPEFGEWSWTSPDQVVENAVEFKKP 202

Query: 201 VYKEVFTVFTPHLQ 214
           VYKEV + F  HLQ
Sbjct: 203 VYKEVMSAFASHLQ 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829614|ref|XP_002882689.1| hypothetical protein ARALYDRAFT_317863 [Arabidopsis lyrata subsp. lyrata] gi|297328529|gb|EFH58948.1| hypothetical protein ARALYDRAFT_317863 [Arabidopsis lyrata subsp. lyrata]

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 133/199 (66%), Positives = 156/199 (78%), Gaps = 16/199 (8%)

Query: 32  NYPHKLPKSTNLPLVHH-----------QNQICSSSYSMDAPPEGYRRNVGICLINSSKK 80
           NYP K  K ++LP +H            +    SSS SM++PPEGYRRNVG+CL+NSSKK
Sbjct: 24  NYPSKALKFSSLPFLHRCSKSQVSSSSARCCSSSSSSSMESPPEGYRRNVGVCLMNSSKK 83

Query: 81  IFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPE 135
           IF ASRLDIP +WQMPQ      EDP+VA +RELKEETGV SAE++AE P+W+TYDFPP+
Sbjct: 84  IFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEETGVHSAEIVAEAPHWITYDFPPD 143

Query: 136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV 195
           VREKLK +WG DWKGQAQKWFLLKFTGK+EEINLLGD +EKPEFGEW W SP+Q++E AV
Sbjct: 144 VREKLKVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDGTEKPEFGEWSWTSPDQVIEHAV 203

Query: 196 DFKKPVYKEVFTVFTPHLQ 214
           DFKKPVYKEV + F  HLQ
Sbjct: 204 DFKKPVYKEVMSAFASHLQ 222

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434516|ref|XP_004135042.1| PREDICTED: nudix hydrolase 26, chloroplastic-like [Cucumis sativus] gi|449531509|ref|XP_004172728.1| PREDICTED: nudix hydrolase 26, chloroplastic-like [Cucumis sativus]

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 141/161 (87%), Gaps = 5/161 (3%)

Query: 59  MDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEET 113
           M+APPEGYR+NVGICLIN SKKIFAASRLDIPD+WQMPQ      EDP+ AA+REL+EET
Sbjct: 36  MEAPPEGYRKNVGICLINPSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREET 95

Query: 114 GVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDK 173
           GV SA+++AEVPYW+TYDFPP VREKL+ QWG DWKGQAQKWFLLK TG +EEINLLGD 
Sbjct: 96  GVKSADIIAEVPYWVTYDFPPHVREKLRQQWGSDWKGQAQKWFLLKLTGSDEEINLLGDG 155

Query: 174 SEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 214
           +EKPEFGEW WMSPE ++E AVDFKKPVYK+V TVF PHL+
Sbjct: 156 TEKPEFGEWSWMSPEDVVESAVDFKKPVYKDVLTVFKPHLE 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2075840	216	NUDX26 "AT3G10620" [Arabidopsi	0.855	0.847	0.685	4.8e-71
TAIR|locus:2164220	227	NUDX27 "AT5G06340" [Arabidopsi	0.808	0.762	0.578	2.4e-53
TAIR|locus:2202487	175	NUDX25 "AT1G30110" [Arabidopsi	0.700	0.857	0.556	6.9e-47
TIGR_CMR|SPO_3585	161	SPO_3585 "hydrolase, NUDIX fam	0.663	0.881	0.423	2.1e-29
TIGR_CMR|CBU_1551	228	CBU_1551 "MutT/nudix family pr	0.682	0.640	0.375	6.1e-23
UNIPROTKB|Q47Y27	171	rppH "RNA pyrophosphohydrolase	0.654	0.818	0.379	2.1e-20
TIGR_CMR|CPS_3625	171	CPS_3625 "(di)nucleoside polyp	0.654	0.818	0.379	2.1e-20
TIGR_CMR|CJE_0684	156	CJE_0684 "(di)nucleoside polyp	0.640	0.878	0.374	1.5e-19
UNIPROTKB|Q9KU53	172	rppH "RNA pyrophosphohydrolase	0.644	0.802	0.361	1.7e-18
TIGR_CMR|VC_0671	172	VC_0671 "MutT/nudix family pro	0.644	0.802	0.361	1.7e-18

TAIR|locus:2075840 NUDX26 "AT3G10620" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 133/194 (68%), Positives = 159/194 (81%)

Query:    32 NYPHKLPKSTNLPLVHH--QNQICSSSY----SMDAPPEGYRRNVGICLINSSKKIFAAS 85
             NYP K  K ++LP +H   ++++ SSS     SM++PPEGYRRNVG+CL+NSSKKIF AS
Sbjct:    23 NYPSKPIKFSSLPFLHRCRKSRVSSSSARCCSSMESPPEGYRRNVGVCLMNSSKKIFTAS 82

Query:    86 RLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKL 140
             RLDIP +WQMPQ      EDP+VA +RELKEETGV SAE+LAE P+W+TYDFPP+VREKL
Sbjct:    83 RLDIPSAWQMPQGGIDEGEDPRVAVMRELKEETGVHSAEILAEAPHWITYDFPPDVREKL 142

Query:   141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKP 200
             K +WG DWKGQAQKWFLLKFTGK+EEINLLGD +EKPEFGEW W SP+Q++E AV+FKKP
Sbjct:   143 KVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDGTEKPEFGEWSWTSPDQVVENAVEFKKP 202

Query:   201 VYKEVFTVFTPHLQ 214
             VYKEV + F  HLQ
Sbjct:   203 VYKEVMSAFASHLQ 216

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0006753 "nucleoside phosphate metabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

TAIR|locus:2164220 NUDX27 "AT5G06340" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 103/178 (57%), Positives = 132/178 (74%)

Query:    40 STNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN- 98
             S+  PLV     + S + ++++PP GYR+NVGICL++  +KIF AS++ IPD+WQMPQ  
Sbjct:    36 SSPKPLVVLSVALSSPARTVESPPVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGG 95

Query:    99 ----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQK 154
                 ED + AA REL+EETGV+SAE +AE+P WLTYDFP EV++KL  +W   +KGQAQK
Sbjct:    96 ADEGEDLRNAAFRELREETGVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQK 155

Query:   155 WFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPH 212
             WFL KFTGKEEEINLLGD + KPEF  W WM PEQ++E AV FK+PVY+ V   F P+
Sbjct:   156 WFLFKFTGKEEEINLLGDGTAKPEFKVWSWMLPEQVIEHAVYFKRPVYEHVIKQFNPY 213

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2202487 NUDX25 "AT1G30110" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 88/158 (55%), Positives = 117/158 (74%)

Query:    59 MDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEET 113
             M+  P GYR NVG+CLINS   +F ASRL++P +WQMPQ      EDPK AA+REL+EET
Sbjct:     1 MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query:   114 GVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEE--INLLG 171
             GV SAE+++EVP WLTYDFPP V+ K+   WGG+W GQAQKW+L++    E+E  INL  
Sbjct:    61 GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 120

Query:   172 DKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 209
             ++++  EF EWKW  PE+++E+AVD+K+P Y+EV   F
Sbjct:   121 NEADS-EFAEWKWAKPEEVVEQAVDYKRPTYEEVIKTF 157

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0015967 "diadenosine tetraphosphate catabolic process" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0006753 "nucleoside phosphate metabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

TIGR_CMR|SPO_3585 SPO_3585 "hydrolase, NUDIX family, NudH subfamily" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 66/156 (42%), Positives = 97/156 (62%)

Query:    66 YRRNVGICLINSSKKIFAASRLDI-PDSWQMPQ-----NEDPKVAALRELKEETGVSS-- 117
             YR  VG+ L+N    +F   R+D   D+WQMPQ     +EDP  AALREL EETGV++  
Sbjct:    11 YRPCVGVVLMNGDGFVFVGQRMDQNTDAWQMPQGGVDEDEDPFEAALRELWEETGVTADL 70

Query:   118 AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 177
              E++AE   WL YD P ++  ++   W G ++GQ QKW+L +F G++++I+L   ++  P
Sbjct:    71 VEMVAETDGWLPYDLPHDLVPRI---WKGRYRGQEQKWYLFRFLGRDDQIDL---ETGHP 124

Query:   178 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213
             EF  WKW  P++++   V FK+ VY+ V   F PHL
Sbjct:   125 EFSRWKWQDPDRLVAEIVPFKRDVYERVVAAFAPHL 160

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

TIGR_CMR|CBU_1551 CBU_1551 "MutT/nudix family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 59/157 (37%), Positives = 91/157 (57%)

Query:    65 GYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEETGVSSAE 119
             G+R  VG+ ++N   ++    R+  PD+WQ PQ     NE  + A  REL EE G+S  +
Sbjct:    76 GFRLGVGMVIMNRQGELLWGRRVGNPDAWQFPQGGLLPNETLREALNRELDEEVGLSPHD 135

Query:   120 V--LAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 177
             V  L E   W++Y  P + R   +H+ G    GQ QKWFLL+FTGK++ I+L  D   +P
Sbjct:   136 VIYLRETRQWISYRLPKKFRRP-EHR-GPVCIGQRQKWFLLQFTGKDDAISL--DHCSQP 191

Query:   178 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 214
             EF +W+W+     ++  V+FK+ VY++V T F   ++
Sbjct:   192 EFDQWRWVDYWYPVDHVVEFKRDVYQKVLTEFAEFIR 228

GO:0006139 "nucleobase-containing compound metabolic process" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

UNIPROTKB|Q47Y27 rppH "RNA pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 58/153 (37%), Positives = 79/153 (51%)

Query:    64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS- 117
             EGYR NVGI +IN   ++F A R     SWQ PQ      E  +    REL EE G+   
Sbjct:     5 EGYRANVGIVIINDMGQVFWARRYG-QHSWQYPQGGVDEGETAEQTMYRELHEEVGLKPE 63

Query:   118 -AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEK 176
               +++A   +WL Y  P   +  ++H       GQ QKWFLLK T  E  ++LL   S  
Sbjct:    64 HVKIVASTKHWLKYKLP---KRYIRHDSKPVCIGQKQKWFLLKLTAAESSVDLL--HSSH 118

Query:   177 PEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 209
             PEF +W+W+S    + + V FK+ VY+ V   F
Sbjct:   119 PEFDDWRWVSYWYPVRQVVSFKRDVYRMVMKEF 151

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

TIGR_CMR|CPS_3625 CPS_3625 "(di)nucleoside polyphosphate hydrolase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 58/153 (37%), Positives = 79/153 (51%)

Query:    64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS- 117
             EGYR NVGI +IN   ++F A R     SWQ PQ      E  +    REL EE G+   
Sbjct:     5 EGYRANVGIVIINDMGQVFWARRYG-QHSWQYPQGGVDEGETAEQTMYRELHEEVGLKPE 63

Query:   118 -AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEK 176
               +++A   +WL Y  P   +  ++H       GQ QKWFLLK T  E  ++LL   S  
Sbjct:    64 HVKIVASTKHWLKYKLP---KRYIRHDSKPVCIGQKQKWFLLKLTAAESSVDLL--HSSH 118

Query:   177 PEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 209
             PEF +W+W+S    + + V FK+ VY+ V   F
Sbjct:   119 PEFDDWRWVSYWYPVRQVVSFKRDVYRMVMKEF 151

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

TIGR_CMR|CJE_0684 CJE_0684 "(di)nucleoside polyphosphate hydrolase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 58/155 (37%), Positives = 86/155 (55%)

Query:    64 EGYRRNVGICLINSSK----KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETG 114
             + YR NV   +++SS     KIF A R D+ + WQ PQ      E  K A  RELKEE G
Sbjct:     5 KNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGGIDKGESVKNALFRELKEEIG 64

Query:   115 VSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKS 174
                 E++AE P WL+YDFP ++ +K+       + GQ QK+FL++       IN+    +
Sbjct:    65 TDEVEIIAEYPEWLSYDFPSKIVKKMY-----PYDGQIQKYFLVRLK-HGATINI---NT 115

Query:   175 EKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 209
             + PEF +++++S +QI E    FKK +Y +V   F
Sbjct:   116 KHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYF 150

GO:0006139 "nucleobase-containing compound metabolic process" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

UNIPROTKB|Q9KU53 rppH "RNA pyrophosphohydrolase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 56/155 (36%), Positives = 78/155 (50%)

Query:    64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA 118
             +GYR NVGI + N+  ++F A R     SWQ PQ      E P+ A  REL EE G++  
Sbjct:     5 DGYRLNVGIVICNNHGQVFWAKRYG-QHSWQFPQGGIDDGESPEQAMFRELYEEVGLTKK 63

Query:   119 EV--LAEVPYWLTYDFPPEVREKLKHQWGGD--WKGQAQKWFLLKFTGKEEEINLLGDKS 174
             +V  +A   +WL Y  P     K   +W       GQ QKWFLL+    E +IN+   + 
Sbjct:    64 DVKVIATSRHWLRYKLP-----KRLVRWDSQPVCIGQKQKWFLLRLECDESKINM--QRG 116

Query:   175 EKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 209
               PEF  W+W+S    + + V FK+ VY+     F
Sbjct:   117 SSPEFDGWRWVSYWYPVRQVVSFKRDVYRRAMKEF 151

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|VC_0671 VC_0671 "MutT/nudix family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 56/155 (36%), Positives = 78/155 (50%)

Query:    64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA 118
             +GYR NVGI + N+  ++F A R     SWQ PQ      E P+ A  REL EE G++  
Sbjct:     5 DGYRLNVGIVICNNHGQVFWAKRYG-QHSWQFPQGGIDDGESPEQAMFRELYEEVGLTKK 63

Query:   119 EV--LAEVPYWLTYDFPPEVREKLKHQWGGD--WKGQAQKWFLLKFTGKEEEINLLGDKS 174
             +V  +A   +WL Y  P     K   +W       GQ QKWFLL+    E +IN+   + 
Sbjct:    64 DVKVIATSRHWLRYKLP-----KRLVRWDSQPVCIGQKQKWFLLRLECDESKINM--QRG 116

Query:   175 EKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 209
               PEF  W+W+S    + + V FK+ VY+     F
Sbjct:   117 SSPEFDGWRWVSYWYPVRQVVSFKRDVYRRAMKEF 151

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CAF2	NUD26_ARATH	3, ., 6, ., 1, ., 1, 7	0.6701	0.8551	0.8472	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.976
3rd Layer	3.6.1.17	0.991
3rd Layer	3.6.1.52	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033605001	SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (228 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016858001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (405 aa)							•		0.402
	GSVIVG00030263001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (142 aa)							•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	1e-70
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	3e-63
pfam00293	133	pfam00293, NUDIX, NUDIX domain	4e-18
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	3e-14
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	6e-10
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	2e-06
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	7e-06
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	5e-05
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	8e-05
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	6e-04
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	0.004

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score =  211 bits (539), Expect = 1e-70
 Identities = 74/152 (48%), Positives = 99/152 (65%), Gaps = 12/152 (7%)

Query: 65  GYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEETGV--SS 117
            YR NVG+ L N   K+F   R+D P +WQ PQ      EDP+ AALREL+EETG+   S
Sbjct: 1   PYRPNVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDS 60

Query: 118 AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 177
            E++AE+P WL YD PPE++ K+   WGG ++GQ QKWFL +FTG + EI+L     E P
Sbjct: 61  VEIIAEIPDWLRYDLPPELKLKI---WGGRYRGQEQKWFLFRFTGDDSEIDLNAP--EHP 115

Query: 178 EFGEWKWMSPEQILERAVDFKKPVYKEVFTVF 209
           EF EW+W+  E++ +  V FK+PVY+ V   F
Sbjct: 116 EFDEWRWVPLEELPDLIVPFKRPVYEAVLKEF 147

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score =  193 bits (492), Expect = 3e-63
 Identities = 65/162 (40%), Positives = 87/162 (53%), Gaps = 13/162 (8%)

Query: 60  DAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEETG 114
               +GYR NVGI L+N   ++F   R+    SWQ PQ      E P+ A  REL EE G
Sbjct: 1   MIDDDGYRPNVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVG 60

Query: 115 VSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGD 172
           +     E+LAE   WL YD P  +  + K    G ++GQ QKWFLL+ TG + EINL  +
Sbjct: 61  LRPEDVEILAETRDWLRYDLPKRLVRRSK----GVYRGQKQKWFLLRLTGDDSEINL--N 114

Query: 173 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 214
            +  PEF  W+W+S    L++ V FK+ VY+ V   F   L 
Sbjct: 115 TTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEFARLLM 156

Length = 156

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 76.8 bits (189), Expect = 4e-18
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 27/149 (18%)

Query: 66  YRRNVGICLINSSKKIFAASRLDIP---DSWQMPQ-----NEDPKVAALRELKEETGVSS 117
            RR VG+ L+N   ++    R   P     W++P       E P+ AA+REL+EETG+  
Sbjct: 1   RRRAVGVVLLNEDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRV 60

Query: 118 AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 177
              L  +   L Y  P     +  H             FL +  G E E     D     
Sbjct: 61  L--LLLLLGVLEYPAPGRDGGEHVH------------VFLAELLGGEPEPQPNED----- 101

Query: 178 EFGEWKWMSPEQILERAVDFKKPVYKEVF 206
           E  E +W+  E++LE  +  +      + 
Sbjct: 102 EVSEVRWVPLEELLELLLAGEIREVIALL 130

Length = 133

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 67.2 bits (163), Expect = 3e-14
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 18/142 (12%)

Query: 65  GYRRNVGICLIN--SSKKIFAASRLDIPDSWQMPQ------NEDPKVAALRELKEETGVS 116
             R      L+      ++  A R D    W++P        E P+ AA REL+EETG+ 
Sbjct: 8   KVRDVAVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGL- 66

Query: 117 SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEK 176
               + +    L  +FPP          G    G+  + F +        + + G  +  
Sbjct: 67  ---RVKDERLELLGEFPPSPG------DGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPS 117

Query: 177 PEFGEWKWMSPEQILERAVDFK 198
            E  + +W+  +++    +   
Sbjct: 118 EELEDLEWVPLDELAALVLAED 139

Length = 161

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 54.8 bits (132), Expect = 6e-10
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 26/133 (19%)

Query: 68  RNVGICLINSSKKIFAASRLDIP-DSWQMPQ-----NEDPKVAALRELKEETGVSSAEVL 121
             VG  +++   ++    R D P   W++P       E  + AA+RE++EETG+   +V 
Sbjct: 1   VAVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGL---DVD 57

Query: 122 AEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGE 181
                 +              +   + +      FL +  G E             E  E
Sbjct: 58  VLRLLGVYE-----------VESPDEGEHAVVFVFLARLVGGEPT------LLPPDEISE 100

Query: 182 WKWMSPEQILERA 194
            +W++ +++   A
Sbjct: 101 VRWVTLDELPALA 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 19/97 (19%)

Query: 98  NEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFL 157
            ED   AALRE +EETG+ +AE L  V          +VR KLK             +FL
Sbjct: 39  GEDDLEAALRETEEETGI-TAEQLFIVLG-FKETLNYQVRGKLKT----------VTYFL 86

Query: 158 LKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 194
            +    + E+ L        E  +++W+  E+ L+  
Sbjct: 87  AELRP-DVEVKL------SEEHQDYRWLPYEEALKLL 116

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 26/111 (23%)

Query: 90  PDSWQM-----PQNEDPKVAALRELKEETG--VSSAEVLAEVPYWLTYDFPPEVREKLKH 142
              WQ         E P  AA RE+ EETG       +L         +F    R   +H
Sbjct: 27  AGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNGRVWTEH 86

Query: 143 QWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193
                        F       +  + L        E   ++W+ PE+    
Sbjct: 87  ------------PFAFHLPS-DAVVTLDW------EHDAFEWVPPEEAAAL 118

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 16/63 (25%)

Query: 70  VGICLINSSKKI-------FAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGVSS 117
           V +   +   K+                   ++P       EDP+ AA REL+EETG  +
Sbjct: 5   VAVLPYDDDGKVVLVRQYRPPVGGW----LLELPAGLIDPGEDPEEAARRELEEETGYEA 60

Query: 118 AEV 120
            ++
Sbjct: 61  GDL 63

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 33/113 (29%)

Query: 91  DSWQMPQ-----NEDPKVAALRELKEETGVSSAEV---LAEVPYWLTYDFPPEVREKLK- 141
           D W +P+      E P  AA+RE++EETG+  AEV   L  + YW    F    +   K 
Sbjct: 27  DDWSLPKGKLEPGETPPEAAVREVEEETGI-RAEVGDPLGTIRYW----FSSSGKRVHKT 81

Query: 142 -HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193
            H            W+L++  G E             E  E +W+ P++  +R
Sbjct: 82  VH------------WWLMRALGGEFTPQP------DEEVDEVRWLPPDEARDR 116

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 38.2 bits (90), Expect = 6e-04
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 13/73 (17%)

Query: 70  VGICLINSSKKIFAASRLD---IPDSWQMP-----QNEDPKVAALRELKEETG--VSSAE 119
             I +I+   +I  A R     +   W+ P       E P+ A +REL+EE G  V   E
Sbjct: 5   AAI-IIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGE 63

Query: 120 VLAEVPYWLTYDF 132
           +LA V +   Y  
Sbjct: 64  LLATVEH--DYPD 74

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)

Query: 86  RLDIPDSWQ-----MPQNEDPKVAALRELKEETGV 115
           R D PD WQ     + + E P   A+RE+KEETG+
Sbjct: 26  RADDPDFWQSVTGSLEEGETPAQTAIREVKEETGI 60

Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.92
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.91
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.84
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.78
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.77
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.76
PLN02325	144	nudix hydrolase	99.76
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.75
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.75
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.75
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.74
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.74
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.74
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.74
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.73
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.73
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.73
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.73
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.72
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.72
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.71
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.71
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.7
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.7
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.7
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.69
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.69
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.68
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.67
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.67
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.67
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.67
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.67
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.66
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.66
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.66
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.65
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.65
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.65
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.64
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.64
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.64
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.64
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.64
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.64
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.63
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.63
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.63
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.62
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.62
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.62
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.62
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.61
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.61
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.61
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.61
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.61
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.6
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.6
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.59
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.55
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.54
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.52
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.52
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.5
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.46
PRK10707	190	putative NUDIX hydrolase; Provisional	99.44
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.43
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.42
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.38
PRK08999	312	hypothetical protein; Provisional	99.38
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.38
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.31
PLN02709	222	nudix hydrolase	99.28
PLN02791	770	Nudix hydrolase homolog	99.28
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.28
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.27
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.25
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.16
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.14
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.11
PLN03143	291	nudix hydrolase; Provisional	99.11
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.08
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.02
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.96
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.94
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	98.89
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.81
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.8
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.67
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	98.18
PLN02839	372	nudix hydrolase	98.07
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	97.86
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.14
PRK10880	350	adenine DNA glycosylase; Provisional	96.15
COG4112	203	Predicted phosphoesterase (MutT family) [General f	96.02
KOG4195	275	consensus Transient receptor potential-related cha	95.27
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	94.85
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	93.74
PRK13910	289	DNA glycosylase MutY; Provisional	91.51
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	90.82
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	88.46
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	85.01
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	84.36
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	84.03

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.92  E-value=1.4e-23  Score=167.28  Aligned_cols=144  Identities=44%  Similarity=0.824  Sum_probs=115.8

Q ss_pred             CCccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchh
Q 028086           64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        64 ~~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~  136 (214)
                      ..+|++|+++|+|.+|+|||++|.+.++.|++|||     |++.+||.||++||||++.  .++++....++.|++|...
T Consensus         5 ~~~~~~v~~~i~~~~g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~   84 (156)
T PRK00714          5 DGYRPNVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRL   84 (156)
T ss_pred             CCCCCeEEEEEEecCCEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHH
Confidence            36899999999999999999999876699999999     9999999999999999984  4556666667788887654


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhcccc
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL  213 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~~~~  213 (214)
                      ..   . ..+.+.++..+||+++..+....+.++.  .+++|+.+++|++++++.+++.++++.+++++++.|+..|
T Consensus        85 ~~---~-~~~~~~~~~~~~fl~~~~~~~~~~~l~~--~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~~~~~~~  155 (156)
T PRK00714         85 VR---R-SKGVYRGQKQKWFLLRLTGDDSEINLNT--TSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEFARLL  155 (156)
T ss_pred             hh---c-cCCcccCcEEEEEEEEecCCCccccCCC--CCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHHHHHHhh
Confidence            21   1 2345667788999999865444444421  1346999999999999999999999999999999998765

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.91  E-value=1.5e-23  Score=165.09  Aligned_cols=139  Identities=52%  Similarity=1.082  Sum_probs=110.0

Q ss_pred             ccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhh
Q 028086           66 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~  138 (214)
                      +|++|+++|+|.+|+|||++|.+.++.|.+|||     |++.+||+||++||||++.  ..+++....+++|.+++... 
T Consensus         2 ~~~~v~~ii~~~~~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~-   80 (147)
T cd03671           2 YRPNVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELK-   80 (147)
T ss_pred             CCceEEEEEEeCCCEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhh-
Confidence            688999999999999999999887689999999     9999999999999999983  55666666667787765432 


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhh
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF  209 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~  209 (214)
                        .+.+.+.+.++..++|++.+.+...++++..  .+++|+.+++|++++++.+++.++++.++.++++.|
T Consensus        81 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~--~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~  147 (147)
T cd03671          81 --LKIWGGRYRGQEQKWFLFRFTGDDSEIDLNA--PEHPEFDEWRWVPLEELPDLIVPFKRPVYEAVLKEF  147 (147)
T ss_pred             --ccccCCcCCCEEEEEEEEEecCCCccccCCC--CCCCCEeeEEeCCHHHHHHhchhhhHHHHHHHHHhC
Confidence              1233344567788899988875333444431  124699999999999999999999999999988764

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.84  E-value=3.4e-20  Score=145.78  Aligned_cols=133  Identities=20%  Similarity=0.378  Sum_probs=89.8

Q ss_pred             ccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeee-eccceEEecCCchhh
Q 028086           66 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLA-EVPYWLTYDFPPEVR  137 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~-~~~~~~~~~~p~~~~  137 (214)
                      ++.+|+++|+|.+|+|||++|.+.++.|++|||     ||+.+||+||++||||++.  ..+.- .......|.+.+.. 
T Consensus         6 ~~~~v~~vi~~~~~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~-   84 (148)
T PRK09438          6 RPVSVLVVIYTPDLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPHW-   84 (148)
T ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccchhh-
Confidence            577899999999999999998776789999999     9999999999999999985  22110 00011112111100 


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT  210 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~  210 (214)
                         .....++..++..++|++...++ ..+..       +|+.+++|++++++.++.. |..+.+++.++..++
T Consensus        85 ---~~~~~~~~~~~~~~~f~~~~~~~-~~~~~-------~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~  147 (148)
T PRK09438         85 ---RHRYAPGVTRNTEHWFCLALPHE-RPVVL-------TEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRLA  147 (148)
T ss_pred             ---hhccccccCCceeEEEEEecCCC-Ccccc-------CcccceeeCCHHHHHHHhcChhHHHHHHHHHHHhc
Confidence               00011122345668888876532 22222       3889999999999999866 777888887776654

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.5e-18  Score=132.28  Aligned_cols=113  Identities=21%  Similarity=0.324  Sum_probs=78.0

Q ss_pred             cceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~  137 (214)
                      |.+|+++|++.+|+|||++|.+.  +|.|.+|||     |++.+||+||++||||++.  .++++....    .+...  
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~----~~~~~--   75 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDH----IIEEP--   75 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEee----cccCC--
Confidence            78899999999899999998754  489999999     9999999999999999984  333332211    11100  


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHH
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPV  201 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~  201 (214)
                                -.+...++|++...++.  ....    +++|+.+++|++++++.+.+.+..+.+
T Consensus        76 ----------~~~~~~~~f~~~~~~~~--~~~~----~~~E~~~~~W~~~~~l~~~l~~~~~~~  123 (125)
T cd04679          76 ----------PQHWVAPVYLAENFSGE--PRLM----EPDKLLELGWFALDALPQPLTRATRDA  123 (125)
T ss_pred             ----------CCeEEEEEEEEeecCCc--cccC----CCccccEEEEeCHHHCCchhHHHHHHH
Confidence                      01234456666654332  1111    235889999999999987666555443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=5.9e-18  Score=133.06  Aligned_cols=111  Identities=18%  Similarity=0.297  Sum_probs=74.3

Q ss_pred             ccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--c--eeeeeccceEEecCCc
Q 028086           66 YRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--A--EVLAEVPYWLTYDFPP  134 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~--~~l~~~~~~~~~~~p~  134 (214)
                      .+.+|+++|+|.+|+|||++|.+.  +|.|.+|||     ||+.+||+||++||||++.  .  ++++.....+...+..
T Consensus        11 p~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~   90 (144)
T cd03430          11 PLVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFG   90 (144)
T ss_pred             CeEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecccccc
Confidence            367889999999999999999754  489999999     9999999999999999984  2  3444332211111000


Q ss_pred             hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086          135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER  193 (214)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~  193 (214)
                      .          +...+....+|++....+  .+..     .++|+.+++|++++++..+
T Consensus        91 ~----------~~~~~~~~~~~~~~~~~~--~~~~-----~~~e~~~~~W~~~~el~~~  132 (144)
T cd03430          91 D----------DFSTHYVVLGYVLKLSSN--ELLL-----PDEQHSEYQWLTSDELLAD  132 (144)
T ss_pred             C----------CCccEEEEEEEEEEEcCC--cccC-----CchhccEeEEecHHHHhcC
Confidence            0          001122345566655432  2221     3458999999999999864

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.76  E-value=7.8e-18  Score=128.42  Aligned_cols=119  Identities=24%  Similarity=0.506  Sum_probs=82.1

Q ss_pred             cceEEEEEEecC---CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086           67 RRNVGICLINSS---KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        67 ~~~v~vvI~~~~---g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~  136 (214)
                      +++++++|++.+   ++|||++|.+. +.|.+|||     ||+.+||.||++||||++..  ..++.    +.|.++.. 
T Consensus         1 ~~~a~~ii~~~~~~~~~vLl~~~~~~-~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~----~~~~~~~~-   74 (131)
T cd03673           1 VLAAGGVVFRGSDGGIEVLLIHRPRG-DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGT----IRYWFSSS-   74 (131)
T ss_pred             CeeEEEEEEEccCCCeEEEEEEcCCC-CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEE----EEEeccCC-
Confidence            457788888775   89999999874 89999999     99999999999999999842  22222    22322211 


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHH
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVF  206 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l  206 (214)
                               +.......++|.+......  ...    .+++|+.+++|++++++.++.. +..+.++++++
T Consensus        75 ---------~~~~~~~~~~~~~~~~~~~--~~~----~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~  130 (131)
T cd03673          75 ---------GKRVHKTVHWWLMRALGGE--FTP----QPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL  130 (131)
T ss_pred             ---------CCCcceEEEEEEEEEcCCC--ccc----CCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhh
Confidence                     1123455677777765432  221    1245899999999999988766 55666666554

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>PLN02325 nudix hydrolase

Probab=99.76  E-value=6.2e-18  Score=133.07  Aligned_cols=124  Identities=17%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             CCCCCCccceEEEEEEecCCcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEe
Q 028086           60 DAPPEGYRRNVGICLINSSKKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTY  130 (214)
Q Consensus        60 ~~~~~~~~~~v~vvI~~~~g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~  130 (214)
                      .......+.+|+++|++ +|+|||++|.+.+  |.|.+|||     ||+.+||+||++||||++.  .++++.....+. 
T Consensus         2 ~~~~~~p~~~v~~vi~~-~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~-   79 (144)
T PLN02325          2 ETGEPIPRVAVVVFLLK-GNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFL-   79 (144)
T ss_pred             CCCCCCCeEEEEEEEEc-CCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceee-
Confidence            44555668888888876 4799999998643  79999999     9999999999999999984  334443222111 


Q ss_pred             cCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHH
Q 028086          131 DFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVY  202 (214)
Q Consensus       131 ~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~  202 (214)
                      +.+.             ..+....+|.+...+......    ..+++|+.+++|++++++......-.+.++
T Consensus        80 ~~~~-------------~~~~i~~~f~~~~~~~~~~~~----~~e~~e~~~~~W~~~d~Lp~~~~~p~~~~~  134 (144)
T PLN02325         80 EEPK-------------PSHYVTVFMRAVLADPSQVPQ----NLEPEKCYGWDWYEWDNLPEPLFWPLEKLV  134 (144)
T ss_pred             cCCC-------------CcEEEEEEEEEEECCCCCCCC----cCCchhcCceEEEChHHCChhhhHHHHHHH
Confidence            1110             123345566666543221111    123456788999999999875543333333

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.1e-17  Score=127.58  Aligned_cols=113  Identities=23%  Similarity=0.379  Sum_probs=73.4

Q ss_pred             ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhh
Q 028086           68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      .+|+++|+|.+|+|||+||...+|.|.+|||     ||+.+||+||++||||++.  ..++...    .+.+.+...   
T Consensus         3 ~~v~~~i~~~~~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~----~~~~~~~~~---   75 (125)
T cd04696           3 VTVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQ----EAIFSEEFH---   75 (125)
T ss_pred             cEEEEEEECCCCCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEE----EEeccCCCC---
Confidence            5678889998999999998655689999999     9999999999999999974  2322211    111111110   


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHH
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPV  201 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~  201 (214)
                            ...+...+.|++...+.  ++..      .+|+.+++|++++++.++.. +..+.+
T Consensus        76 ------~~~~~~~~~~~~~~~~~--~~~~------~~e~~~~~W~~~~el~~~~~~~~~~~~  123 (125)
T cd04696          76 ------KPAHFVLFDFFARTDGT--EVTP------NEEIVEWEWVTPEEALDYPLNSFTRLL  123 (125)
T ss_pred             ------CccEEEEEEEEEEecCC--cccC------CcccceeEEECHHHHhcCCCCHHHHHH
Confidence                  00122233344444322  2222      24889999999999987755 444433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=9e-18  Score=128.61  Aligned_cols=102  Identities=24%  Similarity=0.421  Sum_probs=70.0

Q ss_pred             eEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086           69 NVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK  139 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~  139 (214)
                      +|+++|++++|+|||++|...  +|.|.+|||     |++.+||.||++||||++.  ...++.....  +.+...    
T Consensus         3 av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~--~~~~~~----   76 (130)
T cd04681           3 AVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNT--YPYGGM----   76 (130)
T ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecce--eeeCCc----
Confidence            678888999999999999764  489999999     9999999999999999984  3333322211  111110    


Q ss_pred             hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh
Q 028086          140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL  191 (214)
Q Consensus       140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~  191 (214)
                              -.....++|++.+.+..  ...     +.+|+.+++|++++++.
T Consensus        77 --------~~~~~~~~~~~~~~~~~--~~~-----~~~e~~~~~W~~~~el~  113 (130)
T cd04681          77 --------EYDTLDLFFVCQVDDKP--IVK-----APDDVAELKWVVPQDIE  113 (130)
T ss_pred             --------eeEEEEEEEEEEeCCCC--CcC-----ChHHhheeEEecHHHCC
Confidence                    01223346677765321  111     23588999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.75  E-value=1.5e-17  Score=133.21  Aligned_cols=118  Identities=15%  Similarity=0.284  Sum_probs=77.1

Q ss_pred             cceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc----eeeeeccceEEecCCch
Q 028086           67 RRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSA----EVLAEVPYWLTYDFPPE  135 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~----~~l~~~~~~~~~~~p~~  135 (214)
                      ..+|.++|++++|+|||+||.+.  +|.|++|||     ||+++||+||++||||++..    ++++..    .+.+...
T Consensus        17 ~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~----~~~~~~~   92 (159)
T PRK15434         17 LISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVW----QHFYDDN   92 (159)
T ss_pred             eEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEE----Eeecccc
Confidence            45788888888899999999754  389999999     99999999999999999831    223221    1111110


Q ss_pred             hhhhhccccCCCc-cCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc--cCCHHHH
Q 028086          136 VREKLKHQWGGDW-KGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV--DFKKPVY  202 (214)
Q Consensus       136 ~~~~l~~~~~~~~-~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~--~~~~~~~  202 (214)
                      ..       .+.+ .+...++|.++..++  ++.+     .++|+.+++|++++++.....  +..+.++
T Consensus        93 ~~-------~~~~~~~~i~~~f~~~~~~g--~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~~~  148 (159)
T PRK15434         93 FS-------GTDFTTHYVVLGFRLRVAEE--DLLL-----PDEQHDDYRWLTPDALLASDNVHANSRAYF  148 (159)
T ss_pred             cC-------CCccceEEEEEEEEEEecCC--cccC-----ChHHeeEEEEEeHHHhhhccccCHHHHHHh
Confidence            00       0000 122345566665543  3333     235899999999999987533  5555554

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.74  E-value=1.3e-17  Score=126.96  Aligned_cols=122  Identities=29%  Similarity=0.521  Sum_probs=84.9

Q ss_pred             ccceEEEEEEecCCcEEEEeecCCC----CCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchh
Q 028086           66 YRRNVGICLINSSKKIFAASRLDIP----DSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~~----g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~  136 (214)
                      +|++|+++|++.+|+|||++|.+.+    +.|.+|||     ||+.+||+||+.||||++......  ...+.+..+...
T Consensus         1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~--~~~~~~~~~~~~   78 (134)
T PF00293_consen    1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLEL--LGLFSYPSPSGD   78 (134)
T ss_dssp             EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEE--EEEEEEEETTTE
T ss_pred             CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccccc--ceeeeecccCCC
Confidence            4789999999999999999998874    89999999     999999999999999998411111  122222222111


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCH-HHHHHH
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKK-PVYKEV  205 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~-~~~~~~  205 (214)
                                 ..+...++|.+...........     +..|+.+++|++++++.++...... .+++.+
T Consensus        79 -----------~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~  132 (134)
T PF00293_consen   79 -----------PEGEIVIFFIAELPSEQSEIQP-----QDEEISEVKWVPPDELLELLLNGRIRKIIPWL  132 (134)
T ss_dssp             -----------SSEEEEEEEEEEEEEEESECHT-----TTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHH
T ss_pred             -----------cccEEEEEEEEEEeCCccccCC-----CCccEEEEEEEEHHHhhhchhCcchhhhhccc
Confidence                       0134567777777654323333     2239999999999999988774433 355544

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.7e-17  Score=127.07  Aligned_cols=117  Identities=26%  Similarity=0.330  Sum_probs=75.1

Q ss_pred             ccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhh
Q 028086           66 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~  138 (214)
                      ++++|++++++.+++|||++|... +.|.+|||     ||+.+||+||++||||++.  ...++.......|..++.   
T Consensus         6 ~~~~~~~~v~~~~~~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~---   81 (132)
T cd04677           6 ILVGAGVILLNEQGEVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNG---   81 (132)
T ss_pred             cccceEEEEEeCCCCEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCC---
Confidence            467888888998899999999874 89999999     9999999999999999984  223322211111111111   


Q ss_pred             hhccccCCCccCce-EEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHH
Q 028086          139 KLKHQWGGDWKGQA-QKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPV  201 (214)
Q Consensus       139 ~l~~~~~~~~~~~~-~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~  201 (214)
                             +. .... ..+|+......  .+..     ..+|+.+++|++++++.+++.+..+.+
T Consensus        82 -------~~-~~~~~~~~~~~~~~~~--~~~~-----~~~e~~~~~W~~~~e~~~~~~~~~~~~  130 (132)
T cd04677          82 -------DD-EQYIVTLYYVTKVFGG--KLVP-----DGDETLELKFFSLDELPELINPQHKEM  130 (132)
T ss_pred             -------Cc-EEEEEEEEEEEeccCC--cccC-----CCCceeeEEEEChhHCccchhHHHHHh
Confidence                   00 1122 23333333211  2122     345889999999999988776644443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.74  E-value=3.7e-17  Score=128.15  Aligned_cols=109  Identities=21%  Similarity=0.258  Sum_probs=76.9

Q ss_pred             CccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCch
Q 028086           65 GYRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPE  135 (214)
Q Consensus        65 ~~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~  135 (214)
                      .+.++|+++|+|.+++|||++|...  ++.|++|||     ||+++||+||++||||++.  ...++.    +.+.++.+
T Consensus        11 ~~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~----~~~~~~~~   86 (142)
T cd04700          11 VEARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGT----YLGRFDDG   86 (142)
T ss_pred             eeeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEE----EEEEcCCC
Confidence            4578899999998999999988653  489999999     9999999999999999984  222221    11222221


Q ss_pred             hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                                   .....++|++...+....+.      ..+|+.+++|++++++.+++..
T Consensus        87 -------------~~~~~~~f~~~~~~~~~~~~------~~~E~~~~~w~~~~el~~~~~~  128 (142)
T cd04700          87 -------------VLVLRHVWLAEPEGQTLAPK------FTDEIAEASFFSREDVAQLYAQ  128 (142)
T ss_pred             -------------cEEEEEEEEEEecCCccccC------CCCCEEEEEEECHHHhhhcccc
Confidence                         12234667777653322222      1258999999999999988764

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.5e-17  Score=124.04  Aligned_cols=111  Identities=16%  Similarity=0.141  Sum_probs=74.4

Q ss_pred             eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhccc
Q 028086           69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQ  143 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~~  143 (214)
                      +|.++|+|++|+|||++|... +.|.+|||     ||+++||+||++||||+......... ..+.+.+. .        
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~~-~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~-~~~~~~~~-~--------   70 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTYG-PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELL-GVYYHSAS-G--------   70 (120)
T ss_pred             ceEEEEECCCCeEEEEEECCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceE-EEEecCCC-C--------
Confidence            578889999999999998764 59999999     99999999999999999853111111 11111111 0        


Q ss_pred             cCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHH
Q 028086          144 WGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVY  202 (214)
Q Consensus       144 ~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~  202 (214)
                           .....++|.+.......  .     .+.+|+.+++|++++++.+.+.+..+..+
T Consensus        71 -----~~~~~~~f~~~~~~~~~--~-----~~~~E~~~~~w~~~~~l~~~~~~~~~~~~  117 (120)
T cd04680          71 -----SWDHVIVFRARADTQPV--I-----RPSHEISEARFFPPDALPEPTTPATRRRI  117 (120)
T ss_pred             -----CceEEEEEEecccCCCc--c-----CCcccEEEEEEECHHHCcccCChHHHHHh
Confidence                 12234555555543211  1     13458999999999999987666544443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=7.7e-17  Score=123.18  Aligned_cols=118  Identities=24%  Similarity=0.466  Sum_probs=76.5

Q ss_pred             cceEEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      +.+|+++|+|++++|||++|... ++.|.+|||     ||+.+||.||++||||+.. +..... .. .+.++..     
T Consensus         2 ~~~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~-~~~~~~-~~-~~~~~~~-----   73 (127)
T cd04670           2 TVGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDT-EFVSVV-GF-RHAHPGA-----   73 (127)
T ss_pred             eeEEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCc-ceeEEE-EE-EecCCCC-----
Confidence            56788999999999999987653 589999999     9999999999999999984 222111 11 1111111     


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHH
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFT  207 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~  207 (214)
                              .+....+|++.+......+..     +++|+.+++|++++++.+.  ++...+.+.+++
T Consensus        74 --------~~~~~~~~~~~~~~~~~~~~~-----~~~E~~~~~w~~~~el~~~--~~~~~~~~~~~~  125 (127)
T cd04670          74 --------FGKSDLYFICRLKPLSFDINF-----DTSEIAAAKWMPLEEYISQ--PITSEVNRLILD  125 (127)
T ss_pred             --------cCceeEEEEEEEccCcCcCCC-----ChhhhheeEEEcHHHHhcc--hhHHHHHHHHHh
Confidence                    123345566665432212222     3458889999999999654  344445554443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=3.9e-17  Score=125.13  Aligned_cols=115  Identities=20%  Similarity=0.295  Sum_probs=78.1

Q ss_pred             ceEEEEEEec--CCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086           68 RNVGICLINS--SKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        68 ~~v~vvI~~~--~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~  137 (214)
                      +.|.|++++.  +++|||++|.+. +|.|.+|||     |++.+||+||++||||+..  ..++........+.+...  
T Consensus         2 ~~~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~--   79 (129)
T cd04664           2 RSVLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN--   79 (129)
T ss_pred             cEEEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCC--
Confidence            5678888888  899999999875 799999999     9999999999999999984  333332211111111111  


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHH
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPV  201 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~  201 (214)
                                ..+...++|++...+.. ...      .++|+.+++|++++++.++.. +..+.+
T Consensus        80 ----------~~~~~~~~f~~~~~~~~-~~~------~~~E~~~~~W~~~~e~~~~~~~~~~~~~  127 (129)
T cd04664          80 ----------GRVWTEHPFAFHLPSDA-VVT------LDWEHDAFEWVPPEEAAALLLWESNRRA  127 (129)
T ss_pred             ----------ceEEEEeEEEEEcCCCC-ccc------CCccccccEecCHHHHHHHHcChhhhhh
Confidence                      01234567777765432 111      235889999999999988766 444433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.73  E-value=7e-17  Score=123.52  Aligned_cols=117  Identities=23%  Similarity=0.385  Sum_probs=79.2

Q ss_pred             cceEEEEEEecCC---cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086           67 RRNVGICLINSSK---KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        67 ~~~v~vvI~~~~g---~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~  136 (214)
                      +++++++|++.++   +|||++|.+  +.|.+|||     ||+.+||+||++||||++..  ..++....  .+.++.. 
T Consensus         2 ~~~~g~vi~~~~~~~~~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~~~~~~-   76 (130)
T cd03428           2 ERSAGAIIYRRLNNEIEYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKE--TLNYQVR-   76 (130)
T ss_pred             ceEEEEEEEEecCCCceEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhcccee--EEEcccc-
Confidence            4567888876554   799999886  89999999     99999999999999999842  22211111  1222110 


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHH
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVF  206 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l  206 (214)
                                 ..+...++|++..... ..+..+      +|+.+++|++++++.++.. +..+.+++++.
T Consensus        77 -----------~~~~~~~~f~~~~~~~-~~~~~~------~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~  129 (130)
T cd03428          77 -----------GKLKTVTYFLAELRPD-VEVKLS------EEHQDYRWLPYEEALKLLTYEDLKAVLDKAH  129 (130)
T ss_pred             -----------CcceEEEEEEEEeCCC-Cccccc------cceeeEEeecHHHHHHHcCchhHHHHHHHhh
Confidence                       1234556777776521 122221      4889999999999998876 55666776653

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.73  E-value=1.2e-17  Score=131.65  Aligned_cols=108  Identities=19%  Similarity=0.344  Sum_probs=71.2

Q ss_pred             ceEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhc
Q 028086           68 RNVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLK  141 (214)
Q Consensus        68 ~~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~  141 (214)
                      ++++++|+|++ ++|||++|... +.|++|||     ||+.+||+||++||||++...... . .  .|.  ..      
T Consensus         2 p~~gaii~~~~~~~vLLvr~~~~-~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~-~--~~~--~~------   68 (145)
T cd03672           2 PVYGAIILNEDLDKVLLVKGWKS-KSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-K-D--DYI--EL------   68 (145)
T ss_pred             CeeEEEEEeCCCCEEEEEEecCC-CCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-c-c--eee--ec------
Confidence            46788888875 69999998764 69999999     999999999999999998533221 0 1  111  00      


Q ss_pred             cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC
Q 028086          142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF  197 (214)
Q Consensus       142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~  197 (214)
                           .+.+...++|++...........    ...+|+.+++|++++++.++....
T Consensus        69 -----~~~~~~~~~f~~~~~~~~~~~~~----~~~~E~~~~~Wv~~~el~~~~~~~  115 (145)
T cd03672          69 -----IIRGQNVKLYIVPGVPEDTPFEP----KTRKEISKIEWFDIKDLPTKKNKK  115 (145)
T ss_pred             -----ccCCcEEEEEEEecCCCCcccCc----CChhhhheEEEeeHHHhhhhhhhc
Confidence                 01133445555543322111111    123589999999999999876543

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=7.2e-17  Score=125.67  Aligned_cols=123  Identities=19%  Similarity=0.248  Sum_probs=77.8

Q ss_pred             cceEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeec--cceE-EecCCch
Q 028086           67 RRNVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEV--PYWL-TYDFPPE  135 (214)
Q Consensus        67 ~~~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~--~~~~-~~~~p~~  135 (214)
                      +..|+++|+|++ ++|||++|.+ .|.|.+|||     |++++||.||++||||++...  .....  .... .+..+..
T Consensus         2 ~~~~~~~v~~~~~~~vLLv~r~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   80 (138)
T cd03674           2 HFTASAFVVNPDRGKVLLTHHRK-LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKR   80 (138)
T ss_pred             cEEEEEEEEeCCCCeEEEEEEcC-CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCC
Confidence            467888999987 8999999876 489999999     999999999999999997322  11100  0111 1111110


