Citrus Sinensis ID: 028128

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELFSFLLKHELYCCYWSEGKEHFICDLCV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHccccccHHHHcccccHHEEEEEcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccc
Coil and Loop (DISEMBL)
maereenpaeppmekvsekihdhdsssssssdsdneepaaqssvkADIYRLfgrerpvhqvfgggkpaDVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHtfikkappcipevhlpeepflQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELFSFLLKHELYCcywsegkehficdlcv
Flexible Loop (DISEMBL)
maereenpaeppmekvseKIHDHDsssssssdsdneepAAQSSVKADIYRLFGRerpvhqvfgggkPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELFSFLLKHELYCCYWSEGKEHFICDLCV
Low Complexity Region (SEG)
MAEREENPAEPPMEKVSEKIhdhdsssssssdsdNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTlilalailflWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELFSFLLKHELYCCYWSEGKEHFICDLCV
Disordered region (IsUnstruct)
*********************************************ADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELFSFLLKHELYCCYWSEGKEHFICDLC*
Disordered Region (DISOPRED)
************************************************************VFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELFSFLLKHELYCCYWSEGKEHFICDLCV
Disordered Region (DISEMBL)
******************************************SVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELFSFLLKHELYCCYWSEGKEHFICDLCV
Disordered Region (DISPRO)
*********************************************ADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELFSFLLKHELYCCYWSEGKEHFICDLCV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELFSFLLKHELYCCYWSEGKEHFICDLCV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
O82352	255	Reticulon-like protein B5	no	no	0.915	0.764	0.622	7e-60
Q9SH59	255	Reticulon-like protein B3	no	no	0.816	0.682	0.661	3e-55
Q6DBN4	253	Reticulon-like protein B6	no	no	0.906	0.762	0.603	4e-54
Q9SUR3	275	Reticulon-like protein B1	no	no	0.671	0.52	0.648	1e-53
Q9SUT9	271	Reticulon-like protein B2	no	no	0.849	0.667	0.593	2e-53
Q9FFS0	257	Reticulon-like protein B4	no	no	0.849	0.704	0.572	5e-51
Q9M145	244	Reticulon-like protein B7	no	no	0.746	0.651	0.481	2e-34
Q9SS37	247	Reticulon-like protein B8	no	no	0.784	0.676	0.407	3e-32
Q9LJQ5	225	Reticulon-like protein B9	no	no	0.741	0.702	0.355	8e-28
Q8GYH6	226	Reticulon-like protein B1	no	no	0.699	0.659	0.346	1e-19

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score =  230 bits (586), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 127/204 (62%), Positives = 150/204 (73%), Gaps = 9/204 (4%)

Query: 1   MAEREENPA---EPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MAE  E      E  MEK+SEKIH HDSSSSS S+   E+P + S+VKA IYR+FGRE+P
Sbjct: 1   MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEY--EKPDSPSAVKAKIYRMFGREKP 58

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH+V GGGKPADVFLWR+KK+S  VLG ATAIWVLFEL EYHLL+L+CH  ILAL  LFL
Sbjct: 59  VHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFL 118

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           W+NAHT I K  P IPE+H+PEE FL VAS+ R ELN AF +LRSIA GRDLK FLMV  
Sbjct: 119 WSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVV 178

Query: 178 --FSIHLICELFSFLLKHELYCCY 199
             + I ++   F+FL    +Y C+
Sbjct: 179 GLWIISVVGNWFNFLTL--VYICF 200

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 117/177 (66%), Positives = 140/177 (79%), Gaps = 3/177 (1%)

Query: 1   MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQ 60
           MAE E    E  MEK+SEKIH HD SSSSSSDSD+++ +A  S+K  IYRLFGRE+P+H+
Sbjct: 1   MAE-EHKHEESIMEKISEKIHGHDDSSSSSSDSDDDKNSA--SLKTKIYRLFGREQPLHK 57

Query: 61  VFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWAN 120
           +FGGGKPAD+FLWRNKK+S GVLG AT  W+LFEL EY+LLTL  H  ILALA+LFLW++
Sbjct: 58  LFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSS 117

Query: 121 AHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           A TFI K+P  IPEVH+PE+  LQ+AS  RIE+N  F VLR IASGRDLK FL+V A
Sbjct: 118 ASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIA 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score =  211 bits (536), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 120/199 (60%), Positives = 148/199 (74%), Gaps = 6/199 (3%)