Q ss_pred             hhhhhccccCCCccC-ceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHH
Q 028086          136 VREKLKHQWGGDWKG-QAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVF  206 (214)
Q Consensus       136 ~~~~l~~~~~~~~~~-~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l  206 (214)
                                +.... .....|++....+.  ....    ..+|+.+++|++++++.++.. +..+.+++++|
T Consensus        81 ----------~~~~~~~~~~~y~~~~~~~~--~~~~----~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~  137 (138)
T cd03674          81 ----------GVPGHLHLDLRFLAVAPADD--VAPP----KSDESDAVRWFPLDELASLELPEDVRRLVEKAL  137 (138)
T ss_pred             ----------CCCCcEEEEEEEEEEccCcc--ccCC----CCCcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence                      00001 12334566544322  2110    235888999999999976654 45567777765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.72  E-value=7e-17  Score=125.89  Aligned_cols=117  Identities=17%  Similarity=0.337  Sum_probs=70.6

Q ss_pred             ceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeee--e--ccceE-EecCC
Q 028086           68 RNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLA--E--VPYWL-TYDFP  133 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~--~--~~~~~-~~~~p  133 (214)
                      +.+.+.|++.+|+|||+||...    +|.|++|||     ||+.+||+||++||||++. .+..  .  ....+ ...|+
T Consensus         4 r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~-~~~~~~~~~~~~~~~~~~~~   82 (141)
T PRK15472          4 RTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL-LLTEITPWTFRDDIRTKTYA   82 (141)
T ss_pred             eeEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCce-eeeeeccccccccceeEEec
Confidence            4555556666899999998653    489999999     9999999999999999973 1111  0  00000 01122


Q ss_pred             chhhhhhccccCCCccCceEE-EEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHH
Q 028086          134 PEVREKLKHQWGGDWKGQAQK-WFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYK  203 (214)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~-~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~  203 (214)
                      ++.            ..+..+ ++++.......++.+      .+|+.+++|++++++.++.. +..+.++.
T Consensus        83 ~~~------------~~~~~~~~~~~~~~~~~~~~~~------~~E~~~~~w~~~~el~~l~~~~~~~~~~~  136 (141)
T PRK15472         83 DGR------------KEEIYMIYLIFDCVSANRDVKI------NEEFQDYAWVKPEDLVHYDLNVATRKTLR  136 (141)
T ss_pred             CCC------------ceeEEEEEEEEEeecCCCcccC------ChhhheEEEccHHHhccccccHHHHHHHH
Confidence            111            111112 222333222223333      25899999999999998766 44444443

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1e-16  Score=121.39  Aligned_cols=117  Identities=18%  Similarity=0.283  Sum_probs=76.6

Q ss_pred             cceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccc-eEEecCCchhhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPY-WLTYDFPPEVRE  138 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~-~~~~~~p~~~~~  138 (214)
                      |++|+++|+|++|+|||++|... |.|.+|||     |++.+||.||++||||++.  .++++.... ...+.++.+.  
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~--   78 (129)
T cd04676           2 LPGVTAVVRDDEGRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGD--   78 (129)
T ss_pred             cceEEEEEECCCCeEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCC--
Confidence            67889999998899999999875 89999999     9999999999999999973  222211111 0112222211  


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc-CCHHHH
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD-FKKPVY  202 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~~  202 (214)
                               ..+...++|++...++  ....     ..+|..+++|++++++.++..+ ..+.++
T Consensus        79 ---------~~~~~~~~~~~~~~~~--~~~~-----~~~e~~~~~w~~~~el~~~~~~~~~~~~~  127 (129)
T cd04676          79 ---------VRQYLDITFRCRVVGG--ELRV-----GDDESLDVAWFDPDGLPPLLMHPSMRLRI  127 (129)
T ss_pred             ---------cEEEEEEEEEEEeeCC--eecC-----CCCceeEEEEEChhhCccccCCHhHHHHh
Confidence                     1123445555555432  2211     2347889999999999987663 334443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.3e-16  Score=122.18  Aligned_cols=107  Identities=25%  Similarity=0.382  Sum_probs=74.7

Q ss_pred             cceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~  137 (214)
                      |.+|+++|+|.+|+|||++|...  ++.|.+|||     ||+.+||.||++||||++..  ..++....    .++..  
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~----~~~~~--   75 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTND----VFEEE--   75 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeE----EeCCC--
Confidence            67899999999899999999852  589999999     99999999999999999842  22222111    11110  


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER  193 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~  193 (214)
                                ..+....+|.+...........    .+.+|+.+++|++++++.++
T Consensus        76 ----------~~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          76 ----------GKHYVTIFVKAEVDDGEAEPNK----MEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             ----------CcEEEEEEEEEEeCCCCcccCC----CCCceeCceEEeCHHHCCCc
Confidence                      1133456677776543222221    13457889999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.4e-16  Score=120.29  Aligned_cols=108  Identities=20%  Similarity=0.346  Sum_probs=70.7

Q ss_pred             eEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhh
Q 028086           69 NVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~  138 (214)
                      +|.++|++ +|+|||++|.+.   +|.|.+|||     ||+.+||+||++||||+...  .+ ... ..+.+.++.    
T Consensus         2 ~v~~vi~~-~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~-~~~-~~~~~~~~~----   74 (120)
T cd04683           2 AVYVLLRR-DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDL-RLA-HTMHRRTED----   74 (120)
T ss_pred             cEEEEEEE-CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhhe-EEE-EEEEecCCC----
Confidence            56666665 689999998753   489999999     99999999999999999842  22 111 111111111    


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK  198 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~  198 (214)
                               ..+...++|++....+.  +..    .+++|+.+++|++++++...+.++.
T Consensus        75 ---------~~~~~~~~f~~~~~~~~--~~~----~~~~e~~~~~W~~~~~l~~~~~~~~  119 (120)
T cd04683          75 ---------IESRIGLFFTVRRWSGE--PRN----CEPDKCAELRWFPLDALPDDTVDYV  119 (120)
T ss_pred             ---------CceEEEEEEEEEeecCc--ccc----CCCCcEeeEEEEchHHCcchhcccc
Confidence                     01234456666543221  111    1345888999999999988777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.70  E-value=2.4e-16  Score=119.66  Aligned_cols=109  Identities=17%  Similarity=0.229  Sum_probs=72.4

Q ss_pred             eEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086           69 NVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK  139 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~  139 (214)
                      +|.++|+++ ++|||++|.+.  ++.|.+|||     |++.+||+||++||||++.  ...++....  .+..+...   
T Consensus         2 ~~~~ii~~~-~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~--~~~~~~~~---   75 (128)
T cd04684           2 GAYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASR--YFYSPDGD---   75 (128)
T ss_pred             eeEEEEEeC-CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEE--EEECCCCC---
Confidence            567777775 89999999875  489999999     9999999999999999983  223332211  11111110   


Q ss_pred             hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                             ...+...++|.+........ ..    ...+|+.+++|++++++.....
T Consensus        76 -------~~~~~~~~~f~~~~~~~~~~-~~----~~~~e~~~~~W~~~~~l~~~~~  119 (128)
T cd04684          76 -------YDAHHLCVFYDARVVGGALP-VQ----EPGEDSHGAAWLPLDEAIERLL  119 (128)
T ss_pred             -------eeccEEEEEEEEEEecCccc-cC----CCCCCceeeEEECHHHhhccCC
Confidence                   01244567777777643211 01    1235788999999999985544

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.70  E-value=2.2e-16  Score=122.06  Aligned_cols=116  Identities=18%  Similarity=0.293  Sum_probs=77.5

Q ss_pred             eEEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhcc
Q 028086           69 NVGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKH  142 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~  142 (214)
                      +|.+.|++.+++|||++|... +|.|.+|||     ||+++||+||++||||+....+ ... ....+.+          
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~-~~l-~~~~~~~----------   69 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNI-RYV-GSQPWPF----------   69 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeee-EEE-eecCCCC----------
Confidence            567777787799999999765 489999999     9999999999999999984221 111 0011111          


Q ss_pred             ccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc---Cc--cCCHHHHHHHHHhh
Q 028086          143 QWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER---AV--DFKKPVYKEVFTVF  209 (214)
Q Consensus       143 ~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~---~~--~~~~~~~~~~l~~~  209 (214)
                            .....++|++....+  .+..     +++|+.+++|++++++.++   +.  +-.+.+.+.++..+
T Consensus        70 ------~~~~~~~f~~~~~~~--~~~~-----~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~~~~~~  128 (131)
T cd03429          70 ------PSSLMLGFTAEADSG--EIVV-----DDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEAW  128 (131)
T ss_pred             ------CceEEEEEEEEEcCC--cccC-----CchhhhccEeecHHHHhhcccCCccCCCcchHHHHHHHHH
Confidence                  122345666666532  2222     3458899999999999875   33  44455566555543

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=3.6e-16  Score=120.47  Aligned_cols=114  Identities=27%  Similarity=0.343  Sum_probs=75.7

Q ss_pred             ecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhccccCCCcc
Q 028086           76 NSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWK  149 (214)
Q Consensus        76 ~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~  149 (214)
                      +.+++|||++|... +|.|.+|||     ||+.+||+||++||||++...+.........|..+..             .
T Consensus        11 ~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~-------------~   77 (131)
T cd04695          11 DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDN-------------R   77 (131)
T ss_pred             CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCc-------------e
Confidence            45679999998863 589999999     9999999999999999985332111000111221110             1


Q ss_pred             CceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086          150 GQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF  209 (214)
Q Consensus       150 ~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~  209 (214)
                      .....+|++...... .+..      .+|+.+++|++++++.++.. +..+.+++.+-..|
T Consensus        78 ~~~~~~f~~~~~~~~-~~~~------~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~~~  131 (131)
T cd04695          78 ILMAPVFVGFVPPHQ-EVVL------NHEHTEYRWCSFAEALELAPFPGQRALYDHVWRYF  131 (131)
T ss_pred             EEEEEEEEEEecCCC-cccc------CchhcccEecCHHHHHHhcCChhHHHHHHHHHhhC
Confidence            122345555543221 2222      24899999999999998877 78888988887654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.69  E-value=2.6e-16  Score=121.65  Aligned_cols=109  Identities=24%  Similarity=0.240  Sum_probs=75.9

Q ss_pred             cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~  138 (214)
                      +++|++++++++++|||++|.+.   ++.|.+|||     |++.+||+||++||||++...+.. . ..  +.+..+   
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~-~~--~~~~~~---   74 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEK-L-GS--FYPSPG---   74 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEE-E-ee--EecCCc---
Confidence            57889999999999999987543   368999999     999999999999999998532211 1 11  111111   


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                               ......++|++...+....+..     +++|+.+++|++++++.+++..
T Consensus        75 ---------~~~~~~~~~~~~~~~~~~~~~~-----~~~E~~~~~w~~~~el~~~~~~  118 (137)
T cd03424          75 ---------FSDERIHLFLAEDLSPGEEGLL-----DEGEDIEVVLVPLDEALELLAD  118 (137)
T ss_pred             ---------ccCccEEEEEEEcccccccCCC-----CCCCeeEEEEecHHHHHHHHHc
Confidence                     1233456677766543211222     3468999999999999987764

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=6.2e-16  Score=117.80  Aligned_cols=104  Identities=21%  Similarity=0.325  Sum_probs=69.6

Q ss_pred             EEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhccc
Q 028086           70 VGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQ  143 (214)
Q Consensus        70 v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~~  143 (214)
                      |+++|++++|+|||++|.+. .+.|.+|||     ||+.+||+||++||||++. .+.... .  .+.++          
T Consensus         3 ~~~ii~~~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~-~~~~~~-~--~~~~~----------   68 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDV-RVEEIF-L--IVNQN----------   68 (121)
T ss_pred             eEEEEEeCCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeE-eeeeEE-E--EEeeC----------
Confidence            57778887799999998754 378999999     9999999999999999984 221111 1  11111          


Q ss_pred             cCCCccCceEEEEEEEEeCCcceeeccC-C---CCCcCceeeEEEeChhHHhhcCc
Q 028086          144 WGGDWKGQAQKWFLLKFTGKEEEINLLG-D---KSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       144 ~~~~~~~~~~~~fl~~~~~~~~~i~l~~-~---~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                            +...++|.++..++.  +.... .   ..++.++.+++|++++++..+..
T Consensus        69 ------~~~~~~f~~~~~~g~--~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~  116 (121)
T cd04669          69 ------GRTEHYFLARVISGK--LGLGVGEEFERQSDDNQYHPVWVDLDQLETIPL  116 (121)
T ss_pred             ------CcEEEEEEEEEECCe--ecCCCchhhcccCCCCceEEEEEEHHHcccCCC
Confidence                  223567787766442  22110 0   01134567899999999987644

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=5.5e-16  Score=117.85  Aligned_cols=101  Identities=25%  Similarity=0.360  Sum_probs=67.6

Q ss_pred             eEEEEEEecCCcEEEEeecCC-----CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086           69 NVGICLINSSKKIFAASRLDI-----PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~-----~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~  136 (214)
                      +++++++ ++|+|||++|...     +|.|.+|||     |++++||+||++||||++..  .+..    ...+.++.  
T Consensus         3 v~~~~~~-~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~----~~~~~~~~--   75 (122)
T cd04682           3 VALALLI-GDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPW----FRVYPSAS--   75 (122)
T ss_pred             eEEEEEE-cCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccce----eEecccCC--
Confidence            3444444 4599999999754     489999999     99999999999999999842  1111    11122110  


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                                  .....++|++...... ....     +.+|+.+++|++++++.+..
T Consensus        76 ------------~~~~~~~f~~~~~~~~-~~~~-----~~~E~~~~~W~~~~el~~~~  115 (122)
T cd04682          76 ------------PPGTEHVFVVPLTARE-DAIL-----FGDEGQALRLMTVEEFLAHE  115 (122)
T ss_pred             ------------CCceEEEEEEEEecCC-Cccc-----cCchhheeecccHHHHhhcc
Confidence                        1334567777665432 1222     34689999999999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=3.7e-16  Score=122.37  Aligned_cols=111  Identities=19%  Similarity=0.309  Sum_probs=74.8

Q ss_pred             ccceEEEEEEecC---CcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCc--cee--eeeccceE
Q 028086           66 YRRNVGICLINSS---KKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSS--AEV--LAEVPYWL  128 (214)
Q Consensus        66 ~~~~v~vvI~~~~---g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~--~~~--l~~~~~~~  128 (214)
                      |+++|.++|+|.+   ++||+++|+..    ||.|++ |||     ||+.+||+||++||||++.  ..+  ++..    
T Consensus         1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~----   76 (144)
T cd04692           1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTF----   76 (144)
T ss_pred             CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEE----
Confidence            5789999999987   89999999763    589999 588     9999999999999999973  122  2221    


Q ss_pred             EecCC-chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          129 TYDFP-PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       129 ~~~~p-~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      .+.+. .+.          .......++|++........+.+     +++|+.+++|++++++.+++.
T Consensus        77 ~~~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~-----~~~E~~~~~W~~~~el~~~~~  129 (144)
T cd04692          77 KIEYDHIGK----------LIDREFHHVYLYELKVPLEEFTL-----QKEEVAGVVLIPLDEFAELLE  129 (144)
T ss_pred             EEeccccCC----------CccceEEEEEEEeccCChhhcCC-----ChhHhheEEEECHHHHHHHHH
Confidence            12211 100          00123445666665431112222     345899999999999987764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=8.4e-16  Score=117.74  Aligned_cols=98  Identities=21%  Similarity=0.309  Sum_probs=68.5

Q ss_pred             eEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086           69 NVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK  139 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~  139 (214)
                      .|+++++|.+|+|||++|.+.  ++.|.+|||     |++.+||+||++||||++.  .+.+..      +..+      
T Consensus         2 ~~~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~------~~~~------   69 (123)
T cd04671           2 IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSV------EEQG------   69 (123)
T ss_pred             EEEEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEE------EccC------
Confidence            467888898999999998754  489999999     9999999999999999984  222211      1100      


Q ss_pred             hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh
Q 028086          140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL  191 (214)
Q Consensus       140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~  191 (214)
                               .+...++|.++..++  .+...  ..+..|+.+++|++++++.
T Consensus        70 ---------~~~~~~~f~a~~~~g--~~~~~--~~~~~e~~~~~W~~~~el~  108 (123)
T cd04671          70 ---------GSWFRFVFTGNITGG--DLKTE--KEADSESLQARWYSNKDLP  108 (123)
T ss_pred             ---------CeEEEEEEEEEEeCC--eEccC--CCCCcceEEEEEECHHHCC
Confidence                     123455677776543  22221  1234578899999999993

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.67  E-value=6.4e-16  Score=124.01  Aligned_cols=108  Identities=23%  Similarity=0.347  Sum_probs=74.0

Q ss_pred             ccceEEEEEEecCCcEEEEeecCC----CCCeecC-CC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEec--
Q 028086           66 YRRNVGICLINSSKKIFAASRLDI----PDSWQMP-QN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYD--  131 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-gG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~--  131 (214)
                      ++++|+++|+|++|+|||++|.+.    ||.|.+| ||     |++++||+||++||||+...  .++   ...+.|.  
T Consensus        29 ~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~---~~~~~~~~~  105 (165)
T cd02885          29 LHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELV---LPRFRYRAP  105 (165)
T ss_pred             ceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhc---cceEEEEEE
Confidence            388999999999999999998763    5899997 56     99999999999999999842  222   0112222  


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      ++...           ......++|.+...+.   ...     +.+|+.+++|++++++.+++.
T Consensus       106 ~~~~~-----------~~~~i~~~f~~~~~~~---~~~-----~~~Ev~~~~w~~~~el~~~~~  150 (165)
T cd02885         106 DDGGL-----------VEHEIDHVFFARADVT---LIP-----NPDEVSEYRWVSLEDLKELVA  150 (165)
T ss_pred             cCCCc-----------eeeEEEEEEEEEeCCC---CCC-----CccceeEEEEECHHHHHHHHH
Confidence            11111           1122345565554321   111     345899999999999988766

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.67  E-value=1.4e-15  Score=117.17  Aligned_cols=103  Identities=18%  Similarity=0.183  Sum_probs=67.3

Q ss_pred             EEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhc
Q 028086           70 VGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLK  141 (214)
Q Consensus        70 v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~  141 (214)
                      |+++| ..++++||++|.+. ++.|.+|||     ||+.+||.||++||||++.  ..++..    +.+..+...     
T Consensus         3 v~~ii-~~~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~----~~~~~~~~~-----   72 (134)
T cd03675           3 VAAVV-ERDGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGI----YQWTAPDSD-----   72 (134)
T ss_pred             EEEEE-EECCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEE----EEeecCCCC-----
Confidence            44444 56789999998764 379999999     9999999999999999984  222221    222222110     


Q ss_pred             cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                             .....++|++...+......      ..+|+.++.|++++++.++..
T Consensus        73 -------~~~~~~~f~~~~~~~~~~~~------~~~e~~~~~w~~~~el~~~~~  113 (134)
T cd03675          73 -------TTYLRFAFAAELLEHLPDQP------LDSGIVRAHWLTLEEILALAA  113 (134)
T ss_pred             -------eeEEEEEEEEEECCCCCCCC------CCCCceeeEEEeHHHHHhhhh
Confidence                   11123456666543211111      234789999999999998874

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=1.3e-15  Score=116.57  Aligned_cols=115  Identities=19%  Similarity=0.159  Sum_probs=71.9

Q ss_pred             cceEEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~  138 (214)
                      |.+|+++|++ +++|||++|.+. ++.|.+|||     |++++||+||++||||+..  .++....    .+......  
T Consensus         1 r~~a~~iv~~-~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~----~~~~~~~~--   73 (128)
T cd04687           1 RNSAKAVIIK-NDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVR----EYIGHNPT--   73 (128)
T ss_pred             CcEEEEEEEE-CCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEE----EEeccCcc--
Confidence            5677888776 679999998754 368999999     9999999999999999984  2222211    11110000  


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                          .+.+...+...++|++....+.. ....  ....+|..+++|++++++.++..
T Consensus        74 ----~~~~~~~~~i~~~f~~~~~~~~~-~~~~--~~~~~~~~~~~W~~~~~l~~~~~  123 (128)
T cd04687          74 ----SELPGHFHQVELMFECKIKSGTP-AKTP--SKPDPNQIGVEWLKLKELGDIPL  123 (128)
T ss_pred             ----ccCCCceeEEEEEEEEEECCCCc-cccc--CCCCCCEEeeEEEcHHHhCcccc
Confidence                00111124455777777754321 0110  01223556899999999987655

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=6.3e-16  Score=118.47  Aligned_cols=104  Identities=25%  Similarity=0.362  Sum_probs=70.8

Q ss_pred             ceEEEEEEecCCcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhh
Q 028086           68 RNVGICLINSSKKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~  137 (214)
                      +++.++|+|.+|+|||++|...    +|.|++ |||     |++.+||+||++||||++...+.. . .  .|.+.... 
T Consensus         1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~-~-~--~~~~~~~~-   75 (126)
T cd04697           1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTP-L-G--LFYYDTDG-   75 (126)
T ss_pred             CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEE-e-e--EEEecCCC-
Confidence            4688999999999999998743    588999 577     999999999999999998543211 1 1  12221110 


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                                 .....++|++...+   ++.+     +.+|+.+++|++++++.+++.
T Consensus        76 -----------~~~~~~~f~~~~~~---~~~~-----~~~E~~~~~w~~~~el~~~~~  114 (126)
T cd04697          76 -----------NRVWGKVFSCVYDG---PLKL-----QEEEVEEITWLSINEILQFKE  114 (126)
T ss_pred             -----------ceEEEEEEEEEECC---CCCC-----CHhHhhheEEcCHHHHHHHhh
Confidence                       01123455555432   2222     245889999999999988654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=1.5e-15  Score=114.56  Aligned_cols=106  Identities=23%  Similarity=0.317  Sum_probs=67.8

Q ss_pred             eEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086           69 NVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK  139 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~  139 (214)
                      +|+++|++ +++|||++|.+.  ++.|.+|||     |++++||.||++||||++.  ...++..    .+.++...   
T Consensus         2 ~v~~ii~~-~~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~----~~~~~~~~---   73 (122)
T cd04673           2 AVGAVVFR-GGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVV----DVIERDAA---   73 (122)
T ss_pred             cEEEEEEE-CCEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEE----EEeeccCC---
Confidence            46677776 479999998764  478999999     9999999999999999984  2333322    11111100   


Q ss_pred             hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                           .+...+...+.|.+....+  ++.      ..+|+.+++|++++++.++..
T Consensus        74 -----~~~~~~~~~~~~~~~~~~~--~~~------~~~E~~~~~w~~~~el~~~~~  116 (122)
T cd04673          74 -----GRVEFHYVLIDFLCRYLGG--EPV------AGDDALDARWVPLDELAALSL  116 (122)
T ss_pred             -----CccceEEEEEEEEEEeCCC--ccc------CCcccceeEEECHHHHhhCcC
Confidence                 0000122334444444322  221      235889999999999988765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=1.5e-15  Score=115.55  Aligned_cols=107  Identities=20%  Similarity=0.281  Sum_probs=70.1

Q ss_pred             cceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK  139 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~  139 (214)
                      +.+|+++|+++ ++|||++|.. .+.|.+|||     ||+.+||+||++||||+..  ..+++.... ..+.++.     
T Consensus         2 ~~~v~~~i~~~-~~vLL~~~~~-~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~-~~~~~~~-----   73 (123)
T cd04672           2 KVDVRAAIFKD-GKILLVREKS-DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDR-NKHHPPP-----   73 (123)
T ss_pred             cceEEEEEEEC-CEEEEEEEcC-CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEecc-ccccCCC-----
Confidence            56788888875 8999999876 589999999     9999999999999999974  122221110 0111100     


Q ss_pred             hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                             ...+....+|++.....  .+..      .+|..+++|++++++.++..+
T Consensus        74 -------~~~~~~~~~f~~~~~~~--~~~~------~~E~~~~~W~~~~el~~l~~~  115 (123)
T cd04672          74 -------QPYQVYKLFFLCEILGG--EFKP------NIETSEVGFFALDDLPPLSEK  115 (123)
T ss_pred             -------CceEEEEEEEEEEecCC--cccC------CCceeeeEEECHHHCcccccC
Confidence                   00112334555665432  2222      248899999999999877653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.65  E-value=1.3e-15  Score=117.66  Aligned_cols=114  Identities=21%  Similarity=0.268  Sum_probs=74.1

Q ss_pred             eEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086           69 NVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK  139 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~  139 (214)
                      +..++|.+ +|+|||++|...  ++.|.+|||     |++.+||+||++||||++.  ..+++.    +.+..+..    
T Consensus         3 ~~~~~i~~-~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~----~~~~~~~~----   73 (137)
T cd03427           3 TTLCFIKD-PDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGI----IKFPFPGE----   73 (137)
T ss_pred             EEEEEEEE-CCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEE----EEEEcCCC----
Confidence            34455555 489999999875  589999999     9999999999999999983  233322    22222210    


Q ss_pred             hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHH
Q 028086          140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFT  207 (214)
Q Consensus       140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~  207 (214)
                              ......++|++....+  .+..      .+|..+++|++++++..+.. +..+.+++.+++
T Consensus        74 --------~~~~~~~~f~~~~~~~--~~~~------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  126 (137)
T cd03427          74 --------EERYGVFVFLATEFEG--EPLK------ESEEGILDWFDIDDLPLLPMWPGDREWLPLMLE  126 (137)
T ss_pred             --------CcEEEEEEEEECCccc--ccCC------CCccccceEEcHhhcccccCCCCcHHHHHHHhC
Confidence                    0122344444443322  2221      23556899999999987655 666778877775

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=2.4e-15  Score=114.78  Aligned_cols=111  Identities=17%  Similarity=0.278  Sum_probs=71.3

Q ss_pred             eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhc
Q 028086           69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLK  141 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~  141 (214)
                      .|.++|++ +++|||++|.. .+.|.+|||     |++.+||.||++||||++.  ...++.....  +.+..       
T Consensus         3 ~v~~vi~~-~~~vLl~~~~~-~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~--~~~~~-------   71 (126)
T cd04688           3 RAAAIIIH-NGKLLVQKNPD-ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENI--FTYNG-------   71 (126)
T ss_pred             EEEEEEEE-CCEEEEEEeCC-CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEe--eccCC-------
Confidence            34555555 45999999876 589999999     9999999999999999983  3333332211  11111       


Q ss_pred             cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                           ...+...++|++...++...........+..|+.+++|++++++..+..
T Consensus        72 -----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~  120 (126)
T cd04688          72 -----KPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKL  120 (126)
T ss_pred             -----cccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCcc
Confidence                 1124456788888765432110000001345899999999999986544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=2.5e-15  Score=114.51  Aligned_cols=104  Identities=14%  Similarity=0.207  Sum_probs=66.8

Q ss_pred             ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhh
Q 028086           68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      ..|+++|+ .+|+|||++|.+ .+.|.+|||     ||+.+||+||++||||++.  ..+++....  .+..+.      
T Consensus         2 ~~~~~vi~-~~~~vLlv~~~~-~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~--~~~~~~------   71 (125)
T cd04689           2 LRARAIVR-AGNKVLLARVIG-QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIEN--QWHEKG------   71 (125)
T ss_pred             eEEEEEEE-eCCEEEEEEecC-CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEee--eeccCC------
Confidence            45677776 478999999876 479999999     9999999999999999984  333332211  111111      


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL  191 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~  191 (214)
                            ...+...++|++...........    ..++|+.+++|++++++.
T Consensus        72 ------~~~~~~~~~f~~~~~~~~~~~~~----~~~~e~~~~~W~~~~el~  112 (125)
T cd04689          72 ------VRTHEINHIFAVESSWLASDGPP----QADEDHLSFSWVPVSDLS  112 (125)
T ss_pred             ------ceEEEEEEEEEEEcccccccCCc----cCccceEEEEEccHHHcc
Confidence                  11233445666665432111111    134578999999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.64  E-value=1.8e-15  Score=123.57  Aligned_cols=113  Identities=17%  Similarity=0.300  Sum_probs=76.5

Q ss_pred             CCCccceEEEEEEecCCcEEEEeecCC----CCCeecC-CC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEec-
Q 028086           63 PEGYRRNVGICLINSSKKIFAASRLDI----PDSWQMP-QN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYD-  131 (214)
Q Consensus        63 ~~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-gG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~-  131 (214)
                      ...++++|+++|++.+|+|||+||...    ||.|.+| ||     ||+++||+||++||||++...+.... ..+.|. 
T Consensus        30 ~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~  108 (184)
T PRK03759         30 DTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVL-PDFRYRA  108 (184)
T ss_pred             CCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccccccc-ceEEEEE
Confidence            345788999999999999999998642    5788876 45     99999999999999999853322111 112221 


Q ss_pred             -CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          132 -FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       132 -~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                       ++++.           ......++|++...+   .+.+     +++|+.+++|++++++.+++.
T Consensus       109 ~~~~~~-----------~~~~~~~vf~~~~~~---~~~~-----~~~Ev~~~~W~~~~el~~~i~  154 (184)
T PRK03759        109 TDPNGI-----------VENEVCPVFAARVTS---ALQP-----NPDEVMDYQWVDPADLLRAVD  154 (184)
T ss_pred             ecCCCc-----------eeeEEEEEEEEEECC---CCCC-----ChhHeeeEEEECHHHHHHHHH
Confidence             12111           112344566666542   2222     345899999999999988765

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=1.3e-15  Score=115.35  Aligned_cols=99  Identities=26%  Similarity=0.388  Sum_probs=65.5

Q ss_pred             EEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhh
Q 028086           70 VGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        70 v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      |+++|++ +++|||+||...    +|.|++|||     ||+++||+||++||||++...+.    ....+.++..     
T Consensus         3 v~~vi~~-~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~----~l~~~~~~~~-----   72 (117)
T cd04691           3 VVGVLFS-DDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYT----YLCSLYHPTS-----   72 (117)
T ss_pred             EEEEEEE-CCEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccce----EEEEEeccCC-----
Confidence            4555555 489999998643    489999999     99999999999999999842221    1111111111     


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                              .....++|++....+  .+.       .+|+.+++|++++++.....
T Consensus        73 --------~~~~~~~~~~~~~~~--~~~-------~~E~~~~~W~~~~~l~~~~~  110 (117)
T cd04691          73 --------ELQLLHYYVVTFWQG--EIP-------AQEAAEVHWMTANDIVLASE  110 (117)
T ss_pred             --------CeEEEEEEEEEEecC--CCC-------cccccccEEcCHHHcchhhh
Confidence                    123456666654432  221       24888999999999976543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.64  E-value=5.2e-15  Score=113.94  Aligned_cols=112  Identities=21%  Similarity=0.326  Sum_probs=72.7

Q ss_pred             EEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086           70 VGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK  139 (214)
Q Consensus        70 v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~  139 (214)
                      +.++|++.+|+|||++|.+.   +|.|++|||     |++.+||+||++||||++.  ..++..    +.+.+...    
T Consensus         6 ~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~----~~~~~~~~----   77 (135)
T PRK10546          6 VVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVAS----HQREVSGR----   77 (135)
T ss_pred             EEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEE----EEEecCCc----
Confidence            44445567789999998653   389999999     8999999999999999983  222221    12221110    


Q ss_pred             hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086          140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV  208 (214)
Q Consensus       140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~  208 (214)
                                ....++|.+....+  ++.       ..|+.+++|++++++.++.. +..+.+++.+++.
T Consensus        78 ----------~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  128 (135)
T PRK10546         78 ----------RIHLHAWHVPDFHG--ELQ-------AHEHQALVWCTPEEALRYPLAPADIPLLEAFMAL  128 (135)
T ss_pred             ----------EEEEEEEEEEEecC--ccc-------ccccceeEEcCHHHcccCCCCcCcHHHHHHHHHh
Confidence                      11223344433221  111       13677899999999998766 6667788877664

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=2.1e-15  Score=116.46  Aligned_cols=110  Identities=18%  Similarity=0.227  Sum_probs=68.4

Q ss_pred             eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcce---eeeeccceEEecCCchhhhhh
Q 028086           69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAE---VLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~---~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      +|+++|++ +|+|||+++.+. +.|.+|||     |++.+||+||++||||+....   .++.........++..     
T Consensus         2 ~~~~ii~~-~~~vLLv~~~~~-~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~-----   74 (131)
T cd04686           2 AVRAIILQ-GDKILLLYTKRY-GDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDA-----   74 (131)
T ss_pred             cEEEEEEE-CCEEEEEEEcCC-CcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCC-----
Confidence            56777776 589999998763 78999999     999999999999999997422   2232211111111111     


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER  193 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~  193 (214)
                            ...+...++|++........+.++.  .+.++..+++|++++++.+.
T Consensus        75 ------~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~W~~~~ea~~~  119 (131)
T cd04686          75 ------DIFHMISYYYLCEVDAELGAQQLED--YEAELGMKPIWINIHEAIEH  119 (131)
T ss_pred             ------ceeEEEEEEEEEEEcCCcCCcccch--hhHhcCCCcEEecHHHHHHh
Confidence                  0123346778888764322222320  11112245899999999754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=1.5e-15  Score=116.08  Aligned_cols=103  Identities=27%  Similarity=0.357  Sum_probs=67.0

Q ss_pred             eEEEEEEecCCcEEEEeecCC----CCCeecC-CC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086           69 NVGICLINSSKKIFAASRLDI----PDSWQMP-QN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-gG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~  136 (214)
                      +|.+++++++|+|||++|...    +|.|++| ||     |++ +||+||++||||++..  .+.    ....+.++...
T Consensus         2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~----~~~~~~~~~~~   76 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELR----PLFRYFFEAEG   76 (127)
T ss_pred             eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcE----EEEEEEeecCC
Confidence            578888999999999998753    4899998 77     999 9999999999999842  221    11122221100


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                                   ....++|.+...  ...+..     +.+|+.+++|++++++.+++..
T Consensus        77 -------------~~~~~~~~~~~~--~~~~~~-----~~~E~~~~~w~~~~el~~~~~~  116 (127)
T cd04693          77 -------------FDDYYLFYADVE--IGKLIL-----QKEEVDEVKFVSKDEIDGLIGH  116 (127)
T ss_pred             -------------eEEEEEEEecCc--cccccc-----CHHHhhhEEEeCHHHHHHHHhc
Confidence                         111122222211  112222     3458999999999999988763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.63  E-value=2.5e-15  Score=119.88  Aligned_cols=109  Identities=23%  Similarity=0.351  Sum_probs=74.0

Q ss_pred             CCCccceEEEEEEecCCcEEEEeecCC----CCCeecC-CC-----CCHHHHHHHHHHHHhCCCccee-eeeccceEEe-
Q 028086           63 PEGYRRNVGICLINSSKKIFAASRLDI----PDSWQMP-QN-----EDPKVAALRELKEETGVSSAEV-LAEVPYWLTY-  130 (214)
Q Consensus        63 ~~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-gG-----Es~~eAA~REl~EETGl~~~~~-l~~~~~~~~~-  130 (214)
                      ...++++|+++|+|.+|+|||+||+..    ||.|++| ||     |  .+||+||++|||||+.... +... ..+.| 
T Consensus        23 ~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~-~~~~~~   99 (158)
T TIGR02150        23 ETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVL-PRFSYR   99 (158)
T ss_pred             CCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEc-ceEEEE
Confidence            467799999999999999999999763    6999997 45     8  4999999999999984221 1111 11122 


Q ss_pred             -cCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          131 -DFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       131 -~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                       .++++             .....++|.+...+   .+.+     +.+|+.+++|++++++.+++.
T Consensus       100 ~~~~~g-------------~~~~~~~f~~~~~~---~~~~-----~~~Ev~~~~W~~~~el~~~~~  144 (158)
T TIGR02150       100 ARDAWG-------------EHELCPVFFARAPV---PLNP-----NPEEVAEYRWVSLEELKEILK  144 (158)
T ss_pred             EecCCC-------------cEEEEEEEEEecCC---cccC-----ChhHeeeEEEeCHHHHHHHHh
Confidence             22111             12234555555432   2222     245999999999999998776

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.63  E-value=3.2e-15  Score=115.73  Aligned_cols=104  Identities=20%  Similarity=0.365  Sum_probs=71.3

Q ss_pred             cCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCc-ceeeeec-cceEEecCCchhhhhhccccCCCc
Q 028086           77 SSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSS-AEVLAEV-PYWLTYDFPPEVREKLKHQWGGDW  148 (214)
Q Consensus        77 ~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~-~~~l~~~-~~~~~~~~p~~~~~~l~~~~~~~~  148 (214)
                      +++++||+++... .|.|.||||     ||+.+||+||++||||++. ..+++.. ...+.|.++....       .+..
T Consensus        11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~-------~~~~   83 (132)
T cd04661          11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR-------NEGI   83 (132)
T ss_pred             cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccc-------cccC
Confidence            3568999998753 379999999     9999999999999999973 2333322 2334555553320       0112


Q ss_pred             cCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          149 KGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       149 ~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      .+...++|.++..++.  +.+.      +|+.+++|++++++.+++.
T Consensus        84 ~~~~~~~f~~~~~~g~--~~~~------~e~~~~~W~~~~el~~~l~  122 (132)
T cd04661          84 VGAKVFFFKARYMSGQ--FELS------QNQVDFKWLAKEELQKYLN  122 (132)
T ss_pred             cccEEEEEEEEEecCc--cccC------CCcceeEecCHHHHHhhcC
Confidence            3456788888876542  2322      4889999999999998654

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=2.6e-15  Score=112.94  Aligned_cols=105  Identities=19%  Similarity=0.312  Sum_probs=67.9

Q ss_pred             eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcce-eeeeccceEEecCCchhhhhhcc
Q 028086           69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAE-VLAEVPYWLTYDFPPEVREKLKH  142 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~-~l~~~~~~~~~~~p~~~~~~l~~  142 (214)
                      .|++++++.+|++||++|.+ .+.|.+|||     |++++||+||++||||++... .+... .  .+.++...      
T Consensus         2 ~~~~~v~~~~~~vLl~~r~~-~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~-~--~~~~~~~~------   71 (118)
T cd04690           2 IAAALILVRDGRVLLVRKRG-TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYL-G--TFRAPAAN------   71 (118)
T ss_pred             eEEEEEEecCCeEEEEEECC-CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEE-E--EEeccccc------
Confidence            35677778889999999876 489999999     999999999999999998422 01111 1  11111100      


Q ss_pred             ccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          143 QWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       143 ~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                        .+. .....++|++....   .+.      ..+|+.+++|++++++.+...
T Consensus        72 --~~~-~~~~~~~f~~~~~~---~~~------~~~e~~~~~W~~~~e~~~~~~  112 (118)
T cd04690          72 --EPG-VDVRATVYVAELTG---EPV------PAAEIEEIRWVDYDDPADDRL  112 (118)
T ss_pred             --CCC-cEEEEEEEEEcccC---CcC------CCchhhccEEecHHHcccccc
Confidence              000 12244556665542   222      234888999999999865544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=6.3e-15  Score=112.83  Aligned_cols=105  Identities=22%  Similarity=0.280  Sum_probs=69.7

Q ss_pred             eEEEEEEecC---CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--c-eeeeeccceEEecCCchhh
Q 028086           69 NVGICLINSS---KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--A-EVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        69 ~v~vvI~~~~---g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~-~~l~~~~~~~~~~~p~~~~  137 (214)
                      .+++++++.+   ++|||++|.+. +.|.+|||     ||+.+||+||++||||++.  . ..++.    +.+.++..  
T Consensus         2 ~~g~v~~~~~~~~~~vLLv~~~~~-~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~----~~~~~~~~--   74 (122)
T cd04666           2 QAGAIPYRETGGEVEVLLVTSRRT-GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGR----FEYRKRSK--   74 (122)
T ss_pred             EEEEEEEEEcCCceEEEEEEecCC-CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEE----EEeeecCC--
Confidence            3566666543   68999998764 89999999     9999999999999999983  2 33332    22222210  


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                              +...+...++|++...+..   ..    .+..|+.+++|++++++.+++.
T Consensus        75 --------~~~~~~~~~~f~~~~~~~~---~~----~~~~e~~~~~W~~~~ea~~~~~  117 (122)
T cd04666          75 --------NRPPRCEVAVFPLEVTEEL---DE----WPEMHQRKRKWFSPEEAALLVE  117 (122)
T ss_pred             --------CCCceEEEEEEEEEEeccc---cC----CcccCceEEEEecHHHHHHhcC
Confidence                    0012335577777765421   11    1224678899999999988765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=4.8e-15  Score=115.19  Aligned_cols=111  Identities=24%  Similarity=0.391  Sum_probs=73.9

Q ss_pred             ceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceee---eeccceEEecCCch
Q 028086           68 RNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVL---AEVPYWLTYDFPPE  135 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l---~~~~~~~~~~~p~~  135 (214)
                      ++++++|++.+|+|||+++.+.    ++.|.+|||     |++.+||.||++||||+....+.   ......  +.++..
T Consensus         1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~--f~~~~~   78 (133)
T cd04685           1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAA--FTFLGV   78 (133)
T ss_pred             CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEE--EEecCc
Confidence            4688999999999999998653    479999999     99999999999999999852322   211111  222211


Q ss_pred             hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086          136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER  193 (214)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~  193 (214)
                                  ..++..+||+++....+.... .....+.+++.+++|++++++.+.
T Consensus        79 ------------~~~~~~~~f~~~~~~~~~~~~-~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          79 ------------DGRQEERFFLARTPRTEPSPA-GWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             ------------cceeeEEEEEEEcCCccccCC-CCChhhhhhcccccCCCHHHHhhC
Confidence                        123456788888754221111 001122345678999999999875

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=6.5e-15  Score=115.92  Aligned_cols=114  Identities=25%  Similarity=0.362  Sum_probs=70.6

Q ss_pred             eEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc------eeeeeccceEEecCC
Q 028086           69 NVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSSA------EVLAEVPYWLTYDFP  133 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~~------~~l~~~~~~~~~~~p  133 (214)
                      +|+++++|.+++|||+||...    +|.|.+|||     |++.+||+||++||||+...      ++++..    .+.|+
T Consensus         3 ~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~----~~~~~   78 (143)
T cd04694           3 GVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLW----ESVYP   78 (143)
T ss_pred             EEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeee----ccccc
Confidence            567788899999999999743    589999999     99999999999999999842      222221    11222


Q ss_pred             chhhhhhccccCCCccCceEEEEEEEEeCCc--ceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKE--EEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~--~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      ....      .+.........||+.......  ..+.+.   ..++|+.+++|++++++.+++.
T Consensus        79 ~~~~------~~~~~~~~~~~y~~~~~~~~~~~~~~~~~---~~~~Ev~~~~Wv~~~~a~~~~~  133 (143)
T cd04694          79 PLLS------RGLPKRHHIVVYILVKSSETHQQLQARLQ---PDPNEVSAAAWLDKSLAKAVVS  133 (143)
T ss_pred             cccC------CCcccceeEEEEEEEEecccccccccccc---CChhhccceEeeCHHHHHHHHH
Confidence            2110      000001223334333332211  111111   1346999999999999988765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=6.8e-15  Score=110.22  Aligned_cols=96  Identities=21%  Similarity=0.424  Sum_probs=65.6

Q ss_pred             EEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhccccCCC
Q 028086           73 CLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGD  147 (214)
Q Consensus        73 vI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~  147 (214)
                      +|...+++|||++|..  |.|.+|||     |++.+||.||++||||++...+.    ....+.  .             
T Consensus         5 ~i~~~~~~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~----~~~~~~--~-------------   63 (112)
T cd04667           5 VICRRGGRVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLL----YLFHVD--G-------------   63 (112)
T ss_pred             EEEecCCEEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceE----EEEEEe--C-------------
Confidence            3445678999999875  89999999     99999999999999999843221    111111  1             


Q ss_pred             ccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC
Q 028086          148 WKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF  197 (214)
Q Consensus       148 ~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~  197 (214)
                       .....++|++.+.... ...      ..+|+.+++|++++++.++..+.
T Consensus        64 -~~~~~~~f~~~~~~~~-~~~------~~~e~~~~~W~~~~el~~~~~~~  105 (112)
T cd04667          64 -GSTRHHVFVASVPPSA-QPK------PSNEIADCRWLSLDALGDLNASA  105 (112)
T ss_pred             -CCEEEEEEEEEcCCcC-CCC------CchheeEEEEecHHHhhhcccch
Confidence             0123456666654321 111      23588999999999999887753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.61  E-value=9.6e-15  Score=119.05  Aligned_cols=111  Identities=23%  Similarity=0.248  Sum_probs=72.7

Q ss_pred             CCccceEEEEEEecCCcEEEEeecCC----CCCe-ecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCC
Q 028086           64 EGYRRNVGICLINSSKKIFAASRLDI----PDSW-QMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFP  133 (214)
Q Consensus        64 ~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W-~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p  133 (214)
                      ...++++.++|+|++|+|||++|...    ||.| .+|||     ||+.+||+|||+||||+....+.. . ..+.+..+
T Consensus        34 ~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~-~-~~~~~~~~  111 (180)
T PRK15393         34 CLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAE-H-GQFYFEDE  111 (180)
T ss_pred             CCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCcccee-c-eeEEecCC
Confidence            33578888889999999999999753    3556 57899     999999999999999998432211 1 11222211


Q ss_pred             chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC
Q 028086          134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK  198 (214)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~  198 (214)
                      .              .....++|.+...+   ...+     +++|+.+++|++++++.++...+.
T Consensus       112 ~--------------~~~~~~~f~~~~~~---~~~~-----~~~E~~~~~W~~~~el~~~~~~~~  154 (180)
T PRK15393        112 N--------------CRVWGALFSCVSHG---PFAL-----QEEEVSEVCWMTPEEITARCDEFT  154 (180)
T ss_pred             C--------------ceEEEEEEEEEeCC---CCCC-----ChHHeeEEEECCHHHHhhhhhhcC
Confidence            0              01122344444321   2222     346999999999999998754443

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.61  E-value=1.3e-14  Score=124.42  Aligned_cols=147  Identities=11%  Similarity=0.129  Sum_probs=89.6

Q ss_pred             CCCCCCCCCCCCCCcccccccccccccccccCCCCCCccceEEEEEEecCCcEEEEeecCCC-CCeecCCC-----CCHH
Q 028086           29 TSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIP-DSWQMPQN-----EDPK  102 (214)
Q Consensus        29 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvI~~~~g~vLL~rR~~~~-g~W~lPgG-----Es~~  102 (214)
                      .+..||.+-.+.....  ......|..  ........+.++|.++| .++++|||++|.+.+ |.|.+|||     ||++
T Consensus        98 ~~~fC~~CG~~~~~~~--~~~~~~C~~--c~~~~yp~~~paViv~V-~~~~~iLL~rr~~~~~g~wslPgG~vE~GEs~e  172 (256)
T PRK00241         98 SHRFCGYCGHPMHPSK--TEWAMLCPH--CRERYYPRIAPCIIVAV-RRGDEILLARHPRHRNGVYTVLAGFVEVGETLE  172 (256)
T ss_pred             cCccccccCCCCeecC--CceeEECCC--CCCEECCCCCCEEEEEE-EeCCEEEEEEccCCCCCcEeCcccCCCCCCCHH
Confidence            4567777766554321  112222321  11112223345655555 456899999987654 89999999     9999


Q ss_pred             HHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCcee
Q 028086          103 VAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFG  180 (214)
Q Consensus       103 eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~  180 (214)
                      +||+||++||||++..  +.++..    .+.+|                +...+.|.+...++  ++.+     +++|+.
T Consensus       173 eAa~REv~EEtGl~v~~~~~~~s~----~~~~p----------------~~lm~~f~a~~~~~--~~~~-----~~~Ei~  225 (256)
T PRK00241        173 QCVAREVMEESGIKVKNLRYVGSQ----PWPFP----------------HSLMLGFHADYDSG--EIVF-----DPKEIA  225 (256)
T ss_pred             HHhhhhhhhccCceeeeeEEEEeE----eecCC----------------CeEEEEEEEEecCC--cccC-----CcccEE
Confidence            9999999999999842  222221    12222                23456677776543  2333     235899


Q ss_pred             eEEEeChhHHhhcCccCCHHHHHHHHHhh
Q 028086          181 EWKWMSPEQILERAVDFKKPVYKEVFTVF  209 (214)
Q Consensus       181 ~~~Wv~~~el~~~~~~~~~~~~~~~l~~~  209 (214)
                      +++|++++++..+  +....+...+++.+
T Consensus       226 ~a~W~~~del~~l--p~~~sia~~li~~~  252 (256)
T PRK00241        226 DAQWFRYDELPLL--PPSGTIARRLIEDT  252 (256)
T ss_pred             EEEEECHHHCccc--CCchHHHHHHHHHH
Confidence            9999999998754  34445555555544

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.61  E-value=1.1e-14  Score=114.89  Aligned_cols=116  Identities=25%  Similarity=0.344  Sum_probs=73.0

Q ss_pred             CCccceEEEEEEecCCcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCc
Q 028086           64 EGYRRNVGICLINSSKKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPP  134 (214)
Q Consensus        64 ~~~~~~v~vvI~~~~g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~  134 (214)
                      .....+|+++++.. |+|||+||.+.|  |.|.+|||     ||+++||.||++||||++.  .++++      .|+.+.
T Consensus         7 ~~p~~~v~~~i~~~-~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~------v~~~~~   79 (145)
T COG1051           7 RTPLVAVGALIVRN-GRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLA------VFDDPG   79 (145)
T ss_pred             CCcceeeeEEEEeC-CEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEE------EecCCC
Confidence            34567778777754 499999999876  88999999     9999999999999999983  22222      233332


Q ss_pred             hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc--cCCHHHH
Q 028086          135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV--DFKKPVY  202 (214)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~--~~~~~~~  202 (214)
                      ..         +. .+...++|+.....+  +....    +.++..++.|++++++..+..  .+...-+
T Consensus        80 rd---------~r-~~~v~~~~~~~~~~g--~~~~~----~~~d~~~~~~~~~~~l~~~~~~~~~~~~~l  133 (145)
T COG1051          80 RD---------PR-GHHVSFLFFAAEPEG--ELLAG----DGDDAAEVGWFPLDELPELPLPLAFTLADL  133 (145)
T ss_pred             CC---------Cc-eeEEEEEEEEEecCC--CcccC----ChhhHhhcceecHhHcccccccccccHHHH
Confidence            10         00 012223333333222  11111    223677899999999987644  3444433

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.61  E-value=6.8e-15  Score=117.18  Aligned_cols=102  Identities=25%  Similarity=0.305  Sum_probs=68.3

Q ss_pred             eEEEEEEecC--CcEEEEeecCC----CCCeecCCC------CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCc
Q 028086           69 NVGICLINSS--KKIFAASRLDI----PDSWQMPQN------EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPP  134 (214)
Q Consensus        69 ~v~vvI~~~~--g~vLL~rR~~~----~g~W~lPgG------Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~  134 (214)
                      +|.+++.+.+  ++|||++|...    +|.|++|||      |++.+||+||++||||++..  ..++......  .   
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~---   78 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYY--T---   78 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCcc--c---
Confidence            4555566655  68999999763    589999999      79999999999999999842  2333221110  0   


Q ss_pred             hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                                   ..+...+.|++..... ..+.+     +++|+.+++|++++++.+..
T Consensus        79 -------------~~~~~v~~~~~~~~~~-~~~~~-----~~~E~~~~~W~~~~el~~~~  119 (157)
T cd03426          79 -------------RSGFVVTPVVGLVPPP-LPLVL-----NPDEVAEVFEVPLSFLLDPA  119 (157)
T ss_pred             -------------cCCCEEEEEEEEECCC-CCCCC-----CHHHhheeEEEcHHHHhCcC
Confidence                         0123345566655432 12232     34589999999999998764

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=9.1e-15  Score=111.09  Aligned_cols=50  Identities=28%  Similarity=0.460  Sum_probs=43.6

Q ss_pred             ceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCc
Q 028086           68 RNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSS  117 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~  117 (214)
                      .+|+++|++++|+|||++|...    +|.|++|||     |++.+||+||++||||++.
T Consensus         2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~   60 (129)
T cd04699           2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV   60 (129)
T ss_pred             ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEE
Confidence            4577788887799999999754    579999999     9999999999999999974

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.60  E-value=1.6e-14  Score=109.58  Aligned_cols=112  Identities=22%  Similarity=0.373  Sum_probs=72.2

Q ss_pred             ceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhh
Q 028086           68 RNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~  137 (214)
                      ..++++|++.+|+|||+||...   +|.|++|||     |++.+||.||++||||++..  ..++.    +.+.++..  
T Consensus         5 ~~~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~----~~~~~~~~--   78 (129)
T PRK10776          5 QIAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEK----LEYEFPDR--   78 (129)
T ss_pred             EEEEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEE----EEeeCCCc--
Confidence            3445566677889999999764   489999999     89999999999999999732  22221    22333211  


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHH
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVF  206 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l  206 (214)
                                  ....++|.+.....  .+.       ..|..+++|++++++..... +..+++++.++
T Consensus        79 ------------~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~~  127 (129)
T PRK10776         79 ------------HITLWFWLVESWEG--EPW-------GKEGQPGRWVSQVALNADEFPPANEPIIAKLK  127 (129)
T ss_pred             ------------EEEEEEEEEEEECC--ccC-------CccCCccEEecHHHCccCCCCcccHHHHHHHH
Confidence                        11233444433211  111       13667889999999988755 44566666554

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=1.4e-14  Score=111.47  Aligned_cols=100  Identities=23%  Similarity=0.272  Sum_probs=69.3

Q ss_pred             CccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhh
Q 028086           65 GYRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        65 ~~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~  137 (214)
                      ..+.+|+++|++ +++|||++|...  .|.|.+|||     |++++||+||++||||++. ......   ..+..+.   
T Consensus        11 ~~~~~v~~ii~~-~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~-~~~~~~---~~~~~~~---   82 (130)
T cd04511          11 NPKIIVGCVPEW-EGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARV-EIDGLY---AVYSVPH---   82 (130)
T ss_pred             CCcEEEEEEEec-CCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEE-EeeeEE---EEEecCC---
Confidence            335666777665 489999998653  389999999     9999999999999999984 222111   1222221   


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL  191 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~  191 (214)
                                 .+...++|+++..+.  .+..      ..|..+++|++++++.
T Consensus        83 -----------~~~~~~~f~~~~~~~--~~~~------~~e~~~~~~~~~~~l~  117 (130)
T cd04511          83 -----------ISQVYMFYRARLLDL--DFAP------GPESLEVRLFTEEEIP  117 (130)
T ss_pred             -----------ceEEEEEEEEEEcCC--cccC------CcchhceEEECHHHCC
Confidence                       134567788887643  2222      2477889999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.59  E-value=2.2e-14  Score=127.72  Aligned_cols=123  Identities=20%  Similarity=0.304  Sum_probs=77.7

Q ss_pred             ceEEEEEEecCCcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhh
Q 028086           68 RNVGICLINSSKKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~  138 (214)
                      ..|.++|+ .+|+|||++|.+.+  |.|.+|||     |++++||+||++||||++.  ..+.+.......+++|.... 
T Consensus       204 vtv~avv~-~~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~-  281 (340)
T PRK05379        204 VTVDAVVV-QSGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSL-  281 (340)
T ss_pred             eEEEEEEE-ECCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCC-
Confidence            45566665 47899999998654  78999999     9999999999999999983  22222222223445443210 


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc---CccCCHHHHHHHH
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER---AVDFKKPVYKEVF  206 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~---~~~~~~~~~~~~l  206 (214)
                               ......++|++....+. ...+.    ..+|..+++|++++++..+   .......+++.++
T Consensus       282 ---------~~~~i~~~f~~~~~~~~-~~~~~----~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~  338 (340)
T PRK05379        282 ---------RGRTITHAFLFEFPAGE-LPRVK----GGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL  338 (340)
T ss_pred             ---------CCcEEEEEEEEEecCCc-cCccC----CCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence                     01234567777665332 11121    2358899999999999864   2233344554443

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.55  E-value=6.7e-14  Score=104.85  Aligned_cols=109  Identities=26%  Similarity=0.414  Sum_probs=70.0

Q ss_pred             EEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhc
Q 028086           70 VGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLK  141 (214)
Q Consensus        70 v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~  141 (214)
                      +.++|++++|++||++|.+.   +|.|.+|||     |++.+||.||+.||||++... .... ..+.+.++.       
T Consensus         4 ~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~-~~~~-~~~~~~~~~-------   74 (124)
T cd03425           4 VAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEV-GELL-ATVEHDYPD-------   74 (124)
T ss_pred             EEEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEec-cceE-EEEEeeCCC-------
Confidence            45566677799999998754   589999999     899999999999999997321 1111 122233221       


Q ss_pred             cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHH
Q 028086          142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYK  203 (214)
Q Consensus       142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~  203 (214)
                             .....++|.+.....  ...       ..|..++.|++++++.++.. +..+++++
T Consensus        75 -------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~  121 (124)
T cd03425          75 -------KRVTLHVFLVELWSG--EPQ-------LLEHQELRWVPPEELDDLDFPPADVPIVA  121 (124)
T ss_pred             -------CeEEEEEEEEeeeCC--Ccc-------cccCceEEEeeHHHcccCCCCcccHHHHH
Confidence                   122334455544322  111       23678899999999988765 34445544

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>TIGR00586 mutt mutator mutT protein

Probab=99.54  E-value=1.4e-13  Score=104.57  Aligned_cols=110  Identities=21%  Similarity=0.241  Sum_probs=69.6

Q ss_pred             cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~  136 (214)
                      +..++++|++++|+|||++|.+.   .|.|++|||     |++.+||+||+.||||++.  ...+..    +.+.+..  
T Consensus         4 ~~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~----~~h~~~~--   77 (128)
T TIGR00586         4 QQIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKL----EYEFYPR--   77 (128)
T ss_pred             EEEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEE----EEEECCC--
Confidence            34455666688889999999764   389999998     8999999999999999983  112221    1122211  


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC-CHHHHH
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF-KKPVYK  203 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~-~~~~~~  203 (214)
                                  .....++|.+...++  ...       ..+..+++|++++++.++..|. .+++++
T Consensus        78 ------------~~~~~~~~~~~~~~~--~~~-------~~~~~~~~W~~~~~l~~~~~p~~~~~~~~  124 (128)
T TIGR00586        78 ------------HITLWFWLLERWEGG--PPG-------KEGQPEEWWVLVGLLADDFFPAANPVIIK  124 (128)
T ss_pred             ------------cEEEEEEEEEEEcCC--CcC-------cccccccEEeCHHHCCccCCCCCCHHHHH
Confidence                        011233444444322  111       1245678999999999887754 344443

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.52  E-value=1.4e-13  Score=111.81  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=75.5

Q ss_pred             CCCCccceEEEE--EEecC--CcEEEEeecCC----CCCe-ecCCC-----CCHHHHHHHHHHHHhCCCccee--eeecc
Q 028086           62 PPEGYRRNVGIC--LINSS--KKIFAASRLDI----PDSW-QMPQN-----EDPKVAALRELKEETGVSSAEV--LAEVP  125 (214)
Q Consensus        62 ~~~~~~~~v~vv--I~~~~--g~vLL~rR~~~----~g~W-~lPgG-----Es~~eAA~REl~EETGl~~~~~--l~~~~  125 (214)
                      ....++++|.+.  +.|.+  ++||++||+..    ||.| .+|||     |++.+||+||++||||++...+  +... 
T Consensus        27 ~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~-  105 (180)
T cd03676          27 LFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPV-  105 (180)
T ss_pred             cCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceec-
Confidence            345568888865  45665  89999999765    6999 48888     9999999999999999984221  1111 


Q ss_pred             ceEEecCC-chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          126 YWLTYDFP-PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       126 ~~~~~~~p-~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      ..+.|.+. ..          +....+..++|.+..... ..+.+     +++|+.++.|++++++.+++.
T Consensus       106 g~~~~~~~~~~----------~~~~~e~~~~f~~~~~~~-~~~~~-----~~~Ev~~~~~~~~~el~~~l~  160 (180)
T cd03676         106 GVVSYLREGEA----------GGLQPEVEYVYDLELPPD-FIPAP-----QDGEVESFRLLTIDEVLRALK  160 (180)
T ss_pred             cEEEEEEEcCC----------CcEeeeEEEEEEEEcCCC-CeeCC-----CCCcEeEEEEECHHHHHHHHH
Confidence            11222221 11          011234456665554321 12222     356999999999999988765

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.52  E-value=2.1e-13  Score=116.25  Aligned_cols=136  Identities=21%  Similarity=0.322  Sum_probs=79.6

Q ss_pred             CCCCccceEEEEEEecCCcEEEEeecCC----CCCeecC-----CC-CC-----------------HHHHHHHHHHHHhC
Q 028086           62 PPEGYRRNVGICLINSSKKIFAASRLDI----PDSWQMP-----QN-ED-----------------PKVAALRELKEETG  114 (214)
Q Consensus        62 ~~~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-----gG-Es-----------------~~eAA~REl~EETG  114 (214)
                      ....+++++.++|+|.+|+|||+||+..    ||.|+..     ++ |+                 ..+||+|||+||||
T Consensus        51 ~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElG  130 (247)
T PLN02552         51 PRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELG  130 (247)
T ss_pred             CCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhC
Confidence            3467899999999999999999999875    5899554     33 22                 67899999999999


Q ss_pred             CCcce--e--eeeccceEEecCCchhhhhhccccCCCcc-CceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhH
Q 028086          115 VSSAE--V--LAEVPYWLTYDFPPEVREKLKHQWGGDWK-GQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQ  189 (214)
Q Consensus       115 l~~~~--~--l~~~~~~~~~~~p~~~~~~l~~~~~~~~~-~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~e  189 (214)
                      |....  +  +... ..+.|..+....    .--.+.+. ....++| +........+.+     +++|+.+++|+++++
T Consensus       131 I~~~~~~~~~l~~~-~~~~y~~~~~~~----~~~~~~~~E~e~~~v~-~~~~~~~~~l~l-----q~eEV~~~~wvs~~e  199 (247)
T PLN02552        131 IPAEDVPVDQFTFL-TRLHYKAADDVT----HGPDGKWGEHELDYLL-FIRPVRDVKVNP-----NPDEVADVKYVNREE  199 (247)
T ss_pred             CCccccccccceee-eEEEEecccccc----cccCCCccceEEEEEE-EEEecCCCcccC-----CHHHhheEEEEeHHH
Confidence            98321  1  1111 112222211100    00001111 2233333 222212223444     357999999999999


Q ss_pred             HhhcC--------ccCCHHHHHHHHHh
Q 028086          190 ILERA--------VDFKKPVYKEVFTV  208 (214)
Q Consensus       190 l~~~~--------~~~~~~~~~~~l~~  208 (214)
                      +.+++        .|.-+.+++..+..
T Consensus       200 l~~~~~~~~~~~~tpw~~~~~~~~l~~  226 (247)
T PLN02552        200 LKEMMRKESGLKLSPWFRLIVDNFLMK  226 (247)
T ss_pred             HHHHHhhcCCcccCHHHHHHHHHHHHH
Confidence            99873        34444455554443

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=3.7e-13  Score=99.88  Aligned_cols=105  Identities=26%  Similarity=0.461  Sum_probs=70.3

Q ss_pred             eEEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhh
Q 028086           69 NVGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      ++++++++.+++|||++|.+. +|.|.+|||     |++.+||+||++||+|+...  ....    .+.+..+..     
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~----~~~~~~~~~-----   72 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLG----VYEVESPDE-----   72 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEE----EEEeeccCC-----
Confidence            567788888799999998874 589999999     99999999999999999742  2211    122221110     


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                             ......++|.+........  .    ....|..+++|++++++.++..
T Consensus        73 -------~~~~~~~~~~~~~~~~~~~--~----~~~~e~~~~~w~~~~~l~~~~~  114 (123)
T cd02883          73 -------GEHAVVFVFLARLVGGEPT--L----LPPDEISEVRWVTLDELPALAL  114 (123)
T ss_pred             -------CceEEEEEEEEEeCCCCcC--C----CCCCccceEEEEcHHHCccccc
Confidence                   0123445566665533211  0    1234778899999999987544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.46  E-value=6.1e-13  Score=108.73  Aligned_cols=103  Identities=24%  Similarity=0.240  Sum_probs=69.7

Q ss_pred             eEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeeccceEEecCCchhhh
Q 028086           69 NVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~~p~~~~~  138 (214)
                      +|+++.++++++|||+++.+.   ...|++|||     |++++||+||++||||+....  .++..      ...++   
T Consensus        49 ~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~------~~~~~---  119 (185)
T PRK11762         49 AVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKEL------SLAPS---  119 (185)
T ss_pred             EEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEE------ecCCC---
Confidence            566676778889999998654   267999999     999999999999999998532  23221      11111   


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                               +.....++|++.....  .. .   ..++.|..++.|++++++.+++.
T Consensus       120 ---------~~~~~~~~f~a~~~~~--~~-~---~~~e~E~i~~~~~~~~e~~~~~~  161 (185)
T PRK11762        120 ---------YFSSKMNIVLAEDLYP--ER-L---EGDEPEPLEVVRWPLADLDELLA  161 (185)
T ss_pred             ---------ccCcEEEEEEEEcccc--cc-C---CCCCCceeEEEEEcHHHHHHHHH
Confidence                     1234556666653211  11 1   12345677899999999988766

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.44  E-value=1.1e-12  Score=107.84  Aligned_cols=105  Identities=16%  Similarity=0.106  Sum_probs=66.7

Q ss_pred             ccceEEEEEEe--cCCcEEEEeecCC----CCCeecCCC------CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEec
Q 028086           66 YRRNVGICLIN--SSKKIFAASRLDI----PDSWQMPQN------EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYD  131 (214)
Q Consensus        66 ~~~~v~vvI~~--~~g~vLL~rR~~~----~g~W~lPgG------Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~  131 (214)
                      .+.+|+++.+.  .++.||+.+|...    +|.|++|||      |++++||+||++||||+..  ..+++.....  +.
T Consensus        29 ~~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~--~~  106 (190)
T PRK10707         29 QRQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPV--DS  106 (190)
T ss_pred             CCCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeee--ec
Confidence            35566666553  3458998886543    489999999      5699999999999999984  3344433211  11


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                      .                .+...+.+++.+... ....     .+++|+.++.|++++++.++.
T Consensus       107 ~----------------~~~~~~~~v~~~~~~-~~~~-----~d~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707        107 S----------------TGYQVTPVVGIIPPD-LPYR-----ANEDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             c----------------CCcEEEEEEEEECCC-CCCC-----CChhhhheEEEEeHHHHhCcc
Confidence            1                122334444444321 1111     245689999999999998764

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.43  E-value=7e-13  Score=108.63  Aligned_cols=110  Identities=16%  Similarity=0.195  Sum_probs=72.8

Q ss_pred             ceEEEEEEec-CCcEEEEeecCC--------CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCC
Q 028086           68 RNVGICLINS-SKKIFAASRLDI--------PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFP  133 (214)
Q Consensus        68 ~~v~vvI~~~-~g~vLL~rR~~~--------~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p  133 (214)
                      .+|++++++. +++|||+++.+.        +..|++|||     |++++||+||++||||+....+.. .   ..+...
T Consensus        45 ~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~-~---~~~~~~  120 (185)
T TIGR00052        45 NAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRK-L---LSFYSS  120 (185)
T ss_pred             CeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEE-E---EEEEcC
Confidence            4566777765 479999997652        368899999     999999999999999998533211 1   111111


Q ss_pred             chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                      +            ++.....++|+++..+... ....  +.+++|..+..|++++++.+++..
T Consensus       121 ~------------g~~~~~~~~f~a~~~~~~~-~~~~--~~~~~E~ie~~~~~~~e~~~~~~~  168 (185)
T TIGR00052       121 P------------GGVTELIHLFIAEVDDNQA-AGIG--GGADEEEIEVLHLVFSQALQWIKE  168 (185)
T ss_pred             C------------CCCcEEEEEEEEEEchhhc-CCCC--CCCCccceEEEEeCHHHHHHHHHc
Confidence            1            2245667888888654311 1111  123345667999999999988763

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.42  E-value=1e-12  Score=101.22  Aligned_cols=49  Identities=33%  Similarity=0.508  Sum_probs=38.9

Q ss_pred             eEEEEEEecC---CcEEEEeec------CCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc
Q 028086           69 NVGICLINSS---KKIFAASRL------DIPDSWQMPQN-----EDPKVAALRELKEETGVSS  117 (214)
Q Consensus        69 ~v~vvI~~~~---g~vLL~rR~------~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~  117 (214)
                      ++++++++.+   .+|||++|.      ...+.|++|||     |++.+||+||++||||+..
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~   64 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCV   64 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcc
Confidence            4566666422   379999862      22489999999     9999999999999999974

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.38  E-value=4.8e-12  Score=105.06  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=73.0

Q ss_pred             ceEEEEEEec-CCcEEEEeecCCC--------CCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCC
Q 028086           68 RNVGICLINS-SKKIFAASRLDIP--------DSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFP  133 (214)
Q Consensus        68 ~~v~vvI~~~-~g~vLL~rR~~~~--------g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p  133 (214)
                      .+|+++.+++ +++|+|+++.+.+        -.|++|+|     |++++||+|||.||||+...++..    ...+...
T Consensus        50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~----l~~~~~s  125 (202)
T PRK10729         50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKP----VLSYLAS  125 (202)
T ss_pred             CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEE----EEEEEcC
Confidence            4566776776 4799999987764        25999999     999999999999999998533211    1111111


Q ss_pred             chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      +            ++..+..++|+++....... ... ...++.|..++.|++++++.+++.
T Consensus       126 p------------g~~~e~~~~fla~~~~~~~~-~~~-~~~de~E~i~v~~~~~~e~~~~~~  173 (202)
T PRK10729        126 P------------GGTSERSSIMVGEVDATTAS-GIH-GLADENEDIRVHVVSREQAYQWVE  173 (202)
T ss_pred             C------------CcCceEEEEEEEEEcchhcc-cCC-CCCCCCCceEEEEEcHHHHHHHHH
Confidence            1            23466778888875321100 100 012445777899999999998876

>PRK08999 hypothetical protein; Provisional

Probab=99.38  E-value=5.8e-12  Score=110.44  Aligned_cols=112  Identities=19%  Similarity=0.280  Sum_probs=70.8

Q ss_pred             cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~  136 (214)
                      +..+.++|++.+|+|||++|...   +|.|++|||     |++.+||.||++||||+...  ..+..    ..+.++.. 
T Consensus         5 ~~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~----~~h~~~~~-   79 (312)
T PRK08999          5 IHVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLIT----VRHDYPDK-   79 (312)
T ss_pred             eEEEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEE----EEEEcCCC-
Confidence            34455566677789999998654   489999998     89999999999999999832  11211    12222211 


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHH
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEV  205 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~  205 (214)
                                   ....++|.+....+  ..       ...|..+++|++++++.++.. +..+++++.+
T Consensus        80 -------------~~~i~~y~~~~~~~--~~-------~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l  127 (312)
T PRK08999         80 -------------RVRLDVRRVTAWQG--EP-------HGREGQPLAWVAPDELAVYPFPPANQPIVRAL  127 (312)
T ss_pred             -------------eEEEEEEEEEEecC--cc-------cCccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence                         11233444433221  11       123677889999999988755 3445555544

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.38  E-value=6.7e-12  Score=103.35  Aligned_cols=109  Identities=18%  Similarity=0.195  Sum_probs=73.5

Q ss_pred             ceEEEEEEec-CCcEEEEeecCCC---------CCeecCCC----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCC
Q 028086           68 RNVGICLINS-SKKIFAASRLDIP---------DSWQMPQN----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFP  133 (214)
Q Consensus        68 ~~v~vvI~~~-~g~vLL~rR~~~~---------g~W~lPgG----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p  133 (214)
                      .+|+|++++. +++|+|+++.+.+         -.|++|+|    +++++||+|||+||||+....+...    ..+ |+
T Consensus        46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~~p~~aA~REL~EETGy~a~~~~~l----~~~-~~  120 (191)
T PRK15009         46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKL----FEL-YM  120 (191)
T ss_pred             CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCCCHHHHHHHHHHHhhCCccceEEEe----eEE-Ec
Confidence            4566777775 6799999987653         25899999    7899999999999999985333211    111 11


Q ss_pred             chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      .           +++..+..+.|+++..... ....  ...++.|..++.|+|++++.+++.
T Consensus       121 s-----------pG~s~e~~~lf~a~~~~~~-~~~~--~~~de~E~iev~~~~~~e~~~~i~  168 (191)
T PRK15009        121 S-----------PGGVTELIHFFIAEYSDSQ-RANA--GGGVEDEDIEVLELPFSQALEMIK  168 (191)
T ss_pred             C-----------CcccCcEEEEEEEEECchh-cccC--CCCCCCceEEEEEEcHHHHHHHHH
Confidence            1           1235667788888764211 1111  112356778899999999998876

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.31  E-value=7.8e-12  Score=97.15  Aligned_cols=127  Identities=25%  Similarity=0.402  Sum_probs=78.4

Q ss_pred             CCCCccceEEEEEEecCC---cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEec
Q 028086           62 PPEGYRRNVGICLINSSK---KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYD  131 (214)
Q Consensus        62 ~~~~~~~~v~vvI~~~~g---~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~  131 (214)
                      .+.++|..++++.+..++   +|||+.-++.+..|.+|+|     |+..+||+||.+||.|+..  .++++...   .+.
T Consensus         4 ~~~G~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~---~~~   80 (145)
T KOG2839|consen    4 DPAGFRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFE---DFL   80 (145)
T ss_pred             CCCCcEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchh---hcc
Confidence            347889999988886554   7999998887789999999     9999999999999999982  23222211   111


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV  208 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~  208 (214)
                      .....          .+  ...+.|.+... .  ++..-  .....|+.+.+|+.++|+.+.+. ..++..|++.++.
T Consensus        81 ~~~~~----------~~--~k~~~~~l~v~-e--~le~w--p~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~  141 (145)
T KOG2839|consen   81 SKKHR----------TK--PKGVMYVLAVT-E--ELEDW--PESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQF  141 (145)
T ss_pred             Chhhc----------cc--ccceeehhhhh-h--hcccC--hhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHH
Confidence            11100          00  11122333222 1  11111  11233588999999999998776 2233445544443

>PLN02709 nudix hydrolase

Probab=99.28  E-value=3.7e-11  Score=100.80  Aligned_cols=91  Identities=20%  Similarity=0.243  Sum_probs=64.1

Q ss_pred             cEEEEeecCC----CCCeecCCC------CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccccCCC
Q 028086           80 KIFAASRLDI----PDSWQMPQN------EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGD  147 (214)
Q Consensus        80 ~vLL~rR~~~----~g~W~lPgG------Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~  147 (214)
                      +|||.+|+..    +|.|+||||      +++.+||+||++||+||..  +++++......+   +              
T Consensus        52 ~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t---~--------------  114 (222)
T PLN02709         52 RVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVN---K--------------  114 (222)
T ss_pred             EEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeEC---C--------------
Confidence            7999999764    599999999      5789999999999999984  567766543211   1              


Q ss_pred             ccCceEEEEEEEEeCC-cceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086          148 WKGQAQKWFLLKFTGK-EEEINLLGDKSEKPEFGEWKWMSPEQILER  193 (214)
Q Consensus       148 ~~~~~~~~fl~~~~~~-~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~  193 (214)
                       .+...+-|++.+... ...+.+     +++|+.++.|+|++++.+.
T Consensus       115 -sg~~V~P~V~~~~~~~~~~~~~-----np~EV~~vf~vPL~~ll~~  155 (222)
T PLN02709        115 -KGMSVAPVIGFLHDKKAFKPLP-----NPAEVEEIFDVPLEMFLKD  155 (222)
T ss_pred             -CCCEEEEEEEEecCCCCccccC-----ChhhhheeEEecHHHHhCC
Confidence             133456666655421 112222     3469999999999998753

>PLN02791 Nudix hydrolase homolog

Probab=99.28  E-value=3.2e-11  Score=116.47  Aligned_cols=116  Identities=19%  Similarity=0.354  Sum_probs=76.0

Q ss_pred             CCccceEEEEEEec-CCcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCc-ceeeeeccceEEec
Q 028086           64 EGYRRNVGICLINS-SKKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSS-AEVLAEVPYWLTYD  131 (214)
Q Consensus        64 ~~~~~~v~vvI~~~-~g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~-~~~l~~~~~~~~~~  131 (214)
                      ..++++|.++|+|. +|+|||+||+..    ||.|++ +||     |+..+||+||++||+||.. ...+... ..+.+.
T Consensus        29 Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l-~~~~~~  107 (770)
T PLN02791         29 GDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELL-FVFLQE  107 (770)
T ss_pred             CCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeee-eeEEEE
Confidence            56899999999996 689999999764    699999 688     9999999999999999973 1111111 111111


Q ss_pred             CCchhhhhhccccCCCcc-CceEEEEEEEEeCCcc--eeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          132 FPPEVREKLKHQWGGDWK-GQAQKWFLLKFTGKEE--EINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~-~~~~~~fl~~~~~~~~--~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                      ..         .+.+.+. +...++|++...+..+  ++.+     +++|+.+++|++++|+.+++
T Consensus       108 ~~---------~~~g~~~e~E~~~VYlv~~~~~~p~~~~~l-----q~eEV~~v~wvsl~El~~~l  159 (770)
T PLN02791        108 CV---------INDGKFINNEYNDVYLVTTLDPIPLEAFTL-----QESEVSAVKYMSIEEYKSAL  159 (770)
T ss_pred             ee---------ccCCCcceeeEEEEEEEEECCCCCcccCCC-----ChhhhheeEEEcHHHHHHHH
Confidence            00         0111111 2344556655433211  2222     46799999999999998554

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.28  E-value=3.6e-11  Score=91.71  Aligned_cols=93  Identities=20%  Similarity=0.148  Sum_probs=61.6

Q ss_pred             EEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhhcc
Q 028086           70 VGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKLKH  142 (214)
Q Consensus        70 v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l~~  142 (214)
                      |.+++++ ++++||+++.+  +.|.+|||     |++++||.||++||||+...  ..++.      |.++..       
T Consensus         3 v~vi~~~-~~~vLl~~~~~--~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~------~~~~~~-------   66 (118)
T cd04665           3 VLVICFY-DDGLLLVRHKD--RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGY------YQVDLF-------   66 (118)
T ss_pred             EEEEEEE-CCEEEEEEeCC--CEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEE------EEecCC-------
Confidence            4555554 57899999874  68999999     99999999999999999852  22322      111111       


Q ss_pred             ccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHH
Q 028086          143 QWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQI  190 (214)
Q Consensus       143 ~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el  190 (214)
                           .......+|.+...... ....      ..|+.+..|++.+..
T Consensus        67 -----~~~~~~~~y~a~~~~~~-~~~~------~~E~~~~~~~~~~~~  102 (118)
T cd04665          67 -----ESGFETLVYPAVSAQLE-EKAS------YLETDGPVLFKNEPE  102 (118)
T ss_pred             -----CCcEEEEEEEEEEEecc-cccc------cccccCcEEeccCCc
Confidence                 01334556666665332 2222      248999999998765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.27  E-value=8.6e-11  Score=90.64  Aligned_cols=46  Identities=30%  Similarity=0.465  Sum_probs=37.0

Q ss_pred             EEEEEEecCC--cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc
Q 028086           70 VGICLINSSK--KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS  117 (214)
Q Consensus        70 v~vvI~~~~g--~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~  117 (214)
                      |.++|.+.++  +||+.+...  +.|.+|||     |++.+||+||++||||++.
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~~--~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHPL--AGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcCC--CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            5666666654  666666544  56999999     9999999999999999984

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.25  E-value=1e-10  Score=89.20  Aligned_cols=49  Identities=29%  Similarity=0.194  Sum_probs=38.0

Q ss_pred             ceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc
Q 028086           68 RNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS  117 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~  117 (214)
                      ..++++|...+ ++||++|...  +|.|.+|||     |++.+||.||++||||+..
T Consensus         5 ~~av~vl~~~~-~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~   60 (118)
T cd04674           5 PVVVALLPVDD-GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAV   60 (118)
T ss_pred             EEEEEEEEECC-CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence            44455554544 4677777654  389999999     9999999999999999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.16  E-value=4.3e-10  Score=89.78  Aligned_cols=110  Identities=19%  Similarity=0.209  Sum_probs=68.5

Q ss_pred             eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhhc
Q 028086           69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKLK  141 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l~  141 (214)
                      .|.++++. ++++||+++..  ..|++|||     ||+++||+||++||||+...  ..++.      |....+      
T Consensus        26 ~V~ii~~~-~~~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~------~~~~~~------   90 (156)
T TIGR02705        26 HVLVIPRY-KDQWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQ------YEVEGE------   90 (156)
T ss_pred             EEEEEEEE-CCEEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEE------EEecCC------
Confidence            45555454 55899998875  46999999     99999999999999999742  22322      111111      


Q ss_pred             cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEE-EeChhHHhhcCcc-------CCHHHHHHHHHhh
Q 028086          142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWK-WMSPEQILERAVD-------FKKPVYKEVFTVF  209 (214)
Q Consensus       142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~-Wv~~~el~~~~~~-------~~~~~~~~~l~~~  209 (214)
                            ......+.|+++.....    .      .+|..+.. +++++++.+.+..       .+..++.+.++.+
T Consensus        91 ------~~~~~~~vf~A~~~~~~----~------~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~  150 (156)
T TIGR02705        91 ------STDFVKDVYFAEVSALE----S------KDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVLLKCLERA  150 (156)
T ss_pred             ------CcEEEEEEEEEEEeccc----c------CCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHHHHHHHHH
Confidence                  12334566777665321    1      12555556 7999999776552       1345555555543

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.14  E-value=8.7e-10  Score=83.32  Aligned_cols=50  Identities=32%  Similarity=0.474  Sum_probs=38.5

Q ss_pred             eEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHH-HHHHHHHHHhCCCcc
Q 028086           69 NVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKV-AALRELKEETGVSSA  118 (214)
Q Consensus        69 ~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~e-AA~REl~EETGl~~~  118 (214)
                      .+.+++.... ++||+.+|....+.|.+|||     |++.+ ||+||++||||+...
T Consensus        13 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~   69 (161)
T COG0494          13 AVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK   69 (161)
T ss_pred             eEEEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence            3444444433 78999998875459999999     67787 999999999999853

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.11  E-value=8.4e-10  Score=90.46  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=32.6

Q ss_pred             cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCC
Q 028086           80 KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVS  116 (214)
Q Consensus        80 ~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~  116 (214)
                      +||+++|.. +|.|.+|||     |++.+||+||++||||+.
T Consensus        50 ~vLl~~r~~-~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~   90 (186)
T cd03670          50 QFVAIKRPD-SGEWAIPGGMVDPGEKISATLKREFGEEALNS   90 (186)
T ss_pred             EEEEEEeCC-CCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence            788899876 599999999     999999999999999764

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PLN03143 nudix hydrolase; Provisional

Probab=99.11  E-value=1.5e-09  Score=94.63  Aligned_cols=117  Identities=19%  Similarity=0.251  Sum_probs=70.7

Q ss_pred             eEEEEEE-ecCCc--EEEEeecCCC---CCeecCCC------CCHHHHHHHHHHHHhCCCc--ceeeeecc------ceE
Q 028086           69 NVGICLI-NSSKK--IFAASRLDIP---DSWQMPQN------EDPKVAALRELKEETGVSS--AEVLAEVP------YWL  128 (214)
Q Consensus        69 ~v~vvI~-~~~g~--vLL~rR~~~~---g~W~lPgG------Es~~eAA~REl~EETGl~~--~~~l~~~~------~~~  128 (214)
                      +|+|+++ +.+++  |+|+++.+.+   ..|++|||      |++.+||+||++||||+..  .++.....      ..-
T Consensus       130 aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~  209 (291)
T PLN03143        130 AVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCR  209 (291)
T ss_pred             eEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCce
Confidence            5666554 54565  9999988753   58899999      5799999999999999973  23322110      001


Q ss_pred             EecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceee-ccC--C-CCCcCceeeEEEeChhHHhhcCccCC
Q 028086          129 TYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEIN-LLG--D-KSEKPEFGEWKWMSPEQILERAVDFK  198 (214)
Q Consensus       129 ~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~-l~~--~-~~~~~E~~~~~Wv~~~el~~~~~~~~  198 (214)
                      .|..|             +...+..++|++.-......+. +..  . ..++.|..++.|++++++.++..+.+
T Consensus       210 v~psp-------------G~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~k  270 (291)
T PLN03143        210 MFPSP-------------GGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAK  270 (291)
T ss_pred             EEecC-------------CccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhHH
Confidence            12222             2234555666655432111110 000  0 12456777899999999988876554

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.08  E-value=1.7e-10  Score=99.08  Aligned_cols=102  Identities=22%  Similarity=0.370  Sum_probs=69.7

Q ss_pred             cceEEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeeccceEEecCCchhhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~~p~~~~~  138 (214)
                      -++|-++|.+ ++++||.++.+. +|.+..-+|     ||+++|+.||++||+||++.+  ..+. +.|   .||...+ 
T Consensus       144 dP~vIv~v~~-~~~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~S-QPW---PfP~SLM-  217 (279)
T COG2816         144 DPCVIVAVIR-GDEILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGS-QPW---PFPHSLM-  217 (279)
T ss_pred             CCeEEEEEec-CCceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEec-cCC---CCchhhh-
Confidence            3555555554 445888887654 589999998     999999999999999998533  3332 222   3454432 


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                                     .-|...+.++  ++..+     ..|+.+++|++.+|+...+.+
T Consensus       218 ---------------igf~aey~sg--eI~~d-----~~Eleda~WFs~~evl~~L~~  253 (279)
T COG2816         218 ---------------LGFMAEYDSG--EITPD-----EGELEDARWFSRDEVLPALPP  253 (279)
T ss_pred             ---------------hhheeeeccc--cccCC-----cchhhhccccCHhHHhhhcCC
Confidence                           3355666654  35553     369999999999996655553

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.02  E-value=2.6e-10  Score=98.83  Aligned_cols=53  Identities=26%  Similarity=0.290  Sum_probs=42.3

Q ss_pred             ccceEEEEEEecCCc-EEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc
Q 028086           66 YRRNVGICLINSSKK-IFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSA  118 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~-vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~  118 (214)
                      .-+.|..+|++++|+ .||.|+.+. +|.|..++|     ||++|||+||++||||++..
T Consensus       186 ~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~  245 (345)
T KOG3084|consen  186 TDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVE  245 (345)
T ss_pred             CCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceee
Confidence            346677778888875 555554444 499999999     99999999999999999853

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.96  E-value=6.4e-10  Score=96.09  Aligned_cols=121  Identities=25%  Similarity=0.339  Sum_probs=83.7

Q ss_pred             cccccCCCCCCccceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeee
Q 028086           55 SSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAE  123 (214)
Q Consensus        55 ~~~~~~~~~~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~  123 (214)
                      ..++..+.+...+.+|++.|+|.+++||+++..+.    .|.|-+|+|     |++.++|+||++||||++.  .++++.
T Consensus       103 e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~  182 (295)
T KOG0648|consen  103 EAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAF  182 (295)
T ss_pred             cccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHHH
Confidence            33466666677788999999999999999986443    499999999     9999999999999999973  222221


Q ss_pred             ccceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          124 VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       124 ~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                      ...+   +  ..+           -....+.||++.+..-.-+++.     ...|+..+.|+++++......-
T Consensus       183 r~~H---~--~~~-----------~~~ksd~f~~c~L~p~s~~i~~-----~~~ei~~~~Wmp~~e~v~qp~~  234 (295)
T KOG0648|consen  183 RRAH---N--ATF-----------GLIKSDMFFTCELRPRSLDITK-----CKREIEAAAWMPIEEYVSQPLV  234 (295)
T ss_pred             Hhhh---c--chh-----------hcccccceeEEEeeccccccch-----hHHHHHHHhcccHHHhhccccc
Confidence            1110   0  000           0124567888888643223332     3457888899999988776653

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.94  E-value=3e-09  Score=85.23  Aligned_cols=110  Identities=21%  Similarity=0.365  Sum_probs=74.2

Q ss_pred             ccceEEEEEEecCCcEEEEeecCC----CCCeec-----CC-CCCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC-
Q 028086           66 YRRNVGICLINSSKKIFAASRLDI----PDSWQM-----PQ-NEDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF-  132 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~l-----Pg-GEs~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~-  132 (214)
                      -+++.+++|+|++|++|++||+..    |+.|.-     |. ||+..+||+|-+.+|+||...  +... +...+.|.- 
T Consensus        32 LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~-il~rf~YrA~  110 (185)
T COG1443          32 LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLE-ILPRFRYRAA  110 (185)
T ss_pred             HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccc-cccceEEecc
Confidence            368889999999999999999765    477754     22 299999999999999999954  2222 223345543 


Q ss_pred             -CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          133 -PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       133 -p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                       +++..           .+.+...+.++...   .+.+     .++|+.+++|++++++.+++.
T Consensus       111 ~~~~~~-----------E~Eic~V~~~~~~~---~~~~-----npdEV~~~~wv~~e~l~~~~~  155 (185)
T COG1443         111 DPDGIV-----------ENEICPVLAARLDS---ALDP-----NPDEVMDYRWVSPEDLKEMVD  155 (185)
T ss_pred             CCCCcc-----------eeeeeeEEEEeecC---CCCC-----ChHHhhheeccCHHHHHHhhc
Confidence             22221           12222333334332   2232     346999999999999998876

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=98.89  E-value=2.7e-08  Score=81.17  Aligned_cols=111  Identities=23%  Similarity=0.248  Sum_probs=73.2

Q ss_pred             ceEEEEE-EecCC--cEEEEeecCCC-C--CeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchh
Q 028086           68 RNVGICL-INSSK--KIFAASRLDIP-D--SWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        68 ~~v~vvI-~~~~g--~vLL~rR~~~~-g--~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~  136 (214)
                      .+|+++. +..+|  .|+|+++.+.| |  .-++|+|     ||+++||+|||+||||+. .++....+..  |.     
T Consensus        74 dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-gkv~~~s~~~--f~-----  145 (225)
T KOG3041|consen   74 DGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK-GKVDMVSPTV--FL-----  145 (225)
T ss_pred             CeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc-ceeeeccccE--Ec-----
Confidence            5566554 34556  58999988866 5  5578999     999999999999999998 4443332222  21     


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcce-eeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEE-INLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~-i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                              ++++.+...+..++.+.+..++ .++. ...++.|+.++.=++..++.+.+.
T Consensus       146 --------DPGltn~~~~iv~v~idg~~pEnqrp~-q~ledgEfIev~~i~~~~L~~~~~  196 (225)
T KOG3041|consen  146 --------DPGLTNCNLCIVVVDIDGDVPENQRPV-QQLEDGEFIEVFLIPLSELWRELA  196 (225)
T ss_pred             --------CCCCCCCceEEEEEEecCCCccccCcc-ccCCCCceEEEEEeeHHHHHHHHH
Confidence                    1234455556666777665332 1111 124567999999999999876654

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.81  E-value=4.5e-08  Score=72.77  Aligned_cols=45  Identities=20%  Similarity=0.419  Sum_probs=35.5

Q ss_pred             EEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCC
Q 028086           71 GICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGV  115 (214)
Q Consensus        71 ~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl  115 (214)
                      .++++..+|++||.||...   +|.|+||+|     |+.+++..||+.||.++
T Consensus         6 ~~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~   58 (118)
T cd03431           6 AVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL   58 (118)
T ss_pred             EEEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc
Confidence            3444455789999999765   489999998     56788999999999874

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.80  E-value=2e-08  Score=76.59  Aligned_cols=127  Identities=18%  Similarity=0.346  Sum_probs=73.7

Q ss_pred             cceEEEEEEec-CC--cEEEEeecC------CCCCeecCCC-----CCHHHHHHHHHHHHhCCCcce---eeeeccc---
Q 028086           67 RRNVGICLINS-SK--KIFAASRLD------IPDSWQMPQN-----EDPKVAALRELKEETGVSSAE---VLAEVPY---  126 (214)
Q Consensus        67 ~~~v~vvI~~~-~g--~vLL~rR~~------~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~---~l~~~~~---  126 (214)
                      ++.+++++.+. +|  .|||++--.      +.|.|++|+|     |++..||.||..||+||.+..   .++....   
T Consensus         3 K~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ~GG   82 (161)
T COG4119           3 KLSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQSGG   82 (161)
T ss_pred             cccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhccCCC
Confidence            45567777643 34  566666322      1389999999     999999999999999997411   1111100   


Q ss_pred             --eEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHH
Q 028086          127 --WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKE  204 (214)
Q Consensus       127 --~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~  204 (214)
                        ...|....++          +-..-....|.+++.......      ..-+|++...|+++.++...+...+|.++.+
T Consensus        83 KvVta~~veae~----------Dva~~rSntFe~eWPprSG~M------~~FPEVDRagWF~l~eAr~Kil~gQRpfldr  146 (161)
T COG4119          83 KVVTAFGVEAEL----------DVADARSNTFELEWPPRSGKM------RKFPEVDRAGWFPLAEARTKILKGQRPFLDR  146 (161)
T ss_pred             cEEEEEeeeeee----------ehhhhhcceeeeecCCCCCcc------ccCcccccccceecHHHHhHHhhccchHHHH
Confidence              0000000000          000001122333333222122      2346899999999999998888888888887


Q ss_pred             HHHhh
Q 028086          205 VFTVF  209 (214)
Q Consensus       205 ~l~~~  209 (214)
                      +..+.
T Consensus       147 L~a~~  151 (161)
T COG4119         147 LMAHA  151 (161)
T ss_pred             HHHHh
Confidence            76653

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.67  E-value=1.5e-07  Score=78.86  Aligned_cols=106  Identities=22%  Similarity=0.274  Sum_probs=64.6

Q ss_pred             ceEEEEEEec-CC--cEEEEeecCC----CCCeecCCC------CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecC
Q 028086           68 RNVGICLINS-SK--KIFAASRLDI----PDSWQMPQN------EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDF  132 (214)
Q Consensus        68 ~~v~vvI~~~-~g--~vLL~rR~~~----~g~W~lPgG------Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~  132 (214)
                      -+|.+.+++. +|  +|||.+|+..    +|.-++|||      ++-.++|.||..||.|++.  +.+++..+..+.-. 
T Consensus        44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~-  122 (246)
T KOG3069|consen   44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRS-  122 (246)
T ss_pred             ccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeecc-
Confidence            3455555655 33  7999998765    588899999      7788999999999999994  45555544332210 


Q ss_pred             CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                        +            +.-.....|+... .-.....+     ...|+..+.|+|++++..-.
T Consensus       123 --~------------~~v~p~v~~l~~~-~~l~~~~l-----n~gEv~~~F~VPL~~ll~~~  164 (246)
T KOG3069|consen  123 --G------------WSVFPVVGFLSDK-KILPSLRL-----NSGEVESAFWVPLTDLLLPK  164 (246)
T ss_pred             --C------------cccceeEEEEecc-cccccccC-----CchheeeeeeeeHHHHhhhh
Confidence              0            0000111111111 00122333     34699999999999987543

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.18  E-value=4e-06  Score=68.74  Aligned_cols=113  Identities=27%  Similarity=0.444  Sum_probs=71.8

Q ss_pred             ccceEEEEEEecCCcEEEEeecCC----CCCeec---------CCC------CCHHHHHHHHHHHHhCCCcceee-eecc
Q 028086           66 YRRNVGICLINSSKKIFAASRLDI----PDSWQM---------PQN------EDPKVAALRELKEETGVSSAEVL-AEVP  125 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~l---------PgG------Es~~eAA~REl~EETGl~~~~~l-~~~~  125 (214)
                      -+++.+|+++|.+|++||++|+..    |+.|.-         |++      .....||.|-|.-|+||....+- ..+.
T Consensus        51 LHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~  130 (225)
T KOG0142|consen   51 LHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFN  130 (225)
T ss_pred             hhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcc
Confidence            478899999999999999999875    466642         333      35789999999999999843321 1111


Q ss_pred             --ceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          126 --YWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       126 --~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                        ..+.|..+.+      ..|+     ....-|++-+.+ +..+++     +++|+.+++||+.+|+.+++.
T Consensus       131 ~ltrihYkA~sd------g~wG-----EhEiDYiL~~~~-~~~~nP-----npnEv~e~ryvs~eelkel~~  185 (225)
T KOG0142|consen  131 FLTRIHYKAPSD------GIWG-----EHEIDYILFLVK-DVTLNP-----NPNEVSEIRYVSREELKELVA  185 (225)
T ss_pred             cceeeeeecCCC------CCcc-----cceeeEEEEEec-cCCCCC-----ChhhhhHhheecHHHHHHHHh
Confidence              2223332322      2233     322223333332 222333     356999999999999988876