Query: 3   EREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVF 62
           E+  +  E  MEK+++KIHD    SSSSSDS++E+P + S++KA IYRLFGRE+PVH+V 
Sbjct: 6   EKSMHKEESLMEKIADKIHD--HDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVL 63

Query: 63  GGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAH 122
           GGG PADVFLWR+KK+SA VLG ATAIWVLFEL EYH L+LVCH LI ALA LFL +NAH
Sbjct: 64  GGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAH 123

Query: 123 TFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVC--AFSI 180
            F+ K PP IPE+H+ EE FL + SA R ELN AF +LRSIA GRDLK FLMV    + I
Sbjct: 124 AFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWII 183

Query: 181 HLICELFSFLLKHELYCCY 199
            ++   F+FL    +Y C+
Sbjct: 184 SVVGNWFNFL--TLVYICF 200

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score =  209 bits (531), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/145 (64%), Positives = 118/145 (81%), Gaps = 2/145 (1%)

Query: 48  IYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHT 107
           +YRLFGRE+PVH+V GGGKPAD+F+W+NKK+S GVLGGATA WV+FEL EYHLLTL+CH 
Sbjct: 70  VYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHV 129

Query: 108 LILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGR 167
           +I+ LA+LFLW+NA  FI K+PP IPEVH+PEEP LQ+AS  RIE+N  F+ LR IASGR
Sbjct: 130 MIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGR 189

Query: 168 DLKSFLMVCA--FSIHLICELFSFL 190
           DLK FL+  A  + + ++   F+FL
Sbjct: 190 DLKKFLIAIAGLWVLSILGGCFNFL 214

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 136/187 (72%), Gaps = 6/187 (3%)

Query: 10  EPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKAD----IYRLFGRERPVHQVFGGG 65
           E  MEK+SEKIH    SSSSSS  D  E  + SS        +YRLFGRERPVH+V GGG
Sbjct: 24  ESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGG 83

Query: 66  KPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFI 125
           KPAD+F+W++KK+S GV GGAT  WVLFEL EYHLLTL+CH +I+ALA+LFLW+NA  FI
Sbjct: 84  KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFI 143

Query: 126 KKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA--FSIHLI 183
            K+PP IPEVH+PEEP LQ+AS  RIE+N   + LR IASGRD+K FL   A  + + ++
Sbjct: 144 HKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSIL 203

Query: 184 CELFSFL 190
              +SFL
Sbjct: 204 GGCYSFL 210

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score =  200 bits (509), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 106/185 (57%), Positives = 134/185 (72%), Gaps = 4/185 (2%)

Query: 10  EPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKAD--IYRLFGRERPVHQVFGGGKP 67
           E  +EK+ EKIH H  SSS S   D+++  + SS      IYRLFGRE+PVH+V GGGKP
Sbjct: 9   ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKP 68

Query: 68  ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKK 127
           AD+FLWRNKK+S GVLG  TA WVLFELFEYHLL  +CH  I ALA LFLW+NA TFI K
Sbjct: 69  ADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHK 128

Query: 128 APPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA--FSIHLICE 185
           + P IPEVH+PE+P LQ+ S  RIE+N    +LR+IASG+D+K F++V A  + + +I  
Sbjct: 129 STPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS 188

Query: 186 LFSFL 190
            ++FL
Sbjct: 189 CYNFL 193

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M145|RTNLG_ARATH Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=3 SV=2

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 109/166 (65%), Gaps = 7/166 (4%)

Query: 36  EEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFEL 95
           E+P +   + A IYR+FGRERP+H V GGGKPADV LWR+KK++ G+L   T IW+LF  
Sbjct: 39  EKPDSPVPINAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGF 98

Query: 96  FEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNH 155
               LLT +C   IL L + FLW+NA   + K+P  + ++++PE+P LQ ASA   ELN 
Sbjct: 99  GGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNC 155

Query: 156 AFAVLRSIASGRDLKSFLM--VCAFSIHLICELFSFLLKHELYCCY 199
           AFA LRSIA  RD+K+F+M  +  + + +I   FSFL    LY C+
Sbjct: 156 AFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFL--SLLYICF 199

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 100/167 (59%)

Query: 8   PAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKP 67
           P +  +E V   + D+ + +   +   +     + SV +   RLF R++P+H V GGGK 
Sbjct: 2   PDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSSRFNRLFDRQKPIHHVLGGGKS 61

Query: 68  ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKK 127
           ADV LWRNKKISA VL GATAIWVLFE   +H L+LVC+ L+L +   F+W+NA  F+ +
Sbjct: 62  ADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNR 121

Query: 128 APPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLM 174
           +   +P + LP++ F +V  A   E+N     L+ +A   +LK FLM
Sbjct: 122 SQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLM 168

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1

 Score =  123 bits (309), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 8/166 (4%)

Query: 27  SSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGA 86
           + SSSDS++E    +++      +LF R+R +H +FGGGK AD+ LWR  KI+A ++ G 
Sbjct: 5   TGSSSDSEDERTIHKTT------KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGV 58

Query: 87  TAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVA 146
           + +W L E+ EY+ +TL+CH  + ++   F+W+ A  F+    P IPEV L E  F Q+A
Sbjct: 59  SILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLA 118

Query: 147 SAFRIELNHAFAVLRSIASGRDLKSFLM--VCAFSIHLICELFSFL 190
            +F +  N     L  +A GRD   F +  +  + + +I   F+F+
Sbjct: 119 RSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFV 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 24  DSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVL 83
           DS S    D D       SS     YRL GR+  VHQ  GGGK AD+ LWR + +S GV+
Sbjct: 2   DSLSDIDGDFDGRNEGGSSSD----YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVI 57

Query: 84  GGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFL 143
             +T  W++FE      L++    L++ + I F+ A    F  +    +PE+ L EE   
Sbjct: 58  IISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVN 117

Query: 144 QVASAFRIELNHAFAVLRSIASGRDLKSFLMVC 176
             A++FRI+LNH   +   +  G D + F  V 
Sbjct: 118 SAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVV 150

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
255541732	253	conserved hypothetical protein [Ricinus	0.830	0.699	0.752	2e-65
224127784	251	predicted protein [Populus trichocarpa]	0.826	0.701	0.694	7e-60
118485241	251	unknown [Populus trichocarpa]	0.826	0.701	0.689	2e-59
359474299	256	PREDICTED: uncharacterized protein LOC10	0.812	0.675	0.677	3e-59
297742260	252	unnamed protein product [Vitis vinifera]	0.812	0.686	0.677	4e-59
359489676	255	PREDICTED: reticulon-like protein B1 iso	0.826	0.690	0.672	5e-59
186508540	187	reticulon-like protein B5 [Arabidopsis t	0.854	0.973	0.663	5e-59
255537629	260	conserved hypothetical protein [Ricinus	0.812	0.665	0.711	1e-58
85070182	211	unknown [Vitis pseudoreticulata]	0.826	0.834	0.666	1e-58
192910708	254	24 kDa seed maturation protein [Elaeis g	0.826	0.692	0.694	1e-58

>gi|255541732|ref|XP_002511930.1| conserved hypothetical protein [Ricinus communis] gi|223549110|gb|EEF50599.1| conserved hypothetical protein [Ricinus communis]

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/178 (75%), Positives = 150/178 (84%), Gaps = 1/178 (0%)

Query: 1   MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDN-EEPAAQSSVKADIYRLFGRERPVH 59
           MAE  E+P E  MEK+SEKIH HDSSSSS S+SD+ ++P + SSVKA I+RLFGRERPVH
Sbjct: 1   MAEHPESPIESVMEKISEKIHAHDSSSSSDSESDSEKKPTSPSSVKAKIFRLFGRERPVH 60

Query: 60  QVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWA 119
            V GGGKPADVFLWRNKKISA VLG ATAIW+LFEL EYHLLTLVCH  IL LAILFLW+
Sbjct: 61  HVLGGGKPADVFLWRNKKISASVLGTATAIWILFELIEYHLLTLVCHISILTLAILFLWS 120

Query: 120 NAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           NAHTFI K PP IP+VH+PEEP LQVASA  +E+NH FAVLRSIASG+DLK FL+V A
Sbjct: 121 NAHTFINKTPPRIPQVHIPEEPVLQVASALTMEINHGFAVLRSIASGKDLKKFLVVIA 178

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127784|ref|XP_002320163.1| predicted protein [Populus trichocarpa] gi|118481592|gb|ABK92738.1| unknown [Populus trichocarpa] gi|222860936|gb|EEE98478.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 123/177 (69%), Positives = 144/177 (81%), Gaps = 1/177 (0%)

Query: 1   MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQ 60
           MAE+ ENP E  M K+SEKIH H+SSSS S     ++     SVK  I+RLFGRE+PVH+
Sbjct: 1   MAEQSENPIESVMGKISEKIH-HESSSSDSESDSEKKSYPSESVKDKIWRLFGREKPVHR 59