>PLN02839 nudix hydrolase

Probab=98.07  E-value=3.5e-05  Score=69.02  Aligned_cols=99  Identities=15%  Similarity=0.130  Sum_probs=59.8

Q ss_pred             CcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCcc---eeeeeccceEEecCCchhhhhhccccC
Q 028086           79 KKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSSA---EVLAEVPYWLTYDFPPEVREKLKHQWG  145 (214)
Q Consensus        79 g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~~---~~l~~~~~~~~~~~p~~~~~~l~~~~~  145 (214)
                      +++++.||+..    ||+|+. .+|     |++.++++||.+||.||...   ....  .+.+.|.+....         
T Consensus       218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~--~G~VsY~~~~~~---------  286 (372)
T PLN02839        218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIA--VGAVSYMDIDQY---------  286 (372)
T ss_pred             eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceE--eEEEEEEEEcCC---------
Confidence            47999999765    588864 333     99999999999999999831   2221  123333321110         


Q ss_pred             CCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          146 GDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       146 ~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                       ..  +....|++.+.-. .++.+.   .++.|+.++.+++++|+.+.+.
T Consensus       287 -g~--~~evly~YDLeLP-~df~P~---~qDGEVe~F~Lm~v~EV~~~l~  329 (372)
T PLN02839        287 -CF--KRDVLFCYDLELP-QDFVPK---NQDGEVESFKLIPVAQVANVIR  329 (372)
T ss_pred             -cc--ccCEEEEeeeecC-CccccC---CCccceeEEEEecHHHHHHHHH
Confidence             11  1223334433311 122222   2467999999999999987654

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=97.86  E-value=1.8e-05  Score=59.16  Aligned_cols=94  Identities=20%  Similarity=0.316  Sum_probs=47.8

Q ss_pred             EEEEecCCcEEEEeecCCC---CCeecCCC----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhcc
Q 028086           72 ICLINSSKKIFAASRLDIP---DSWQMPQN----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKH  142 (214)
Q Consensus        72 vvI~~~~g~vLL~rR~~~~---g~W~lPgG----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~  142 (214)
                      +++++.+|++||.||.+.+   |.|+||.-    ++..+++.+.+.+..|+..  .+.++.    +.+.|          
T Consensus         2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----v~H~f----------   67 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDEEDDEEELEEWLEEQLGLSIRSVEPLGT----VKHVF----------   67 (114)
T ss_dssp             EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SSS-CHHHHHHHTCCSSS-EEEE-S-SEE----EEEE-----------
T ss_pred             EEEEEeCCEEEEEECCCCChhhcCcccCEeCccCCCCHHHHHHHHHHHcCCChhhheecCc----EEEEc----------
Confidence            5677899999999998763   99999987    2334455555556667652  122222    22221          


Q ss_pred             ccCCCccCc--eEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          143 QWGGDWKGQ--AQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       143 ~~~~~~~~~--~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                            +|.  ..++|.+.+......           +..+..|++++++.++..|
T Consensus        68 ------SH~~~~~~~~~~~~~~~~~~-----------~~~~~~W~~~~~l~~~~~p  106 (114)
T PF14815_consen   68 ------SHRRWTIHVYEVEVSADPPA-----------EPEEGQWVSLEELDQYPLP  106 (114)
T ss_dssp             ------SSEEEEEEEEEEEEE-SS---------------TTEEEEEGGGGGGS---
T ss_pred             ------cceEEEEEEEEEEecCCCCC-----------CCCCcEEEEHHHHhhCCCC
Confidence                  233  234455555432110           2457899999999876654

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.14  E-value=8.6e-05  Score=65.18  Aligned_cols=75  Identities=21%  Similarity=0.336  Sum_probs=51.6

Q ss_pred             CcccccccccccccccccCCCCCCccceEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCC
Q 028086           42 NLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGV  115 (214)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl  115 (214)
                      +||++-.+.......+---.+++..-+..+++|+|.. .++||++.... ..|.+|.|     |+-.++|+|||.||||.
T Consensus        57 ~c~~~~~~~~~~~e~~~~f~~yk~~iPv~ga~ild~~~sr~llv~g~qa-~sw~fprgK~~kdesd~~caiReV~eetgf  135 (348)
T KOG2937|consen   57 QCPLLWPWKNEKDEAFVDFAPYKARIPVRGAIILDEKRSRCLLVKGWQA-SSWSFPRGKISKDESDSDCAIREVTEETGF  135 (348)
T ss_pred             CCccccchhhHHHHHHHhhccccCCCCCchHhhhhhhhhhhheeeceec-ccccccCccccccchhhhcchhcccchhhc
Confidence            4555544333322333323344444566688888866 47888886653 46999999     88999999999999999


Q ss_pred             Cc
Q 028086          116 SS  117 (214)
Q Consensus       116 ~~  117 (214)
                      +.
T Consensus       136 D~  137 (348)
T KOG2937|consen  136 DY  137 (348)
T ss_pred             CH
Confidence            84

>PRK10880 adenine DNA glycosylase; Provisional

Probab=96.15  E-value=0.12  Score=46.62  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=31.0

Q ss_pred             EEEEEEecCCcEEEEeecCC---CCCeecCCCCCHHHHHHHHHHHHhCCC
Q 028086           70 VGICLINSSKKIFAASRLDI---PDSWQMPQNEDPKVAALRELKEETGVS  116 (214)
Q Consensus        70 v~vvI~~~~g~vLL~rR~~~---~g~W~lPgGEs~~eAA~REl~EETGl~  116 (214)
                      ..++++..+|++||.+|...   .|.|+||+.++..  ..++..|+.|+.
T Consensus       233 ~~~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~~~~~--~~~~~~~~~~~~  280 (350)
T PRK10880        233 GYFLLLQHGDEVWLEQRPPSGLWGGLFCFPQFADEE--ELRQWLAQRGIA  280 (350)
T ss_pred             EEEEEEEECCEEEEEECCccChhhccccCCCCcchh--hHHHHHHhcCCc
Confidence            34455556789999999765   3899999764322  246666888875

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=96.02  E-value=0.051  Score=43.56  Aligned_cols=98  Identities=23%  Similarity=0.364  Sum_probs=53.3

Q ss_pred             EEEEEecCCcEEEEeecCCC------CCeec-CCC--------CCH----HHHHHHHHHHHhCCCc-----ceeeeeccc
Q 028086           71 GICLINSSKKIFAASRLDIP------DSWQM-PQN--------EDP----KVAALRELKEETGVSS-----AEVLAEVPY  126 (214)
Q Consensus        71 ~vvI~~~~g~vLL~rR~~~~------g~W~l-PgG--------Es~----~eAA~REl~EETGl~~-----~~~l~~~~~  126 (214)
                      -++|.|++ +||+-.|....      +..++ .||        ++.    .-.+.|||.||.|+..     ...++.+..
T Consensus        65 Yvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd  143 (203)
T COG4112          65 YVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND  143 (203)
T ss_pred             EEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC
Confidence            45565655 89999986542      34443 234        333    3348899999999982     223332211


Q ss_pred             eEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhh
Q 028086          127 WLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILE  192 (214)
Q Consensus       127 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~  192 (214)
                          + .+.             .+..+.=.++...+...++..     .+.+..+++|+..+++..
T Consensus       144 ----d-~ne-------------VgkVHiG~lf~~~~k~ndvev-----KEkd~~~~kwik~~ele~  186 (203)
T COG4112         144 ----D-TNE-------------VGKVHIGALFLGRGKFNDVEV-----KEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             ----C-Ccc-------------cceEEEEEEEEeeccccceee-----eecceeeeeeeeHHHHHH
Confidence                1 111             233332233333332222332     234678899999999876

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=95.27  E-value=0.042  Score=46.13  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=29.3

Q ss_pred             cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhC
Q 028086           80 KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETG  114 (214)
Q Consensus        80 ~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETG  114 (214)
                      +++.++|.+ .+.|.+|||     |-+-.+.+||+.||.=
T Consensus       140 e~vavkr~d-~~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRPD-NGEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecCC-CCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            466777877 489999999     9999999999999973

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=94.85  E-value=0.12  Score=42.45  Aligned_cols=50  Identities=22%  Similarity=0.310  Sum_probs=36.5

Q ss_pred             CccceEEEEE-EecCC--cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCC
Q 028086           65 GYRRNVGICL-INSSK--KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVS  116 (214)
Q Consensus        65 ~~~~~v~vvI-~~~~g--~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~  116 (214)
                      +.|+.|.+|+ +...+  .|||.+...  ..|.+|||     |+..+...|.|.+-.|..
T Consensus        41 GmRrsVe~Vllvh~h~~PHvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~   98 (188)
T PF13869_consen   41 GMRRSVEGVLLVHEHGHPHVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE   98 (188)
T ss_dssp             SSEEEEEEEEEEEETTEEEEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred             CCceEEEEEEEEecCCCcEEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence            4577775554 45555  699998654  58999999     999999999999999986

...

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=93.74  E-value=0.44  Score=40.77  Aligned_cols=102  Identities=15%  Similarity=0.261  Sum_probs=60.3

Q ss_pred             EEEEeec-CCCCCeecCCC------CCHHHHHHHHHHHHhCCCc-ceeeeecc-ceEEecCCchhhhhhccccCCCc-cC
Q 028086           81 IFAASRL-DIPDSWQMPQN------EDPKVAALRELKEETGVSS-AEVLAEVP-YWLTYDFPPEVREKLKHQWGGDW-KG  150 (214)
Q Consensus        81 vLL~rR~-~~~g~W~lPgG------Es~~eAA~REl~EETGl~~-~~~l~~~~-~~~~~~~p~~~~~~l~~~~~~~~-~~  150 (214)
                      +||++|. +..+.|.||.+      +++..+|.|+|++=.|=.. .-+++..+ .++.+.+|.+...        .. .+
T Consensus       141 yLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~--------e~~~~  212 (263)
T KOG4548|consen  141 YLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTT--------EEPVS  212 (263)
T ss_pred             EEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccc--------ccccc
Confidence            7777754 44589999999      8999999999999999763 23333321 2234445544311        00 12


Q ss_pred             ceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC
Q 028086          151 QAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK  198 (214)
Q Consensus       151 ~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~  198 (214)
                      ....+|-+.+..+. ....       .-..++.|++-+++.+.+.++.
T Consensus       213 sk~ff~k~~lv~~~-~~kn-------~n~edfvWvTkdel~e~l~~~~  252 (263)
T KOG4548|consen  213 SKVFFFKASLVANS-NQKN-------QNKEDFVWVTKDELGEKLPKFA  252 (263)
T ss_pred             ceeEEeeeeecccc-chhc-------ccccceEEechHHHhhhcchHH
Confidence            22333333333221 1111       1344699999999998887554

>PRK13910 DNA glycosylase MutY; Provisional

Probab=91.51  E-value=1.9  Score=37.90  Aligned_cols=27  Identities=11%  Similarity=0.049  Sum_probs=18.9

Q ss_pred             EEEEecCCcEEEEeecCC--CCCeecCCCC
Q 028086           72 ICLINSSKKIFAASRLDI--PDSWQMPQNE   99 (214)
Q Consensus        72 vvI~~~~g~vLL~rR~~~--~g~W~lPgGE   99 (214)
                      ++++ .+|++||.+|...  .|.|+||+.|
T Consensus       191 ~~~~-~~~~~ll~kr~~~l~~gl~~fP~~~  219 (289)
T PRK13910        191 GVVI-QNNQIALEKIEQKLYLGMHHFPNLK  219 (289)
T ss_pred             EEEE-ECCEEEEEECCCchhcccccCCCCh
Confidence            3444 4678999988532  4899999753

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=90.82  E-value=0.88  Score=39.01  Aligned_cols=98  Identities=17%  Similarity=0.181  Sum_probs=57.3

Q ss_pred             cEEEEeecCCC----CCee-c-CCC----CCHHHHHHHHHHHHhCCCc---ceeeeeccceEEecCCchhhhhhccccCC
Q 028086           80 KIFAASRLDIP----DSWQ-M-PQN----EDPKVAALRELKEETGVSS---AEVLAEVPYWLTYDFPPEVREKLKHQWGG  146 (214)
Q Consensus        80 ~vLL~rR~~~~----g~W~-l-PgG----Es~~eAA~REl~EETGl~~---~~~l~~~~~~~~~~~p~~~~~~l~~~~~~  146 (214)
                      +|.+.||+...    |.|+ + -||    -.+.++|+.|..||..+..   ..+++.  +...|-+-..      +.   
T Consensus       149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~--G~VSy~~~es------r~---  217 (306)
T KOG4313|consen  149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSA--GCVSYYKFES------RQ---  217 (306)
T ss_pred             EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceec--ceeEEEeeeh------hh---
Confidence            68888998764    5554 2 344    7899999999999999984   223322  2233321111      11   


Q ss_pred             CccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          147 DWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       147 ~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                      ......+++|-..+..   ++.+.   ..+.|+..+.-+++.|..+.+
T Consensus       218 ~~~pe~qYVfDL~l~~---d~iP~---~nDGEV~~F~Lltl~~~v~~l  259 (306)
T KOG4313|consen  218 GLFPETQYVFDLELPL---DFIPQ---NNDGEVQAFELLTLKDCVERL  259 (306)
T ss_pred             ccCccceEEEeccCch---hhcCC---CCCCceeeEeeecHHHHHHHH
Confidence            1223344444443331   22222   234589999999999987554

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=88.46  E-value=1.4  Score=38.40  Aligned_cols=40  Identities=23%  Similarity=0.234  Sum_probs=26.9

Q ss_pred             EEEEEecCCcEEEEeecCC---CCCeecCCCCCHHHHHHHHHHHH
Q 028086           71 GICLINSSKKIFAASRLDI---PDSWQMPQNEDPKVAALRELKEE  112 (214)
Q Consensus        71 ~vvI~~~~g~vLL~rR~~~---~g~W~lPgGEs~~eAA~REl~EE  112 (214)
                      .++|.+.+|++|+.+|...   .|.|+||+.|..  .+++|+.-+
T Consensus       231 ~~~~~~~~~~~~~~~r~~~~~~~gl~~~p~~~~~--~~~~~~~~~  273 (275)
T TIGR01084       231 FLVLQNYDGEVLLEQRPEKGLWGGLYCFPQFEDE--DSLAFLLAQ  273 (275)
T ss_pred             EEEEEeCCCeEEEEeCCCCchhhccccCCCCCch--hHHHHHHHh
Confidence            3444566789999999765   399999987554  335555443

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=85.01  E-value=12  Score=33.15  Aligned_cols=81  Identities=23%  Similarity=0.154  Sum_probs=46.3

Q ss_pred             CCHHHHHHHHHHHHhCCCc-ceeeeeccceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcC
Q 028086           99 EDPKVAALRELKEETGVSS-AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP  177 (214)
Q Consensus        99 Es~~eAA~REl~EETGl~~-~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~  177 (214)
                      -+..+-|.||..||+|.+. .+-+...   ..|  -+++          +-.|..+..|.++++..... .......+++
T Consensus       297 ~s~~e~a~~e~veecGYdlp~~~~k~v---a~y--~sGV----------G~SG~~QTmfy~eVTdA~rs-gpGgg~~ee~  360 (405)
T KOG4432|consen  297 FSDPEKAARESVEECGYDLPEDSFKLV---AKY--ISGV----------GQSGDTQTMFYVEVTDARRS-GPGGGEKEED  360 (405)
T ss_pred             cccHHHHHHHHHHHhCCCCCHHHHhhh---hee--eccc----------CCcCCeeEEEEEEeehhhcc-CCCCCccccc
Confidence            4678899999999999983 1111111   011  1111          22456677777877632111 1111112455


Q ss_pred             ceeeEEEeChhHHhhcCc
Q 028086          178 EFGEWKWMSPEQILERAV  195 (214)
Q Consensus       178 E~~~~~Wv~~~el~~~~~  195 (214)
                      |..+..-++++++..+..
T Consensus       361 E~IEvv~lsle~a~~~~~  378 (405)
T KOG4432|consen  361 EDIEVVRLSLEDAPSLYR  378 (405)
T ss_pred             ceeeEEEechhhhhHHHh
Confidence            777888899999987654

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=84.36  E-value=3  Score=37.40  Aligned_cols=48  Identities=23%  Similarity=0.408  Sum_probs=33.1

Q ss_pred             cceEEEEEEecCCcEEEEeecCCC---CCeecCCCCCHHHHHHHHHHHHhCCC
Q 028086           67 RRNVGICLINSSKKIFAASRLDIP---DSWQMPQNEDPKVAALRELKEETGVS  116 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~~---g~W~lPgGEs~~eAA~REl~EETGl~  116 (214)
                      +..++.++.+.+|+++|.+|...+   |.|++|..|+..  -..+..-+.|+.
T Consensus       235 ~~~~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~--~~~~~~~~~~~~  285 (342)
T COG1194         235 RRFAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA--DLLDWLAADGLA  285 (342)
T ss_pred             hheeeEEEEccCcchhhhhCcccCceecccccccccccc--hhhhHhhhcccc
Confidence            566777888999999999998764   899999984322  233333344443

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=84.03  E-value=2.8  Score=33.99  Aligned_cols=50  Identities=24%  Similarity=0.380  Sum_probs=38.0

Q ss_pred             CCccceEE-EEEEecC--CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCC
Q 028086           64 EGYRRNVG-ICLINSS--KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGV  115 (214)
Q Consensus        64 ~~~~~~v~-vvI~~~~--g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl  115 (214)
                      .+.|+.|- ++|+.+.  ..|||.+-..  ..+.+|||     |+-.+...|-+-|-.|-
T Consensus        66 ~gmRrsvegvlivheH~lPHvLLLQig~--tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr  123 (221)
T KOG1689|consen   66 EGMRRSVEGVLIVHEHNLPHVLLLQIGN--TFFKLPGGRLRPGEDEADGLKRLLTESLGR  123 (221)
T ss_pred             hhhhheeeeeEEEeecCCCeEEEEeeCC--EEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence            34577774 4555544  4788887643  57899999     99999999999999993

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
1f3y_A	165	Solution Structure Of The Nudix Enzyme Diadenosine		2e-71
2kdv_A	164	Solution Structure Of Rna Pyrophosphohydrolase Rpph		2e-16
2kdw_A	164	Solution Structure Of Rpph Mutant E53a From Escheri		7e-16
2o1c_A	150	Structure Of The E. Coli Dihydroneopterin Triphosph		4e-04

>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine Tetraphosphate Hydrolase From Lupinus Angustifolius L. Length = 165

Iteration: 1
 Score =  265 bits (676), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 123/161 (76%), Positives = 143/161 (88%), Gaps = 5/161 (3%)
Query: 58  SMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEE 112
           SMD+PPEGYRRNVGICL+N+ KKIFAASRLDIPD+WQMPQ      EDP+ AA+REL+EE
Sbjct: 5   SMDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREE 64
Query: 113 TGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGD 172
           TGV+SAEV+AEVPYWLTYDFPP+VREKL  QWG DWKGQAQKWFL KFTG+++EINLLGD
Sbjct: 65  TGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGD 124
Query: 173 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213
            SEKPEFGEW W++PEQ+++  V+FKKPVYKEV +VF PHL
Sbjct: 125 GSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPHL 165

>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From Escherichia Coli Length = 164

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 77/158 (48%), Gaps = 21/158 (13%)
Query: 64  EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA 118
           +GYR NVGI + N   ++  A R     SWQ PQ      E  + A  REL EE G+S  
Sbjct: 5   DGYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRK 63
Query: 119 EV--LAEVPYWLTYDFPPEVREKLKHQWGGDWK----GQAQKWFLLKFTGKEEEINLLGD 172
           +V  LA    WL Y  P  +      +W  D K    GQ QKWFLL+    + EIN+   
Sbjct: 64  DVRILASTRNWLRYKLPKRL-----VRW--DTKPVCIGQKQKWFLLQLVSGDAEINM--Q 114
Query: 173 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 210
            S  PEF  W+W+S    + + V FK+ VY+ V   F 
Sbjct: 115 TSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFA 152

>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia Coli Length = 164

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 64  EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA 118
           +GYR NVGI + N   ++  A R     SWQ PQ      E  + A  R L EE G+S  
Sbjct: 5   DGYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRALFEEVGLSRK 63
Query: 119 EV--LAEVPYWLTYDFPPEVREKLKHQWGGDWK----GQAQKWFLLKFTGKEEEINLLGD 172
           +V  LA    WL Y  P  +      +W  D K    GQ QKWFLL+    + EIN+   
Sbjct: 64  DVRILASTRNWLRYKLPKRL-----VRW--DTKPVCIGQKQKWFLLQLVSGDAEINM--Q 114
Query: 173 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT 210
            S  PEF  W+W+S    + + V FK+ VY+ V   F 
Sbjct: 115 TSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFA 152

>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate Pyrophosphohydrolase Length = 150

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 66  YRRNVGICLI---NSSKKIFAASRLDIPDSWQ-----MPQNEDPKVAALRELKEETGVS- 116
           Y+R V I ++     +K++    R D PD WQ     + + E    AA+RE+KEE  +  
Sbjct: 6   YKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDV 65
Query: 117 SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKF 160
            AE L  +    T +F  E+   L+H++        + WF L  
Sbjct: 66  VAEQLTLIDCQRTVEF--EIFSHLRHRYAPGVTRNTESWFCLAL 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	2e-86
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	5e-73
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	1e-35
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	2e-23
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	3e-22
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	5e-19
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	1e-10
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	5e-10
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	6e-09
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	2e-08
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	3e-08
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	5e-08
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	5e-08
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	8e-08
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	4e-07
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	7e-07
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	9e-07
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	4e-06
3grn_A	153	MUTT related protein; structural genomics, hydrola	6e-06
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	8e-06
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	1e-05
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	1e-05
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	2e-05
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	3e-05
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	9e-05
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	1e-04
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	1e-04
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	1e-04
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	2e-04
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	2e-04
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	2e-04
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	2e-04
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	3e-04
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	3e-04
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	3e-04
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	4e-04
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	4e-04
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	4e-04
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	6e-04
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	7e-04
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	8e-04
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	8e-04
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	8e-04

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score =  251 bits (643), Expect = 2e-86
 Identities = 123/161 (76%), Positives = 143/161 (88%), Gaps = 5/161 (3%)

Query: 58  SMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEE 112
           SMD+PPEGYRRNVGICL+N+ KKIFAASRLDIPD+WQMPQ      EDP+ AA+REL+EE
Sbjct: 5   SMDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREE 64

Query: 113 TGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGD 172
           TGV+SAEV+AEVPYWLTYDFPP+VREKL  QWG DWKGQAQKWFL KFTG+++EINLLGD
Sbjct: 65  TGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGD 124

Query: 173 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213
            SEKPEFGEW W++PEQ+++  V+FKKPVYKEV +VF PHL
Sbjct: 125 GSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPHL 165

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score =  217 bits (555), Expect = 5e-73
 Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 13/159 (8%)

Query: 63  PEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEETGVS- 116
            +GYR NVGI + N   ++  A R     SWQ PQ      E  + A  REL EE G+S 
Sbjct: 4   DDGYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSR 62

Query: 117 -SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSE 175
               +LA    WL Y  P  +   ++        GQ QKWFLL+    + EIN+    S 
Sbjct: 63  KDVRILASTRNWLRYKLPKRL---VRWDTKPVCIGQKQKWFLLQLVSGDAEINM--QTSS 117

Query: 176 KPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 214
            PEF  W+W+S    + + V FK+ VY+ V   F   + 
Sbjct: 118 TPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVM 156

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score =  121 bits (306), Expect = 1e-35
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 25/151 (16%)

Query: 59  MDAPPEGYRRNVGICLI---NSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELK 110
           M      Y+R V I ++     +K++    R D PD WQ         E    AA+RE+K
Sbjct: 1   MKDKV--YKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVK 58

Query: 111 EETGVSSAEV---LAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEI 167
           EE  +        L +    + ++        L+H++        + WF L     E +I
Sbjct: 59  EEVTIDVVAEQLTLIDCQRTVEFEIFSH----LRHRYAPGVTRNTESWFCLAL-PHERQI 113

Query: 168 NLLGDKSEKPEFGEWKWMSPEQILERAVDFK 198
                     E   +KW+           + 
Sbjct: 114 VF-------TEHLAYKWLDAPAAAALTKSWS 137

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 90.6 bits (225), Expect = 2e-23
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 27/136 (19%)

Query: 66  YRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEETGVSSAEV 120
           +RR +   + N++ +       D    W  P+      ED    ALR  +EE G+ + ++
Sbjct: 16  FRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75

Query: 121 --LAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPE 178
             +      L Y                  K +   ++L +    + EI L        E
Sbjct: 76  TIIEGFKRELNYV--------------ARNKPKTVIYWLAEVKDYDVEIRL------SHE 115

Query: 179 FGEWKWMSPEQILERA 194
              ++W+  E+  + A
Sbjct: 116 HQAYRWLGLEEACQLA 131

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 87.3 bits (217), Expect = 3e-22
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 31/136 (22%)

Query: 86  RLDIPDSWQMPQ-----NEDPKVAALRELKEETGVSSAEV--LAEVPYWLTYDFPPEVRE 138
               P  W  P+      ED   AA+RE KEE  ++  ++    +    L Y+       
Sbjct: 25  ASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYE------- 77

Query: 139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK 198
                     K ++ K++L K     +++ L        E   WKW   E  ++ A    
Sbjct: 78  -------AKGKPKSVKYWLAKLNN-PDDVQL------SHEHQNWKWCELEDAIKIA---D 120

Query: 199 KPVYKEVFTVFTPHLQ 214
                 +   F+  L 
Sbjct: 121 YAEMGSLLRKFSAFLA 136

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 79.2 bits (195), Expect = 5e-19
 Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 21/142 (14%)

Query: 70  VGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEETGVSSAEVLAEV 124
           +      ++ +     R D  D WQ         E     A RE  EE  +     +  +
Sbjct: 11  IPFIKTEANYQFGVLHRTD-ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSL 69

Query: 125 PYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKW 184
                   P        H          +  F +  T    ++ L        E  E +W
Sbjct: 70  DSH--ASIPN------FHFSFNKPYVVPEYCFAIDLTSCSYQVTLS------LEHSELRW 115

Query: 185 MSPEQILERAV-DFKKPVYKEV 205
           +S E  ++    D  K    E+
Sbjct: 116 VSYESAIQLLEWDSNKTALYEL 137

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 26/153 (16%)

Query: 47  HHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIF--AASRLDIPDSWQMPQ-----NE 99
           HH + +   + ++      ++  V   + + S +       R  + + W+ P       E
Sbjct: 6   HHSSGVDLGTENLYFQSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEE 65

Query: 100 DPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLK 159
           D    A+RE+ EETG+  +E  + +           +R++  +       G++  + + +
Sbjct: 66  DIGDTAVREVFEETGI-KSEFRSVL----------SIRQQHTNPGA---FGKSDMYIICR 111

Query: 160 FTGKEEEINLLGDKSEKPEFGEWKWMSPEQILE 192
                  IN   +     E    +WM    + +
Sbjct: 112 LKPYSFTINFCQE-----ECLRCEWMDLNDLAK 139

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 56.6 bits (136), Expect = 5e-10
 Identities = 24/197 (12%), Positives = 55/197 (27%), Gaps = 38/197 (19%)

Query: 28  FTSPNYPHKLPKSTNLPLVHHQNQICSSSYSMDAPPE-------GYRRNV---GICLINS 77
           F       +LP              C   +      E        Y+  +   G  +++ 
Sbjct: 53  FIRAQND-QLPSLGLRVFSAKLFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDM 111

Query: 78  S-KKIFAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYD 131
           S ++            W  P     ++E     A+RE+ EETG   +  +    +     
Sbjct: 112 SMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMT- 170

Query: 132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL 191
                            +GQ  + +++     +        K    E  + +W +   + 
Sbjct: 171 ----------------IRGQNVRLYIIPGISLDTRFESRTRK----EISKIEWHNLMDLP 210

Query: 192 ERAVDFKKPVYKEVFTV 208
               +  + +  + + V
Sbjct: 211 TFKKNKPQTMKNKFYMV 227

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 52.2 bits (125), Expect = 6e-09
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 22/131 (16%)

Query: 70  VGICLINSSKKIFAASRLDIP--DSWQMP-----QNEDPKVAALRELKEETGVSSAEVLA 122
           +   + NS  +     R + P    W +P     ++E  + A  R    E G+       
Sbjct: 21  LDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAG 80

Query: 123 EVPYWLTYDFP-PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGE 181
           +      + +            +              +F   EEE+ L  ++ +     +
Sbjct: 81  QFYGVWQHFYDDNFSGTDFTTHY---------VVLGFRFRVSEEELLLPDEQHD-----D 126

Query: 182 WKWMSPEQILE 192
           ++W++ + +L 
Sbjct: 127 YRWLTSDALLA 137

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 27/128 (21%)

Query: 71  GICLINSSKKIFAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVLAEVP 125
                 +  KI      +  DSW  P     ++E+     +RE+KEE G    + + +  
Sbjct: 9   AAIFNENLSKILLVQGTE-SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQ 67

Query: 126 YWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWM 185
           +          +  L       +  + Q            EI+            + +W 
Sbjct: 68  FIERNIQGKNYKIFLISGVSEVFNFKPQ---------VRNEID------------KIEWF 106

Query: 186 SPEQILER 193
             ++I + 
Sbjct: 107 DFKKISKT 114

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 29/108 (26%)

Query: 91  DSWQMP-----QNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWG 145
             W  P       E  + AA+RE+ EETGV  AEVL  +  + T    P+  E+  H   
Sbjct: 24  GFWVFPKGHPEPGESLEEAAVREVWEETGV-RAEVLLPL--YPTRYVNPKGVEREVH--- 77

Query: 146 GDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193
                    WFL++  G            E        W SPE+    
Sbjct: 78  ---------WFLMRGEGAPR-------LEE--GMTGAGWFSPEEARAL 107

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 50.4 bits (120), Expect = 5e-08
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 33/155 (21%)

Query: 63  PEGYRRNVG-ICL-INSSKKIFAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGV 115
            +GY++    +C    S +++   S    PD W +P       E+P VAA+RE+ EE GV
Sbjct: 36  GDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95

Query: 116 SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSE 175
                L  +                        +      ++L  T       +L D  +
Sbjct: 96  KG--TLGRLVGIFEN----------------QERKHRTYVYVLIVTE------VLEDWED 131

Query: 176 KPEFG-EWKWMSPEQILERAVDFKKPVYKEVFTVF 209
               G + +W   E  ++  + + KPV    F   
Sbjct: 132 SVNIGRKREWFKIEDAIKV-LQYHKPVQASYFETL 165

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 50.6 bits (120), Expect = 8e-08
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 17/115 (14%)

Query: 91  DSWQMP-----QNEDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKLKHQ 143
           D W  P     QNE  + AA+RE+ EETG        L EV Y L+ +      +K +H 
Sbjct: 49  DDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEE-----GKKTRHS 103

Query: 144 WGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEK-----PEFGEWKWMSPEQILER 193
                  +   +++ +    ++  +LL            E  +  W+S  +  + 
Sbjct: 104 HDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKI 158

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 35/166 (21%)

Query: 43  LPLVHHQNQICSSSYSMDAPPEG-YRRNVGICLINSSKKIF----AASRLDIPDSWQMP- 96
           + +V+ +N++ + +       +    R   I + +   KI       ++  +P       
Sbjct: 12  VDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATA 71

Query: 97  -----QNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQ 151
                 +E    +A RE +EE G++     AE      ++            WG  +   
Sbjct: 72  GGVVQADEQLLESARREAEEELGIAGVP-FAEHG-QFYFEDKNC------RVWGALFSCV 123

Query: 152 AQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF 197
           +                L   +    E  E  W++PE+I  R  +F
Sbjct: 124 S-----------HGPFAL--QED---EVSEVCWLTPEEITARCDEF 153

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 17/128 (13%)

Query: 70  VGICLINSSKKIFAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVLAEV 124
           V   ++  + K+       +   +  P      NE P  A  RE +EETG+   E +   
Sbjct: 3   VTSGVLVENGKVLLVKHKRL-GVYIYPGGHVEHNETPIEAVKREFEEETGI-VVEPIGFT 60

Query: 125 PYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKW 184
              +  +        +  +    +  +    F L +  K              +    +W
Sbjct: 61  YGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVG----------GDLKNGEW 110

Query: 185 MSPEQILE 192
           +   +I  
Sbjct: 111 IDVREIDR 118

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 46.4 bits (110), Expect = 9e-07
 Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 25/158 (15%)

Query: 47  HHQNQICSSSYSMDAPPEGY---RRNVGICLINSSKKIFAASRLD----IPDSWQMP--- 96
           HH +       + +   +     +R +   LI +          D     P  W +    
Sbjct: 4   HHHHSSGVDLGTENLYFQSNAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGG 63

Query: 97  --QNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQK 154
               E  + A  RE++EE G    +++       T+     ++     +          +
Sbjct: 64  VEPGERIEEALRREIREELGE---QLILSDITPWTFRDDIRIKTYADGRQE--------E 112

Query: 155 WFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILE 192
            +++         N   D     EF ++ W+ PE++  
Sbjct: 113 IYMIYLIFDCVSAN--RDICINDEFQDYAWVKPEELAL 148

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 33/162 (20%)

Query: 43  LPLVHHQNQICSSSYSMDAPPEG-YRRNVGICLINSSKKIF----AASRLDIPDSWQMP- 96
           L LV+ ++++       D        R V   L NS  +++    + S+   P++  +  
Sbjct: 9   LDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSV 68

Query: 97  -----QNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQ 151
                  E  + A  RE +EE  V    +       L    P +        +   ++ +
Sbjct: 69  GGAVQSGETYEEAFRREAREELNVEIDAL---SWRPLASFSPFQTTL---SSFMCVYELR 122

Query: 152 AQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193
           +           +       + +   +    +W++PE +L R
Sbjct: 123 S-----------DATPIF--NPN---DISGGEWLTPEHLLAR 148

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 36/144 (25%)

Query: 58  SMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDS----WQMP-----QNEDPKVAALRE 108
           S++ P   Y  +V   + N   +     R +   +    W +P      +E  K    RE
Sbjct: 2   SLEKP---YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVARE 58

Query: 109 LKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEIN 168
           + EETG+ +            ++                     +K   + F G      
Sbjct: 59  VWEETGI-TMVPGDIAGQV-NFELT------------------EKKVIAIVFDGGYVV-- 96

Query: 169 LLGDKSEKPEFGEWKWMSPEQILE 192
              D     E  E+ W+S E+IL 
Sbjct: 97  --ADVKLSYEHIEYSWVSLEKILG 118

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 24/132 (18%)

Query: 67  RRNVGICLINSSKKIFAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVL 121
           R    I +           +     ++ +P       E  + A  RE+ EE G+ S E+ 
Sbjct: 18  RYAAYIIVSKPENNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGI-SVEIG 75

Query: 122 AEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGE 181
             +     Y +                      +++     +        +  E      
Sbjct: 76  CYLGEADEYFYSNH---------RQTAYYNPGYFYVANTWRQL------SEPLE--RTNT 118

Query: 182 WKWMSPEQILER 193
             W++PE+ +  
Sbjct: 119 LHWVAPEEAVRL 130

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 35/136 (25%)

Query: 70  VGICLINSSKKIFAASRLDIPDS------WQMP-----QNEDPKVAALRELKEETG--VS 116
            G+ L+N    I       IP        W +P       E+P+ AA+RE  EETG  V 
Sbjct: 16  AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVR 75

Query: 117 SAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEK 176
             + L          FP            G    +    +L +    +       D    
Sbjct: 76  PVKFLGAYLGR----FPD-----------GVLILRH--VWLAEPEPGQTLAPAFTD---- 114

Query: 177 PEFGEWKWMSPEQILE 192
            E  E  ++S E   +
Sbjct: 115 -EIAEASFVSREDFAQ 129

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 25/147 (17%), Positives = 38/147 (25%), Gaps = 35/147 (23%)

Query: 60  DAPPEGYRRNVGI----CLINSSKKIFAASRLDIPDS--WQMP-----QNEDPKVAALRE 108
            AP    R+NV        ++   ++             W +P       E    A  RE
Sbjct: 10  PAPVR-LRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQRE 68

Query: 109 LKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEIN 168
           +KEE G+       E    L+      V E+               W    F  +     
Sbjct: 69  VKEEAGLH-----CEPETLLS------VEERGPS------------WVRFVFLARPTGGI 105

Query: 169 LLGDKSEKPEFGEWKWMSPEQILERAV 195
           L   K    E  +  W     +     
Sbjct: 106 LKTSKEADAESLQAAWYPRTSLPTPLR 132

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 17/114 (14%)

Query: 91  DSWQMP-----QNEDPKVAALRELKEETGVS-SAEVLAEVPYWLTYDFP-PEVREKLKHQ 143
                       NE P+ A +RE KEE G++ +     ++    + D    ++     H 
Sbjct: 28  KKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLINPIHT 87

Query: 144 WGGDWKGQAQKW---FLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA 194
             GD           +    T  E    +        E    KW S E +    
Sbjct: 88  ILGDVSPNHSHIDFVYYATTTSFETSPEI-------GESKILKWYSKEDLKNAH 134

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 69  NVGICLINSSKKIFAASRL---DIPDSWQMP-----QNEDPKVAALRELKEETG--VSSA 118
            V   +I    KI  A R    D    W+        +E  + A +REL+EE G   +  
Sbjct: 10  EVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVG 69

Query: 119 EVLAEVPY 126
           E +A    
Sbjct: 70  EYVASHQR 77

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 27/130 (20%)

Query: 68  RNVGICLINSSKKIFAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVLA 122
           +     ++   +K+    +      W +P       E  + A +RE++EETG+   EV  
Sbjct: 23  QVRVTGILIEDEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGL---EV-- 77

Query: 123 EVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEE--EINLLGDKSEKPEFG 180
                          +  K  +  D    +     + F  +    EI L  ++ +     
Sbjct: 78  ---------------KIKKLLYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIH 122

Query: 181 EWKWMSPEQI 190
           + + +   ++
Sbjct: 123 DVQMVPINEL 132

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 10/68 (14%)

Query: 69  NVGICLINSSKKIFAASRLD---IPDSWQMP-----QNEDPKVAALRELKEETG--VSSA 118
            V    +    KI    R +   +   W+ P       E P+ A  REL EE G      
Sbjct: 23  PVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVG 82

Query: 119 EVLAEVPY 126
           E+     +
Sbjct: 83  ELKLACTH 90

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 27/129 (20%)

Query: 72  ICLINSSKKIFAASRLDIP-DSWQMP-----QNEDPKVAALRELKEETGVSSAEVLAEVP 125
            C++++  K             W  P      +E    AA REL EETG+S     A+  
Sbjct: 9   ACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGIS-----AQPQ 63

Query: 126 YWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWM 185
           +++             HQW    K     +    F  + E+I     +    +    +W+
Sbjct: 64  HFIRM-----------HQWIAPDKTP---FLRFLFAIELEQI--CPTQPHDSDIDCCRWV 107

Query: 186 SPEQILERA 194
           S E+IL+ +
Sbjct: 108 SAEEILQAS 116

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 12/70 (17%)

Query: 69  NVGICLINSSKKIFAASRL-----DIPDSWQMP-----QNEDPKVAALRELKEETG--VS 116
            V   +I   +K     R           ++ P     + E  + A  RE+ EE    + 
Sbjct: 7   EVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIE 66

Query: 117 SAEVLAEVPY 126
             E L  V +
Sbjct: 67  VGEKLLTVHH 76

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 70  VGICLINSSKKIFAASRLD---IPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVL 121
               LI+   ++  A R     +   W+ P       E P+ A +REL EE GV +    
Sbjct: 11  TAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASC 70

Query: 122 AEVPYWLTYDFP 133
                + ++ + 
Sbjct: 71  LAPLAFASHSYD 82

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 95  MPQNEDPKVAALRELKEETGVSSAE 119
           + + ED   AA REL EE G +++E
Sbjct: 41  VEKGEDLGAAAARELLEEVGGAASE 65

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 11/67 (16%)

Query: 70  VGICLINSSKKIFAASRLD---IPDSWQMP-----QNEDPKVAALRELKEETG--VSSAE 119
           VGI + N + +IF   R     + +  + P       E P+ A +REL+EE G       
Sbjct: 8   VGI-IRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFS 66

Query: 120 VLAEVPY 126
           +  ++ Y
Sbjct: 67  LFEKLEY 73

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 69  NVGICLINSSKKIFAASRLD---IPDSWQMP-----QNEDPKVAALRELKEETGV 115
            V   L++   ++    R +   +   W+ P     Q E P+ + +REL+EE GV
Sbjct: 31  VVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGV 85

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 95  MPQNEDPKVAALRELKEETG 114
           +   EDP  AA REL E+TG
Sbjct: 69  IEPGEDPLEAARRELAEQTG 88

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 45  LVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIP--DSWQMP-----Q 97
           LV   N +          P          L+  +  I    R   P  D W +P      
Sbjct: 185 LVAENNYVIEYKRLWLKAPFKPNFVTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLEC 244

Query: 98  NEDPKVAALRELKEETG--VSSAEVLAEVPYWLTYDFP 133
           +E    A +REL EET   ++  ++         +D+P
Sbjct: 245 DETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYP 282

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 22/146 (15%), Positives = 37/146 (25%), Gaps = 34/146 (23%)

Query: 66  YRRNVGI-CLINSSKKIFAASRLDIPDS--WQMP-----QNEDPKVAALRELKEETGVSS 117
           ++ NV +  +I    K      +    +     P       E    A  RE+ EETG S 
Sbjct: 5   WKPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHS- 63

Query: 118 AEVLAEVPYWL---TYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKS 174
                          +         L+  + G          L      +  I       
Sbjct: 64  ----FLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKL------DTGI------- 106

Query: 175 EKPEFGEWKWMSPEQILERAVDFKKP 200
                    W S ++I  +    + P
Sbjct: 107 -----VRAAWFSIDEIRAKQAMHRTP 127

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 95  MPQNEDPKVAALRELKEETG 114
           + + E P+ AA REL+EE G
Sbjct: 77  VDEGETPEAAARRELREEVG 96

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 12/18 (66%), Positives = 14/18 (77%)

Query: 97  QNEDPKVAALRELKEETG 114
             E P+ AALREL+EETG
Sbjct: 103 DGETPEAAALRELEEETG 120

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 20/116 (17%)

Query: 89  IPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQ 143
           I +SW          +D    A++ELKEETGV +   L +  + L             H 
Sbjct: 67  IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNG------HI 120

Query: 144 WGGDWKGQAQK---WFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD 196
             G +          +L++ +  E  +     K +  E     W+   +I +   +
Sbjct: 121 KRGKYVSSHLHLNLTYLIECSEDETLM----LKED--ENSGVMWIPFNEISKYCSE 170

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 25/123 (20%)

Query: 73  CLINSSKKIFAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVLAEVPYW 127
            LI  + K+           +         NE  + A +RE+KEE GV  A+        
Sbjct: 24  ALIVQNHKLLVTKD---KGKYYTIGGAIQVNESTEDAVVREVKEELGV-KAQA---GQLA 76

Query: 128 LTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSP 187
              +   EV     H          +  +L+             +K +       +W+  
Sbjct: 77  FVVENRFEVDGVSYH--------NIEFHYLVDLLEDAPLTMQEDEKRQ-----PCEWIDL 123

Query: 188 EQI 190
           +++
Sbjct: 124 DKL 126

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 95  MPQNEDPKVAALRELKEETG 114
           +   E    AA RELKEE G
Sbjct: 84  IDPGESVYEAANRELKEEVG 103

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 25/128 (19%)

Query: 70  VGICLINSSKKIFAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVLAEV 124
           V  C++    ++    +      W  P       E       RE  EETG+ + +     
Sbjct: 6   VTNCIVVDHDQVLLLQKPR-RGWWVAPGGKMEAGESILETVKREYWEETGI-TVKNPELK 63

Query: 125 PYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKW 184
                +        K+  +           W L  F   E E    G+  ++   G+ +W
Sbjct: 64  G---IFSMVIFDEGKIVSE-----------WMLFTFKATEHE----GEMLKQSPEGKLEW 105

Query: 185 MSPEQILE 192
              +++LE
Sbjct: 106 KKKDEVLE 113

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 22/170 (12%), Positives = 41/170 (24%), Gaps = 44/170 (25%)

Query: 43  LPLVHHQNQICSSSYSMDAPPEG--YRRNVGICLINSSKKIF----AASRLDIPDSWQM- 95
           + L++ Q     +     A              L N+  ++     A S+   P  W   
Sbjct: 6   VILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNS 65

Query: 96  -----PQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKG 150
                   E  + A +R  + E GV      +  P    Y          +         
Sbjct: 66  VCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPD-FRY----------RATDPSGI-- 112

Query: 151 QAQKWFLLKFTGKEEEIN--LLGDKSEKP-----EFGEWKWMSPEQILER 193
                        E E+        +        E  +++W     +L  
Sbjct: 113 ------------VENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHG 150

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 47  HHQNQICSSSYSMDAPP--EGYRR-NVGI-CLINSSKKIFAASRLDIPDS--WQMP---- 96
           HH + + +       P   +   +  VG    I    +I    R   P++  W +P    
Sbjct: 4   HHHHHMGTLEAQTQGPGSMQHTEQPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKV 63

Query: 97  -QNEDPKVAALRELKEETGV 115
              E  + A  RE++EE G+
Sbjct: 64  DWLEPVERAVCREIEEELGI 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.94
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.88
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.85
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.83
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.83
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.83
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.8
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.76
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.76
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.75
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.75
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.75
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.75
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.75
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.74
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.74
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.73
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.73
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.73
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.73
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.72
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.72
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.72
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.72
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.72
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.72
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.71
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.71
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.7
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.7
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.7
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.7
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.7
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.69
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.69
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.69
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.68
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.68
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.68
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.66
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.65
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.65
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.64
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.64
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.64
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.64
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.63
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.63
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.63
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.63
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.63
3f13_A	163	Putative nudix hydrolase family member; structural	99.61
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.61
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.6
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.59
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.58
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.57
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.56
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.56
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.54
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.54
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.53
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.52
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.51
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.51
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.5
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.48
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.45
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.45
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.41
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.36
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.32
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.25
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.17
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.09
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.59
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.45

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.94  E-value=3.1e-26  Score=179.26  Aligned_cols=157  Identities=78%  Similarity=1.417  Sum_probs=123.3

Q ss_pred             cccCCCCCCccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEec
Q 028086           57 YSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYD  131 (214)
Q Consensus        57 ~~~~~~~~~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~  131 (214)
                      .+|..++..+|++|+++|++.+|+|||++|...+|.|.+|||     ||+++||+||++||||++...+......+..|.
T Consensus         4 ~~~~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   83 (165)
T 1f3y_A            4 GSMDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYD   83 (165)
T ss_dssp             CCCSSCCSSCCCEEEEEEECTTSCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCC
T ss_pred             ccccCCccceeeeEEEEEECCCCcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeee
Confidence            356677888999999999999999999999866699999999     999999999999999998655544433445566


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhcc
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTP  211 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~~  211 (214)
                      ++......+...+++.+.++..++|++.+.+...++.++++..+++|+.+++|++++++.+++.++++.+++++++.+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~l~~  163 (165)
T 1f3y_A           84 FPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAP  163 (165)
T ss_dssp             CCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHHHHGG
T ss_pred             cCccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence            66654333444555566677788999998765444444322234669999999999999999999999999999999998


Q ss_pred             cc
Q 028086          212 HL  213 (214)
Q Consensus       212 ~~  213 (214)
                      +|
T Consensus       164 ~~  165 (165)
T 1f3y_A          164 HL  165 (165)
T ss_dssp             GC
T ss_pred             cC
Confidence            76

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.88  E-value=5.4e-22  Score=157.29  Aligned_cols=144  Identities=38%  Similarity=0.694  Sum_probs=110.8

Q ss_pred             CCccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchh
Q 028086           64 EGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        64 ~~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~  136 (214)
                      ..+|++|+++|++.+|+|||++|.+ ++.|.+|||     ||+.+||+||++||||+..  ..+++....++.|.+|+..
T Consensus         5 ~~~~~~v~~~i~~~~~~vLl~~r~~-~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~   83 (164)
T 2kdv_A            5 DGYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRL   83 (164)
T ss_dssp             SSEEEEEEEEEECTTSEEEEEEETT-CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTT
T ss_pred             CCCCcEEEEEEEccCCEEEEEEEcC-CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCcce
Confidence            4688999999999899999999986 689999999     9999999999999999984  4556666666667776543