Query: 61  VFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWAN 120
           V GGGKPADVFLWRNKK+SAGVLG ATAIWVLFEL EY+LLTLVCH LIL+LA+ FLW+N
Sbjct: 60  VLGGGKPADVFLWRNKKVSAGVLGFATAIWVLFELVEYNLLTLVCHILILSLALSFLWSN 119

Query: 121 AHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           AH+FI K+PP IP+VHLPEEP LQVASA  +E+N AF VLRSIA+G+DLK FL+V A
Sbjct: 120 AHSFINKSPPRIPQVHLPEEPVLQVASALCVEINGAFVVLRSIAAGKDLKKFLIVIA 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485241|gb|ABK94480.1| unknown [Populus trichocarpa]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/177 (68%), Positives = 144/177 (81%), Gaps = 1/177 (0%)

Query: 1   MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQ 60
           MAE+ E+P E  M K+SEKIH H+SSSS S     ++     SVK  I+RLFGRE+PVH+
Sbjct: 1   MAEQSEDPIESVMGKISEKIH-HESSSSDSESDSEKKSYPSESVKDKIWRLFGREKPVHR 59

Query: 61  VFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWAN 120
           V GGGKPADVFLWRNKK+SAGVLG ATAIWVLFEL EY+LLTLVCH LIL+LA+ FLW+N
Sbjct: 60  VLGGGKPADVFLWRNKKVSAGVLGFATAIWVLFELVEYNLLTLVCHILILSLALSFLWSN 119

Query: 121 AHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           AH+FI K+PP IP+VHLPEEP LQVASA  +E+N AF VLRSIA+G+DLK FL+V A
Sbjct: 120 AHSFINKSPPRIPQVHLPEEPVLQVASALCVEINGAFVVLRSIAAGKDLKKFLIVIA 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474299|ref|XP_002277080.2| PREDICTED: uncharacterized protein LOC100267262 [Vitis vinifera]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 144/180 (80%), Gaps = 7/180 (3%)

Query: 1   MAEREEN---PAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MA+ E++   P E  MEK+SEKIH HDSSSS S +      ++ S+ KA +YR+FGRE+P
Sbjct: 5   MADHEDSTPSPVESMMEKISEKIHGHDSSSSDSDNEK----SSPSAFKAKVYRIFGREKP 60

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH+V GGGKPADV LWRNKKISAGVLGGATA+W+LFEL EYHLLTLVCH  ILALAILFL
Sbjct: 61  VHKVLGGGKPADVVLWRNKKISAGVLGGATAVWILFELLEYHLLTLVCHCSILALAILFL 120

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           W+NA TFI KAPP IPEVH+PE+P LQ ASA RIE+N  F +LR++ASG+DLK FL V A
Sbjct: 121 WSNATTFINKAPPHIPEVHIPEDPVLQFASALRIEINRGFTLLRNVASGKDLKKFLSVIA 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742260|emb|CBI34409.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 144/180 (80%), Gaps = 7/180 (3%)

Query: 1   MAEREEN---PAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MA+ E++   P E  MEK+SEKIH HDSSSS S +      ++ S+ KA +YR+FGRE+P
Sbjct: 1   MADHEDSTPSPVESMMEKISEKIHGHDSSSSDSDNEK----SSPSAFKAKVYRIFGREKP 56

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH+V GGGKPADV LWRNKKISAGVLGGATA+W+LFEL EYHLLTLVCH  ILALAILFL
Sbjct: 57  VHKVLGGGKPADVVLWRNKKISAGVLGGATAVWILFELLEYHLLTLVCHCSILALAILFL 116

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           W+NA TFI KAPP IPEVH+PE+P LQ ASA RIE+N  F +LR++ASG+DLK FL V A
Sbjct: 117 WSNATTFINKAPPHIPEVHIPEDPVLQFASALRIEINRGFTLLRNVASGKDLKKFLSVIA 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489676|ref|XP_003633964.1| PREDICTED: reticulon-like protein B1 isoform 2 [Vitis vinifera] gi|359489678|ref|XP_003633965.1| PREDICTED: reticulon-like protein B1 isoform 3 [Vitis vinifera] gi|297745364|emb|CBI40444.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 121/180 (67%), Positives = 145/180 (80%), Gaps = 4/180 (2%)

Query: 1   MAEREEN---PAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MAE  E     +E  +EK+++K+  HDSSSS S    +++PA+ S +KA ++RLFGRE+P
Sbjct: 1   MAEHAEGSGAASESLLEKITDKLQGHDSSSSGSDSD-SDKPASPSPIKAKVFRLFGREKP 59

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH V GGGK ADVFLWRNKKISAGVLGGATA+WVLFEL EYHLLTLVCH LIL+LAILFL
Sbjct: 60  VHTVLGGGKHADVFLWRNKKISAGVLGGATAMWVLFELLEYHLLTLVCHILILSLAILFL 119

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           W+NA TFI K+PP IPEVH+PE+PFLQ  +A RIE+N  FAVLR IASGRDLK FL++ A
Sbjct: 120 WSNATTFINKSPPRIPEVHIPEDPFLQAVNALRIEINCGFAVLRDIASGRDLKKFLIIIA 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186508540|ref|NP_001118533.1| reticulon-like protein B5 [Arabidopsis thaliana] gi|330255558|gb|AEC10652.1| reticulon-like protein B5 [Arabidopsis thaliana]

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 144/187 (77%), Gaps = 5/187 (2%)

Query: 1   MAEREENPA---EPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MAE  E      E  MEK+SEKIH HDSSSSS S+   E+P + S+VKA IYR+FGRE+P
Sbjct: 1   MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESE--YEKPDSPSAVKAKIYRMFGREKP 58

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH+V GGGKPADVFLWR+KK+S  VLG ATAIWVLFEL EYHLL+L+CH  ILAL  LFL
Sbjct: 59  VHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFL 118

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           W+NAHT I K  P IPE+H+PEE FL VAS+ R ELN AF +LRSIA GRDLK FLMVC+
Sbjct: 119 WSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVCS 178

Query: 178 FSIHLIC 184
           F +  +C
Sbjct: 179 FFVADVC 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537629|ref|XP_002509881.1| conserved hypothetical protein [Ricinus communis] gi|223549780|gb|EEF51268.1| conserved hypothetical protein [Ricinus communis]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 126/177 (71%), Positives = 148/177 (83%), Gaps = 4/177 (2%)

Query: 5   EENPAEPPMEKVSEKIHDHDSSSSSSSDSDNE----EPAAQSSVKADIYRLFGRERPVHQ 60
           EE+  E  M+K+SEKIH HDSSSSS SD+D +     P++ SS+K+ IYRLFGRE+PVH 
Sbjct: 8   EESKGESLMDKISEKIHGHDSSSSSDSDNDEKLKPKSPSSPSSIKSKIYRLFGREKPVHH 67

Query: 61  VFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWAN 120
           V GGGKPAD+FLWRNKK+SAGVLG ATA+WVLFEL EYHLLTL+CH  ILALAILFLW+N
Sbjct: 68  VLGGGKPADIFLWRNKKVSAGVLGFATAVWVLFELIEYHLLTLICHGFILALAILFLWSN 127

Query: 121 AHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           A TFI K+PP IPEVH+PEEP LQVA+A R+E+N+AFA+LR IASGRDLK FL V A
Sbjct: 128 ASTFINKSPPHIPEVHIPEEPVLQVAAALRMEINYAFAILRDIASGRDLKKFLSVIA 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|85070182|gb|ABC69764.1| unknown [Vitis pseudoreticulata]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 120/180 (66%), Positives = 144/180 (80%), Gaps = 4/180 (2%)

Query: 1   MAEREEN---PAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MAE  E     +E  +EK+++K+  HDSSSS S     ++ A+ S +KA ++RLFGRE+P
Sbjct: 1   MAEHAEGSGAASESLLEKITDKLQGHDSSSSDSDSDS-DKAASPSPIKAKVFRLFGREKP 59

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH V GGGK ADVFLWRNKKISAGVLGGATA+WVLFEL EYHLLTLVCH LIL+LAILFL
Sbjct: 60  VHTVLGGGKHADVFLWRNKKISAGVLGGATAMWVLFELLEYHLLTLVCHILILSLAILFL 119

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           W+NA TFI K+PP IP+VH+PE+PFLQ  +A RIE+NH FAVLR IASGRDLK FL++ A
Sbjct: 120 WSNATTFINKSPPRIPDVHIPEDPFLQAVNALRIEINHGFAVLREIASGRDLKKFLIIIA 179

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910708|gb|ACF06462.1| 24 kDa seed maturation protein [Elaeis guineensis]