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhcccc
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL  213 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~~~~  213 (214)
                      ..   ....+.+.++..++|++.+.++...+.++.  .+.+|+.+++|++++++.+.+.++++.+|++++..+.+.|
T Consensus        84 ~~---~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~--~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l~~~l  155 (164)
T 2kdv_A           84 VR---WDTKPVCIGQKQKWFLLQLVSGDAEINMQT--SSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVV  155 (164)
T ss_dssp             CC---TTSSSCCCEEEEEEEEEEESSCGGGCCSCS--SSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             ee---eccCcccccceeEEEEEEecCCccccccCC--CCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            10   111223345677899998876544444431  1345899999999999998888888999999999887754

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.85  E-value=2.7e-21  Score=158.75  Aligned_cols=169  Identities=11%  Similarity=0.134  Sum_probs=82.3

Q ss_pred             HhhhhccCCCCCCCCCCCCCCCCCCCcccccccccc---------cccccccCCCCCCccceEEEEEEecCCcEEEEeec
Q 028086           17 LSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQNQI---------CSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRL   87 (214)
Q Consensus        17 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~vvI~~~~g~vLL~rR~   87 (214)
                      ...||+++|+|++|.+.+|++++|..+.-++..-..         ....++........+..|+++|++ +|+|||++|.
T Consensus        11 ~~~l~~~a~~gl~~~~~~~d~er~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~v~~vv~~-~~~vLLvrr~   89 (206)
T 3o8s_A           11 AVRLQALAQTGLAYGKDVYDMERFEEIRQIAAEMLVEPSGQPLEVVKDLFCNETGYQTPKLDTRAAIFQ-EDKILLVQEN   89 (206)
T ss_dssp             ---------------------------------------------------------CCEEEEEEEEEE-TTEEEEEECT
T ss_pred             HHHHHHHHHhhhccCCCchhHHHHHHHHHHHHHHHHhccCCCHHHHHHHhccccCCCCCCccEEEEEEE-CCEEEEEEec
Confidence            357999999999999999999999887776542111         112233333344456778888887 4899999998


Q ss_pred             CCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccccCCCccCceEEEEEEEE
Q 028086           88 DIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKF  160 (214)
Q Consensus        88 ~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~  160 (214)
                        +|.|.+|||     ||+.+||+||++||||++.  ..+++.... ..+.++..            ..+...++|.+..
T Consensus        90 --~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~-~~~~~~~~------------~~~~~~~~~~~~~  154 (206)
T 3o8s_A           90 --DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDK-HKNNPAKS------------AHRVTKVFILCRL  154 (206)
T ss_dssp             --TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEH-HHHCC-----------------CEEEEEEEEEE
T ss_pred             --CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEec-cccCCCCC------------CceEEEEEEEEEe
Confidence              589999999     9999999999999999984  233332210 00111111            1133456666666


Q ss_pred             eCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086          161 TGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF  209 (214)
Q Consensus       161 ~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~  209 (214)
                      .++  .+..      ..|+.+++|++++++.++.. +..+.+++.+++..
T Consensus       155 ~~~--~~~~------~~E~~~~~w~~~~el~~l~~~~~~~~~l~~~~~~~  196 (206)
T 3o8s_A          155 LGG--EFQP------NSETVASGFFSLDDLPPLYLGKNTAEQLALCLEAS  196 (206)
T ss_dssp             EEE--CCCC------CSSCSEEEEECTTSCCCBCTTTCCHHHHHHHHHHH
T ss_pred             cCC--eecC------CCCceEEEEEeHHHhhhccCCCchHHHHHHHHHHH
Confidence            533  2222      25889999999999998876 56677777776643

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.83  E-value=3.8e-20  Score=144.61  Aligned_cols=122  Identities=23%  Similarity=0.363  Sum_probs=82.8

Q ss_pred             ceEEEEEE---------ecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEec
Q 028086           68 RNVGICLI---------NSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYD  131 (214)
Q Consensus        68 ~~v~vvI~---------~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~  131 (214)
                      +++|++|+         |+++++||++|++.++.|.+|||     ||+.+||+||++||||+..  ...+........+.
T Consensus         4 ra~G~iifr~~~~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   83 (155)
T 3u53_A            4 RACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYV   83 (155)
T ss_dssp             CEEEEEEEEECCCSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEE
T ss_pred             eEeEEEEEccccccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeeecC
Confidence            46777877         44568999999887799999999     9999999999999999984  23333222222221


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF  209 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~  209 (214)
                        ..            .......+|++........+..      .+|+.+++|++++|+.+++. +..+.+++++.+.+
T Consensus        84 --~~------------~~~~~~~~~~~~~~~~~~~~~~------~~E~~~~~W~~~~ea~~~~~~~~~~~~L~~a~~~L  142 (155)
T 3u53_A           84 --AR------------NKPKTVIYWLAEVKDYDVEIRL------SHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFL  142 (155)
T ss_dssp             --ET------------TEEEEEEEEEEEESCTTCCCCC------CTTEEEEEEECHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred             --CC------------cceeEEEEEEEEEeccCCccCC------CcceeEEEEeEHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              11            1123445666666544333333      35899999999999988765 55566776665443

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.83  E-value=1.9e-20  Score=143.88  Aligned_cols=117  Identities=21%  Similarity=0.404  Sum_probs=81.6

Q ss_pred             ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhh
Q 028086           68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      .+++++|++ +|+|||++|.+  |.|.+|||     ||+.+||+||++||||++.  ...++.....  +....      
T Consensus         5 ~aag~vv~~-~~~vLL~~r~~--g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~--~~~~~------   73 (134)
T 3i7u_A            5 FSAGGVLFK-DGEVLLIKTPS--NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYW--YTLKG------   73 (134)
T ss_dssp             EEEEEEEEE-TTEEEEEECTT--SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEE--EEETT------
T ss_pred             EEEEEEEEE-CCEEEEEEeCC--CcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEE--ecCCC------
Confidence            456666665 68999999864  89999999     9999999999999999983  3334332211  11111      


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF  209 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~  209 (214)
                            .......++|++...++  ++.++      +|+.+++|++++++.+++. +..+.+++++++..
T Consensus        74 ------~~~~~~~~~f~~~~~~~--~~~~~------~E~~~~~W~~~~e~~~~l~~~~~r~il~~a~~l~  129 (134)
T 3i7u_A           74 ------ERIFKTVKYYLMKYKEG--EPRPS------WEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLK  129 (134)
T ss_dssp             ------EEEEEEEEEEEEEEEEE--CCCCC------TTSSEEEEEEHHHHHHHBCSHHHHHHHHHHHHHH
T ss_pred             ------ceEEEEEEEEEEEEcCC--cCcCC------hhheEEEEEEHHHHhhhcCChHHHHHHHHHHHHH
Confidence                  11233456778776543  23332      4899999999999998876 66678888777643

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.83  E-value=3e-22  Score=164.37  Aligned_cols=169  Identities=14%  Similarity=0.178  Sum_probs=114.8

Q ss_pred             HhhhhccCCCCCCCCCCCCCCCCCCCccccccc-----ccc----cccccccCCCCCCccceEEEEEEecCCcEEEEeec
Q 028086           17 LSSLLSRCKPNFTSPNYPHKLPKSTNLPLVHHQ-----NQI----CSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRL   87 (214)
Q Consensus        17 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~v~vvI~~~~g~vLL~rR~   87 (214)
                      ...||+++|+|++|.+.+|+.++|+.+..++..     ...    ....++........+.+|+++|++ +|+|||++|.
T Consensus         9 ~~~~~~~a~~g~~y~~~~~d~er~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~vv~~-~~~vLLv~r~   87 (205)
T 3q1p_A            9 VKQIQSIAQAGLTYSKDVYDIERFQQLRDISISMMSHYTKTDWEVVEKLFASETGYQTPKVDIRAVVFQ-NEKLLFVKEK   87 (205)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCSSCCCEEEEEEEEEE-TTEEEEEEC-
T ss_pred             HHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHHHhcccCCHHHHHHHHccccCCCCCcceEEEEEEE-CCEEEEEEEc
Confidence            457999999999999999999999877766431     111    112233344455567788888887 7899999987


Q ss_pred             CCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccccCCCccCceEEEEEEEE
Q 028086           88 DIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKF  160 (214)
Q Consensus        88 ~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~  160 (214)
                      . +|.|.+|||     ||+.+||+||++||||++.  ..+++.... ..+.++..            ..+...++|++..
T Consensus        88 ~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~-~~~~~~~~------------~~~~~~~~~~~~~  153 (205)
T 3q1p_A           88 S-DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDK-EKHQPSPS------------ATHVYKIFIGCEI  153 (205)
T ss_dssp             ---CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEH-HHHSCCCC------------SSCEEEEEEEEEE
T ss_pred             C-CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEec-cccCCCCC------------CceEEEEEEEEEe
Confidence            5 589999999     9999999999999999984  233322110 00111111            1233456677776


Q ss_pred             eCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086          161 TGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV  208 (214)
Q Consensus       161 ~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~  208 (214)
                      .++  .+..      ..|+.+++|++++++.++.. +..+..++.+++.
T Consensus       154 ~~~--~~~~------~~E~~~~~w~~~~el~~l~~~~~~~~~i~~~~~~  194 (205)
T 3q1p_A          154 IGG--EKKT------SIETEEVEFFGENELPNLSIARNTEDQIKEMFAY  194 (205)
T ss_dssp             EEE--CCCC------CTTSCCEEEECTTSCCCBCTTTCCHHHHHHHHHH
T ss_pred             cCC--ccCC------CCcceEEEEEeHHHhhhcCCCccHHHHHHHHHHH
Confidence            543  2222      25899999999999998876 6667777777664

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.80  E-value=3e-19  Score=135.83  Aligned_cols=123  Identities=20%  Similarity=0.349  Sum_probs=86.0

Q ss_pred             cceEEEEEEec---CCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchh
Q 028086           67 RRNVGICLINS---SKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        67 ~~~v~vvI~~~---~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~  136 (214)
                      +.+|+++|++.   +++|||++|...+|.|.+|||     |++.+||+||++||||+..  ..+++.....+.|.++.  
T Consensus         3 ~~~~~~vi~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~--   80 (138)
T 1ktg_A            3 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKG--   80 (138)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETT--
T ss_pred             eEEEEEEEEEecCCCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCC--
Confidence            56788888876   468999999765679999999     9999999999999999973  33332222223333221  


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT  210 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~  210 (214)
                                  .+...++|++...+.. . .     .+++|+.+++|++++++.++.. +..+.+++++.+.+.
T Consensus        81 ------------~~~~~~~f~~~~~~~~-~-~-----~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  136 (138)
T 1ktg_A           81 ------------KPKSVKYWLAKLNNPD-D-V-----QLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLA  136 (138)
T ss_dssp             ------------EEEEEEEEEEEECSCC-C-C-----CCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             ------------CceEEEEEEEEecCCc-c-c-----CCCchhcEeEeccHHHHHHhhccchHHHHHHHHHHHhh
Confidence                        1335567777775421 1 1     1345899999999999998765 455678887777654

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.76  E-value=5.8e-18  Score=131.42  Aligned_cols=119  Identities=21%  Similarity=0.345  Sum_probs=83.2

Q ss_pred             CCccceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecC
Q 028086           64 EGYRRNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDF  132 (214)
Q Consensus        64 ~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~  132 (214)
                      ..++.+|+++|++.+|+|||++|...    +|.|.+|||     |++.+||+||++||||+..  ..+++..    .+.+
T Consensus         5 ~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~----~~~~   80 (153)
T 3grn_A            5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQV----NFEL   80 (153)
T ss_dssp             SCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEE----EEEC
T ss_pred             CceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEE----EEec
Confidence            34577888899998999999999864    489999999     9999999999999999984  2333321    2222


Q ss_pred             CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC-c-cCCHHHHHHHHHh
Q 028086          133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA-V-DFKKPVYKEVFTV  208 (214)
Q Consensus       133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~-~-~~~~~~~~~~l~~  208 (214)
                      +.              .....++|.+....+  ++.+      .+|+.+++|++++++.++. . +..+.+++.+.+.
T Consensus        81 ~~--------------~~~~~~~~~~~~~~~--~~~~------~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~l~~~  136 (153)
T 3grn_A           81 TE--------------KKVIAIVFDGGYVVA--DVKL------SYEHIEYSWVSLEKILGMETLPAYFRDFFERFDRE  136 (153)
T ss_dssp             SS--------------CEEEEEEEEEEECCC--CCCC------CTTEEEEEEECHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred             CC--------------ceEEEEEEEEEecCC--cEec------CCCcceEEEEEHHHhhhcccchHHHHHHHHHHhcc
Confidence            21              122344555554432  2222      2488999999999999886 4 5566677666543

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.76  E-value=3.3e-18  Score=132.09  Aligned_cols=123  Identities=20%  Similarity=0.224  Sum_probs=82.1

Q ss_pred             ceEEEEEE---ecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCccee---eeeccce--EEecCCc
Q 028086           68 RNVGICLI---NSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEV---LAEVPYW--LTYDFPP  134 (214)
Q Consensus        68 ~~v~vvI~---~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~---l~~~~~~--~~~~~p~  134 (214)
                      .+|.++++   +++++|||++|.+ +|.|.+|||     |++.+||+||++||||++....   +......  +.|.++.
T Consensus         6 ~~v~vvi~~~~~~~~~vLl~~r~~-~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   84 (149)
T 3son_A            6 FQVLVIPFIKTEANYQFGVLHRTD-ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNK   84 (149)
T ss_dssp             CEEEEEEEEECSSSEEEEEEEESS-SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSS
T ss_pred             eEEEEEEEEecCCCeEEEEEEEcC-CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCC
Confidence            35556665   5667999999987 499999999     9999999999999999984221   1111000  0111111


Q ss_pred             hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086          135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT  210 (214)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~  210 (214)
                      .             .....++|++.......++.+      ++|+.+++|++++++.++.. +..+.+++.+.+.+.
T Consensus        85 ~-------------~~~~~~~f~~~~~~~~~~~~~------~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  142 (149)
T 3son_A           85 P-------------YVVPEYCFAIDLTSCSYQVTL------SLEHSELRWVSYESAIQLLEWDSNKTALYELNERLK  142 (149)
T ss_dssp             C-------------SEEEEEEEEEECTTTGGGCCC------CTTEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             c-------------eEeEEEEEEEEcCCCCCcccC------CCceeeEEEeCHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            1             123456677766532223333      24899999999999998876 667778888776654

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.75  E-value=8.4e-18  Score=128.91  Aligned_cols=128  Identities=18%  Similarity=0.331  Sum_probs=82.2

Q ss_pred             ceEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc----eeeeeccceEEecCCchhh
Q 028086           68 RNVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA----EVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        68 ~~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~----~~l~~~~~~~~~~~p~~~~  137 (214)
                      .+|+++|++.+ |+|||++|...+|.|.+|||     |++.+||+||++||||++..    .+++.. ....|.+-... 
T Consensus        10 ~~v~~~i~~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~-~~~~~~~~~~~-   87 (150)
T 2o1c_A           10 VSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQ-RTVEFEIFSHL-   87 (150)
T ss_dssp             EEEEEEEEETTTCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEE-EEEEEECCGGG-
T ss_pred             eEEEEEEEeCCCCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeee-ceeeeeeeccc-
Confidence            46788888875 89999999876799999999     99999999999999999842    233321 11122111100 


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV  208 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~  208 (214)
                         .....+.......++|.+....+. .+.       .+|+.+++|++++++.++.. +..+.+++++++.
T Consensus        88 ---~~~~~~~~~~~~~~~f~~~~~~~~-~~~-------~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  148 (150)
T 2o1c_A           88 ---RHRYAPGVTRNTESWFCLALPHER-QIV-------FTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVIN  148 (150)
T ss_dssp             ---GGGBCTTCCEEEEEEEEEEESSCC-CCC-------CSSSSCEEEEEHHHHHHHCSCHHHHHHHHHHTTC
T ss_pred             ---ccccCCCCcceEEEEEEEEcCCCC-CcC-------hhHhhccEeecHHHHHhhhcCHHHHHHHHHHHHh
Confidence               001111112345567777765321 111       24888999999999998765 4456666666544

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.75  E-value=8.8e-18  Score=128.57  Aligned_cols=116  Identities=18%  Similarity=0.193  Sum_probs=78.3

Q ss_pred             cceEEEEEEecCCcEEEEeecC-----CCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCc
Q 028086           67 RRNVGICLINSSKKIFAASRLD-----IPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPP  134 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~-----~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~  134 (214)
                      ...|+++|.+ +|+|||++|.+     .+|.|.+|||     |++.+||+||++||||+..  ...++.    +.+.++.
T Consensus         6 ~~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~----~~~~~~~   80 (140)
T 3gwy_A            6 IEVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLT----VHHTYPD   80 (140)
T ss_dssp             EEEEEEEEEE-TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE----EECCCSS
T ss_pred             EEEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEE----EEEEeCC
Confidence            4455666666 89999999875     3478999999     9999999999999999984  222322    2222221


Q ss_pred             hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086          135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT  210 (214)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~  210 (214)
                                    .....++|.+....+  .+.       ..|+.+++|++++++.++.. +..+.+++.+.+.-.
T Consensus        81 --------------~~~~~~~f~~~~~~~--~~~-------~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~~~  134 (140)
T 3gwy_A           81 --------------FEITMHAFLCHPVGQ--RYV-------LKEHIAAQWLSTREMAILDWAEADKPIVRKISEQEG  134 (140)
T ss_dssp             --------------CCEEEEEEEEEECCS--CCC-------CCSSCEEEEECHHHHTTSCBCGGGHHHHHHHHC---
T ss_pred             --------------ceEEEEEEEEEecCC--ccc-------ccccceeEeccHHHHhhCCCCcccHHHHHHHHhCcC
Confidence                          133456677766543  222       24888999999999998876 677888888765543

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.75  E-value=1.5e-17  Score=124.48  Aligned_cols=114  Identities=19%  Similarity=0.231  Sum_probs=81.2

Q ss_pred             ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhh
Q 028086           68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      .+|+++|++.+|+|||++|.+  |.|.+|||     |++.+||+||++||||+...  ..++.    +.+.++ +     
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~--g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~----~~~~~~-~-----   70 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYP----TRYVNP-K-----   70 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT--SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEE----EEEECT-T-----
T ss_pred             eEEEEEEEcCCCEEEEEEECC--CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeE----EEEecC-C-----
Confidence            467888899889999999976  89999999     99999999999999999842  22222    222221 1     


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF  209 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~  209 (214)
                              .....++|.+....+.  ..      ...|+.+++|++++++.++.. +..+.+++++++.+
T Consensus        71 --------~~~~~~~~~~~~~~~~--~~------~~~e~~~~~w~~~~el~~~~~~~~~~~~l~~~~~~l  124 (126)
T 1vcd_A           71 --------GVEREVHWFLMRGEGA--PR------LEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERL  124 (126)
T ss_dssp             --------SCEEEEEEEEEEEESC--CC------CCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHHS
T ss_pred             --------ceEEEEEEEEEEcCCC--CC------CCcceeeeEEcCHHHHHHhhcChhHHHHHHHHHHhc
Confidence                    1234566666654332  11      235888999999999998765 55567777776653

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.75  E-value=5.2e-18  Score=134.04  Aligned_cols=129  Identities=18%  Similarity=0.201  Sum_probs=81.6

Q ss_pred             CccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhh
Q 028086           65 GYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREK  139 (214)
Q Consensus        65 ~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~  139 (214)
                      .++..|+++|++ +|+|||++|...+|.|.+|||     |++.+||+||++||||++. ...... ..  +.++..    
T Consensus        21 ~~~~~v~~ii~~-~~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~-~~~~~~-~~--~~~~~~----   91 (171)
T 3id9_A           21 IMQVRVTGILIE-DEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEV-KIKKLL-YV--CDKPDA----   91 (171)
T ss_dssp             -CEEEEEEEEEE-TTEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCE-EEEEEE-EE--EEETTS----
T ss_pred             ceEEEEEEEEEE-CCEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCcc-ccceEE-EE--EcccCC----
Confidence            356777777776 689999999876799999999     9999999999999999984 211111 11  111111    


Q ss_pred             hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhccc
Q 028086          140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFTPH  212 (214)
Q Consensus       140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~~~  212 (214)
                              .......+|.+....+.  +.......+.+|+.+++|++++++.++.. +..+.++++.+....++
T Consensus        92 --------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~l~~~~~~~~~~  155 (171)
T 3id9_A           92 --------SPSLLHITFLLERIEGE--ITLPSNEFDHNPIHDVQMVPINELSYYGFSETFINLISGGLANAGSY  155 (171)
T ss_dssp             --------SSCEEEEEEEEEEC---------------CCCCCEEEEETGGGGGGTCCTTCSHHHHHGGGGTTCB
T ss_pred             --------CCcEEEEEEEEEEcCCc--ccCCccCCCcCeeeeEEEEeHHHHhhCCCCHHHHHHHHHhhccccce
Confidence                    01223445666554332  22211112346889999999999998866 66677787776655544

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.74  E-value=6.1e-18  Score=132.43  Aligned_cols=121  Identities=18%  Similarity=0.256  Sum_probs=81.5

Q ss_pred             CCCccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCC
Q 028086           63 PEGYRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFP  133 (214)
Q Consensus        63 ~~~~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p  133 (214)
                      +...+.+|+++|++ +|+|||++|.+.  +|.|.+|||     ||+.+||+||++||||++.  .++++..    .+.++
T Consensus        25 ~~~~~~~v~~vi~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~----~~~~~   99 (157)
T 4dyw_A           25 TEQPRVGCGAAIVR-DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVV----DHIDA   99 (157)
T ss_dssp             -CCCEEEEEEEEEE-TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEE----EEEET
T ss_pred             CCCceeEEEEEEEE-CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEE----Eeecc
Confidence            34457788888887 789999999864  489999999     9999999999999999983  3333322    11111


Q ss_pred             chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHH
Q 028086          134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVF  206 (214)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l  206 (214)
                      ...            .....++|.+....+  .+..    .+++|+.+++|++++++.+.+.+..+.+++.+.
T Consensus       100 ~~~------------~~~~~~~f~~~~~~~--~~~~----~~~~E~~~~~W~~~~el~~~l~~~~~~~l~~l~  154 (157)
T 4dyw_A          100 ANG------------EHWVAPVYLAHAFSG--EPRV----VEPDRHEALGWFALDDLPQPLTHATRIALEQVT  154 (157)
T ss_dssp             TTT------------EEEEEEEEEESEEES--CCCC----SCTTTEEEEEEEETTSCCSSBCHHHHHHHHHHC
T ss_pred             CCC------------cEEEEEEEEEEEcCC--Cccc----CCCCcEeEEEEECHHHcccccCHHHHHHHHHHH
Confidence            110            122344555554322  2221    134689999999999999866676677776653

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.73  E-value=3.8e-17  Score=124.91  Aligned_cols=121  Identities=17%  Similarity=0.234  Sum_probs=81.4

Q ss_pred             ccceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeeccceEEecCCch
Q 028086           66 YRRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYDFPPE  135 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~~p~~  135 (214)
                      .+..++++|++.+|+|||++|.+.   +|.|.+|||     |++.+||+||++||||+....  +...  ..+.+.++. 
T Consensus         7 ~~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~--~~~~~~~~~-   83 (144)
T 3r03_A            7 ILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPL--AFASHSYDT-   83 (144)
T ss_dssp             EEEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEE--EEEEEECSS-
T ss_pred             eeEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEE--EeeeccCCC-
Confidence            355667777888899999999754   389999999     999999999999999998422  1221  112222211 


Q ss_pred             hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhcc
Q 028086          136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFTP  211 (214)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~~  211 (214)
                                   .....++|.+....+  .+.       ..|+.+++|++++++.++.. +..+.+++.+.+...|
T Consensus        84 -------------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~  138 (144)
T 3r03_A           84 -------------FHLLMPLYACRSWRG--RAT-------AREGQTLAWVRAERLREYPMPPADLPLIPILQDWLEG  138 (144)
T ss_dssp             -------------SEEEEEEEEECCCBS--CCC-------CCSSCEEEEECGGGGGGSCCCTTTTTHHHHHHHHC--
T ss_pred             -------------eEEEEEEEEEEecCC--ccC-------CCCcceEEEEeHHHhccCCCCcchHHHHHHHhCcccc
Confidence                         122334455443322  222       24788999999999999877 5667788887766544

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.73  E-value=1.8e-17  Score=134.62  Aligned_cols=132  Identities=19%  Similarity=0.297  Sum_probs=81.9

Q ss_pred             CccceEEEEEEecCC-cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEe-cCCchhh
Q 028086           65 GYRRNVGICLINSSK-KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTY-DFPPEVR  137 (214)
Q Consensus        65 ~~~~~v~vvI~~~~g-~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~-~~p~~~~  137 (214)
                      .++.+++++|++.+| +|||++|.. +|.|.+|||     ||+.+||+||++||||++...++......+.+ ..+... 
T Consensus        43 ~~h~~~~~vv~~~~~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~-  120 (197)
T 3fcm_A           43 IAHLTSSAFAVNKERNKFLMIHHNI-YNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHI-  120 (197)
T ss_dssp             SEEEEEEEEEECTTSCEEEEEEETT-TTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEE-
T ss_pred             CccEEEEEEEEECCCCEEEEEEecC-CCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCcc-
Confidence            456788888888776 999999875 589999999     99999999999999999843332211111111 111110 


Q ss_pred             hhhccccCCCccC---ceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086          138 EKLKHQWGGDWKG---QAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT  210 (214)
Q Consensus       138 ~~l~~~~~~~~~~---~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~  210 (214)
                            ..+.+..   ....+|++....+ ..+.+     +++|+.+++|++++++.++.. +..+.+++++++.+.
T Consensus       121 ------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l~  185 (197)
T 3fcm_A          121 ------KRGKYVSSHLHLNLTYLIECSED-ETLML-----KEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINKLK  185 (197)
T ss_dssp             ------ETTEEECCEEEEEEEEEEECCTT-SCCCC-----CC----CEEEEEGGGHHHHCCCGGGHHHHHHHHHHHH
T ss_pred             ------ccCcccCCceeEEEEEEEEeCCC-cccCC-----CcccccceEEccHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence                  0000001   1123445544322 12222     346899999999999999877 666778888887664

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.73  E-value=8.9e-18  Score=130.61  Aligned_cols=118  Identities=16%  Similarity=0.140  Sum_probs=80.4

Q ss_pred             ccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchh
Q 028086           66 YRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~  136 (214)
                      ....|+++|++.+|+|||++|.+.  +|.|.+|||     ||+.+||+||++||||++.  .++++.      +...   
T Consensus        19 ~~~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~------~~~~---   89 (156)
T 3gg6_A           19 VCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSV------EERG---   89 (156)
T ss_dssp             CEEEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEE------EESS---
T ss_pred             eEEEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEE------EcCC---
Confidence            345677778888999999999864  489999999     9999999999999999984  222221      1111   


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC-CHHHHHHHHHh
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF-KKPVYKEVFTV  208 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~-~~~~~~~~l~~  208 (214)
                                  .+...++|++....+......    .+++|+.+++|++++++.+++.+. .+.++..+...
T Consensus        90 ------------~~~~~~~f~~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  146 (156)
T 3gg6_A           90 ------------PSWVRFVFLARPTGGILKTSK----EADAESLQAAWYPRTSLPTPLRAHDILHLVELAAQY  146 (156)
T ss_dssp             ------------TTEEEEEEEEEEEEECCCCGG----GCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHHHHH
T ss_pred             ------------CCEEEEEEEEEeeCCeeccCC----CCCcceeeeEEEcHHHCcccccchhHHHHHHHHHHH
Confidence                        123456677766533222111    134688999999999998877643 34555555443

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.73  E-value=5e-17  Score=124.05  Aligned_cols=118  Identities=19%  Similarity=0.190  Sum_probs=80.8

Q ss_pred             CCccceEEEEEEe--cCCc--EEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC
Q 028086           64 EGYRRNVGICLIN--SSKK--IFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF  132 (214)
Q Consensus        64 ~~~~~~v~vvI~~--~~g~--vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~  132 (214)
                      ...+.+|+++|++  ++|+  |||++|.+.++.|.+|||     ||+.+||+||++||||+...  .+++      .+.+
T Consensus         6 ~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~------~~~~   79 (139)
T 2yyh_A            6 KTPLLATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMG------VYSD   79 (139)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEE------EECC
T ss_pred             cCCeEEEEEEEEEEcCCCcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEE------EECC
Confidence            4457788888876  6788  999999876667999999     99999999999999999842  2222      1222


Q ss_pred             CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh--hcCccCCHHHHHHHHH
Q 028086          133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL--ERAVDFKKPVYKEVFT  207 (214)
Q Consensus       133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~--~~~~~~~~~~~~~~l~  207 (214)
                      +...          ...+...++|++...+   ++.      ..+|+.+++|++++++.  .+..+ .+++++.+++
T Consensus        80 ~~~~----------~~~~~~~~~f~~~~~~---~~~------~~~e~~~~~W~~~~el~~~~l~~~-~~~~l~~~l~  136 (139)
T 2yyh_A           80 PERD----------PRAHVVSVVWIGDAQG---EPK------AGSDAKKVKVYRLEEIPLDKLVFD-HKKIILDFLK  136 (139)
T ss_dssp             TTSC----------TTSCEEEEEEEEEEES---CCC------CCTTEEEEEEECTTSCCGGGBCTT-HHHHHHHHHH
T ss_pred             CCcC----------CCceEEEEEEEEecCC---ccC------CCCCcceEEEEEHHHCCHhhcCCC-HHHHHHHHHh
Confidence            2110          0113345667777632   222      23588999999999998  55545 4556666654

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.72  E-value=2.4e-17  Score=128.21  Aligned_cols=124  Identities=14%  Similarity=0.215  Sum_probs=80.5

Q ss_pred             ccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc----ceeeeeccceEEecCCc
Q 028086           66 YRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS----AEVLAEVPYWLTYDFPP  134 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~----~~~l~~~~~~~~~~~p~  134 (214)
                      .+.+|+++|++.+|+|||++|.+.  +|.|.+|||     |++.+||+||++||||+..    ...++...    +.++.
T Consensus        17 ~~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~----~~~~~   92 (160)
T 1rya_A           17 PLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQ----HFYDD   92 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEE----EEESS
T ss_pred             cEEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEe----EEEcc
Confidence            356888889988899999999764  489999999     9999999999999999983    23333321    22211


Q ss_pred             hhhhhhccccCCCc-cCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC--ccCCHHHHHHHHH
Q 028086          135 EVREKLKHQWGGDW-KGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA--VDFKKPVYKEVFT  207 (214)
Q Consensus       135 ~~~~~l~~~~~~~~-~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~--~~~~~~~~~~~l~  207 (214)
                      ..       .+... .+...++|.+....+  ++..     +.+|+.+++|++++++.++.  .++.+.+++....
T Consensus        93 ~~-------~~~~~~~~~~~~~f~~~~~~~--~~~~-----~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~~~~  154 (160)
T 1rya_A           93 NF-------SGTDFTTHYVVLGFRFRVSEE--ELLL-----PDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKR  154 (160)
T ss_dssp             BT-------TBSSSCEEEEEEEEEEECCGG--GCCC-----CSSSEEEEEEECHHHHHHCTTBCHHHHGGGCHHHH
T ss_pred             cc-------cCCCcCcEEEEEEEEEEcCcc--cccc-----CCCccceEEEecHHHHhhccccCHHHHHHHHHHhh
Confidence            10       00000 122345555554322  2222     24588999999999998753  3555666655543

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.72  E-value=4.6e-17  Score=127.83  Aligned_cols=123  Identities=15%  Similarity=0.243  Sum_probs=74.0

Q ss_pred             CccceEEEEEEecCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeec--cceEEec
Q 028086           65 GYRRNVGICLINSSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEV--PYWLTYD  131 (214)
Q Consensus        65 ~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~--~~~~~~~  131 (214)
                      ..++.++++|++.+|+|||++|...    +|.|.+|||     |++.+||+||++||||++.  ..++...  .....+.
T Consensus        25 ~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  104 (165)
T 3oga_A           25 MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKT  104 (165)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEE
T ss_pred             cceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEe
Confidence            3355566667778899999998753    389999999     9999999999999999984  2222211  1111233


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHH
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKE  204 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~  204 (214)
                      |+...           ......+++++........+..      .+|+.+++|++++++.++.. +..+.+++.
T Consensus       105 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~------~~E~~~~~W~~~~el~~~~~~~~~~~~l~~  161 (165)
T 3oga_A          105 YADGR-----------QEEIYMIYLIFDCVSANRDICI------NDEFQDYAWVKPEELALYDLNVATRHTLAL  161 (165)
T ss_dssp             C--CC-----------EEEEEEEEEEEEEEESCCCCCC------CTTEEEEEEECGGGGGGSCBCHHHHHHHHH
T ss_pred             cCCCC-----------ceeEEEEEEEEEeeccCCCccC------CchheeeEEccHHHHhhCCCCHHHHHHHHH
Confidence            43321           0111122222222211112222      25889999999999998755 455555543

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.72  E-value=6.6e-17  Score=125.56  Aligned_cols=109  Identities=23%  Similarity=0.292  Sum_probs=77.1

Q ss_pred             CccceEEEEEEecCCcEEEEeecC------CCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEec
Q 028086           65 GYRRNVGICLINSSKKIFAASRLD------IPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYD  131 (214)
Q Consensus        65 ~~~~~v~vvI~~~~g~vLL~rR~~------~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~  131 (214)
                      .++++++++|++.+|+|||++|.+      .+|.|.+|||     |++.+||+||++||||+...  .+++.    +.+.
T Consensus        11 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~----~~~~   86 (159)
T 1sjy_A           11 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGA----YLGR   86 (159)
T ss_dssp             CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEE----EEEE
T ss_pred             eEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEE----Eecc
Confidence            446778888888889999999985      3589999999     99999999999999999842  23322    1222


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      ++.+             .....++|.+....+. .+...    +.+|+.++.|++++++.++..
T Consensus        87 ~~~~-------------~~~~~~~f~~~~~~~~-~~~~~----~~~E~~~~~W~~~~el~~~~~  132 (159)
T 1sjy_A           87 FPDG-------------VLILRHVWLAEPEPGQ-TLAPA----FTDEIAEASFVSREDFAQLYA  132 (159)
T ss_dssp             CTTS-------------CEEEEEEEEEEECSSC-CCCCC----CCSSEEEEEEECHHHHHHHHH
T ss_pred             cCCC-------------ceEEEEEEEEEccCCC-ccccC----CCCceeEEEEecHHHHHHhhh
Confidence            2221             1234566777665332 12220    245899999999999988765

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.72  E-value=2.1e-17  Score=126.98  Aligned_cols=107  Identities=21%  Similarity=0.403  Sum_probs=71.0

Q ss_pred             ceEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhc
Q 028086           68 RNVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLK  141 (214)
Q Consensus        68 ~~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~  141 (214)
                      +.++++|++.+ |+|||++|.. +|.|.+|||     ||+.+||+||++||||+....+... ...+....         
T Consensus         5 ~~~~~~i~~~~~~~vLl~~r~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~-~~~~~~~~---------   73 (146)
T 2jvb_A            5 PVRGAAIFNENLSKILLVQGTE-SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDD-NQFIERNI---------   73 (146)
T ss_dssp             CCEEEEEBCTTSSEEEEECCSS-SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCS-SCEEEEEE---------
T ss_pred             EEEEEEEEeCCCCEEEEEEEcC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhccc-cccccccc---------
Confidence            45677788775 8999999876 589999999     9999999999999999985432221 11111110         


Q ss_pred             cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                             .+...++|++...........    ...+|+.+++|++++++.+++.+
T Consensus        74 -------~~~~~~~~~~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~~~  117 (146)
T 2jvb_A           74 -------QGKNYKIFLISGVSEVFNFKP----QVRNEIDKIEWFDFKKISKTMYK  117 (146)
T ss_dssp             -------TTEEEEEEEECCCCSSSCCCC----CCSSSCCCEEEEEHHHHHTGGGC
T ss_pred             -------CCceEEEEEEEeccccccCCc----CCcchhheeEEeEHHHHHhhhcc
Confidence                   122334444443222111111    13468899999999999987763

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.72  E-value=5.4e-17  Score=125.63  Aligned_cols=112  Identities=20%  Similarity=0.285  Sum_probs=72.3

Q ss_pred             EEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhcccc
Q 028086           73 CLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQW  144 (214)
Q Consensus        73 vI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~  144 (214)
                      +|++.+|+|||++|... +|.|.+|||     ||+.+||+||++||||++.  ..+++.    +.+.++..         
T Consensus        10 ~ii~~~~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~----~~~~~~~~---------   76 (153)
T 3shd_A           10 CVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRM----HQWIAPDK---------   76 (153)
T ss_dssp             EEEEETTEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEE----EEECCTTS---------
T ss_pred             EEEEeCCEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEE----EEEecCCC---------
Confidence            44566899999998632 478999999     9999999999999999984  233322    22333321         


Q ss_pred             CCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh---hcCccCCHHHHHHHHH
Q 028086          145 GGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL---ERAVDFKKPVYKEVFT  207 (214)
Q Consensus       145 ~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~---~~~~~~~~~~~~~~l~  207 (214)
                          .....++|++...... ....     ++.|+.+++|++++++.   ....+..+..++..+.
T Consensus        77 ----~~~~~~~f~~~~~~~~-~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~~  132 (153)
T 3shd_A           77 ----TPFLRFLFAIELEQIC-PTQP-----HDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQS  132 (153)
T ss_dssp             ----CCEEEEEEEEECSSCC-CCCC-----CSTTCCEEEEECHHHHHTCSCBSSTHHHHHHHHHHH
T ss_pred             ----ceEEEEEEEEEccccC-cCCC-----CcccceeeEEecHHHhhccccccCchHHHHHHHHHh
Confidence                2334566777665321 1222     34689999999999993   2223444444544443

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.72  E-value=2.7e-17  Score=132.59  Aligned_cols=110  Identities=15%  Similarity=0.271  Sum_probs=74.1

Q ss_pred             CCccceEEEEEEecCCcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCcce---eeeeccceEEe
Q 028086           64 EGYRRNVGICLINSSKKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSSAE---VLAEVPYWLTY  130 (214)
Q Consensus        64 ~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~~~---~l~~~~~~~~~  130 (214)
                      ..++++|+++|++.+|+|||++|...    +|.|.+ |||     ||+++||+||++||||+....   .++..  .+..
T Consensus        29 ~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~--~~~~  106 (190)
T 1hzt_A           29 TRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDF--RYRA  106 (190)
T ss_dssp             --CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTC--EEEE
T ss_pred             CceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeE--EEEe
Confidence            34567889999998999999999653    589999 888     999999999999999998432   22211  1111


Q ss_pred             cCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          131 DFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       131 ~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                      .++.+.           ......++|++...+   ++.+     +++|+.+++|++++++.+++
T Consensus       107 ~~~~~~-----------~~~~~~~~f~~~~~~---~~~~-----~~~E~~~~~W~~~~el~~~~  151 (190)
T 1hzt_A          107 TDPSGI-----------VENEVCPVFAARTTS---ALQI-----NDDEVMDYQWCDLADVLHGI  151 (190)
T ss_dssp             ECTTSC-----------EEEEECCEEEEEBCS---CCCC-----CTTTEEEEEEECHHHHHHHH
T ss_pred             eCCCCC-----------cceEEEEEEEEecCC---CCcC-----CccceeeEEEecHHHHHHHH
Confidence            222211           012233556666432   2222     24589999999999998774

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.71  E-value=4.9e-17  Score=132.30  Aligned_cols=121  Identities=21%  Similarity=0.323  Sum_probs=75.9

Q ss_pred             CccceEEEEEEec-CCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCch
Q 028086           65 GYRRNVGICLINS-SKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPE  135 (214)
Q Consensus        65 ~~~~~v~vvI~~~-~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~  135 (214)
                      ..+.+|+++|++. +++|||++|... +|.|.+|||     ||+.+||+||++||||++..  .+++.   ...+.++..
T Consensus        24 ~~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~---~~~~~~~~~  100 (199)
T 3h95_A           24 SHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSI---RQQHTNPGA  100 (199)
T ss_dssp             --CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE---EECC-----
T ss_pred             cccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEE---EeeecCCCC
Confidence            4456777777775 489999998653 489999999     99999999999999999842  22221   111222221


Q ss_pred             hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc--cCCHHHHHHHH
Q 028086          136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV--DFKKPVYKEVF  206 (214)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~--~~~~~~~~~~l  206 (214)
                                   ......+|++........+.+     +++|+.+++|++++++.++..  +..+.+.+.++
T Consensus       101 -------------~~~~~~~~~~~~~~~~~~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~  155 (199)
T 3h95_A          101 -------------FGKSDMYIICRLKPYSFTINF-----CQEECLRCEWMDLNDLAKTENTTPITSRVARLLL  155 (199)
T ss_dssp             -----------------CEEEEEEEEESCCCCCC-----CTTTEEEEEEEEHHHHHHCSSBCHHHHHHHHHHH
T ss_pred             -------------ceeEEEEEEEEEcCCCcccCC-----CccceeeeEEEeHHHHhhhhhcChHHHHHHHHHH
Confidence                         122345566666533323332     356899999999999998654  34444444443

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.71  E-value=8.8e-17  Score=125.34  Aligned_cols=118  Identities=17%  Similarity=0.308  Sum_probs=79.3

Q ss_pred             cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~  136 (214)
                      ...++++|++.+|+|||++|.+.   +|.|.+|||     |++.+||+||++||||+...  .+...  ..+.+.++.  
T Consensus        29 ~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~--~~~~~~~~~--  104 (158)
T 3hhj_A           29 LIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPL--TFASHGYET--  104 (158)
T ss_dssp             EEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEE--EEEEEECSS--
T ss_pred             EEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEE--EEEeeccCC--
Confidence            45566777788899999999754   389999999     99999999999999999842  22111  112222211  


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF  209 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~  209 (214)
                                  .....++|.+....+  .+       ...|..+++|++++++.++.. +..+.+++.+.+.+
T Consensus       105 ------------~~~~~~~~~~~~~~~--~~-------~~~e~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l  157 (158)
T 3hhj_A          105 ------------FHLLMPLYFCSHYKG--VA-------QGREGQNLKWIFINDLDKYPMPEADKPLVQVLKNFF  157 (158)
T ss_dssp             ------------CEEEEEEEEESCCBS--CC-------CCTTSCEEEEEEGGGGGGSCCCTTTHHHHHHHHHC-
T ss_pred             ------------cEEEEEEEEEEECCC--cc-------CCccccceEEEcHHHHhhCCCCcchHHHHHHHHHhc
Confidence                        122334444443321  22       234788999999999998776 56788888877653

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.70  E-value=7.9e-17  Score=125.90  Aligned_cols=129  Identities=16%  Similarity=0.089  Sum_probs=77.1

Q ss_pred             ccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeecc-ce------EEec
Q 028086           66 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVP-YW------LTYD  131 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~-~~------~~~~  131 (214)
                      .+.+|+++|++ +|+|||++|.+ +|.|.+|||     ||+.+||+||++||||++.  ...++... ..      ..+.
T Consensus         5 ~~~~v~~vi~~-~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   82 (159)
T 3f6a_A            5 RHFTVSVFIVC-KDKVLLHLHKK-AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLI   82 (159)
T ss_dssp             SCEEEEEEEEE-TTEEEEEECSS-SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEEC
T ss_pred             ceEEEEEEEEE-CCEEEEEEcCC-CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccccccccccccccccccccc
Confidence            35667777777 78999999986 589999999     9999999999999999984  22222110 00      0011


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC-ccCC-HHHHHHHHH
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA-VDFK-KPVYKEVFT  207 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~-~~~~-~~~~~~~l~  207 (214)
                      .|....   ..... .......++|++....+  .+..     +++|+.+++|++++++.++. .+.. +.+.++..+
T Consensus        83 ~p~~~~---~~~~~-~~~~~~~~~f~~~~~~~--~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  149 (159)
T 3f6a_A           83 NPIHTI---LGDVS-PNHSHIDFVYYATTTSF--ETSP-----EIGESKILKWYSKEDLKNAHNIQENILVMATEALD  149 (159)
T ss_dssp             CCSEEE---EECSS-SSSCEEEEEEEEECSCS--CCCC-----CTTSCCCEEEECSSSSTTCSSSCHHHHHHHHHHHH
T ss_pred             Cccccc---cccCC-CCceEEEEEEEEEeCCC--CcCC-----CCCcccceEEeeHHHHhhCcCCChhHHHHHHHHHH
Confidence            110000   00000 00112334566665433  2222     24588999999999999887 3433 344455444

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.70  E-value=4.4e-17  Score=124.92  Aligned_cols=121  Identities=14%  Similarity=0.152  Sum_probs=78.9

Q ss_pred             ccceEEEEEEec-CCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086           66 YRRNVGICLINS-SKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        66 ~~~~v~vvI~~~-~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~  137 (214)
                      .+.+|+++|+++ +|+|||++|.  +|.|.+|||     |++.+||+||++||||+..  ...++....   +.++... 
T Consensus        17 ~~~~~~~vi~~~~~~~vLl~~r~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~---~~~~~~~-   90 (148)
T 2azw_A           17 TRYAAYIIVSKPENNTMVLVQAP--NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADE---YFYSNHR-   90 (148)
T ss_dssp             ECCEEEEECEEGGGTEEEEEECT--TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEE---EEEETTT-
T ss_pred             eeeEEEEEEECCCCCeEEEEEcC--CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEE---EEcCCCC-
Confidence            356777788876 6899999984  489999999     9999999999999999984  233332211   1111110 


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV  208 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~  208 (214)
                              ........++|.+....+  ...      ..+|+.+++|++++++.++.. +..+.+++++++.
T Consensus        91 --------~~~~~~~~~~~~~~~~~~--~~~------~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  146 (148)
T 2azw_A           91 --------QTAYYNPGYFYVANTWRQ--LSE------PLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWLAA  146 (148)
T ss_dssp             --------TEEEEEEEEEEEEEEEEE--CSS------CC-CCSEEEEECHHHHHHHBSCHHHHHHHHHHHHC
T ss_pred             --------CcceEEEEEEEEEEcCcC--CcC------CCCceeeEEEeeHHHHHhhhcchhHHHHHHHHHHh
Confidence                    001122345566655432  111      124778999999999998766 4556777777643

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.70  E-value=1.4e-16  Score=128.55  Aligned_cols=117  Identities=19%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             ccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhh
Q 028086           66 YRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~  138 (214)
                      .+.+|+++|++ +|+|||++|.+.  +|.|.+|||     ||+++||+||++||||+... ..... .  .+.++.    
T Consensus        39 ~~~~v~~ii~~-~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~-~--~~~~~~----  109 (189)
T 3cng_A           39 PKVIVGCIPEW-ENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVE-IRELY-A--VYSLPH----  109 (189)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEE-EEEEE-E--EEEEGG----
T ss_pred             CceEEEEEEEe-CCEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccc-cceeE-E--EEecCC----
Confidence            36677777776 789999999764  489999999     99999999999999999842 11111 1  122221    


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHh--hcCccCCHHHHHHHHHhh
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQIL--ERAVDFKKPVYKEVFTVF  209 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~--~~~~~~~~~~~~~~l~~~  209 (214)
                                .....++|++....+  ++..      .+|+.+++|++++++.  .+..+..+.++++++...
T Consensus       110 ----------~~~~~~~f~~~~~~~--~~~~------~~E~~~~~W~~~~el~~~~l~~~~~~~~l~~~l~~~  164 (189)
T 3cng_A          110 ----------ISQVYMLFRAKLLDL--DFFP------GIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYMEER  164 (189)
T ss_dssp             ----------GTEEEEEEEEEECCS--CCCC------CTTEEEEEEECTTTCCGGGBSCHHHHHHHHHHHHHH
T ss_pred             ----------CcEEEEEEEEEeCCC--ccCC------CccceeEEEECHHHcCcccccChHHHHHHHHHHHhc
Confidence                      133556777776533  2221      3588999999999998  455566566666666543

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.70  E-value=7.2e-17  Score=126.78  Aligned_cols=118  Identities=11%  Similarity=0.156  Sum_probs=77.0

Q ss_pred             CccceEEEEEEecC-CcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCc
Q 028086           65 GYRRNVGICLINSS-KKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPP  134 (214)
Q Consensus        65 ~~~~~v~vvI~~~~-g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~  134 (214)
                      ..+.+|.++|++++ |+|||++|.+.+  |.|++|||     |++.+||+||++||||+..  .++++.    +.+.++.
T Consensus         8 ~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~----~~~~~~~   83 (161)
T 3exq_A            8 PVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGT----CEWFDDD   83 (161)
T ss_dssp             CEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEE----EEEECSS
T ss_pred             CceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEE----EecccCC
Confidence            34667777777776 799999988643  68999999     9999999999999999983  333332    1222211