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/180 (69%), Positives = 143/180 (79%), Gaps = 4/180 (2%)

Query: 1   MAEREENPAEPP---MEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
           MAE  E  +  P   MEK++EK+H  DSSSSS SD++  EP+A SSVKA IYRLFGRE P
Sbjct: 1   MAEHSEEASSKPESLMEKIAEKLHGDDSSSSSDSDNEKSEPSA-SSVKAKIYRLFGREEP 59

Query: 58  VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
           VH+V GGGKPADVFLWRNKKISAGVLGGATA+WVLFEL +YHLLTLV H L+L+LAILFL
Sbjct: 60  VHKVLGGGKPADVFLWRNKKISAGVLGGATAVWVLFELLDYHLLTLVGHCLVLSLAILFL 119

Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
           W+NA TFI K PP IPEV +PE+  + VA + R E+N AFAVLR IASGRDLK FL V A
Sbjct: 120 WSNASTFINKIPPHIPEVSIPEDVAINVALSLRYEINRAFAVLRDIASGRDLKKFLAVIA 179

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.915	0.764	0.549	1.7e-50
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.849	0.658	0.523	2.3e-48
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.849	0.667	0.524	4.2e-47
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	0.849	0.704	0.502	4.8e-46
TAIR|locus:2082772	264	AT3G61560 [Arabidopsis thalian	0.577	0.465	0.52	1e-29
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.661	0.626	0.363	5.3e-24
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.685	0.719	0.304	2e-17
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.577	0.493	0.260	1.4e-14
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.638	0.676	0.289	2.7e-13
TAIR|locus:2090609	218	AT3G19460 "AT3G19460" [Arabido	0.586	0.573	0.310	1e-11

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 112/204 (54%), Positives = 134/204 (65%)

Query:     1 MAEREEN--PAEPP-MEKVSEKIXXXXXXXXXXXXXXNEEPAAQSSVKADIYRLFGRERP 57
             MAE  E   P E   MEK+SEKI               E+P + S+VKA IYR+FGRE+P
Sbjct:     1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEY--EKPDSPSAVKAKIYRMFGREKP 58

Query:    58 VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXX 117
             VH+V GGGKPADVFLWR+KK+S  VLG ATAIWVLFEL EYHLL+L+CH           
Sbjct:    59 VHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFL 118

Query:   118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
             W+NAHT I K  P IPE+H+PEE FL VAS+ R ELN AF +LRSIA GRDLK FLMV  
Sbjct:   119 WSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVV 178

Query:   178 --FSIHLICELFSFLLKHELYCCY 199
               + I ++   F+FL    +Y C+
Sbjct:   179 GLWIISVVGNWFNFLTL--VYICF 200

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 100/191 (52%), Positives = 129/191 (67%)

Query:    10 EPPMEKVSEKIXXXXXXXXXXXXXXNEE-------PAA-QSSVKADIYRLFGRERPVHQV 61
             E  M+K+SEKI              +E+       P++  SS+K+ +YRLFGRE+PVH+V
Sbjct:    24 ESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKV 83

Query:    62 FGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANA 121
              GGGKPAD+F+W+NKK+S GVLGGATA WV+FEL EYHLLTL+CH           W+NA
Sbjct:    84 LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143

Query:   122 HTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA--FS 179
               FI K+PP IPEVH+PEEP LQ+AS  RIE+N  F+ LR IASGRDLK FL+  A  + 
Sbjct:   144 TMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWV 203

Query:   180 IHLICELFSFL 190
             + ++   F+FL
Sbjct:   204 LSILGGCFNFL 214

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 98/187 (52%), Positives = 124/187 (66%)

Query:    10 EPPMEKVSEKIXXXXXXXXXXXXXX-NEEPAAQSS---VKADIYRLFGRERPVHQVFGGG 65
             E  MEK+SEKI               NE+ ++ SS   +K+ +YRLFGRERPVH+V GGG
Sbjct:    24 ESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGG 83

Query:    66 KPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFI 125
             KPAD+F+W++KK+S GV GGAT  WVLFEL EYHLLTL+CH           W+NA  FI
Sbjct:    84 KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFI 143

Query:   126 KKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA--FSIHLI 183
              K+PP IPEVH+PEEP LQ+AS  RIE+N   + LR IASGRD+K FL   A  + + ++
Sbjct:   144 HKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSIL 203

Query:   184 CELFSFL 190
                +SFL
Sbjct:   204 GGCYSFL 210

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 93/185 (50%), Positives = 123/185 (66%)

Query:    10 EPPMEKVSEKIXXXXXXXXXXXXXXNEEP--AAQSSVKADIYRLFGRERPVHQVFGGGKP 67
             E  +EK+ EKI              +++   ++ SS K+ IYRLFGRE+PVH+V GGGKP
Sbjct:     9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKP 68

Query:    68 ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKK 127
             AD+FLWRNKK+S GVLG  TA WVLFELFEYHLL  +CH           W+NA TFI K
Sbjct:    69 ADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHK 128

Query:   128 APPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA--FSIHLICE 185
             + P IPEVH+PE+P LQ+ S  RIE+N    +LR+IASG+D+K F++V A  + + +I  
Sbjct:   129 STPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS 188

Query:   186 LFSFL 190
              ++FL
Sbjct:   189 CYNFL 193

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2082772 AT3G61560 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 65/125 (52%), Positives = 82/125 (65%)

Query:     3 EREENPAEPPMEKVSEKIXXXXXXXXXXXXXXNEEPAAQSSVKADIYRLFGRERPVHQVF 62
             E+  +  E  MEK+++KI              +E+P + S++KA IYRLFGRE+PVH+V 
Sbjct:     6 EKSMHKEESLMEKIADKIHDHDSSSSSDSE--HEKPESPSALKAKIYRLFGREKPVHKVL 63

Query:    63 GGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAH 122
             GGG PADVFLWR+KK+SA VLG ATAIWVLFEL EYH L+LVCH            +NAH
Sbjct:    64 GGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAH 123

Query:   123 TFIKK 127
              F+ K
Sbjct:   124 AFMNK 128

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 52/143 (36%), Positives = 79/143 (55%)

Query:    50 RLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXX 109
             +LF R+R +H +FGGGK AD+ LWR  KI+A ++ G + +W L E+ EY+ +TL+CH   
Sbjct:    22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASM 81

Query:   110 XXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDL 169
                     W+ A  F+    P IPEV L E  F Q+A +F +  N     L  +A GRD 
Sbjct:    82 TSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDP 141

Query:   170 KSFLM--VCAFSIHLICELFSFL 190
               F +  +  + + +I   F+F+
Sbjct:   142 PLFFLTTISLYIVSIIGTYFNFV 164

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/148 (30%), Positives = 73/148 (49%)

Query:    50 RLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXX 109
             +LF R+R +H++ GGG  ADV LWR K +S G++    A W++FE F Y + TL+     
Sbjct:     7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLL 66

Query:   110 XXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDL 169
                     W+ + + + +  P +PE  + E    + +   RI +N    V   IA  RD 
Sbjct:    67 LLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDS 126

Query:   170 KSFLMVCAFSIHLICELFSFLLKHELYC 197
             + +  V A S+ L+  L   L+  +  C
Sbjct:   127 ELYTKV-AVSLFLL-SLIGSLMDFQTLC 152

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
 Identities = 32/123 (26%), Positives = 55/123 (44%)

Query:    68 ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKK 127
             AD+ LWR + +S GV+  +T  W++FE      L++               A    F  +
Sbjct:    64 ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNR 123

Query:   128 APPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELF 187
                 +PE+ L EE     A++FRI+LNH   +   +  G D + F       + L+  + 
Sbjct:   124 QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIG 183

Query:   188 SFL 190
             S++
Sbjct:   184 SYI 186

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 40/138 (28%), Positives = 61/138 (44%)

Query:    55 ERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXX 114
             E  VHQ    G  AD+ +W+N++    +LG  T +W LFE   Y     V +T       
Sbjct:     2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVI 61

Query:   115 XXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLM 174
                WA +     +  P +P + + EE    VA A R+ +N   AV R I  GR+ K    
Sbjct:    62 LFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFR 121

Query:   175 VCA--FSIHLICELFSFL 190
             V    +++  +    +FL
Sbjct:   122 VSVVLWTVSFVGNFLNFL 139

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090609 AT3G19460 "AT3G19460" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 41/132 (31%), Positives = 64/132 (48%)

Query:    68 ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKK 127
             AD+ LWRN+  +  +L  +T  W LFE   Y+LL+ V +           WA + T + +
Sbjct:     7 ADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNR 66

Query:   128 APPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHL---IC 184
               P +P + +PEE   + A   R+ +N+  ++   I   R+    L V  F  HL   IC
Sbjct:    67 PLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQV--FFHHLWQTIC 124