Q ss_pred             hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHH
Q 028086          135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFT  207 (214)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~  207 (214)
                      ..            .....++|.+....+  .+.       ..|..+++|++++++.++.. +..+.+++.+++
T Consensus        84 ~~------------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  136 (161)
T 3exq_A           84 RQ------------HRKLGLLYRASNFTG--TLK-------ASAEGQLSWLPITALTRENSAASLPEFLQVFTG  136 (161)
T ss_dssp             CS------------SEEEEEEEEECCEES--CCC-------GGGTTTEEEECGGGCCTTTBCTTHHHHHHHHTT
T ss_pred             CC------------eEEEEEEEEEeccCC--ccC-------CCccceEEEeeHHHhhhCccChHHHHHHHHHhh
Confidence            10            111223333332221  222       23677899999999998766 445667776655

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.70  E-value=5e-16  Score=123.51  Aligned_cols=118  Identities=19%  Similarity=0.197  Sum_probs=78.9

Q ss_pred             CccceEEEEEEecCCcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC
Q 028086           65 GYRRNVGICLINSSKKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF  132 (214)
Q Consensus        65 ~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~  132 (214)
                      .++++++++|++.+|+|||++|...    +|.|.+ |||     |++.+||+||++||||+...  ..++.    +.+.+
T Consensus        35 ~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~----~~~~~  110 (180)
T 2fkb_A           35 LRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQ----FYFED  110 (180)
T ss_dssp             CCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEE----EEEEE
T ss_pred             ceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEE----EEecC
Confidence            3456788888898999999998754    578999 999     99999999999999999742  22222    12211


Q ss_pred             CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc---cCCHHHHHHHHHh
Q 028086          133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV---DFKKPVYKEVFTV  208 (214)
Q Consensus       133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~---~~~~~~~~~~l~~  208 (214)
                      +.              .....++|++...+   .+.+     +..|+.+++|++++++.+++.   +..+.++..++..
T Consensus       111 ~~--------------~~~~~~~f~~~~~~---~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~~~  167 (180)
T 2fkb_A          111 KN--------------CRVWGALFSCVSHG---PFAL-----QEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKR  167 (180)
T ss_dssp             TT--------------EEEEEEEEEEECCC---CCCC-----CTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHHHHH
T ss_pred             CC--------------ceEEEEEEEEecCC---CcCC-----ChhHhheEEEecHHHHHHHHHHhCCcHHHHHHHHHHh
Confidence            10              12234556655221   2222     345899999999999998743   3334455555443

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.69  E-value=6.7e-17  Score=126.20  Aligned_cols=114  Identities=18%  Similarity=0.209  Sum_probs=74.1

Q ss_pred             ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEE-----------
Q 028086           68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLT-----------  129 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~-----------  129 (214)
                      .+|+++|++ +|+|||++|.+ +|.|.+|||     ||+.+||+||++||||++.  ...++....+..           
T Consensus         2 ~~~~~vi~~-~~~vLL~~r~~-~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (156)
T 1k2e_A            2 IVTSGVLVE-NGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILE   79 (156)
T ss_dssp             EEEEEECEE-TTEEEEEECTT-TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEE
T ss_pred             eEEEEEEEE-CCEEEEEEEcC-CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccceeee
Confidence            456777777 88999999876 589999999     9999999999999999983  122211111000           


Q ss_pred             --ecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHH
Q 028086          130 --YDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVF  206 (214)
Q Consensus       130 --~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l  206 (214)
                        ..+++.            .......+|++...+              .|+.+++|++++++.++.. +..+.+++.++
T Consensus        80 ~~~~~~~~------------~~~~~~~~f~~~~~~--------------~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  133 (156)
T 1k2e_A           80 EVVKYPEE------------THIHFDLIYLVKRVG--------------GDLKNGEWIDVREIDRIETFPNVRKVVSLAL  133 (156)
T ss_dssp             EEEECSSC------------EEEEEEEEEEEEEEE--------------ECCCSCEEEEGGGGGGSCBSTTHHHHHHHHH
T ss_pred             eeecCCCC------------ceEEEEEEEEEEecC--------------CcEeeeEEeCHHHHhcCCCChHHHHHHHHHH
Confidence              011110            001122234443221              2677899999999998765 66677887776


Q ss_pred             Hhh
Q 028086          207 TVF  209 (214)
Q Consensus       207 ~~~  209 (214)
                      +.+
T Consensus       134 ~~l  136 (156)
T 1k2e_A          134 STL  136 (156)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.69  E-value=1.4e-16  Score=121.04  Aligned_cols=114  Identities=21%  Similarity=0.315  Sum_probs=76.3

Q ss_pred             ceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086           68 RNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~  137 (214)
                      +.++++|++.+|+|||++|.+.   +|.|++|||     |++.+||+||++||||+..  ...++.    +.+.++.   
T Consensus         9 ~~~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~----~~~~~~~---   81 (140)
T 2rrk_A            9 IEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVAS----HQREVSG---   81 (140)
T ss_dssp             EEEEEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEE----EEEEETT---
T ss_pred             ceEEEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEE----EEEecCC---
Confidence            3444455578899999998654   489999999     9999999999999999984  223322    2222211   


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV  208 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~  208 (214)
                                 .....++|.+....+  .+.       ..|+.+++|++++++.++.. +..+.+++.+++.
T Consensus        82 -----------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  133 (140)
T 2rrk_A           82 -----------RIIHLHAWHVPDFHG--TLQ-------AHEHQALVWCSPEEALQYPLAPADIPLLEAFMAL  133 (140)
T ss_dssp             -----------EEEEEEEEEESEEEE--CCC-------CSSCSCEEEECHHHHTTSCCCTTHHHHHHHHHHH
T ss_pred             -----------cEEEEEEEEEEeeCC--CcC-------CCccceeEEeCHHHHhhCCCChhHHHHHHHHHHH
Confidence                       112334555544321  111       24778899999999998876 4557777777654

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.69  E-value=1.3e-16  Score=122.84  Aligned_cols=116  Identities=20%  Similarity=0.392  Sum_probs=78.7

Q ss_pred             ceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086           68 RNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~  137 (214)
                      ..++++|++.+|+|||++|...   +|.|.+|||     |++.+||+||++||||+..  ..+++.    +.+.++..  
T Consensus        22 ~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~----~~~~~~~~--   95 (153)
T 3ees_A           22 IPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLA----CTHSYGDV--   95 (153)
T ss_dssp             EEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEE----EEEEETTE--
T ss_pred             EEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEE----EEEecCCC--
Confidence            4556666778899999999764   389999999     9999999999999999983  233332    22222211  


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT  210 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~  210 (214)
                                  ....++|.+....+  .+       ...|+.+++|++++++.++.. +..+.+++.+.+.+.
T Consensus        96 ------------~~~~~~~~~~~~~~--~~-------~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~  148 (153)
T 3ees_A           96 ------------GILILFYEILYWKG--EP-------RAKHHMMLEWIHPEELKHRNIPEANRKILHKIYKALG  148 (153)
T ss_dssp             ------------EEEEEEEEECEEES--CC-------CCSSSSEEEEECGGGGGGSCCCHHHHTTHHHHHHHTT
T ss_pred             ------------eEEEEEEEEEECCC--Cc-------CCCccceEEEecHHHhhhCCCCcchHHHHHHHHHhhc
Confidence                        12234555544322  11       234788999999999998766 445667777766543

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.68  E-value=2.2e-16  Score=121.80  Aligned_cols=100  Identities=16%  Similarity=0.149  Sum_probs=65.7

Q ss_pred             EEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccc
Q 028086           73 CLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQ  143 (214)
Q Consensus        73 vI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~  143 (214)
                      +|++.+|+|||++|.+.  ++.|.+|||     |++.+||+||++||||++.  ..+++.    +.+.++...       
T Consensus        13 ~ii~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~----~~~~~~~~~-------   81 (153)
T 2b0v_A           13 AVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGI----YHWTCASNG-------   81 (153)
T ss_dssp             EECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEE----EEEEETTTT-------
T ss_pred             EEEeeCCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEE----EEEeCCCCC-------
Confidence            34456889999998764  368999999     9999999999999999984  223322    223322210       


Q ss_pred             cCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          144 WGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       144 ~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                           .....++|.+........ .     ..++|+.+++|++++++.++.
T Consensus        82 -----~~~~~~~f~~~~~~~~~~-~-----~~~~e~~~~~W~~~~el~~~~  121 (153)
T 2b0v_A           82 -----TTYLRFTFSGQVVSFDPD-R-----KLDTGIVRAAWFSIDEIRAKQ  121 (153)
T ss_dssp             -----EEEEEEEEEEEEEEECTT-S-----CCCTTEEEEEEEEHHHHHHTG
T ss_pred             -----cEEEEEEEEEEeCCCCCC-C-----CCCCCeeeEEEecHHHHhhhh
Confidence                 112334566655432110 1     124588999999999999863

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.68  E-value=1.9e-16  Score=124.91  Aligned_cols=120  Identities=19%  Similarity=0.249  Sum_probs=81.4

Q ss_pred             cceEEEEEEecCCcEEEEeecCC----CCCee-cCCC-----CCHHHHHHHHHHHHhCCCccee-eeeccceEEec-CCc
Q 028086           67 RRNVGICLINSSKKIFAASRLDI----PDSWQ-MPQN-----EDPKVAALRELKEETGVSSAEV-LAEVPYWLTYD-FPP  134 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~----~g~W~-lPgG-----Es~~eAA~REl~EETGl~~~~~-l~~~~~~~~~~-~p~  134 (214)
                      +++|+++|++.+|+|||++|...    +|.|. +|||     ||+.+||+||++||||+..... +...   ..+. ++.
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~---~~~~~~~~  110 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPL---ASFSPFQT  110 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEE---EEECSSSS
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEE---EEEeccCC
Confidence            67788888999999999998643    58998 9999     9999999999999999984221 1111   1111 111


Q ss_pred             hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc---cCCHHHHHHHHHhhc
Q 028086          135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV---DFKKPVYKEVFTVFT  210 (214)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~---~~~~~~~~~~l~~~~  210 (214)
                      .             .....++|.+... +  ++.+     ++.|+.+++|++++++.++..   +..+.+++.+...++
T Consensus       111 ~-------------~~~~~~~f~~~~~-~--~~~~-----~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~l~~~~~  168 (171)
T 1q27_A          111 T-------------LSSFMCVYELRSD-A--TPIF-----NPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCYR  168 (171)
T ss_dssp             C-------------CSSEEEEEEEECC-C--CCCS-----CTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHHHHHHT
T ss_pred             C-------------CccEEEEEEEEEC-C--cccc-----CchhhheEEEecHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence            1             0124556666552 2  2332     235888999999999986544   456777777766553

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.68  E-value=1.5e-16  Score=127.20  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=76.7

Q ss_pred             cceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~  137 (214)
                      ++.++++|++.+|+|||++|.+.  +|.|.+|||     |++.+||+||++||||++.  ...++.    +.+.++... 
T Consensus        24 ~~~~~~~vi~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~----~~~~~~~~~-   98 (176)
T 3q93_A           24 SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQ----IVFEFVGEP-   98 (176)
T ss_dssp             EEEEEEEEEECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEE----EEEEETTCS-
T ss_pred             CcEEEEEEEEeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEE----EEEEcCCCC-
Confidence            45556666778899999998654  489999999     9999999999999999984  333332    222222110 


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV  208 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~  208 (214)
                                 .....++|++....+  .+.       ..|..+++|++++++..+.. +..+.+++.+++.
T Consensus        99 -----------~~~~~~~f~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  150 (176)
T 3q93_A           99 -----------ELMDVHVFCTDSIQG--TPV-------ESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQK  150 (176)
T ss_dssp             -----------CEEEEEEEEESCEES--CCC-------CCSSEEEEEEETTCCCGGGBCTTHHHHHHHHHTT
T ss_pred             -----------cEEEEEEEEEECCCC--CcC-------CCcceeeEEeeHHHccccccCcchHHHHHHHHcC
Confidence                       112234444432211  222       23667789999999987765 5567777777653

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.66  E-value=1.9e-16  Score=122.35  Aligned_cols=107  Identities=22%  Similarity=0.175  Sum_probs=68.0

Q ss_pred             cceEEEEEEecCCcEEEEeecCCC---CCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDIP---DSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~~---g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~  138 (214)
                      +.+|++++++.+|+|||+++.+.+   +.|++|||     ||+++||+||++||||++...+ ..... + +..+ +   
T Consensus         5 ~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~l~~-~-~~~~-~---   77 (145)
T 2w4e_A            5 PRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEW-VPLPG-F-YPQP-S---   77 (145)
T ss_dssp             CEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEE-EECCC-B-BSCT-T---
T ss_pred             CCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeE-EEEec-C-cCCC-C---
Confidence            457888888999999888764332   48999999     9999999999999999984321 11111 1 1111 1   


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                               ......++|++...... ....     +++|+.+++|++++++.+++.
T Consensus        78 ---------~~~~~~~~f~~~~~~~~-~~~~-----~~~E~~~~~w~~~~el~~~~~  119 (145)
T 2w4e_A           78 ---------ISGVVFYPLLALGVTLG-AAQL-----EDTETIERVVLPLAEVYRMLE  119 (145)
T ss_dssp             ---------TCCCEEEEEEEEEEEEC--------------CEEEEEEEHHHHHHHHH
T ss_pred             ---------ccCceEEEEEEEecccC-CCCC-----CCCCeEEEEEEeHHHHHHHHH
Confidence                     12344566666532111 2222     345889999999999988765

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.65  E-value=7.1e-16  Score=135.07  Aligned_cols=132  Identities=17%  Similarity=0.200  Sum_probs=87.7

Q ss_pred             CccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCch
Q 028086           65 GYRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPE  135 (214)
Q Consensus        65 ~~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~  135 (214)
                      ..+.+|+++|+ .+|+|||++|.+.  +|.|.+|||     ||+++||+||++||||++..  .+++.......|.+|..
T Consensus       206 ~~~~~v~~vv~-~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~  284 (352)
T 2qjt_B          206 PNFVTVDALVI-VNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDR  284 (352)
T ss_dssp             CEEEEEEEEEE-ETTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTS
T ss_pred             CCceEEEEEEE-ECCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCC
Confidence            44567777777 5789999999765  389999999     99999999999999999842  22221112223444432


Q ss_pred             hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeCh-hHHhhc---CccCCHHHHHHHHHhhcc
Q 028086          136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSP-EQILER---AVDFKKPVYKEVFTVFTP  211 (214)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~-~el~~~---~~~~~~~~~~~~l~~~~~  211 (214)
                      ..          ......+.|++....+...+..    .+.+|+.+++|+++ +++.++   ..+..+.+++++++.+.+
T Consensus       285 ~~----------~~~~~~~~f~~~~~~~~~~~~~----~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~~l~~  350 (352)
T 2qjt_B          285 SV----------RGRTISHVGLFVFDQWPSLPEI----NAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLEECGK  350 (352)
T ss_dssp             CT----------TSEEEEEEEEEEECSCSSCCCC----CCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHHHTC-
T ss_pred             CC----------CccEEEEEEEEEEeCCCCCCcc----CCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHHHHhcc
Confidence            10          0012445666766543211221    13468999999999 999985   446678899998887643

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.65  E-value=1.7e-16  Score=123.01  Aligned_cols=110  Identities=14%  Similarity=0.213  Sum_probs=72.4

Q ss_pred             CCCccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCch
Q 028086           63 PEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPE  135 (214)
Q Consensus        63 ~~~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~  135 (214)
                      ...++.+++++|++ +|+|||++|   +|.|.+|||     |++.+||+||++||||+..  .+++...    .+.++..
T Consensus        15 ~~~~~~~~~~ii~~-~~~vLl~~r---~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~----~~~~~~~   86 (154)
T 2pqv_A           15 NTVFGVRATALIVQ-NHKLLVTKD---KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVV----ENRFEVD   86 (154)
T ss_dssp             TEEEEEEEEECCEE-TTEEEEEEE---TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEE----EEEEEET
T ss_pred             CceEeEEEEEEEEE-CCEEEEEec---CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEE----eeeecCC
Confidence            34456777777775 789999999   589999999     9999999999999999984  2233222    1111111


Q ss_pred             hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      .          ...+...++|.+....+... ...    +++|+.+++|++++++.++..
T Consensus        87 ~----------~~~~~~~~~f~~~~~~~~~~-~~~----~~~e~~~~~W~~~~el~~~~~  131 (154)
T 2pqv_A           87 G----------VSYHNIEFHYLVDLLEDAPL-TMQ----EDEKRQPCEWIDLDKLQNIQL  131 (154)
T ss_dssp             T----------EEEEEEEEEEEEEESSCCCS-EEE----ETTEEEEEEEEEGGGGGGSCE
T ss_pred             C----------CcceEEEEEEEEEecCCCCc-ccC----CCCceeeEEEeEHHHHhhcCc
Confidence            0          00122345677766543211 111    235788999999999998654

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.64  E-value=1e-15  Score=123.54  Aligned_cols=106  Identities=20%  Similarity=0.200  Sum_probs=73.0

Q ss_pred             CccceEEEEEEecCC--cEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEec
Q 028086           65 GYRRNVGICLINSSK--KIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYD  131 (214)
Q Consensus        65 ~~~~~v~vvI~~~~g--~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~  131 (214)
                      +.+.++++++++.+|  +|||++|.+.    +|.|.+|||     ||+++||+||++||||++.  .+.++.....+.  
T Consensus        32 ~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~--  109 (194)
T 1nqz_A           32 HYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFT--  109 (194)
T ss_dssp             -CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEE--
T ss_pred             CCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccC--
Confidence            456777777778888  9999998752    589999999     9999999999999999984  334443322111  


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcce-eeccCCCCCcCceeeEEEeChhHH-hhcC
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEE-INLLGDKSEKPEFGEWKWMSPEQI-LERA  194 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~-i~l~~~~~~~~E~~~~~Wv~~~el-~~~~  194 (214)
                                      ..+...++|++...+. .. ...     +.+|+.+++|++++++ .+..
T Consensus       110 ----------------~~~~~~~~f~~~~~~~-~~~~~~-----~~~E~~~~~W~~~~el~~~~~  152 (194)
T 1nqz_A          110 ----------------PVGFHVTPVLGRIAPE-ALDTLR-----VTPEVAQIITPTLAELRAVPL  152 (194)
T ss_dssp             ----------------TTTEEEEEEEEEECGG-GGGGCC-----CCTTEEEEECCBHHHHHHSCC
T ss_pred             ----------------CCCeEEEEEEEEecCC-ccccCC-----CccceeEEEEEEHHHhccCCC
Confidence                            0133456677776532 11 222     3458999999999999 6543

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.64  E-value=7.2e-17  Score=120.84  Aligned_cols=109  Identities=23%  Similarity=0.351  Sum_probs=73.5

Q ss_pred             EEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhh
Q 028086           70 VGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREK  139 (214)
Q Consensus        70 v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~  139 (214)
                      ++++|++.+|+|||++|...   +|.|++|||     |++.+||+||++||||+...  ..++..    .+.++..    
T Consensus         7 ~~~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~----~~~~~~~----   78 (129)
T 1mut_A            7 AVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKL----EYEFPDR----   78 (129)
T ss_dssp             CCEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCC----BCCCSSC----
T ss_pred             EEEEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEE----EEecCCc----
Confidence            34455688899999998764   489999999     99999999999999999842  222221    1222110    


Q ss_pred             hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHH
Q 028086          140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEV  205 (214)
Q Consensus       140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~  205 (214)
                                ....++|.+....+  .+.       .+|+.+++|++++++.++.. +..+.+++.+
T Consensus        79 ----------~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~l  126 (129)
T 1mut_A           79 ----------HITLWFWLVERWEG--EPW-------GKEGQPGEWMSLVGLNADDFPPANEPVIAKL  126 (129)
T ss_dssp             ----------EEECCCEEEEECSS--CCC-------CCSSCCCEEEESSSCCTTTSCTTCHHHHHHH
T ss_pred             ----------eEEEEEEEEEccCC--ccC-------CcccceeEEeCHHHcccccCCchhHHHHHHH
Confidence                      11224555555422  121       24778899999999988766 4667777665

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.64  E-value=4.8e-16  Score=135.34  Aligned_cols=127  Identities=14%  Similarity=0.158  Sum_probs=78.7

Q ss_pred             ccceEEEEEEecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086           66 YRRNVGICLINSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~  136 (214)
                      .+.+|+++|+ .+|+|||++|.+.  +|.|.+|||     ||+++||+||++||||++..  .+++.......|.+|...
T Consensus       202 ~~~~v~~vi~-~~~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  280 (341)
T 2qjo_A          202 TFITTDAVVV-QAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRS  280 (341)
T ss_dssp             CEEEEEEEEE-ETTEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSC
T ss_pred             CceEEEEEEE-eCCEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCCC
Confidence            4567777776 5789999999764  489999999     99999999999999999842  233222122334444321


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc---CccCCHHHHHHHHHh
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER---AVDFKKPVYKEVFTV  208 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~---~~~~~~~~~~~~l~~  208 (214)
                      .          ......++|++....+. ....    .+++|+.+++|++++++.++   ..+..+.++++++..
T Consensus       281 ~----------~~~~~~~~f~~~~~~~~-~~~~----~~~~e~~~~~W~~~~el~~~~~~~~~~~~~il~~~~~~  340 (341)
T 2qjo_A          281 L----------RGRTITHAYFIQLPGGE-LPAV----KGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFVSK  340 (341)
T ss_dssp             T----------TSCEEEEEEEEECCSSS-CCCC----C------CEEEEEHHHHHHTGGGBCTTHHHHHHHHC--
T ss_pred             C----------CCcEEEEEEEEEecCCC-cCcc----CCCCceeeEEEeeHHHHhhhhhhhchHHHHHHHHHHhc
Confidence            0          01223466777654332 1111    13458899999999999986   446667777776543

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.64  E-value=1.2e-16  Score=136.68  Aligned_cols=107  Identities=14%  Similarity=0.286  Sum_probs=68.8

Q ss_pred             ceEEEEEEec-CCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhc
Q 028086           68 RNVGICLINS-SKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLK  141 (214)
Q Consensus        68 ~~v~vvI~~~-~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~  141 (214)
                      ++++++|++. +|+|||++|.+.+|.|.+|||     ||+++||+||++||||++...+... ..+....          
T Consensus       102 ~~v~avv~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~-~~~~~~~----------  170 (271)
T 2a6t_A          102 PVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINP-NEFIDMT----------  170 (271)
T ss_dssp             CEEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCT-TCEEEEE----------
T ss_pred             CeEEEEEEECCCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeee-eeeccCC----------
Confidence            4567778776 489999999876799999999     9999999999999999985433221 1111111          


Q ss_pred             cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                            +.++..++|++...........    .+.+|+.+++|++++++.++..
T Consensus       171 ------~~~~~~~~f~~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~~  214 (271)
T 2a6t_A          171 ------IRGQNVRLYIIPGISLDTRFES----RTRKEISKIEWHNLMDLPTFKK  214 (271)
T ss_dssp             ------ETTEEEEEEEECCCCTTCCCC----------EEEEEEEEGGGSTTCC-
T ss_pred             ------cCCceEEEEEEEEecCcccCCC----CCccceeEEEEEEHHHHHHHHh
Confidence                  1133445565554322111111    1346899999999999987643

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.63  E-value=2.6e-16  Score=131.08  Aligned_cols=121  Identities=12%  Similarity=0.125  Sum_probs=78.2

Q ss_pred             CccceEEEEEE---ecCCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC
Q 028086           65 GYRRNVGICLI---NSSKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF  132 (214)
Q Consensus        65 ~~~~~v~vvI~---~~~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~  132 (214)
                      ..+.+|+++|+   +++++|||++|...  +|.|.+|||     ||+.+||+||++||||++..  +.++      .+..
T Consensus        11 ~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~------~~~~   84 (226)
T 2fb1_A           11 TFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVG------AFGA   84 (226)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEE------EECC
T ss_pred             CCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEE------EeCC
Confidence            34667788887   45679999999764  389999999     99999999999999999842  2222      2222


Q ss_pred             CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhh
Q 028086          133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF  209 (214)
Q Consensus       133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~  209 (214)
                      +...         +. .......|++....+  ....     +.+|+.+++|++++++.++..+ .+.+++.++..+
T Consensus        85 ~~r~---------~~-~~~v~~~y~a~~~~~--~~~~-----~~~e~~~~~W~~~~el~~l~~d-h~~il~~a~~rl  143 (226)
T 2fb1_A           85 IDRD---------PG-ERVVSIAYYALININ--EYDR-----ELVQKHNAYWVNINELPALIFD-HPEMVDKAREMM  143 (226)
T ss_dssp             TTSS---------SS-SCEEEEEEEEECCTT--SSCH-----HHHHHTTEEEEETTSCCCBSTT-HHHHHHHHHHHH
T ss_pred             CCcC---------CC-ceEEEEEEEEEecCc--cccc-----CCccccceEEEEHHHhhhccCC-HHHHHHHHHHHH
Confidence            2110         00 112334455554432  1111     1247889999999999876554 345666665544

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.63  E-value=2e-16  Score=126.29  Aligned_cols=106  Identities=17%  Similarity=0.112  Sum_probs=72.3

Q ss_pred             cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~  136 (214)
                      +.+|++++++.+|+|||++|.+.   +|.|++|||     ||+.+||+||++||||+...  ..++..     +..+   
T Consensus        41 ~~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~-----~~~~---  112 (182)
T 2yvp_A           41 VAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSF-----HPQP---  112 (182)
T ss_dssp             CEEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCB-----CSCT---
T ss_pred             CCEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEE-----eCCC---
Confidence            35778888888999999998653   479999999     99999999999999999842  222221     0111   


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                                .......++|++........+.     .+..|+.+++|++++++.+++.
T Consensus       113 ----------~~~~~~~~~f~~~~~~~~~~~~-----~~~~E~~~~~W~~~~el~~~~~  156 (182)
T 2yvp_A          113 ----------SFTAVVFHPFLALKARVVTPPT-----LEEGELLESLELPLTEVYALLA  156 (182)
T ss_dssp             ----------TTBCCEEEEEEECSCEECSCCC-----CCTTCCEEEEEEEHHHHHHHHH
T ss_pred             ----------CccccEEEEEEEeccccCCCCC-----CCCCceEEEEEEEHHHHHHHHH
Confidence                      1123445666655321111221     1346899999999999998765

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.63  E-value=3.4e-16  Score=125.87  Aligned_cols=123  Identities=20%  Similarity=0.181  Sum_probs=77.7

Q ss_pred             ceEEEEEEe---c----CCcEEEEeec---------CCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeec
Q 028086           68 RNVGICLIN---S----SKKIFAASRL---------DIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEV  124 (214)
Q Consensus        68 ~~v~vvI~~---~----~g~vLL~rR~---------~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~  124 (214)
                      .+|+++|+.   .    +++|||++|.         ..+|.|.+|||     ||+.+||+||++||||++.  .+.++. 
T Consensus        28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~-  106 (187)
T 3i9x_A           28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGV-  106 (187)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEE-
T ss_pred             ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEE-
Confidence            566666653   2    4689999994         23589999999     9999999999999999984  233322 


Q ss_pred             cceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHH
Q 028086          125 PYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYK  203 (214)
Q Consensus       125 ~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~  203 (214)
                           +..+...         +. ......+|.+...........     ..+|+.+++|++++++.++.. +..+.+++
T Consensus       107 -----~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~-----~~~E~~~~~W~~~~el~~~~l~~~~~~il~  166 (187)
T 3i9x_A          107 -----FDKPGRD---------PR-GWIISRAFYAIVPPEALEKRA-----AGDDAAEIGLFPMTEALELPLAFDHLDMLK  166 (187)
T ss_dssp             -----ECCTTSS---------TT-SSEEEEEEEEECCHHHHHHHH-----HSTTTTTEEEEEHHHHTTSCBSTTHHHHHH
T ss_pred             -----EcCCccC---------CC-CCEEEEEEEEEEcCcccCCcC-----CCCceeEEEEEeHHHcccCCCCccHHHHHH
Confidence                 2222110         00 012233444433322111111     134788899999999998655 55677888


Q ss_pred             HHHHhhcc
Q 028086          204 EVFTVFTP  211 (214)
Q Consensus       204 ~~l~~~~~  211 (214)
                      ++++.+..
T Consensus       167 ~a~~~l~~  174 (187)
T 3i9x_A          167 KAFSAITE  174 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88877654

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.63  E-value=1e-15  Score=124.56  Aligned_cols=107  Identities=22%  Similarity=0.397  Sum_probs=69.9

Q ss_pred             CCccceEEEEEE--ecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCc
Q 028086           64 EGYRRNVGICLI--NSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPP  134 (214)
Q Consensus        64 ~~~~~~v~vvI~--~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~  134 (214)
                      .+++..++++|+  +.+++|||++|.+.+|.|.+|||     ||+++||+||++||||++.  .++++.      +.++.
T Consensus        37 ~~~~~~~~~vi~~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~------~~~~~  110 (194)
T 2fvv_A           37 DGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGI------FENQE  110 (194)
T ss_dssp             TSCEEEEEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEE------EEETT
T ss_pred             CCccccEEEEEEEECCCCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEE------EEcCC
Confidence            455666677766  34689999999876799999999     9999999999999999983  222222      11111


Q ss_pred             hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                                    .....++|++...+.......     ..++..+++|++++++.+++.
T Consensus       111 --------------~~~~~~~f~~~~~~~~~~~~~-----~~e~~~~~~W~~~~el~~~l~  152 (194)
T 2fvv_A          111 --------------RKHRTYVYVLIVTEVLEDWED-----SVNIGRKREWFKIEDAIKVLQ  152 (194)
T ss_dssp             --------------TTEEEEEEEEEEEEECSSCHH-----HHHHCCCEEEEEHHHHHHHHT
T ss_pred             --------------CceEEEEEEEEEccccCCCCC-----cccccceEEEEEHHHHHHHHh
Confidence                          122345566654321101110     112346899999999987654

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.63  E-value=6.6e-16  Score=124.81  Aligned_cols=118  Identities=18%  Similarity=0.195  Sum_probs=72.9

Q ss_pred             ceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhh
Q 028086           68 RNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      +.++++|++ +|+|||++|.. +|.|.+|||     |++.+||+||++||||++.  .++++...    +.++....   
T Consensus         5 ~v~~~vi~~-~~~vLL~~r~~-~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~----~~~~~~~~---   75 (188)
T 3fk9_A            5 RVTNCIVVD-HDQVLLLQKPR-RGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFS----MVIFDEGK---   75 (188)
T ss_dssp             EEEEEEEEE-TTEEEEEECTT-TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEE----EEEEETTE---
T ss_pred             EEEEEEEEE-CCEEEEEEeCC-CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEE----EEecCCCc---
Confidence            445555554 78999999865 699999999     9999999999999999983  33333321    11111100   


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV  208 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~  208 (214)
                            .......++|.+....+  .+..      ..|..+++|++++++.++.. +..+.+++.+++.
T Consensus        76 ------~~~~~~~~~f~a~~~~~--~~~~------~~e~~~~~W~~~~el~~~~l~~~~~~~l~~~l~~  130 (188)
T 3fk9_A           76 ------IVSEWMLFTFKATEHEG--EMLK------QSPEGKLEWKKKDEVLELPMAAGDKWIFKHVLHS  130 (188)
T ss_dssp             ------EEEEEEEEEEEESCEES--CCCS------EETTEEEEEEEGGGGGGSCCCHHHHHHHHHHTTC
T ss_pred             ------ceEEEEEEEEEEECCCC--CCcC------CCCCEeEEEEEHHHhhhCCCCHHHHHHHHHHHcC
Confidence                  00000223333332211  2211      12446899999999998765 5566777777654

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.61  E-value=1.6e-15  Score=120.16  Aligned_cols=111  Identities=16%  Similarity=0.187  Sum_probs=70.9

Q ss_pred             eEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhccc
Q 028086           69 NVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQ  143 (214)
Q Consensus        69 ~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~~  143 (214)
                      .++++|++.+|+|||++|.  +|.|.+|||     ||+.+||+||++||||++.... .   ....|.++          
T Consensus        17 ~~~~~ii~~~~~vLL~~r~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~---~l~~~~~~----------   80 (163)
T 3f13_A           17 RRATAIIEMPDGVLVTASR--GGRYNLPGGKANRGELRSQALIREIREETGLRINSM-L---YLFDHITP----------   80 (163)
T ss_dssp             EEEEEECEETTEEEEEECC-----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEE-E---EEEEEECS----------
T ss_pred             EEEEEEEEeCCEEEEEEEC--CCeEECCceeCCCCCCHHHHHHHHHHHHHCccccee-E---EEEEEecC----------
Confidence            3455555677899999986  489999999     9999999999999999984221 1   11223322          


Q ss_pred             cCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhc
Q 028086          144 WGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFT  210 (214)
Q Consensus       144 ~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~  210 (214)
                            ....++|++.+.+   ++...      +|+.+++|++.+.....+.+..+.+++.+++...
T Consensus        81 ------~~~~~~f~~~~~~---~~~~~------~E~~~~~W~~~~~~~~~l~~~~~~il~~~~~~~~  132 (163)
T 3f13_A           81 ------FNAHKVYLCIAQG---QPKPQ------NEIERIALVSSPDTDMDLFVEGRAILRRYARLRN  132 (163)
T ss_dssp             ------SEEEEEEEEEC-C---CCCCC------TTCCEEEEESSTTCSSCBCHHHHHHHHHHHHHTT
T ss_pred             ------CeEEEEEEEEECC---cCccC------CCceEEEEECcccccCCCCHHHHHHHHHHHHhhh
Confidence                  1234566665432   23332      3889999999544433444666777777766543

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.61  E-value=2.1e-15  Score=119.28  Aligned_cols=105  Identities=27%  Similarity=0.399  Sum_probs=67.7

Q ss_pred             cceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~  138 (214)
                      +.+|++++++ +|+|||++|.+.   ++.|.+|||     ||+++||+||++||||+ ... +..... + +..+ +   
T Consensus        34 ~~~v~vii~~-~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~-~~~l~~-~-~~~~-~---  104 (170)
T 1v8y_A           34 KPAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGD-LTYLFS-Y-FVSP-G---  104 (170)
T ss_dssp             CCEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEE-EEEEEE-E-ESCT-T---
T ss_pred             CCeEEEEEEE-CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcC-ceeeEE-E-ecCC-C---
Confidence            4578888888 899999987543   479999999     99999999999999999 432 221111 1 1111 1   


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                               ......++|++....+ .....     +++|+.+++|++++++.+++.
T Consensus       105 ---------~~~~~~~~f~~~~~~~-~~~~~-----~~~E~~~~~W~~~~el~~~~~  146 (170)
T 1v8y_A          105 ---------FTDEKTHVFLAENLKE-VEAHP-----DEDEAIEVVWMRPEEALERHQ  146 (170)
T ss_dssp             ---------TBCCEEEEEEEEEEEE-CC-------------CEEEEECHHHHHHHHH
T ss_pred             ---------ccccEEEEEEEEeccc-cCCCC-----CCCceEEEEEEEHHHHHHHHH
Confidence                     1234556677665421 11221     345889999999999988765

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.60  E-value=4.3e-15  Score=127.09  Aligned_cols=109  Identities=16%  Similarity=0.252  Sum_probs=74.7

Q ss_pred             EEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhhhhhcccc
Q 028086           73 CLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVREKLKHQW  144 (214)
Q Consensus        73 vI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~~~l~~~~  144 (214)
                      ++++.+++|||++|... +|.|.+|||     ||+++||+||++||||++..  ++++..    .+.++           
T Consensus       145 v~v~~~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~----~~~~~-----------  209 (269)
T 1vk6_A          145 VAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQ----PWPFP-----------  209 (269)
T ss_dssp             EEEEETTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEE----EEETT-----------
T ss_pred             EEEEeCCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEE----ecCCC-----------
Confidence            34556789999999765 489999999     99999999999999999842  233221    12222           


Q ss_pred             CCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC--HHHHHHHHHh
Q 028086          145 GGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK--KPVYKEVFTV  208 (214)
Q Consensus       145 ~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~--~~~~~~~l~~  208 (214)
                           ++..++|++...++  ++.+     +.+|+.+++|++++++..+..+..  +.+++..+..
T Consensus       210 -----~~~~~~f~a~~~~~--~~~~-----~~~E~~~~~W~~~~el~~l~~~~si~~~li~~~l~~  263 (269)
T 1vk6_A          210 -----QSLMTAFMAEYDSG--DIVI-----DPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAM  263 (269)
T ss_dssp             -----EEEEEEEEEEEEEC--CCCC-----CTTTEEEEEEEETTSCCSCCCTTSHHHHHHHHHHHH
T ss_pred             -----CEEEEEEEEEECCC--CcCC-----CCcceEEEEEEEHHHhhhcccCcHHHHHHHHHHHHH
Confidence                 33456677776543  3333     245899999999999987654332  4555555544

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.59  E-value=6.3e-15  Score=114.12  Aligned_cols=115  Identities=13%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             ccceEEEEEEecCCc----EEEEeecCCC-CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCC
Q 028086           66 YRRNVGICLINSSKK----IFAASRLDIP-DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFP  133 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~----vLL~rR~~~~-g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p  133 (214)
                      .+.+|+++|.+ +++    ||+++|...+ ..|.+|||     ||+.+||+||++||||+..  ..+++.    +.+.++
T Consensus         7 ~~~~~~~ii~~-~~~~~~~vLl~~r~~~~~~gw~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~----~~~~~~   81 (155)
T 2b06_A            7 TILTNICLIED-LETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGI----KNWPLD   81 (155)
T ss_dssp             EEEEEEEEEEE-TTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEE----EEEECT
T ss_pred             cEEEEEEEEEE-CCCCeEEEEEEECCCCCCCCEeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEE----EeeccC
Confidence            45667777766 666    9999887642 22899999     9999999999999999983  223322    112211


Q ss_pred             chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC-CHHHHHHHHH
Q 028086          134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF-KKPVYKEVFT  207 (214)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~-~~~~~~~~l~  207 (214)
                      ++             .....++|.+....+  .+.       ..|+.+++|++++++.++..+. .+.+++.++.
T Consensus        82 ~~-------------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  134 (155)
T 2b06_A           82 TG-------------GRYIVICYKATEFSG--TLQ-------SSEEGEVSWVQKDQIPNLNLAYDMLPLMEMMEA  134 (155)
T ss_dssp             TS-------------CEEEEEEEEECEEEE--CCC-------CBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHHC
T ss_pred             CC-------------ceEEEEEEEEEecCC--CCC-------CCcceeeEEeeHHHhhhCCCChhHHHHHHHHhC
Confidence            11             122334444443321  111       2377899999999999887743 4556665543

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.58  E-value=2.9e-15  Score=125.86  Aligned_cols=121  Identities=17%  Similarity=0.253  Sum_probs=77.0

Q ss_pred             cceEEEEEE---ecCCcEEEEeecCC--CCCeecCCC-------CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC
Q 028086           67 RRNVGICLI---NSSKKIFAASRLDI--PDSWQMPQN-------EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF  132 (214)
Q Consensus        67 ~~~v~vvI~---~~~g~vLL~rR~~~--~g~W~lPgG-------Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~  132 (214)
                      ..+|+++|+   +.+++|||++|...  +|.|.+|||       ||+.+||+||++||||++..  +.++      .+..
T Consensus        22 ~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~------~~~~   95 (240)
T 3gz5_A           22 LLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLC------TVGN   95 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEE------EEEE
T ss_pred             ccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEE------EeCC
Confidence            456777776   34469999999864  389999999       78999999999999999842  2222      1221


Q ss_pred             CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC-HHHHHHHHHhhc
Q 028086          133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK-KPVYKEVFTVFT  210 (214)
Q Consensus       133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~-~~~~~~~l~~~~  210 (214)
                      +...         +. .....+.|++.....  ....     ..+|+.+++|++++++.+....+. +.+++.+++.+.
T Consensus        96 ~~r~---------~~-~~~~~~~y~a~~~~~--~~~~-----~~~e~~~~~W~~~~el~~~~l~~dh~~il~~a~~rlr  157 (240)
T 3gz5_A           96 NSRD---------AR-GWSVTVCYTALMSYQ--ACQI-----QIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLT  157 (240)
T ss_dssp             SSSS---------TT-SCEEEEEEEEECCHH--HHHH-----HHTTCTTEEEEEHHHHTTSCCSTTHHHHHHHHHHHHH
T ss_pred             CccC---------CC-ceEEEEEEEEEeccc--ccCC-----CCCcccceEEecHHHcccCCcchhHHHHHHHHHHHHH
Confidence            1110         00 112334455544322  1111     124788999999999986555444 567777766543

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.57  E-value=6.6e-15  Score=114.43  Aligned_cols=115  Identities=20%  Similarity=0.272  Sum_probs=73.0

Q ss_pred             cceEEEEEEec---CCcEEEEeecCC---CCCeecCCC-----CCHH-HHHHHHHHHHhC-CCc--ceeeeeccceEEec
Q 028086           67 RRNVGICLINS---SKKIFAASRLDI---PDSWQMPQN-----EDPK-VAALRELKEETG-VSS--AEVLAEVPYWLTYD  131 (214)
Q Consensus        67 ~~~v~vvI~~~---~g~vLL~rR~~~---~g~W~lPgG-----Es~~-eAA~REl~EETG-l~~--~~~l~~~~~~~~~~  131 (214)
                      |..+.++|++.   +|+|||++|...   +|.|++|||     |++. +||+||++|||| +..  ...++..    .+.
T Consensus        19 ~~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~----~~~   94 (155)
T 1x51_A           19 ESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEV----VHT   94 (155)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCB----CCB
T ss_pred             EEEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceE----EEe
Confidence            44455556665   579999998764   389999999     7886 999999999999 763  2223221    122


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc-CCHHHHHHHHHh
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD-FKKPVYKEVFTV  208 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~~~~~l~~  208 (214)
                      |..              .....++|.+...++  .+.       ..|..+++|++++++.++..+ ..+.+++.++..
T Consensus        95 ~~~--------------~~~~~~~~~~~~~~~--~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  149 (155)
T 1x51_A           95 FSH--------------IKLTYQVYGLALEGQ--TPV-------TTVPPGARWLTQEEFHTAAVSTAMKKVFRVYQGQ  149 (155)
T ss_dssp             CSS--------------CEEEEEEEEEECSSC--CCC-------CCCCTTEEEEEHHHHHHSCCCHHHHHHHHHHHHT
T ss_pred             cCC--------------ccEEEEEEEEEEcCC--CCC-------CCCCCccEEccHHHhhhcCCCHHHHHHHHHHHhc
Confidence            211              011234555554322  111       135678999999999987663 345666666554

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.56  E-value=1.5e-14  Score=119.58  Aligned_cols=122  Identities=15%  Similarity=0.149  Sum_probs=75.7

Q ss_pred             CCCCccceEEEEEEecCCcEEEEeecCCC------CCeec-CCC-----CC------HHHHHHHHHHHHhCCCc--ceee
Q 028086           62 PPEGYRRNVGICLINSSKKIFAASRLDIP------DSWQM-PQN-----ED------PKVAALRELKEETGVSS--AEVL  121 (214)
Q Consensus        62 ~~~~~~~~v~vvI~~~~g~vLL~rR~~~~------g~W~l-PgG-----Es------~~eAA~REl~EETGl~~--~~~l  121 (214)
                      ....++..+..+|++.+|+|||++|...+      |.|.+ |||     ||      +++||+||++||||++.  ..++
T Consensus        62 ~d~~~~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~i  141 (211)
T 3e57_A           62 YDETTKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFL  141 (211)
T ss_dssp             TCTTEEEEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCcccceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEE
Confidence            34467787877888889999999997653      68998 999     87      49999999999999973  2222


Q ss_pred             eeccceEEecC-CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC---
Q 028086          122 AEVPYWLTYDF-PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF---  197 (214)
Q Consensus       122 ~~~~~~~~~~~-p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~---  197 (214)
                      +.    +.+.. +.+.             .....+|.++..    ...+.     ..|..+++|++++++.++...+   
T Consensus       142 g~----~~~~~~~~~~-------------~~l~~~f~~~~~----~g~~~-----~~E~~~~~W~~~~eL~~~~~~le~w  195 (211)
T 3e57_A          142 GL----INSSTTEVSR-------------VHLGALFLGRGK----FFSVK-----EKDLFEWELIKLEELEKFSGVMEGW  195 (211)
T ss_dssp             EE----EECCSSHHHH-------------TEEEEEEEEEEE----EEEES-----CTTTCEEEEEEHHHHHHHGGGCCHH
T ss_pred             EE----EeccCCCCCe-------------EEEEEEEEEEeC----CceeC-----CCCeEEEEEEEHHHHHHhHhhccch
Confidence            22    22211 1111             112234555543    12222     2477889999999999885544   


Q ss_pred             CHHHHHHHHHhh
Q 028086          198 KKPVYKEVFTVF  209 (214)
Q Consensus       198 ~~~~~~~~l~~~  209 (214)
                      .+.+++.+.+++
T Consensus       196 S~lvl~~l~~~~  207 (211)
T 3e57_A          196 SKISAAVLLNLF  207 (211)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHH
Confidence            355665554543

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.56  E-value=5.5e-15  Score=121.03  Aligned_cols=106  Identities=20%  Similarity=0.333  Sum_probs=68.1

Q ss_pred             ceEEEEEEecCCcEEEEeecCC---CCCeecCCC------CCHHHHHHHHHHHHhCCCcce--eeeeccceEEecCCchh
Q 028086           68 RNVGICLINSSKKIFAASRLDI---PDSWQMPQN------EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG------Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~~p~~~  136 (214)
                      .+|++++++.+|+|||++|.+.   ++.|++|||      |++++||+||++||||+....  .++.    + +.++.  
T Consensus        44 ~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~----~-~~~~~--  116 (207)
T 1mk1_A           44 GAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVD----L-DTAPG--  116 (207)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEE----E-CSCTT--
T ss_pred             CEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEE----E-EcCCC--
Confidence            4677778888999999998654   368999999      799999999999999998422  2221    1 22221  


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                                 +..+..++|++..........    ..++.|+.++.|++++++.+++.
T Consensus       117 -----------~~~~~~~~f~~~~~~~~~~~~----~~~~~E~~~~~Wv~~~el~~~~~  160 (207)
T 1mk1_A          117 -----------FSDESVRVYLATGLREVGRPE----AHHEEADMTMGWYPIAEAARRVL  160 (207)
T ss_dssp             -----------TBCCCEEEEEEEEEEECCC--------------CEEEEEHHHHHHHHH
T ss_pred             -----------ccccEEEEEEEEccccCCCCC----CCCCCceEEEEEEEHHHHHHHHH
Confidence                       123345667766543211110    01345889999999999998876

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.54  E-value=1.1e-14  Score=117.96  Aligned_cols=107  Identities=21%  Similarity=0.201  Sum_probs=70.4

Q ss_pred             ceEEEEEEec-CCcEEEEeecC---------CCCCeecCCC----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEec
Q 028086           68 RNVGICLINS-SKKIFAASRLD---------IPDSWQMPQN----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYD  131 (214)
Q Consensus        68 ~~v~vvI~~~-~g~vLL~rR~~---------~~g~W~lPgG----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~  131 (214)
                      .+|++++++. +++|||+++.+         .++.|++|||    |++.+||+||++||||++..  ..++..     +.
T Consensus        46 ~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~vegE~~~~aa~REl~EEtG~~~~~~~~l~~~-----~~  120 (191)
T 3o6z_A           46 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFEL-----YM  120 (191)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECCSSCHHHHHHHHHHHHC-CCCSCEEEEEEE-----ES
T ss_pred             CEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeCCCCHHHHHHHHHHHHhCCccCcEEEEEEE-----Ee
Confidence            5677777875 58999998764         4578999999    99999999999999999852  223221     11


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      .+ +            ......++|++...... .....  ...++|+.++.|++++++.+++.
T Consensus       121 ~~-~------------~~~~~~~~f~~~~~~~~-~~~~~--~~~~~E~~~~~w~~~~el~~~~~  168 (191)
T 3o6z_A          121 SP-G------------GVTELIHFFIAEYSDNQ-RANAG--GGVEDEAIEVLELPFSQALEMIK  168 (191)
T ss_dssp             CT-T------------TBCCEEEEEEEECCTTC-C----------CCSSEEEEEEHHHHHHHHH
T ss_pred             CC-C------------ccCcEEEEEEEEEcccc-cccCC--CCCCCcEEEEEEEEHHHHHHHHH
Confidence            11 1            23455677777754321 11100  01145888999999999998765

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.54  E-value=1.9e-14  Score=118.20  Aligned_cols=107  Identities=15%  Similarity=0.104  Sum_probs=69.6

Q ss_pred             ceEEEEEEe-cCCcEEEEeecCC--------CCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeeccceEEec
Q 028086           68 RNVGICLIN-SSKKIFAASRLDI--------PDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYD  131 (214)
Q Consensus        68 ~~v~vvI~~-~~g~vLL~rR~~~--------~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~  131 (214)
                      .+|++++++ .+|+|||+++.+.        ++.|++|||     |++++||+||++||||+....  .++.    + +.
T Consensus        58 ~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~----~-~~  132 (209)
T 1g0s_A           58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLS----F-LA  132 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEE----E-ES
T ss_pred             CEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEE----E-ec
Confidence            467777788 5789999876543        257999999     999999999999999998532  2222    1 22


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCc-ceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKE-EEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~-~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      .|.             +.....++|++...... .....   ..++.|..++.|++++++.+++.
T Consensus       133 ~~g-------------~~~~~~~~f~a~~~~~~~~~~~~---~~~e~E~~~~~w~~~~el~~~i~  181 (209)
T 1g0s_A          133 SPG-------------GTSERSSIMVGEVDATTASGIHG---LADENEDIRVHVVSREQAYQWVE  181 (209)
T ss_dssp             CTT-------------TBCCEEEEEEEECCGGGCC-----------CCSCEEEEEEHHHHHHHHH
T ss_pred             CCC-------------ccCcEEEEEEEEEccccccCCCC---CCCCCcEEEEEEEEHHHHHHHHH
Confidence            221             22445677777653211 01000   01345788999999999998766

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.53  E-value=1.2e-14  Score=118.41  Aligned_cols=104  Identities=18%  Similarity=0.196  Sum_probs=69.9

Q ss_pred             ceEEEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhh
Q 028086           68 RNVGICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~  137 (214)
                      .+|++++++++ +|||++|.+.   ++.|++|||     |++++||+||++||||+...  ..++.      +...++  
T Consensus        50 ~av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~------~~~~~~--  120 (198)
T 1vhz_A           50 EAVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKK------LSMAPS--  120 (198)
T ss_dssp             CEEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEE------EECCTT--
T ss_pred             CEEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEE------EeCCCC--
Confidence            35666667766 9999987643   268999999     99999999999999999842  22222      111111  


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                                +.....++|++...... ...     .+++|..++.|++++++.+++..
T Consensus       121 ----------~~~~~~~~f~a~~~~~~-~~~-----~~~~E~~~~~w~~~~el~~~~~~  163 (198)
T 1vhz_A          121 ----------YFSSKMNIVVAQDLYPE-SLE-----GDEPEPLPQVRWPLAHMMDLLED  163 (198)
T ss_dssp             ----------TCCCEEEEEEEEEEEEC-CCC-----CCCSSCCCEEEEEGGGGGGGGGC
T ss_pred             ----------ccCcEEEEEEEEeCCcc-cCC-----CCCCceEEEEEEEHHHHHHHHHc
Confidence                      12445566766643221 111     13457889999999999988763

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.52  E-value=3.8e-14  Score=125.35  Aligned_cols=126  Identities=20%  Similarity=0.293  Sum_probs=76.0

Q ss_pred             CCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccccCCCccC
Q 028086           78 SKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKG  150 (214)
Q Consensus        78 ~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~  150 (214)
                      +.+|||++|.. .|.|.+|||     ||+++||+||++||||++.  ..+++.    +.|.++.... +..+...+....
T Consensus        37 ~~~vLLv~r~~-~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~----~~~~~~~~g~-~~~~~~~~~~~~  110 (364)
T 3fjy_A           37 SIEVCIVHRPK-YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCE----VEYPLSEEGK-KTRHSHDCTADT  110 (364)
T ss_dssp             TEEEEEEEETT-TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEE----EC---------------------
T ss_pred             ceEEEEEEcCC-CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccce----EEEeccCCCc-ccccccccccCc
Confidence            34899999966 489999999     9999999999999999983  233322    2233322100 000000011124


Q ss_pred             ceEEEEEEEEeCCcceeec----cCC-CCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086          151 QAQKWFLLKFTGKEEEINL----LGD-KSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF  209 (214)
Q Consensus       151 ~~~~~fl~~~~~~~~~i~l----~~~-~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~  209 (214)
                      ...++|++...++...+.+    .+. ..+++|+.+++|++++++.+++. +..+.+++.+++.+
T Consensus       111 ~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~~~~l  175 (364)
T 3fjy_A          111 KHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFVDRV  175 (364)
T ss_dssp             -CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchhhHHHHHHHHHHh
Confidence            5667888877654211110    000 12456899999999999998877 66677888887765

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.51  E-value=7.8e-14  Score=116.94  Aligned_cols=112  Identities=23%  Similarity=0.378  Sum_probs=72.4

Q ss_pred             CCccceEEEEEEecCCcEEEEeecCC----CCCeecCC-C-----------CC---HHHHHHHHHHHHhCCCccee----
Q 028086           64 EGYRRNVGICLINSSKKIFAASRLDI----PDSWQMPQ-N-----------ED---PKVAALRELKEETGVSSAEV----  120 (214)
Q Consensus        64 ~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPg-G-----------Es---~~eAA~REl~EETGl~~~~~----  120 (214)
                      ..++++|+++|+|.+|+|||++|+..    ||.|.+|+ |           |+   +.+||+||++|||||....+    
T Consensus        56 g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~  135 (235)
T 2dho_A           56 GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEE  135 (235)
T ss_dssp             TCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGG
T ss_pred             CceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhh
Confidence            34678899999999999999999753    58999995 5           23   59999999999999984211    


Q ss_pred             eeeccceEEecCCchhhhhhccccCCCcc-CceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          121 LAEVPYWLTYDFPPEVREKLKHQWGGDWK-GQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       121 l~~~~~~~~~~~p~~~~~~l~~~~~~~~~-~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                      +... ..+.|.++..          +.+. +...++|++...+   ++.+     +++|+.+++|++++++.+++
T Consensus       136 l~~l-~~~~y~~~~~----------~~~~~~e~~~vf~~~~~~---~~~~-----~~~Ev~~~~wv~~~el~~~l  191 (235)
T 2dho_A          136 INYL-TRIHYKAQSD----------GIWGEHEIDYILLVRMNV---TLNP-----DPNEIKSYCYVSKEELKELL  191 (235)
T ss_dssp             SEEE-EEEEEEEECS----------SSBEEEEEEEEEEEECCC---CCCC-----CTTTEEEEEEECHHHHHHHH
T ss_pred             cEEE-EEEEEeccCC----------CccceeEEEEEEEEEECC---CCcC-----ChHHEEEEEEEcHHHHHHHH
Confidence            1111 1222322211          0111 2233455555422   2333     34699999999999998753

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.51  E-value=9.8e-14  Score=113.91  Aligned_cols=111  Identities=23%  Similarity=0.269  Sum_probs=69.1

Q ss_pred             ceEEEEEEecC----CcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCch
Q 028086           68 RNVGICLINSS----KKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPE  135 (214)
Q Consensus        68 ~~v~vvI~~~~----g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~  135 (214)
                      .+|+++.+..+    ++|||+++.+.   ++.|++|||     |++++||+||++||||+... ....... + +..|  
T Consensus        62 ~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~-~~~~l~~-~-~~~~--  136 (212)
T 2dsc_A           62 DGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGD-IAECSPA-V-CMDP--  136 (212)
T ss_dssp             SEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCE-EEEECCC-E-ESCT--
T ss_pred             CEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCcc-ceEEecc-E-EcCC--
Confidence            45665544322    47999886443   358999999     99999999999999999842 2111111 1 1111  


Q ss_pred             hhhhhccccCCCccCceEEEEEEEEeCCcce-eeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEE-INLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~-i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                                 .+.+...++|++.+...... .... ...+++|+.++.|++++++.+++.
T Consensus       137 -----------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~E~~~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          137 -----------GLSNCTIHIVTVTINGDDAENARPK-PKPGDGEFVEVISLPKNDLLQRLD  185 (212)
T ss_dssp             -----------TTBCCEEEEEEEEEETTSGGGSSCC-CCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred             -----------CccCceEEEEEEEEeCccccccCCC-CCCCCCceEEEEEEEHHHHHHHHH
Confidence                       12344567777765432111 0000 012456899999999999988766

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.50  E-value=1.6e-13  Score=115.88  Aligned_cols=112  Identities=19%  Similarity=0.283  Sum_probs=72.3

Q ss_pred             CCccceEEEEEEecCCcEEEEeecCC----CCCeecCC-C-----------CCH---HHHHHHHHHHHhCCCccee----
Q 028086           64 EGYRRNVGICLINSSKKIFAASRLDI----PDSWQMPQ-N-----------EDP---KVAALRELKEETGVSSAEV----  120 (214)
Q Consensus        64 ~~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lPg-G-----------Es~---~eAA~REl~EETGl~~~~~----  120 (214)
                      ..++++|+++|+|.+|+|||++|+..    ||.|.+|+ |           |++   .+||+||++|||||....+    
T Consensus        67 g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~  146 (246)
T 2pny_A           67 GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPED  146 (246)
T ss_dssp             TCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGG
T ss_pred             CcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccc
Confidence            34678889999999999999999753    68999995 4           354   8999999999999984211    


Q ss_pred             eeeccceEEecCCchhhhhhccccCCCcc-CceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          121 LAEVPYWLTYDFPPEVREKLKHQWGGDWK-GQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       121 l~~~~~~~~~~~p~~~~~~l~~~~~~~~~-~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                      +... ..+.|.++..          +.+. +...++|++...+   ++.+     +++|+.+++|++++++.+++
T Consensus       147 l~~l-~~~~y~~~~~----------~~~~~~e~~~vf~~~~~~---~~~~-----~~~Ev~~~~wv~~eel~~~l  202 (246)
T 2pny_A          147 IVFM-TIYHHKAKSD----------RIWGEHEICYLLLVRKNV---TLNP-----DPSETKSILYLSQEELWELL  202 (246)
T ss_dssp             SEEE-EEEEEEEESS----------SSBEEEEEEEEEEEECCC---CCCC-----CTTTEEEEEEECHHHHHHHH
T ss_pred             cEEE-EEEEEEecCC----------CceeeeEEEEEEEEEECC---CCCC-----ChHHeeEEEEEeHHHHHHHH
Confidence            1111 1222332211          0111 2233455555321   2333     34699999999999998753

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.48  E-value=6.5e-14  Score=116.25  Aligned_cols=112  Identities=19%  Similarity=0.121  Sum_probs=70.7

Q ss_pred             cceEEEEEEec-CCcEEEEeecCC----------------------------------CCCeecCCC------CCHHHHH
Q 028086           67 RRNVGICLINS-SKKIFAASRLDI----------------------------------PDSWQMPQN------EDPKVAA  105 (214)
Q Consensus        67 ~~~v~vvI~~~-~g~vLL~rR~~~----------------------------------~g~W~lPgG------Es~~eAA  105 (214)
                      +.+|++++++. +++|||+++.+.                                  ++.|++|||      ||+++||
T Consensus        36 ~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA  115 (218)
T 3q91_A           36 HDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVA  115 (218)
T ss_dssp             CCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHHH
T ss_pred             CCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHHH
Confidence            46788888884 578999986531                                  368999998      8999999


Q ss_pred             HHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEE
Q 028086          106 LRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWK  183 (214)
Q Consensus       106 ~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~  183 (214)
                      +||++||||+..  ..+.. ...   +....            .+.+...++|++...... .+.......+++|+.++.
T Consensus       116 ~REl~EEtGl~~~~~~l~~-l~~---~~~~~------------g~~~~~~~~f~a~~~~~~-~~~~~~~~~d~~E~~ev~  178 (218)
T 3q91_A          116 CKEAWEECGYHLAPSDLRR-VAT---YWSGV------------GLTGSRQTMFYTEVTDAQ-RSGPGGGLVEEGELIEVV  178 (218)
T ss_dssp             HHHHHHHHCBCCCGGGCEE-EEE---EEEC---------------CCEEEEEEEEEECGGG-BCC---------CCEEEE
T ss_pred             HHHHHHHhCCccccCceEE-EEE---EecCC------------CccceEEEEEEEEECCcc-cccCCCCCCCCCcEEEEE
Confidence            999999999985  33211 111   11111            123456677887765321 110000112456899999


Q ss_pred             EeChhHHhhcCc
Q 028086          184 WMSPEQILERAV  195 (214)
Q Consensus       184 Wv~~~el~~~~~  195 (214)
                      |++++++.+++.
T Consensus       179 wv~l~el~~~i~  190 (218)
T 3q91_A          179 HLPLEGAQAFAD  190 (218)
T ss_dssp             EEEGGGHHHHHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999998765

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.45  E-value=2.2e-13  Score=121.03  Aligned_cols=113  Identities=13%  Similarity=0.142  Sum_probs=77.0

Q ss_pred             cceEEEEEEecCCcEEEEeecCC---CCCeecCCC--C--CHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI---PDSWQMPQN--E--DPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG--E--s~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~  137 (214)
                      +..++++|+|.+|+|||++|.+.   +|.|+||||  |  ++++|+.||++||||++.  .+.++    .+.+.|+..  
T Consensus       240 ~~~~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~gt~~~al~REl~EE~Gl~v~~~~~l~----~~~h~~~h~--  313 (369)
T 3fsp_A          240 VPLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIV----SFEHAFSHL--  313 (369)
T ss_dssp             EEEEEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSSCTHHHHHHHHTTSSSCCEEECCCCC----EEEEECSSE--
T ss_pred             EEEEEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCCCcHHHHHHHHHHHhCCceeeecccc----cEEEEcceE--
Confidence            44556677778999999999764   489999999  4  789999999999999984  22222    223333211  


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF  209 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~  209 (214)
                                  ....++|.+...++            ..|+.+++|++++++.++.. +..+.+++.+.+..
T Consensus       314 ------------~~~~~~~~~~~~~~------------~~e~~~~~Wv~~~el~~~~l~~~~~~il~~l~~~~  362 (369)
T 3fsp_A          314 ------------VWQLTVFPGRLVHG------------GPVEEPYRLAPEDELKAYAFPVSHQRVWREYKEWA  362 (369)
T ss_dssp             ------------EEEEEEEEEEECCS------------SCCCTTEEEEEGGGGGGSCCCHHHHHHHHHHHHHT
T ss_pred             ------------EEEEEEEEEEEcCC------------CCCccccEEeeHHHhhhCCCCHHHHHHHHHHHHHh
Confidence                        12334555555431            13777899999999998766 44566777666543

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.45  E-value=5.3e-13  Score=114.00  Aligned_cols=108  Identities=21%  Similarity=0.271  Sum_probs=68.8

Q ss_pred             CCccceEEEEEEe--c---CCcEEEEeecCC--CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEE
Q 028086           64 EGYRRNVGICLIN--S---SKKIFAASRLDI--PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLT  129 (214)
Q Consensus        64 ~~~~~~v~vvI~~--~---~g~vLL~rR~~~--~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~  129 (214)
                      ...+.+|+++|+.  .   +++|||++|.+.  +|.|.+|||     |++++||+||++||||++.  ..+.    ...+
T Consensus        36 ~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~----~l~~  111 (273)
T 2fml_A           36 EKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIE----QLHS  111 (273)
T ss_dssp             CCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEE----EEEE
T ss_pred             CCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEE----EEEE
Confidence            3446677777764  2   348999999865  389999999     9999999999999999762  2221    1123


Q ss_pred             ecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086          130 YDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER  193 (214)
Q Consensus       130 ~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~  193 (214)
                      |..+...         +. .....++|++...+.  ..      ...+|..+++|++++++.+.
T Consensus       112 ~~~~~r~---------~~-~~~~~~~y~a~~~~~--~~------~~~~E~~~~~W~~~~e~~~~  157 (273)
T 2fml_A          112 FSRPDRD---------PR-GWVVTVSYLAFIGEE--PL------IAGDDAKEVHWFNLERHGQH  157 (273)
T ss_dssp             ECCTTSS---------TT-SSEEEEEEEEECCCC--CC------CCCTTEEEEEEEEEEEETTE
T ss_pred             EcCCCCC---------CC-ceEEEEEEEEEeCCC--CC------CCCcceeeEEEEEhhHhhhh
Confidence            3322210         00 122445666655432  11      13458899999999986543

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.41  E-value=1.2e-13  Score=113.74  Aligned_cols=104  Identities=15%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             EEEecCCcEEEEeecCCCCCeecCCC-----C-CHHHHHHHHHHHHhCCCccee--e-eeccceEEecCCchhhhhhccc
Q 028086           73 CLINSSKKIFAASRLDIPDSWQMPQN-----E-DPKVAALRELKEETGVSSAEV--L-AEVPYWLTYDFPPEVREKLKHQ  143 (214)
Q Consensus        73 vI~~~~g~vLL~rR~~~~g~W~lPgG-----E-s~~eAA~REl~EETGl~~~~~--l-~~~~~~~~~~~p~~~~~~l~~~  143 (214)
                      ++++.+++|||++|.  +|.|++|||     | |+++||+||++||||+.....  . ......+.+.++          
T Consensus        50 ~i~~~~~~vLl~~r~--~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~----------  117 (212)
T 1u20_A           50 DRVPIRRVLLMMMRF--DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP----------  117 (212)
T ss_dssp             TTEECCEEEEEEEET--TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT----------
T ss_pred             EEEecCCEEEEEEeC--CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC----------
Confidence            345667889999984  589999999     8 999999999999999984211  0 000111222332          


Q ss_pred             cCCCccCceEEEEEEEEeCCcceee-cc--CCCCCcCceeeEEEeChhHHhhc
Q 028086          144 WGGDWKGQAQKWFLLKFTGKEEEIN-LL--GDKSEKPEFGEWKWMSPEQILER  193 (214)
Q Consensus       144 ~~~~~~~~~~~~fl~~~~~~~~~i~-l~--~~~~~~~E~~~~~Wv~~~el~~~  193 (214)
                           .....++|++....+..... ..  ....++.|+.++.|++++++.+.
T Consensus       118 -----~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~  165 (212)
T 1u20_A          118 -----QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  165 (212)
T ss_dssp             -----SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             -----CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence                 13345677776543211110 00  00123458889999999999653

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.36  E-value=2.2e-12  Score=111.81  Aligned_cols=115  Identities=12%  Similarity=0.097  Sum_probs=75.1

Q ss_pred             CCccceEEEEEEecCC---cEEEEeecCC----CCCe-ecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceE
Q 028086           64 EGYRRNVGICLINSSK---KIFAASRLDI----PDSW-QMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWL  128 (214)
Q Consensus        64 ~~~~~~v~vvI~~~~g---~vLL~rR~~~----~g~W-~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~  128 (214)
                      ...+++|.+.+++.++   ++|++||+..    ||.| ..++|     |++.+||+||++||+||...  +.+.. ...+
T Consensus       115 G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~-~g~i  193 (300)
T 3dup_A          115 GVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIP-VGAI  193 (300)
T ss_dssp             TCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEE-EEEE
T ss_pred             ceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccc-cceE
Confidence            4457889999988877   9999999765    6999 47787     99999999999999999841  11111 1223


Q ss_pred             EecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          129 TYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       129 ~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      +|.++...          ++.....++|.+.+.. +..+.     .+++|+.+++|++++|+.+++.
T Consensus       194 ~y~~~~~~----------G~~~E~~~vy~~~l~~-~~~p~-----~~~~EV~~~~~v~~~El~~~l~  244 (300)
T 3dup_A          194 TYCMESPA----------GIKPDTLFLYDLALPE-DFRPH-----NTDGEMADFMLWPAAKVVEAVR  244 (300)
T ss_dssp             EEEEEETT----------EEEEEEEEEEEEECCT-TCCCC-----CTTSSEEEEEEEEHHHHHHHHH
T ss_pred             EEEEecCC----------CeEEEEEEEEEEEecC-CCcCC-----CCchHhheEEEECHHHHHHHHh
Confidence            34332110          1122333444444432 11222     2467999999999999987654

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.32  E-value=7.9e-12  Score=107.86  Aligned_cols=117  Identities=21%  Similarity=0.191  Sum_probs=69.8

Q ss_pred             cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc-c----------eeeeecc--ceEEe----cCCchhh
Q 028086           80 KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS-A----------EVLAEVP--YWLTY----DFPPEVR  137 (214)
Q Consensus        80 ~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~-~----------~~l~~~~--~~~~~----~~p~~~~  137 (214)
                      +|||++|.. .|.|.+|||     |++.+||+||++||||+.. .          .+.....  ....|    .+|... 
T Consensus       140 ~vLl~~r~~-~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~-  217 (292)
T 1q33_A          140 QFVAIKRKD-CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNT-  217 (292)
T ss_dssp             EEEEEECTT-TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCC-
T ss_pred             EEEEEEecC-CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCCC-
Confidence            599999977 489999999     9999999999999999972 0          1110000  11111    111110 


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcc--eeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhccc
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEE--EINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPH  212 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~--~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~~~  212 (214)
                               .-.......|.+....+..  ...+    ...+|+.+++|++++++.++ .+..+.+++++++....+
T Consensus       218 ---------d~~~~~~~~f~~~~~~g~~~~~~~~----~~~~E~~~~~W~~~del~~L-~~~h~~il~~~~~~~~a~  280 (292)
T 1q33_A          218 ---------DNAWMETEAVNYHDETGEIMDNLML----EAGDDAGKVKWVDINDKLKL-YASHSQFIKLVAEKRDAH  280 (292)
T ss_dssp             ---------SSEEEEEEEEEEEESSSTTTTTCCC----CCCTTCSEEEEEECCTTCCC-STTHHHHHHHHHHHHTCC
T ss_pred             ---------cccEEEEEEEEEEeCCCcccccccc----CCCCccceEEEEEcccCccc-CHhHHHHHHHHHHHhcCc
Confidence                     0001123344444322210  0111    13458899999999999864 456678888888775443

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.25  E-value=3.7e-11  Score=100.56  Aligned_cols=52  Identities=27%  Similarity=0.412  Sum_probs=42.9

Q ss_pred             CccceEEEEEEecC--C--cEEEEeecCC----CCCeecCCC-----CC--------------------HHHHHHHHHHH
Q 028086           65 GYRRNVGICLINSS--K--KIFAASRLDI----PDSWQMPQN-----ED--------------------PKVAALRELKE  111 (214)
Q Consensus        65 ~~~~~v~vvI~~~~--g--~vLL~rR~~~----~g~W~lPgG-----Es--------------------~~eAA~REl~E  111 (214)
                      .+|++++++++++.  |  +|||++|...    +|.|.||||     |+                    +.+||+||++|
T Consensus         6 ~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~E   85 (232)
T 3qsj_A            6 DIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAE   85 (232)
T ss_dssp             CEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHH
Confidence            45888888877643  3  8999999765    589999999     44                    58999999999


Q ss_pred             HhCCC
Q 028086          112 ETGVS  116 (214)
Q Consensus       112 ETGl~  116 (214)
                      ||||.
T Consensus        86 E~Gl~   90 (232)
T 3qsj_A           86 EIGWL   90 (232)
T ss_dssp             HHSCC
T ss_pred             HhCce
Confidence            99997

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.17  E-value=8.6e-11  Score=102.72  Aligned_cols=103  Identities=11%  Similarity=0.178  Sum_probs=68.6

Q ss_pred             cceEEEEEEecCCcEEEEeecCCCCCeecCCC---CCHHHHHHHHHHHHh-CCCc--ceeeeeccceEEecCCchhhhhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDIPDSWQMPQN---EDPKVAALRELKEET-GVSS--AEVLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG---Es~~eAA~REl~EET-Gl~~--~~~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      +..|+++| +.+|+|||+  .+ .| |.+|||   |+..++|+||++||| |+++  ..+++.      |+.+.      
T Consensus       183 ~~~vgaii-~~~g~vLL~--~~-~G-W~LPG~~~~~~~~~~a~RE~~EEttGl~v~~~~L~~v------~~~~~------  245 (321)
T 3rh7_A          183 EIRLGAVL-EQQGAVFLA--GN-ET-LSLPNCTVEGGDPARTLAAYLEQLTGLNVTIGFLYSV------YEDKS------  245 (321)
T ss_dssp             CEEEEEEE-ESSSCEEEB--CS-SE-EBCCEEEESSSCHHHHHHHHHHHHHSSCEEEEEEEEE------EECTT------
T ss_pred             cceEEEEE-EECCEEEEe--eC-CC-ccCCcccCCCChhHHHHHHHHHHhcCCEEeeceEEEE------EEcCC------
Confidence            34456555 457899999  32 47 999988   777789999999997 9984  222221      22221      


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc--cCCHHHHHHHHHh
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV--DFKKPVYKEVFTV  208 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~--~~~~~~~~~~l~~  208 (214)
                              .++...+|+++..++.              ..+++|+++++++.+..  +..+.+++..++.
T Consensus       246 --------~~~~~i~f~~~~~~g~--------------~~e~~~f~~~elp~~~~~~~~~~~~L~~y~~e  293 (321)
T 3rh7_A          246 --------DGRQNIVYHALASDGA--------------PRQGRFLRPAELAAAKFSSSATADIINRFVLE  293 (321)
T ss_dssp             --------TCCEEEEEEEEECSSC--------------CSSSEEECHHHHTTCEESSHHHHHHHHHHHHT
T ss_pred             --------CceEEEEEEEEeCCCC--------------eeeeEEECHHHCCCcccCCHHHHHHHHHHHHH
Confidence                    2344567777775431              24689999999987643  5566777766654

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.09  E-value=6e-11  Score=98.18  Aligned_cols=96  Identities=16%  Similarity=0.115  Sum_probs=57.6

Q ss_pred             cEEEEeecCCCCCeecCCC-----C-CHHHHHHHHHHHHhCCCcce-eeeeccceEEecCCchhhhhhccccCCCccCce
Q 028086           80 KIFAASRLDIPDSWQMPQN-----E-DPKVAALRELKEETGVSSAE-VLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQA  152 (214)
Q Consensus        80 ~vLL~rR~~~~g~W~lPgG-----E-s~~eAA~REl~EETGl~~~~-~l~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~  152 (214)
                      ++||+.|.  ++.|++|||     | |+++||+||++||||+.... .+........+  +.            ......
T Consensus        66 ~~ll~~r~--~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~--~~------------~~~~~~  129 (217)
T 2xsq_A           66 AILMQMRF--DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSH--VG------------SGPRVV  129 (217)
T ss_dssp             EEEEEEET--TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEE--EC------------SSSSEE
T ss_pred             cEEEEEcc--CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeec--CC------------CCCeEE
Confidence            56776665  489999999     8 99999999999999998431 11111111111  11            011335


Q ss_pred             EEEEEEEEeCCcce-eecc--CCCCCcCceeeEEEeChhHHh
Q 028086          153 QKWFLLKFTGKEEE-INLL--GDKSEKPEFGEWKWMSPEQIL  191 (214)
Q Consensus       153 ~~~fl~~~~~~~~~-i~l~--~~~~~~~E~~~~~Wv~~~el~  191 (214)
                      .++|++.+..+... +...  ....+.+|..++.|+|++++.
T Consensus       130 ~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          130 AHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             EEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             EEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhh
Confidence            56677766532110 0000  001134588999999999986

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.59  E-value=8.7e-08  Score=78.28  Aligned_cols=50  Identities=22%  Similarity=0.302  Sum_probs=40.0

Q ss_pred             CccceEEEEE-EecCC--cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCC
Q 028086           65 GYRRNVGICL-INSSK--KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVS  116 (214)
Q Consensus        65 ~~~~~v~vvI-~~~~g--~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~  116 (214)
                      +.|+.|.++| +++++  +|||+|+..  +.|.+|||     |+.++|+.||+.||+|+.
T Consensus        56 g~R~sV~avil~~~~~~phVLLlq~~~--~~f~LPGGkle~gE~~~eaL~REL~EELg~~  113 (208)
T 3bho_A           56 GMRRTVEGVLIVHEHRLPHVLLLQLGT--TFFKLPGGELNPGEDEVEGLKRLMTEILGRQ  113 (208)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEEEEET--TEEECSEEECCTTCCHHHHHHHHHHHHHCCC
T ss_pred             CCceEEEEEEEEcCCCCcEEEEEEcCC--CcEECCCcccCCCCCHHHHHHHHHHHHhCCC
Confidence            3466665555 45555  799999853  79999999     999999999999999953

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.45  E-value=8.1e-08  Score=77.94  Aligned_cols=106  Identities=12%  Similarity=0.051  Sum_probs=62.0

Q ss_pred             CCccceEEEEEEecC-----C------cEEEEeecCCCCCeecCCC-----C-CHHHHHHHHHHHHhCCC-c--ceeeee
Q 028086           64 EGYRRNVGICLINSS-----K------KIFAASRLDIPDSWQMPQN-----E-DPKVAALRELKEETGVS-S--AEVLAE  123 (214)
Q Consensus        64 ~~~~~~v~vvI~~~~-----g------~vLL~rR~~~~g~W~lPgG-----E-s~~eAA~REl~EETGl~-~--~~~l~~  123 (214)
                      .++|.++.+++.-++     |      .|||+.|.+  |.|+||||     | |+++|+.||+.||+|+. +  .+.+. 
T Consensus        18 ~~~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R~~--G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~-   94 (214)
T 3kvh_A           18 PGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFD--GLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLS-   94 (214)
T ss_dssp             TTCEEEEEEEEEEEEEEEETTTEEEEEEEEEEEETT--SCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEE-
T ss_pred             cCccEeeEEEEEcCCccccccccchhheEEEeeeeC--CEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEE-
Confidence            467888888776443     2      367777775  89999999     7 99999999999999973 2  22221 


Q ss_pred             ccceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcce----eeccCCCCCcCceeeEEEeChhHHh
Q 028086          124 VPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEE----INLLGDKSEKPEFGEWKWMSPEQIL  191 (214)
Q Consensus       124 ~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~----i~l~~~~~~~~E~~~~~Wv~~~el~  191 (214)
                         ...++||.               ....++|.++...++..    ..+. ..+-.-|+....-||+=.+.
T Consensus        95 ---s~~~~yp~---------------~V~LHfY~crl~~Ge~~~lE~~A~~-A~d~G~EvlGlvRVPlytl~  147 (214)
T 3kvh_A           95 ---SHLTEGPH---------------RVVAHLYARQLTLEQLHAVEISAVH-SRDHGLEVLGLVRVPLYTQK  147 (214)
T ss_dssp             ---EEEC-------------------CEEEEEEEEECCHHHHHHHHHHHHT-STTBTTTEEEEEEECCCBCT
T ss_pred             ---EEeccCCC---------------EEEEEEEEEEeeCCccchhhhcccC-CcccCceecceEEeeeEEec
Confidence               22334431               22457777776533211    0111 01234577788888875544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	6e-47
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	8e-10
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	9e-10
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	2e-09
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	3e-08
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	1e-06
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	1e-06
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	1e-06
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	2e-06
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	3e-06
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	6e-05
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	1e-04
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	2e-04
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	4e-04
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	4e-04
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	0.001
d1qtwa_	285	c.1.15.1 (A:) Endonuclease IV {Escherichia coli [T	0.003

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score =  150 bits (379), Expect = 6e-47
 Identities = 123/161 (76%), Positives = 143/161 (88%), Gaps = 5/161 (3%)

Query: 58  SMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEE 112
           SMD+PPEGYRRNVGICL+N+ KKIFAASRLDIPD+WQMPQ      EDP+ AA+REL+EE
Sbjct: 5   SMDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREE 64

Query: 113 TGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGD 172
           TGV+SAEV+AEVPYWLTYDFPP+VREKL  QWG DWKGQAQKWFL KFTG+++EINLLGD
Sbjct: 65  TGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGD 124

Query: 173 KSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPHL 213
            SEKPEFGEW W++PEQ+++  V+FKKPVYKEV +VF PHL
Sbjct: 125 GSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPHL 165

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 8e-10
 Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 26/154 (16%)

Query: 66  YRRNVGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEETGVSSAEV 120
           +RR +   + N++ +       D    W  P+      ED    ALR  +EE G      
Sbjct: 16  FRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAG------ 69

Query: 121 LAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFG 180
                             K +  +    K +   ++L +    + EI L        E  
Sbjct: 70  ------IEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRL------SHEHQ 117

Query: 181 EWKWMSPEQILERAVDFKKPVYKEVFTVFTPHLQ 214
            ++W+  E+  + A   +    K         L 
Sbjct: 118 AYRWLGLEEACQLA---QFKEMKAALQEGHQFLC 148

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 9e-10
 Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 31/151 (20%)

Query: 63  PEGYRRNVGICLINSSKKIFA--ASRLDIPDSWQMP-----QNEDPKVAALRELKEETGV 115
            +GY++        S  +      S    PD W +P       E+P VAA+RE+ EE GV
Sbjct: 7   GDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 66

Query: 116 SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSE 175
                                  +L   +    +      ++L  T   E+     +   
Sbjct: 67  KGTLG------------------RLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVN--- 105

Query: 176 KPEFGEWKWMSPEQILERAVDFKKPVYKEVF 206
                + +W   E  ++  + + KPV    F
Sbjct: 106 --IGRKREWFKIEDAIKV-LQYHKPVQASYF 133

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (125), Expect = 2e-09
 Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 28/149 (18%)

Query: 59  MDAPPEGYRR--------NVGICLINSSKKIFAASRLDIP--DSWQMPQ-----NEDPKV 103
           M    E +          ++   + NS  +     R + P    W +P      +E  + 
Sbjct: 2   MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEA 61

Query: 104 AALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGK 163
           A  R    E G+       +      + +                          +F   
Sbjct: 62  AFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTH--------YVVLGFRFRVS 113

Query: 164 EEEINLLGDKSEKPEFGEWKWMSPEQILE 192
           EEE+ L  +     +  +++W++ + +L 
Sbjct: 114 EEELLLPDE-----QHDDYRWLTSDALLA 137

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 30/153 (19%), Positives = 47/153 (30%), Gaps = 31/153 (20%)

Query: 67  RRNVGICLINSSKKIFAASRLDIPDS------WQMP-----QNEDPKVAALRELKEETGV 115
            R  G+ L+N    I       IP        W +P       E+P+ AA+RE  EETG+
Sbjct: 12  LRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 71

Query: 116 SSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSE 175
               V  +        FP  V                   +L +    +       D   
Sbjct: 72  RVRPV--KFLGAYLGRFPDGVLILR-------------HVWLAEPEPGQTLAPAFTD--- 113

Query: 176 KPEFGEWKWMSPEQILERAVDFKKPVYKEVFTV 208
             E  E  ++S E   +     +  +Y+     
Sbjct: 114 --EIAEASFVSREDFAQLYAAGQIRMYQTKLFY 144

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 26/143 (18%)

Query: 71  GICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEETGVSSAEVLAEVP 125
            I L  S ++            W  P+     +E     A+RE+ EETG           
Sbjct: 7   AIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD--------- 57

Query: 126 YWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWM 185
                      R           +GQ  + +++     +           + E  + +W 
Sbjct: 58  --------CSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFE----SRTRKEISKIEWH 105

Query: 186 SPEQILERAVDFKKPVYKEVFTV 208
           +   +     +  + +  + + V
Sbjct: 106 NLMDLPTFKKNKPQTMKNKFYMV 128

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 33/162 (20%)

Query: 43  LPLVHHQNQICSSSYSMDAPPEGYR-RNVGICLINSSKKIFAASRLDIPDSW-------- 93
           L LV+ ++++       D      R R V   L NS  +++   R      +        
Sbjct: 3   LDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSV 62

Query: 94  --QMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQ 151
              +   E  + A  RE +EE  V                   +            ++  
Sbjct: 63  GGAVQSGETYEEAFRREAREELNV-----------------EIDALSWRPLASFSPFQTT 105

Query: 152 AQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER 193
              +  +     +       +     +    +W++PE +L R
Sbjct: 106 LSSFMCVYELRSDATPIFNPN-----DISGGEWLTPEHLLAR 142

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 35/167 (20%)

Query: 43  LPLVHHQNQICSSSYSMDAPPEGYR-RNVGICLINSSKKIFAASRLDIPDSWQM------ 95
           + +V+ +N++ + +       +  R R   I + +   KI    R +  D          
Sbjct: 5   VDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATA 64

Query: 96  ----PQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQ 151
                 +E    +A RE +EE G++             + F  +        +     G 
Sbjct: 65  GGVVQADEQLLESARREAEEELGIA----GVPFAEHGQFYFEDKNCRVWGALFSCVSHG- 119

Query: 152 AQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK 198
                            L     ++ E  E  W++PE+I  R  +F 
Sbjct: 120 --------------PFAL-----QEDEVSEVCWLTPEEITARCDEFT 147

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 10/120 (8%)

Query: 90  PDSWQMP-----QNEDPKVAALRELKEETGVS--SAEVLAEVPYWLTYDFPPEVREKLKH 142
              W +P       E       RE  EE   S               +    +    +  
Sbjct: 149 CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYK 208

Query: 143 QWGGDWKGQAQKWFL---LKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKK 199
            +  D +     W     + +  +  EI          + G+ KW+     L+      +
Sbjct: 209 GYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQ 268

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 31/129 (24%)

Query: 70  VGICLINSSKKIFAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVLAEV 124
            G  + N+ +++           W  P       E  + AA+RE+ EETGV        +
Sbjct: 5   AGGVVFNAKREVLLLRD--RMGFWVFPKGHPEPGESLEEAAVREVWEETGV---RAEVLL 59

Query: 125 PYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKW 184
           P + T    P+  E+  H            WFL++  G             +       W
Sbjct: 60  PLYPTRYVNPKGVEREVH------------WFLMRGEGAPR---------LEEGMTGAGW 98

Query: 185 MSPEQILER 193
            SPE+    
Sbjct: 99  FSPEEARAL 107

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.5 bits (91), Expect = 6e-05
 Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 27/145 (18%)

Query: 75  INSSKKIFAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVLAEVPYWLT 129
           +    +         P  W  P       ED   AA+RE KEE  ++  ++        T
Sbjct: 13  LAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHET 72

Query: 130 YDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQ 189
                         +    K ++ K++L K    ++            E   WKW   E 
Sbjct: 73  ------------LFYEAKGKPKSVKYWLAKLNNPDDVQ-------LSHEHQNWKWCELED 113

Query: 190 ILERAVDFKKPVYKEVFTVFTPHLQ 214
            ++ A          +   F+  L 
Sbjct: 114 AIKIA---DYAEMGSLLRKFSAFLA 135

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 17/128 (13%)

Query: 70  VGICLINSSKKIFAASRLDIPDSWQMPQ-----NEDPKVAALRELKEETGVSSAEVLAEV 124
           V   ++  + K+           +  P      NE P  A  RE +EETG+   E +   
Sbjct: 3   VTSGVLVENGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGI-VVEPIGFT 60

Query: 125 PYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKW 184
              +  +        +  +    +  +    F L +  K              +    +W
Sbjct: 61  YGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVG----------GDLKNGEW 110

Query: 185 MSPEQILE 192
           +   +I  
Sbjct: 111 IDVREIDR 118

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 15/136 (11%), Positives = 35/136 (25%), Gaps = 28/136 (20%)

Query: 68  RNVGICLINSSKKIFAASRLDIPDSW----------QMPQNEDPKVAALRELKEETGVSS 117
                 L N+  ++    R     +W               E  + A +R  + E GV  
Sbjct: 3   LAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEI 62

Query: 118 AEVLAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKP 177
               +  P +             +++          +   +        + +  D     
Sbjct: 63  TPPESIYPDF-------------RYRATDPSGIVENEVCPVFAARTTSALQINDD----- 104

Query: 178 EFGEWKWMSPEQILER 193
           E  +++W     +L  
Sbjct: 105 EVMDYQWCDLADVLHG 120

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 24/132 (18%)

Query: 67  RRNVGICLINSSKKIFAASRLDIPDSWQMP-----QNEDPKVAALRELKEETGVSSAEVL 121
           R    I +           +     ++ +P       E  + A  RE+ EE G+S     
Sbjct: 17  RYAAYIIVSKPENNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIG- 74

Query: 122 AEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGE 181
                     +  E  E                +++     +  E               
Sbjct: 75  ---------CYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPL--------ERTNT 117

Query: 182 WKWMSPEQILER 193
             W++PE+ +  
Sbjct: 118 LHWVAPEEAVRL 129

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 30/132 (22%)

Query: 68  RNVGICLINSSKKIFAASRLDIPDS--WQMP-----QNEDPKVAALRELKEETGVSSAEV 120
           R   + L+   +++    +     +  W        + E  +  A REL+EE+G++   +
Sbjct: 5   RLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDAL 64

Query: 121 LAEVPYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFG 180
                  + ++F  E      H +  D              G   E           +  
Sbjct: 65  --HKVGQIVFEFVGEPELMDVHVFCTDS-----------IQGTPVE----------SDEM 101

Query: 181 EWKWMSPEQILE 192
              W   +QI  
Sbjct: 102 RPCWFQLDQIPF 113

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 18/141 (12%), Positives = 32/141 (22%), Gaps = 27/141 (19%)

Query: 73  CLINSSKKIFAASRLDIP--DSWQMP-----QNEDPKVAALRELKEETGVSSAEVLAEVP 125
            +I    K      +          P       E    A  RE+ EETG S   +   + 
Sbjct: 8   AVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHS--FLPEVLT 65

Query: 126 YWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWM 185
               +         L+  + G                                     W 
Sbjct: 66  GIYHWTCASNGTTYLRFTFSGQVVSFDPDRK------------------LDTGIVRAAWF 107

Query: 186 SPEQILERAVDFKKPVYKEVF 206
           S ++I  +    + P+  +  
Sbjct: 108 SIDEIRAKQAMHRTPLVMQCI 128

>d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]} Length = 285

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Endonuclease IV
domain: Endonuclease IV
species: Escherichia coli [TaxId: 562]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 81  IFAASRLDIPDSWQMPQNEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFP-PEVREK 139
           +F  +       W+        +   +   E+   +SA++L    Y +    P  E  EK
Sbjct: 31  LFTKN----QRQWRAAPLTTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEK 86

Query: 140 LKHQWGGDWK 149
            +  +  + +
Sbjct: 87  SRDAFIDEMQ 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	100.0
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.85
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.8
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.78
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.78
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.77
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.77
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.77
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.76
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.75
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.74
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.74
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.74
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.73
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.72
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.71
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.71
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.7
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.67
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.61
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.59
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.56
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.54
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.51
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.45
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.4
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.33
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.2
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.2
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.09

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=100.00  E-value=1.4e-32  Score=217.23  Aligned_cols=159  Identities=77%  Similarity=1.395  Sum_probs=127.6

Q ss_pred             cccccCCCCCCccceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEE
Q 028086           55 SSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLT  129 (214)
Q Consensus        55 ~~~~~~~~~~~~~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~  129 (214)
                      +..||..+|.+||++|+++|+|++|+|||++|.+.+|.|++|||     ||+++||+||++||||++...........+.
T Consensus         2 ~~~~~~~~~~~yR~~Vg~vI~n~~~~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~   81 (165)
T d1jkna_           2 PLGSMDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLT   81 (165)
T ss_dssp             CCCCCSSCCSSEEEEEEEEEECTTSCEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEE
T ss_pred             CCCccCCCCCCccccEEEEEEeCCCEEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhcccccccccccccccc
Confidence            34689999999999999999999999999999987899999999     9999999999999999985332222222333


Q ss_pred             ecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhh
Q 028086          130 YDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVF  209 (214)
Q Consensus       130 ~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~  209 (214)
                      +.++..........+.+.+..+..++|.+.+.+.+.++++........|+++++|++++++.+.+.+|++.+|++++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~i~~fk~~v~~~~l~~f  161 (165)
T d1jkna_          82 YDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVF  161 (165)
T ss_dssp             EECCHHHHHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHHSCGGGHHHHHHHHHHT
T ss_pred             ccccceeeceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHhcchhhHHHHHHHHHHH
Confidence            33444443333445566666777888899998776677665444566799999999999999999999999999999999


Q ss_pred             cccc
Q 028086          210 TPHL  213 (214)
Q Consensus       210 ~~~~  213 (214)
                      +|||
T Consensus       162 ~p~~  165 (165)
T d1jkna_         162 APHL  165 (165)
T ss_dssp             GGGC
T ss_pred             HhhC
Confidence            9997

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=2.9e-21  Score=145.13  Aligned_cols=117  Identities=24%  Similarity=0.367  Sum_probs=84.5

Q ss_pred             cceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhc
Q 028086           67 RRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLK  141 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~  141 (214)
                      +.+|+++|+|++++|||++|..  |.|.+|||     ||+.+||+||++||||++.. .+... ....|.++..      
T Consensus         2 ~v~agavv~~~~~~vLl~~~~~--g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~-~~~~~-~~~~~~~~~~------   71 (126)
T d1vcda1           2 ELGAGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGVRAE-VLLPL-YPTRYVNPKG------   71 (126)
T ss_dssp             EEEEEEEEECTTSCEEEEECTT--SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEE-EEEEE-EEEEEECTTS------
T ss_pred             EEEEEEEEEECCCEEEEEEcCC--CCEECCccccCCCCCHHHHHHHHHHHHcCCeeE-EEEEE-eeeeeccCCC------
Confidence            4689999999999999998764  89999999     99999999999999999842 21111 1122333222      


Q ss_pred             cccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086          142 HQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF  209 (214)
Q Consensus       142 ~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~  209 (214)
                             .....++|++...+.   +..      .+|+.+++|++++++.+++. |..+.+++.+++.+
T Consensus        72 -------~~~~~~~~~~~~~~~---~~~------~~e~~~~~W~~~~e~~~~~~~~~~~~il~~~~~~l  124 (126)
T d1vcda1          72 -------VEREVHWFLMRGEGA---PRL------EEGMTGAGWFSPEEARALLAFPEDLGLLEVALERL  124 (126)
T ss_dssp             -------CEEEEEEEEEEEESC---CCC------CTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHHS
T ss_pred             -------eEEEEEEEEEEEcCC---CCC------CccceEEEEEEHHHHhhccCChHHHHHHHHHHHhC
Confidence                   133456777776542   222      24788999999999998765 67778888877654

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.80  E-value=2.1e-19  Score=135.30  Aligned_cols=122  Identities=20%  Similarity=0.373  Sum_probs=79.1

Q ss_pred             ceEEEEEEec-CC--cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecCCchhh
Q 028086           68 RNVGICLINS-SK--KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        68 ~~v~vvI~~~-~g--~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~p~~~~  137 (214)
                      ++++++|++. ++  ++||++|+..+|.|.+|||     ||+.+||+||++||||++..  ..+......  +.+...  
T Consensus         3 raag~vv~~~~~~~~~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~--~~~~~~--   78 (137)
T d1ktga_           3 KAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHET--LFYEAK--   78 (137)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEE--EEEEET--
T ss_pred             EEEEEEEEEEcCCCEEEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeee--eecCCC--
Confidence            5677777643 23  6899999877799999999     99999999999999999842  222221111  111111  


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT  210 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~  210 (214)
                                .......+|++...+. .++.+      .+|+.+++|++++++.++.. +..+.+++++.+.++
T Consensus        79 ----------~~~~~~~~~~~~~~~~-~~~~~------~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~L~  135 (137)
T d1ktga_          79 ----------GKPKSVKYWLAKLNNP-DDVQL------SHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLA  135 (137)
T ss_dssp             ----------TEEEEEEEEEEEECSC-CCCCC------CTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             ----------cceEEEEEEEEEecCC-CCcCC------CcceEEEEEEEHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence                      1233445566565432 23333      24899999999999988765 444555555555443

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.78  E-value=5e-19  Score=136.75  Aligned_cols=107  Identities=25%  Similarity=0.349  Sum_probs=75.5

Q ss_pred             cceEEEEEEecCCcEEEEeecCC------CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCC
Q 028086           67 RRNVGICLINSSKKIFAASRLDI------PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFP  133 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~------~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p  133 (214)
                      .++|+++++|.+|+|||++|...      +|.|.+|||     ||+.+||+||++||||++.  .++++    .+.+.++
T Consensus        12 ~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~----~~~~~~~   87 (158)
T d1sjya_          12 LRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLG----AYLGRFP   87 (158)
T ss_dssp             EEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEE----EEEEECT
T ss_pred             eeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEE----EEEEECC
Confidence            56788888999999999998754      378999999     9999999999999999984  22222    2233444


Q ss_pred             chhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          134 PEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      ++.             ....++|++....+.. ...    ...+|+.+++|++++++.++..
T Consensus        88 ~~~-------------~~~~~~~~~~~~~~~~-~~~----~~~~E~~~~~w~~~~el~~l~~  131 (158)
T d1sjya_          88 DGV-------------LILRHVWLAEPEPGQT-LAP----AFTDEIAEASFVSREDFAQLYA  131 (158)
T ss_dssp             TSC-------------EEEEEEEEEEECSSCC-CCC----CCCSSEEEEEEECHHHHHHHHH
T ss_pred             CCC-------------EEEEEEEEEEEcCCcc-cCC----CCCcceEEEEEEEHHHHhhhhh
Confidence            331             2234556666554321 111    1345999999999999988755

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=6.1e-19  Score=133.35  Aligned_cols=115  Identities=13%  Similarity=0.203  Sum_probs=78.1

Q ss_pred             cceEEEEEEecCCcEEEEeecCC-CCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeeccceEEecCCchhhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDI-PDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~-~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~~p~~~~~  138 (214)
                      .++|.++|. +++++||++|.+. +|.|.+|||     ||+++||+||++||||++...  .++.    ..+..      
T Consensus         3 ~paViv~i~-~~~~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~----~~~~~------   71 (131)
T d1vk6a2           3 APCIIVAIR-RDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTS----QPWPF------   71 (131)
T ss_dssp             EEEEEEEEE-ETTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEE----EEEET------
T ss_pred             ccEEEEEEE-eCCEEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEE----eccCc------
Confidence            467765555 4678999988764 489999999     999999999999999998422  2211    11111      


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCC--HHHHHHHHHhh
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFK--KPVYKEVFTVF  209 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~--~~~~~~~l~~~  209 (214)
                                .+...++|++....+  ++.+     ++.|+.+++|++++++..+..+..  +.++++.+..+
T Consensus        72 ----------~~~~~~~f~~~~~~~--~~~~-----~~~E~~~~~W~~~~el~~l~~~~~i~r~li~~~l~~~  127 (131)
T d1vk6a2          72 ----------PQSLMTAFMAEYDSG--DIVI-----DPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMC  127 (131)
T ss_dssp             ----------TEEEEEEEEEEEEEC--CCCC-----CTTTEEEEEEEETTSCCSCCCTTSHHHHHHHHHHHHH
T ss_pred             ----------CceEEEEEEEEEcCC--cccC-----CCccEEEEEEEcHHHHhhCCCChHHHHHHHHHHHHHH
Confidence                      133456677766543  3333     346899999999999987655433  55666666544

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.2e-18  Score=134.18  Aligned_cols=125  Identities=22%  Similarity=0.326  Sum_probs=86.9

Q ss_pred             ccceEEEEEE---------ecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEE
Q 028086           66 YRRNVGICLI---------NSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLT  129 (214)
Q Consensus        66 ~~~~v~vvI~---------~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~  129 (214)
                      ..+++|++++         +.++++||+++.+..+.|.+|||     ||+.+||+||++||||+...  .++........
T Consensus         7 ~~~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~   86 (153)
T d1xsba_           7 ALRACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELN   86 (153)
T ss_dssp             SEEEEEEEEEEECSSCSSSSTTEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEEEE
T ss_pred             chheeEEEEEeccccccccCCCCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceeeec
Confidence            3577888887         45679999999886688999999     99999999999999999842  33332222222


Q ss_pred             ecCCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086          130 YDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV  208 (214)
Q Consensus       130 ~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~  208 (214)
                      +...              .......+|.+........+.+      .+|+.+++|++++++.+++. +..+.+++++.+.
T Consensus        87 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~------~~E~~~~~W~~~~e~~~~~~~~~~~~iL~~~~~~  146 (153)
T d1xsba_          87 YVAR--------------NKPKTVIYWLAEVKDYDVEIRL------SHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQF  146 (153)
T ss_dssp             EESS--------------SCEEEEEEEEEEESCTTCCCCC------CTTEEEEEEECHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred             cccc--------------CceeEEEEEEEEEeecccccCC------CcceeEEEEEEHHHHHHhcCCHHHHHHHHHHHHH
Confidence            2211              1233445566666544333333      35899999999999999876 5667777777665


Q ss_pred             hc
Q 028086          209 FT  210 (214)
Q Consensus       209 ~~  210 (214)
                      +.
T Consensus       147 L~  148 (153)
T d1xsba_         147 LC  148 (153)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.4e-18  Score=133.39  Aligned_cols=51  Identities=22%  Similarity=0.280  Sum_probs=45.7

Q ss_pred             cceEEEEEEecCCcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc
Q 028086           67 RRNVGICLINSSKKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS  117 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~  117 (214)
                      ..+|+++|+|.+|+|||++|.+.+  |.|.+|||     ||+.+||+||++||||++.
T Consensus        18 ~~~v~~vi~~~~~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~   75 (160)
T d1ryaa_          18 LVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL   75 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCC
T ss_pred             EEEEEEEEEeCCCeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceE
Confidence            457788888999999999998754  89999999     9999999999999999983

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.77  E-value=1.1e-18  Score=133.04  Aligned_cols=107  Identities=16%  Similarity=0.114  Sum_probs=68.6

Q ss_pred             ceEEEEEEecCCcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhh
Q 028086           68 RNVGICLINSSKKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRE  138 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~  138 (214)
                      .+|+++ ++.+|+|||++|.+.+  |.|.+|||     ||+.+||+||++||||++.  ...++.    +.+.++...  
T Consensus         4 v~va~i-i~~~~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~----~~~~~~~~~--   76 (146)
T d2b0va1           4 VTVAAV-IEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGI----YHWTCASNG--   76 (146)
T ss_dssp             EEEEEE-CEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEE----EEEEETTTT--
T ss_pred             EEEEEE-EEeCCEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEE----EEEecCCCC--
Confidence            344444 4567999999998764  68999999     9999999999999999983  222221    122222110  


Q ss_pred             hhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC
Q 028086          139 KLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF  197 (214)
Q Consensus       139 ~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~  197 (214)
                                .....++|.+.........      ..++|+.+++|++++++.......
T Consensus        77 ----------~~~~~~~~~~~~~~~~~~~------~~~~E~~~~~W~~~~el~~~~~~~  119 (146)
T d2b0va1          77 ----------TTYLRFTFSGQVVSFDPDR------KLDTGIVRAAWFSIDEIRAKQAMH  119 (146)
T ss_dssp             ----------EEEEEEEEEEEEEEECTTS------CCCTTEEEEEEEEHHHHHHTGGGB
T ss_pred             ----------eEEEEEEEEEEeecCCCCC------CCCcceeEEEEeeHHHHhhCcccc
Confidence                      1122344444443322111      234689999999999998766543

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.1e-17  Score=130.41  Aligned_cols=115  Identities=21%  Similarity=0.258  Sum_probs=77.2

Q ss_pred             ccceEEEEEEecCCcEEEEeecCC----CCCeecC-CC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCch
Q 028086           66 YRRNVGICLINSSKKIFAASRLDI----PDSWQMP-QN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPE  135 (214)
Q Consensus        66 ~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-gG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~  135 (214)
                      .+++|.++|+|.+|+|||++|+..    ||.|.+| ||     ||+++||+||++|||||+...+...  ..+.+.  +.
T Consensus        29 ~h~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~--~~~~~~--~~  104 (161)
T d2fkba1          29 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEH--GQFYFE--DK  104 (161)
T ss_dssp             CEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEE--EEEEEE--ET
T ss_pred             cEeEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEE--EEEEee--cC
Confidence            467899999999999999999653    6999887 77     9999999999999999984332111  111221  11


Q ss_pred             hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHH
Q 028086          136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKE  204 (214)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~  204 (214)
                      .            .....++|.+...   .++.+     +++|+.+++|++++++.++...+....+..
T Consensus       105 ~------------~~~~~~~~~~~~~---~~~~~-----~~~Ev~~~~w~~~~el~~~~~~~~P~~~~a  153 (161)
T d2fkba1         105 N------------CRVWGALFSCVSH---GPFAL-----QEDEVSEVCWLTPEEITARCDEFTPDSLKA  153 (161)
T ss_dssp             T------------EEEEEEEEEEECC---CCCCC-----CTTTEEEEEEECHHHHHTTGGGBCHHHHHH
T ss_pred             C------------cEEEEEEEEEEEC---CCCcC-----ChhHeeEEEEEeHHHHhhhhhccCCcHHHH
Confidence            1            1122333443322   23333     346999999999999988776666544433

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.75  E-value=1.4e-18  Score=134.02  Aligned_cols=105  Identities=15%  Similarity=0.316  Sum_probs=65.6

Q ss_pred             eEEEEEEecC-CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhcc
Q 028086           69 NVGICLINSS-KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKH  142 (214)
Q Consensus        69 ~v~vvI~~~~-g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~  142 (214)
                      .+||+|+|.+ ++|||++|...++.|.+|||     ||+.+||+||++||||++...... ....+....          
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~-~~~~~~~~~----------   72 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRIN-PNEFIDMTI----------   72 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCC-TTCEEEEEE----------
T ss_pred             EEEEEEEECCCCEEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeee-cceEEeecc----------
Confidence            5688889876 68999999766689999999     999999999999999998422111 111111110          


Q ss_pred             ccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          143 QWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       143 ~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                            .+...++|++.....+.....    .+..|+++++|++++++..+.
T Consensus        73 ------~~~~~~~~~~~~~~~~~~~~~----~~~~Ei~~~~W~~~~el~~~~  114 (151)
T d2a6ta2          73 ------RGQNVRLYIIPGISLDTRFES----RTRKEISKIEWHNLMDLPTFK  114 (151)
T ss_dssp             ------TTEEEEEEEECCCCTTCCCC----------EEEEEEEEGGGSTTCC
T ss_pred             ------cCceEEEEEEEEeccCCcccc----cCCCccceEEEEEHHHhhhhh
Confidence                  122233444332222222111    234699999999999987653

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.1e-18  Score=133.89  Aligned_cols=108  Identities=17%  Similarity=0.270  Sum_probs=71.0

Q ss_pred             cceEEEEEEecCCcEEEEeecCC----CCCeec-CCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCc
Q 028086           67 RRNVGICLINSSKKIFAASRLDI----PDSWQM-PQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPP  134 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~----~g~W~l-PgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~  134 (214)
                      +++|+|+|+|++|+|||++|+..    ||.|.+ |||     ||+.+||+||++|||||+.  .+.+.. ...+...++.
T Consensus         2 Hra~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~-~~~y~~~~~~   80 (153)
T d1hzta_           2 HLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYP-DFRYRATDPS   80 (153)
T ss_dssp             EECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEET-TCEEEEECTT
T ss_pred             ceEEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceec-cccccccccc
Confidence            56899999999999999999743    689987 888     9999999999999999984  222221 1111222222


Q ss_pred             hhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcC
Q 028086          135 EVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERA  194 (214)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~  194 (214)
                      +.           ......++|.....   .++.++     ++|+++++|++++++.+.+
T Consensus        81 ~~-----------~~~~~~~~~~~~~~---~~~~~~-----~~Ev~~~~W~~~~el~~~i  121 (153)
T d1hzta_          81 GI-----------VENEVCPVFAARTT---SALQIN-----DDEVMDYQWCDLADVLHGI  121 (153)
T ss_dssp             SC-----------EEEEECCEEEEEBC---SCCCCC-----TTTEEEEEEECHHHHHHHH
T ss_pred             cc-----------cceeEEEEEEEeeC---CCccCC-----hhheeEEEEeeHHHHHHHH
Confidence            11           00111122333322   234442     4599999999999997653

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.4e-18  Score=130.30  Aligned_cols=110  Identities=25%  Similarity=0.323  Sum_probs=72.5

Q ss_pred             EEEEEecCCcEEEEeecCC---CCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhhhcc
Q 028086           71 GICLINSSKKIFAASRLDI---PDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREKLKH  142 (214)
Q Consensus        71 ~vvI~~~~g~vLL~rR~~~---~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~l~~  142 (214)
                      +++|++++|+|||++|...   +|.|++|||     ||+.+||+||++||||++.... . ....+.+.++..       
T Consensus         8 v~ii~~~~~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~-~-~~~~~~~~~~~~-------   78 (129)
T d1puna_           8 VGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF-S-LFEKLEYEFPDR-------   78 (129)
T ss_dssp             EEECBCTTSCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCC-C-CSEEEEEECSSE-------
T ss_pred             EEEEEECCCEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccc-e-eeeEEeeccccc-------
Confidence            3456688899999998654   489999999     9999999999999999984221 1 112223333211       


Q ss_pred             ccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHH
Q 028086          143 QWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEV  205 (214)
Q Consensus       143 ~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~  205 (214)
                             +...++|.+...  +.++..       .|+.+++|++++++.++.. +..+++++.+
T Consensus        79 -------~~~~~~~~~~~~--~~~~~~-------~E~~~~~W~~~~el~~~~~~~~~~~ii~~L  126 (129)
T d1puna_          79 -------HITLWFWLVERW--EGEPWG-------KEGQPGEWMSLVGLNADDFPPANEPVIAKL  126 (129)
T ss_dssp             -------EEEEEEEECCCC--SSCCCT-------TSSSCCEEECGGGCCTTTSCGGGHHHHHHH
T ss_pred             -------ceeEEEEEEeec--cCcCCC-------CccceEEEEEHHHcccCCCCcchHHHHHHH
Confidence                   122334433321  112222       3788999999999987765 5567777754

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.74  E-value=4.1e-18  Score=130.04  Aligned_cols=122  Identities=14%  Similarity=0.142  Sum_probs=76.8

Q ss_pred             cceEEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREK  139 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~  139 (214)
                      |++|+++|+|.++++||+.+.. .|.|.+|||     ||+.+||+||++||||++.  ...++.... ..+. +...   
T Consensus        17 r~~~~~vi~~~~~~~lll~~~~-~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~-~~~~-~~~~---   90 (147)
T d2azwa1          17 RYAAYIIVSKPENNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADE-YFYS-NHRQ---   90 (147)
T ss_dssp             CCEEEEECEEGGGTEEEEEECT-TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEE-EEEE-TTTT---
T ss_pred             CCeEEEEEEECCCCEEEEEEcC-CCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEE-Eeee-ccCC---
Confidence            6788888888877666665554 389999999     9999999999999999983  233332211 1111 1110   


Q ss_pred             hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhh
Q 028086          140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVF  209 (214)
Q Consensus       140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~  209 (214)
                             .+.....++|.+.....  ...      ..+|+.+++|++++++.+++. +..+.++++.+...
T Consensus        91 -------~~~~~~~~~~~~~~~~~--~~~------~~~e~~~~~W~~~~e~~~~l~~~~~r~~l~~~la~~  146 (147)
T d2azwa1          91 -------TAYYNPGYFYVANTWRQ--LSE------PLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWLAAA  146 (147)
T ss_dssp             -------EEEEEEEEEEEEEEEEE--CSS------CC-CCSEEEEECHHHHHHHBSCHHHHHHHHHHHHCC
T ss_pred             -------ceEEEEEEEEEEEeccc--cCC------CCccceEEEEEEHHHHHHHcCChhHHHHHHHHHhcc
Confidence                   01112233444433221  111      234788999999999988765 55677777777643

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.3e-18  Score=128.53  Aligned_cols=120  Identities=23%  Similarity=0.344  Sum_probs=74.7

Q ss_pred             CCCccceEEEEEEecC--CcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCch
Q 028086           63 PEGYRRNVGICLINSS--KKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPE  135 (214)
Q Consensus        63 ~~~~~~~v~vvI~~~~--g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~  135 (214)
                      ..+||..+++++++.+  +.+||+++.+.+|.|.+|||     ||+.+||+||++||||++.. .... ...+.+..+  
T Consensus         7 ~~~~r~~a~~vv~~~~~~~~~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~-~~~~-~~~~~~~~~--   82 (135)
T d2fvva1           7 GDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGT-LGRL-VGIFENQER--   82 (135)
T ss_dssp             TTSCEEEEEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEE-EEEE-EEEEEETTT--
T ss_pred             CCCCceEEEEEEEEecCCCEEEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcce-eeEE-EEEEeeccC--
Confidence            3578899998888644  45777777777899999999     99999999999999999832 1111 111111111  


Q ss_pred             hhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHH
Q 028086          136 VREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVF  206 (214)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l  206 (214)
                                    ....++|.+...........     ..+|+.+++|++++++.+++. +++++.++++
T Consensus        83 --------------~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~W~~~~e~~~~l~-~~~p~~~~~l  133 (135)
T d2fvva1          83 --------------KHRTYVYVLIVTEVLEDWED-----SVNIGRKREWFKIEDAIKVLQ-YHKPVQASYF  133 (135)
T ss_dssp             --------------TEEEEEEEEEEEEECSSCHH-----HHHHCCCEEEEEHHHHHHHHT-TTCHHHHHHT
T ss_pred             --------------CccEEEEEEEEEeecCCCCC-----CCCceeEEEEEEHHHHHHHHh-cCCHHHHHHh
Confidence                          11122222222111111111     134788999999999998764 4456655544

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.72  E-value=3e-18  Score=132.21  Aligned_cols=123  Identities=13%  Similarity=0.144  Sum_probs=78.9

Q ss_pred             CccceEEEEEE--ecC-CcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC
Q 028086           65 GYRRNVGICLI--NSS-KKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF  132 (214)
Q Consensus        65 ~~~~~v~vvI~--~~~-g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~  132 (214)
                      .++.+|.++|+  +++ .+|||++|...|  |.|.+|||     ||+++||+||++||||++..  +.++.      ++.
T Consensus         8 ~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~------~~~   81 (147)
T d2fb1a2           8 TFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGA------FGA   81 (147)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEE------ECC
T ss_pred             CcceEEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeE------ecC
Confidence            44667777765  322 379999997764  89999999     99999999999999999842  22221      222


Q ss_pred             CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhcc
Q 028086          133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTP  211 (214)
Q Consensus       133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~~  211 (214)
                      +...         .+ ......+|++..........       .+|..+++|+++++++++..+ .+.+++.+++.+..
T Consensus        82 ~~~~---------~~-~~~v~~~~~~~~~~~~~~~~-------~~e~~~~~W~~~~~lp~lafD-H~~ii~~a~~~lr~  142 (147)
T d2fb1a2          82 IDRD---------PG-ERVVSIAYYALININEYDRE-------LVQKHNAYWVNINELPALIFD-HPEMVDKAREMMKQ  142 (147)
T ss_dssp             TTSS---------SS-SCEEEEEEEEECCTTSSCHH-------HHHHTTEEEEETTSCCCBSTT-HHHHHHHHHHHHHH
T ss_pred             Cccc---------CC-CceEEEEEEEEecCCcccCC-------CcchhheEEecHHhchhcccC-HHHHHHHHHHHHHH
Confidence            2110         00 11233445555443322222       237788999999999876553 35678777776654

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-17  Score=128.61  Aligned_cols=116  Identities=14%  Similarity=0.166  Sum_probs=71.9

Q ss_pred             cceEEEEEEecCCcEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhh
Q 028086           67 RRNVGICLINSSKKIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVR  137 (214)
Q Consensus        67 ~~~v~vvI~~~~g~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~  137 (214)
                      |.. +++++..+|+|||++|.+.+  |.|.+|||     ||+.+||+||++||||++.  ...++.    +.+.++..  
T Consensus         5 r~~-~~v~i~~~~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~----~~~~~~~~--   77 (156)
T d1irya_           5 RLY-TLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQ----IVFEFVGE--   77 (156)
T ss_dssp             EEE-EEECEECSSEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEE----EEEEETTC--
T ss_pred             EEE-EEEEEEECCEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEE----EEEEcCCC--
Confidence            444 44555578999999997653  89999999     9999999999999999984  233332    12222221  


Q ss_pred             hhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHh
Q 028086          138 EKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTV  208 (214)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~  208 (214)
                                  ......+++.......++.       ..|..+++|++++++..+.. +..+..+..+++.
T Consensus        78 ------------~~~~~~~~~~~~~~~~~~~-------~~ee~~~~W~~~~~l~~~~~~~~d~~~l~~~l~~  130 (156)
T d1irya_          78 ------------PELMDVHVFCTDSIQGTPV-------ESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQK  130 (156)
T ss_dssp             ------------SCEEEEEEECCCCBCSCCC-------CCSSEEEEEEETTCCCSTTTCSSHHHHHHHHHHT
T ss_pred             ------------CEEEEEEEEEEEeecCccc-------CCchhheEEeEHHHCCcCCCCccHHHHHHHHhCC
Confidence                        1111222222211111111       12445689999999987655 5556677777653

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.71  E-value=1.9e-17  Score=129.09  Aligned_cols=107  Identities=19%  Similarity=0.217  Sum_probs=70.7

Q ss_pred             CccceEEEEEEecCCcEEEEeecCC----CCCeecC-CC-----CCHHHHHHHHHHHHhCCCcc--eeeeeccceEEecC
Q 028086           65 GYRRNVGICLINSSKKIFAASRLDI----PDSWQMP-QN-----EDPKVAALRELKEETGVSSA--EVLAEVPYWLTYDF  132 (214)
Q Consensus        65 ~~~~~v~vvI~~~~g~vLL~rR~~~----~g~W~lP-gG-----Es~~eAA~REl~EETGl~~~--~~l~~~~~~~~~~~  132 (214)
                      ..+++|+++|+|.+|++||++|...    ||.|.+| ||     ||+.+||+||++||||++..  ....    .+.+..
T Consensus        26 ~~~~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~----~~~~~~  101 (162)
T d2o5fa1          26 ERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRP----LASFSP  101 (162)
T ss_dssp             GGSEEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEE----EEEECT
T ss_pred             CeEEEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEE----EEEecc
Confidence            3567899999999999999998643    6999887 67     99999999999999999842  2221    112211


Q ss_pred             CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      ...           . ......+|.+...   ..+.+     +++|+.+++|++++++...+.
T Consensus       102 ~~~-----------~-~~~~~~~~~~~~~---~~~~~-----~~~Ev~~~~W~~~eel~~~~~  144 (162)
T d2o5fa1         102 FQT-----------T-LSSFMCVYELRSD---ATPIF-----NPNDISGGEWLTPEHLLARIA  144 (162)
T ss_dssp             TTS-----------S-CSSEEEEEEEECS---SCCCC-----CTTTCSEEEEECHHHHHHHHH
T ss_pred             ccc-----------c-ceEEEEEEEEecC---CCccC-----ChhHeeEEEEeeHHHHHHHHH
Confidence            110           0 1122233333322   23333     346899999999999988765

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.70  E-value=1.4e-17  Score=126.95  Aligned_cols=123  Identities=16%  Similarity=0.145  Sum_probs=71.5

Q ss_pred             EEEEEEecCCcEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhhcc
Q 028086           70 VGICLINSSKKIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKLKH  142 (214)
Q Consensus        70 v~vvI~~~~g~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l~~  142 (214)
                      ++++|+ .+|+|||++|.+ .|.|.+|||     |++.+||+||++||||++.  ...+...........+.        
T Consensus         4 a~~vi~-~d~kvLl~~r~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~--------   73 (152)
T d1k2ea_           4 TSGVLV-ENGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPM--------   73 (152)
T ss_dssp             EEEECE-ETTEEEEEECTT-TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCC--------
T ss_pred             EEEEEE-ECCEEEEEEEcC-CCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcc--------
Confidence            344444 478999999876 589999999     9999999999999999983  12222111111111110        


Q ss_pred             ccCCCccCceEEEEEEEEeCCcceeeccC---CCCCcCceeeEEEeChhHHhhcCc-cCCHHHHHHHHHhhc
Q 028086          143 QWGGDWKGQAQKWFLLKFTGKEEEINLLG---DKSEKPEFGEWKWMSPEQILERAV-DFKKPVYKEVFTVFT  210 (214)
Q Consensus       143 ~~~~~~~~~~~~~fl~~~~~~~~~i~l~~---~~~~~~E~~~~~Wv~~~el~~~~~-~~~~~~~~~~l~~~~  210 (214)
                             ......+..... ......+..   .....+|+.+++|++++++.++.. +..+.+++.+++.+.
T Consensus        74 -------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  137 (152)
T d1k2ea_          74 -------PLVILEEVVKYP-EETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPNVRKVVSLALSTLY  137 (152)
T ss_dssp             -------CSEEEEEEEECS-SCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHHHH
T ss_pred             -------eEEEEEEEEecC-CCceEEEEEeEeeecCCCCcceEEEeEHHHHhhCCCCHHHHHHHHHHHHHHh
Confidence                   001111111110 000000000   000134888999999999998766 666788877776553

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.67  E-value=1.6e-16  Score=122.76  Aligned_cols=103  Identities=15%  Similarity=0.242  Sum_probs=63.1

Q ss_pred             EEEEe-cCCcEEEEeecCCC---CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhh
Q 028086           72 ICLIN-SSKKIFAASRLDIP---DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        72 vvI~~-~~g~vLL~rR~~~~---g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      ++|++ +++++||++|....   +.|++|||     ||+.+||+||++||||++.  ..+++.    ..+.++..     
T Consensus        13 ~~i~~~~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~----~~~~~~~~-----   83 (155)
T d2b06a1          13 CLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGI----KNWPLDTG-----   83 (155)
T ss_dssp             EEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEE----EEEECTTS-----
T ss_pred             EEEEECCCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEE----EEeecCCC-----
Confidence            33445 45689999886542   67999999     9999999999999999984  233322    12221111     


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccCCHH
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKP  200 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~  200 (214)
                              .....++|.+....  ..+.       ..|..+++|++++++.++.......
T Consensus        84 --------~~~~~~~~~~~~~~--~~~~-------~~e~~~~~W~~~~el~~l~~~~~~~  126 (155)
T d2b06a1          84 --------GRYIVICYKATEFS--GTLQ-------SSEEGEVSWVQKDQIPNLNLAYDML  126 (155)
T ss_dssp             --------CEEEEEEEEECEEE--ECCC-------CBTTBEEEEEEGGGGGGSCBCTTHH
T ss_pred             --------CeEEEEEEEEEecC--CccC-------CCchheEEEEEHHHhccCCCCchhH
Confidence                    11122333332211  1222       2377899999999999877755433

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=1.5e-15  Score=118.31  Aligned_cols=104  Identities=27%  Similarity=0.426  Sum_probs=65.6

Q ss_pred             ceEEEEEEecCCcEEEEeecCCC---CCeecCCC-----CCHHHHHHHHHHHHhCCCcceeeeeccceEEecCCchhhhh
Q 028086           68 RNVGICLINSSKKIFAASRLDIP---DSWQMPQN-----EDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVREK  139 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~~---g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~l~~~~~~~~~~~p~~~~~~  139 (214)
                      .+|++++++ +|+|||+++.+.+   ..|++|||     |++++||+||++||||+.. ++..    ...+...++    
T Consensus        25 ~aV~vl~~~-~~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~-~~~~----l~~~~~~~g----   94 (158)
T d1v8ya_          25 PAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSG-DLTY----LFSYFVSPG----   94 (158)
T ss_dssp             CEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEE-EEEE----EEEEESCTT----
T ss_pred             CEEEEEEEE-CCEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcc-eeee----ecceecCCC----
Confidence            466767665 7899999876543   68999999     9999999999999999963 2211    111211111    


Q ss_pred             hccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          140 LKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       140 l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                              +..+..++|++..... ....+     +++|..++.|++++|+.+++.
T Consensus        95 --------~~~~~~~~f~a~~~~~-~~~~~-----d~~E~~ev~w~~~~e~~~~i~  136 (158)
T d1v8ya_          95 --------FTDEKTHVFLAENLKE-VEAHP-----DEDEAIEVVWMRPEEALERHQ  136 (158)
T ss_dssp             --------TBCCEEEEEEEEEEEE-CC-------------CEEEEECHHHHHHHHH
T ss_pred             --------cceEEEEEEEEccccc-cccCC-----CCCeeEEEEEEEHHHHHHHHH
Confidence                    2345566666654321 11222     345788999999999998765

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.59  E-value=3.5e-15  Score=119.19  Aligned_cols=105  Identities=23%  Similarity=0.277  Sum_probs=70.1

Q ss_pred             ccce-EEEEEEe-cCCcEEEEeecCC----CCCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecC
Q 028086           66 YRRN-VGICLIN-SSKKIFAASRLDI----PDSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDF  132 (214)
Q Consensus        66 ~~~~-v~vvI~~-~~g~vLL~rR~~~----~g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~  132 (214)
                      +|.+ |.+++++ .+.+|||++|+..    +|.|+||||     ||+.+||+||++||||++.  .++++.....++   
T Consensus        30 ~r~aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~---  106 (187)
T d1nqza_          30 YRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFT---  106 (187)
T ss_dssp             CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEE---
T ss_pred             CCccEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceee---
Confidence            4454 4444443 3457999999754    699999999     9999999999999999983  566665543221   


Q ss_pred             CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086          133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER  193 (214)
Q Consensus       133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~  193 (214)
                      +               .+...+.|++.+.........     ..+|+.++.|++++++.+.
T Consensus       107 ~---------------~~~~V~p~v~~l~~~~~~~~~-----~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_         107 P---------------VGFHVTPVLGRIAPEALDTLR-----VTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             T---------------TTEEEEEEEEEECGGGGGGCC-----CCTTEEEEECCBHHHHHHS
T ss_pred             c---------------cccEEEEEEEEECCccccccc-----cCCcceEEEeccHHHHhcC
Confidence            1               133445566666432211111     3458999999999999764

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=1.4e-15  Score=122.95  Aligned_cols=106  Identities=19%  Similarity=0.333  Sum_probs=68.2

Q ss_pred             ceEEEEEEecCCcEEEEeecCCC---CCeecCCC------CCHHHHHHHHHHHHhCCCcce--eeeeccceEEecCCchh
Q 028086           68 RNVGICLINSSKKIFAASRLDIP---DSWQMPQN------EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYDFPPEV  136 (214)
Q Consensus        68 ~~v~vvI~~~~g~vLL~rR~~~~---g~W~lPgG------Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~~p~~~  136 (214)
                      .+|+++.++++|+|||+++.+.+   ..|++|+|      |++++||+||++||||+....  .++.      +. +.. 
T Consensus        39 ~~V~vl~~~~~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~------~~-~~~-  110 (202)
T d1mqea_          39 GAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVD------LD-TAP-  110 (202)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEE------EC-SCT-
T ss_pred             CeEEEEEECCCCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeee------ee-ccC-
Confidence            46777778999999999986544   37999999      899999999999999998432  2221      11 111 


Q ss_pred             hhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          137 REKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                                .+..+..++|++...........    .+++|..++.|++++|+.+++.
T Consensus       111 ----------g~~~~~~~~fla~~~~~~~~~~~----~~eee~i~v~w~~~~e~~~~i~  155 (202)
T d1mqea_         111 ----------GFSDESVRVYLATGLREVGRPEA----HHEEADMTMGWYPIAEAARRVL  155 (202)
T ss_dssp             ----------TTBCCCEEEEEEEEEEECCC--------------CEEEEEHHHHHHHHT
T ss_pred             ----------ccCCcEEEEEEEEeccccCCCCC----CCccceEEEEEEEHHHHHHHHH
Confidence                      23455667777664322111111    1234566799999999998876

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.54  E-value=1e-14  Score=117.68  Aligned_cols=105  Identities=23%  Similarity=0.329  Sum_probs=66.1

Q ss_pred             cceEEEEEE--ecC-C--cEEEEeecCCC--CCeecCCC-----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecC
Q 028086           67 RRNVGICLI--NSS-K--KIFAASRLDIP--DSWQMPQN-----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDF  132 (214)
Q Consensus        67 ~~~v~vvI~--~~~-g--~vLL~rR~~~~--g~W~lPgG-----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~  132 (214)
                      ..+|.++|+  +.+ |  +|||++|.+.|  |.|.+|||     ||+.+||+||++||||++.  ..+.    ....+..
T Consensus        37 ~v~vd~vi~~~~~~~~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~----~~~~~~~  112 (202)
T d2fmla2          37 SLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIE----QLHSFSR  112 (202)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEE----EEEEECC
T ss_pred             ccEEEEEEEEEecCCCeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceee----eeeeccc
Confidence            445555554  433 3  79999998765  89999999     9999999999999999983  2221    1122333


Q ss_pred             CchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhc
Q 028086          133 PPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILER  193 (214)
Q Consensus       133 p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~  193 (214)
                      +...          ........+|++...++  .+.      ..+|+.+++|++++++...
T Consensus       113 ~~r~----------~~~~~i~~~~~~~~~~~--~~~------~~~e~~~~~Wf~ld~l~~~  155 (202)
T d2fmla2         113 PDRD----------PRGWVVTVSYLAFIGEE--PLI------AGDDAKEVHWFNLERHGQH  155 (202)
T ss_dssp             TTSS----------TTSSEEEEEEEEECCCC--CCC------CCTTEEEEEEEEEEEETTE
T ss_pred             CCcc----------ccceEEEEEEEEEeCCC--CcC------CCcceeeEEEEeHHHCcch
Confidence            2211          00122334444443321  222      2358999999999998753

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.51  E-value=8.5e-15  Score=109.55  Aligned_cols=109  Identities=14%  Similarity=0.188  Sum_probs=66.8

Q ss_pred             EEEEEEecCCcEEEEeecCC---CCCeecCCC----CCHHHHHHHHHHHHhCCCc--ceeeeeccceEEecCCchhhhhh
Q 028086           70 VGICLINSSKKIFAASRLDI---PDSWQMPQN----EDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVREKL  140 (214)
Q Consensus        70 v~vvI~~~~g~vLL~rR~~~---~g~W~lPgG----Es~~eAA~REl~EETGl~~--~~~l~~~~~~~~~~~p~~~~~~l  140 (214)
                      ++++|+|++|+||+.+|...   +|.|+||||    ++..+++.||++||+|++.  .+.++.    +.+.|..      
T Consensus         7 ~~~vi~~~~g~iLl~kR~~~~~~~GlWefP~g~~e~~~~~e~l~rel~ee~gi~v~~~~~l~~----~~H~fsh------   76 (127)
T d1rrqa2           7 AVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIVS----FEHAFSH------   76 (127)
T ss_dssp             EEEEEEESSSEEEEEECCSSSTTTTCEECCEEECTTTCCHHHHHHTTC----CEEEECSCCEE----EEEECSS------
T ss_pred             EEEEEEECCCEEEEEECCCCCCCCCceecccccccCCCCHHHHHHHhhhhcceEEEecccccc----ceEecCC------
Confidence            45566799999999999765   389999999    4558999999999999973  222222    2222211      


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc-CCHHHHHHHHHh
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD-FKKPVYKEVFTV  208 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~~~~~~l~~  208 (214)
                             + .-..++|.++...+            .++..+++|++++++.++..| ..+++++.+.+.
T Consensus        77 -------~-~~~~~~~~~~~~~~------------~~~~~~~~Wv~~~el~~~~~p~~~~Ki~~~~~~~  125 (127)
T d1rrqa2          77 -------L-VWQLTVFPGRLVHG------------GPVEEPYRLAPEDELKAYAFPVSHQRVWREYKEW  125 (127)
T ss_dssp             -------E-EEEEEEEEEEEECC------------SCCCTTEEEEEGGGGGGSCCCHHHHHHHHHHHHH
T ss_pred             -------e-EEEEEEEEEEECCC------------CccccceEEeeHHHHhHCCCChHHHHHHHHHHHh
Confidence                   0 11223444443321            114457899999999988775 356677666554

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=7.1e-14  Score=111.34  Aligned_cols=97  Identities=16%  Similarity=0.161  Sum_probs=64.6

Q ss_pred             ecCCcEEEEeecCCC---CCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeeeccceEEecCCchhhhhhccccC
Q 028086           76 NSSKKIFAASRLDIP---DSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYDFPPEVREKLKHQWG  145 (214)
Q Consensus        76 ~~~g~vLL~rR~~~~---g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~~p~~~~~~l~~~~~  145 (214)
                      ..+++|||+++.+.+   ..|++|||     ||+++||+||++||||+....  .++..     |..|            
T Consensus        56 ~~~~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~-----~~~~------------  118 (186)
T d1vhza_          56 IVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKL-----SMAP------------  118 (186)
T ss_dssp             EETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE-----ECCT------------
T ss_pred             ccCCEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceeccee-----eccc------------
Confidence            457889999876554   46999999     999999999999999998432  22221     1111            


Q ss_pred             CCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          146 GDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       146 ~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                       ++.....++|++..... ....     .+++|..+..|++++++.+++..
T Consensus       119 -g~~~~~~~~~~a~~~~~-~~~~-----~de~E~~~~~~~~~~e~~~~i~~  162 (186)
T d1vhza_         119 -SYFSSKMNIVVAQDLYP-ESLE-----GDEPEPLPQVRWPLAHMMDLLED  162 (186)
T ss_dssp             -TTCCCEEEEEEEEEEEE-CCCC-----CCCSSCCCEEEEEGGGGGGGGGC
T ss_pred             -cccceEEEEEEEEeccc-ccCC-----CCCCcEEEEEEEeHHHHHHHHHc
Confidence             12344455555543211 1111     24568889999999999988763

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=4.4e-13  Score=108.68  Aligned_cols=109  Identities=12%  Similarity=0.104  Sum_probs=70.8

Q ss_pred             ceEEEEEEecC-CcEEEEeecCCC--------CCeecCCC-----CCHHHHHHHHHHHHhCCCccee--eeeccceEEec
Q 028086           68 RNVGICLINSS-KKIFAASRLDIP--------DSWQMPQN-----EDPKVAALRELKEETGVSSAEV--LAEVPYWLTYD  131 (214)
Q Consensus        68 ~~v~vvI~~~~-g~vLL~rR~~~~--------g~W~lPgG-----Es~~eAA~REl~EETGl~~~~~--l~~~~~~~~~~  131 (214)
                      .+|++++++.+ ++|+|+++.+.+        ..|++|+|     ||+++||+|||+||||+....+  ++.      + 
T Consensus        58 ~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~------~-  130 (209)
T d1g0sa_          58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLS------F-  130 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEE------E-
T ss_pred             CEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccc------c-
Confidence            45666667654 679999987643        26899999     9999999999999999985332  221      1 


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCcc
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVD  196 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~  196 (214)
                      ||.           +++.....++|++........ ... ...++.|..++.|++++|+.+++..
T Consensus       131 ~~s-----------pg~~~e~~~~f~a~~~~~~~~-~~~-~~~de~E~iev~~v~~~e~~~~i~~  182 (209)
T d1g0sa_         131 LAS-----------PGGTSERSSIMVGEVDATTAS-GIH-GLADENEDIRVHVVSREQAYQWVEE  182 (209)
T ss_dssp             ESC-----------TTTBCCEEEEEEEECCGGGCC----------CCSCEEEEEEHHHHHHHHHT
T ss_pred             ccC-----------CcccCCceEEEEEEEeccccc-CCC-CCCCCCceeEEEEEeHHHHHHHHHc
Confidence            121           123456677788775432211 111 1124456778999999999988763

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.7e-12  Score=102.35  Aligned_cols=107  Identities=20%  Similarity=0.212  Sum_probs=69.0

Q ss_pred             ceEEEEEEec-CCcEEEEeecCCC---------CCeecCCC----CCHHHHHHHHHHHHhCCCcce--eeeeccceEEec
Q 028086           68 RNVGICLINS-SKKIFAASRLDIP---------DSWQMPQN----EDPKVAALRELKEETGVSSAE--VLAEVPYWLTYD  131 (214)
Q Consensus        68 ~~v~vvI~~~-~g~vLL~rR~~~~---------g~W~lPgG----Es~~eAA~REl~EETGl~~~~--~l~~~~~~~~~~  131 (214)
                      .+|+|++++. +++|+|+++.+.+         -.|++|||    |++++||+||+.||||+.+.+  .++.      + 
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d~e~p~~aA~REL~EEtG~~~~~~~~lg~------~-  116 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFE------L-  116 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECTTSCHHHHHHHHHHHHHSCCCCCCEEEEE------E-
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecCCCCHHHHHHHHHHHhhCCcceEEEEcce------e-
Confidence            4677777774 5789999976421         36778999    889999999999999998533  2222      1 


Q ss_pred             CCchhhhhhccccCCCccCceEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCc
Q 028086          132 FPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAV  195 (214)
Q Consensus       132 ~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~  195 (214)
                      |+.           +++..+..++|++...... ....  .+.+++|..+..|++++++.+++.
T Consensus       117 ~~s-----------pG~~~e~~~~f~a~~~~~~-~~~~--~~~~e~E~i~v~~~~~~e~~~~i~  166 (189)
T d1viua_         117 YMS-----------PGGVTELIHFFIAEYSDNQ-RANA--GGGVEDEDIEVLELPFSQALEMIK  166 (189)
T ss_dssp             ESC-----------TTTBCCEEEEEEEECCTTC-C-----------CCEEEEEEEHHHHHHHHH
T ss_pred             ecC-----------ccccCceEEEEEEEECCcc-cccC--CCCCCCccEEEEEEEHHHHHHHHH
Confidence            121           1234566777877654321 1111  112345778899999999998865

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.20  E-value=2.2e-11  Score=97.51  Aligned_cols=112  Identities=19%  Similarity=0.190  Sum_probs=66.4

Q ss_pred             CCccceEEEEEEecCC-----------cEEEEeecCCCCCeecCCC-----CC-HHHHHHHHHHHHhCCCc--ceeeeec
Q 028086           64 EGYRRNVGICLINSSK-----------KIFAASRLDIPDSWQMPQN-----ED-PKVAALRELKEETGVSS--AEVLAEV  124 (214)
Q Consensus        64 ~~~~~~v~vvI~~~~g-----------~vLL~rR~~~~g~W~lPgG-----Es-~~eAA~REl~EETGl~~--~~~l~~~  124 (214)
                      .++|.++.++|...++           .||+++|.+  |.|.+|||     |+ +++||.||++||||+..  ..+.. .
T Consensus        17 ~g~r~a~~~~~~~~~~~~~~~~~~~~~~vl~~~r~~--g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l~~-~   93 (196)
T d1u20a1          17 EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFD--GRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTE-D   93 (196)
T ss_dssp             SSCEEEEEEEEEEECCCEETTTEECCEEEEEEEETT--SCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCG-G
T ss_pred             CCcceEEEEEEEcCCCceEEEEecCCcEEEEEEecC--CcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEEEe-e
Confidence            4688888888875544           366777754  89999999     85 68899999999999973  22222 1


Q ss_pred             cceEEecCCchhhhhhccccCCCccCceEEEEEEEEeCCcc-ee---eccCCCCCcCceeeEEEeChhHHhh
Q 028086          125 PYWLTYDFPPEVREKLKHQWGGDWKGQAQKWFLLKFTGKEE-EI---NLLGDKSEKPEFGEWKWMSPEQILE  192 (214)
Q Consensus       125 ~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~fl~~~~~~~~-~i---~l~~~~~~~~E~~~~~Wv~~~el~~  192 (214)
                      .....+..+..             .....++|+..+....- ..   ... ....+.|+.++.|+++.++.+
T Consensus        94 ~~~~~~~~~~~-------------~~~v~~fy~~~~~~~~l~~~e~~~~~-a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1          94 DYRSSQVREHP-------------QKCVTHFYIKELKLEEIERIEAEAVN-AKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             GEEEEEEECTT-------------SCEEEEEEEEECCHHHHHHHHHHHTT-STTBTTTEEEEEECCCSBCTT
T ss_pred             EEEEeccCCCC-------------CEEEEEEEEEEcchHHhhhhhhcccc-cCcCCccccceeEEeHHHhcc
Confidence            11122211110             11234555555432110 00   000 112345889999999998765

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3e-11  Score=102.27  Aligned_cols=120  Identities=18%  Similarity=0.161  Sum_probs=71.3

Q ss_pred             cEEEEeecCCCCCeecCCC-----CCHHHHHHHHHHHHhCCCcce--eeee-----------ccceEEec-CCchhhhhh
Q 028086           80 KIFAASRLDIPDSWQMPQN-----EDPKVAALRELKEETGVSSAE--VLAE-----------VPYWLTYD-FPPEVREKL  140 (214)
Q Consensus        80 ~vLL~rR~~~~g~W~lPgG-----Es~~eAA~REl~EETGl~~~~--~l~~-----------~~~~~~~~-~p~~~~~~l  140 (214)
                      +|||++|.+ .|.|.+|||     |++.+||+||+.||||+....  ....           ......|. |-+..    
T Consensus       140 qvLlIkR~d-~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddp----  214 (292)
T d1q33a_         140 QFVAIKRKD-CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDP----  214 (292)
T ss_dssp             EEEEEECTT-TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCT----
T ss_pred             EEEEEEecC-CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeecccccccccccccccc----
Confidence            489999977 489999999     999999999999999997321  1100           00001110 00000    


Q ss_pred             ccccCCCccCceEEEEEEEEeCCcc--eeeccCCCCCcCceeeEEEeChhHHhhcCccCCHHHHHHHHHhhccc
Q 028086          141 KHQWGGDWKGQAQKWFLLKFTGKEE--EINLLGDKSEKPEFGEWKWMSPEQILERAVDFKKPVYKEVFTVFTPH  212 (214)
Q Consensus       141 ~~~~~~~~~~~~~~~fl~~~~~~~~--~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~l~~~~~~  212 (214)
                         .+..-.......|.+....+..  ...+    ...+|..+++|++++++.++. .....+++++.+.+.-|
T Consensus       215 ---rntd~aw~etva~~~h~~~~~~~~~~~l----~~~dEa~~v~W~~vde~~~L~-~~H~~il~~aa~~~~Ah  280 (292)
T d1q33a_         215 ---RNTDNAWMETEAVNYHDETGEIMDNLML----EAGDDAGKVKWVDINDKLKLY-ASHSQFIKLVAEKRDAH  280 (292)
T ss_dssp             ---TCCSSEEEEEEEEEEEESSSTTTTTCCC----CCCTTCSEEEEEECCTTCCCS-TTHHHHHHHHHHHHTCC
T ss_pred             ---CCCCCCEEEEEEEEEEEccccccccccc----CCCCchheEEEEEhhccccch-hhHHHHHHHHHHHHhcc
Confidence               0000001123445555543221  1112    234689999999999987754 34467889888887654

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.9e-10  Score=85.40  Aligned_cols=112  Identities=16%  Similarity=0.182  Sum_probs=62.9

Q ss_pred             cceEEEEEEec---CCcEEEEeecCCC---CCeecCCC-----CCHHHHHHHHHHHHhCCC-cceeeeeccceEEecCCc
Q 028086           67 RRNVGICLINS---SKKIFAASRLDIP---DSWQMPQN-----EDPKVAALRELKEETGVS-SAEVLAEVPYWLTYDFPP  134 (214)
Q Consensus        67 ~~~v~vvI~~~---~g~vLL~rR~~~~---g~W~lPgG-----Es~~eAA~REl~EETGl~-~~~~l~~~~~~~~~~~p~  134 (214)
                      +..+.++|.+.   +|+|||.+|...+   |.|+||+|     |+..++|.||..+|.+.. ........ ..+.+.   
T Consensus        12 ~~~~~~vv~~~~~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~-~~v~H~---   87 (142)
T d1x51a1          12 ESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHL-GEVVHT---   87 (142)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEEC-CCBCCB---
T ss_pred             EEEEEEEEEecCCCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeee-ccceec---
Confidence            34444455543   6799999997653   99999999     567777766655555543 22211111 111121   


Q ss_pred             hhhhhhccccCCCccCc--eEEEEEEEEeCCcceeeccCCCCCcCceeeEEEeChhHHhhcCccC-CHHHHHH
Q 028086          135 EVREKLKHQWGGDWKGQ--AQKWFLLKFTGKEEEINLLGDKSEKPEFGEWKWMSPEQILERAVDF-KKPVYKE  204 (214)
Q Consensus       135 ~~~~~l~~~~~~~~~~~--~~~~fl~~~~~~~~~i~l~~~~~~~~E~~~~~Wv~~~el~~~~~~~-~~~~~~~  204 (214)
                                   |.+.  ..++|.+....+  .+..       .|..+++|++++++.++.+|. .+++++.
T Consensus        88 -------------fsH~~~~~~v~~~~~~~~--~~~~-------~~~~~~~W~~~~el~~~~lp~~~~Kil~~  138 (142)
T d1x51a1          88 -------------FSHIKLTYQVYGLALEGQ--TPVT-------TVPPGARWLTQEEFHTAAVSTAMKKVFRV  138 (142)
T ss_dssp             -------------CSSCEEEEEEEEEECSSC--CCCC-------CCCTTEEEEEHHHHHHSCCCHHHHHHHHH
T ss_pred             -------------cCCcceEEEEEEEEEeCC--Cccc-------ccCccCEEeeHHHccccCCCHHHHHHHHH
Confidence                         1222  234455544322  2221       366789999999999886643 3444433