Query:   185 ELFSFLLKHELY 196
              +F FL  H +Y
Sbjct:   125 CIFLFL--HVMY 134


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.139   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       189   0.00089  110 3  11 22  0.38    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  180 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.47u 0.09s 14.56t   Elapsed:  00:00:01
  Total cpu time:  14.47u 0.09s 14.56t   Elapsed:  00:00:01
  Start:  Fri May 10 03:42:56 2013   End:  Fri May 10 03:42:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00140364 SubName- Full=Putative uncharacterized protein; (251 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	213
pfam02453	164	pfam02453, Reticulon, Reticulon	4e-39

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  131 bits (333), Expect = 4e-39
 Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 67  PADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIK 126
            AD+ LWR+ K S  V G    IW+LF L  Y LL+++ + L+L LA+ FLW  A   + 
Sbjct: 1   VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLN 60

Query: 127 KAPPC-IPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLM--VCAFSIHLI 183
             P    P+V L EE   ++A + R+ +N A   LR +  G DL   L   V  + +  +
Sbjct: 61  AVPEPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSYL 120

Query: 184 CELFSFL 190
             LFS L
Sbjct: 121 GSLFSGL 127

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	99.9
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	89.95
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	89.73
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	85.93

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-47  Score=330.06  Aligned_cols=172  Identities=52%  Similarity=0.831  Sum_probs=161.8

Q ss_pred             CCCCCCCCCCCccccccchhccccccCCCCchhhhcCCCcccceeeeccCcchhhHHHHHHHHHHHHHHhccchHHHHHH
Q 028128           27 SSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCH  106 (213)
Q Consensus        27 ~~s~s~~~~~~~~~~~~~~~~~~rlfgr~~~vh~~LGGGkvADvlLWRdkk~Sg~VL~~~t~iw~LFel~~ysllSlv~~  106 (213)
                      ++|++|+++++.++++ .+++++|+|+||+|+|+++|||++||++||||+|.||+||+++|++|++||..+|+++|++|+
T Consensus         4 ~~s~~~~~~~~~~~~s-~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~   82 (230)
T KOG1792|consen    4 LISSSNSESEKLKFTS-AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCH   82 (230)
T ss_pred             cccccccccccccccc-ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3444488888877666 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcc-CCC--CCC-ccccChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHH-
Q 028128          107 TLILALAILFLWANAHTFIKK-APP--CIP-EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIH-  181 (213)
Q Consensus       107 illl~L~~lFlws~~~~~lnk-s~p--~iP-~v~lsee~v~~~a~~l~~~iN~~l~~lr~Ia~gkDl~~flkvi~~Lwv-  181 (213)
                      +++++++++|+|+|+..++|| ++|  .+| ++++|||.++++|++++.++|++++.+|++++|||+++|+|++++||+ 
T Consensus        83 i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~l  162 (230)
T KOG1792|consen   83 ILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWIL  162 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            999999999999999998888 677  788 999999999999999999999999999999999999999999999999 


Q ss_pred             -HHHhhcchhHHHHHHHHHhc
Q 028128          182 -LICELFSFLLKHELYCCYWS  201 (213)
Q Consensus       182 -~VGs~fn~LTL~~l~ig~~~  201 (213)
                       +||+||||+|+  +|+|+-.
T Consensus       163 S~vGs~fn~lTl--l~ig~v~  181 (230)
T KOG1792|consen  163 SYVGSLFNFLTL--LYIGLVL  181 (230)
T ss_pred             HHHHHhhhHHHH--HHHHHHH
Confidence             99999999999  7777643

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=99.90  E-value=5.4e-27  Score=189.91  Aligned_cols=132  Identities=33%  Similarity=0.513  Sum_probs=50.4

Q ss_pred             ccceeeeccCcchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCCccccChH
Q 028128           67 PADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAP------PCIPEVHLPEE  140 (213)
Q Consensus        67 vADvlLWRdkk~Sg~VL~~~t~iw~LFel~~ysllSlv~~illl~L~~lFlws~~~~~lnks~------p~iP~v~lsee  140 (213)
                      |+|+++||||+.||.+|++++++|++|++++||++|++|+++++++.+.++|....+++++.+      |+.++.++|||
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE   80 (169)
T ss_dssp             ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence            689999999999999999999999999999999999999999999999999999989888876      55568999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHH--HHHhhcchhHHHHHHHHHh
Q 028128          141 PFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIH--LICELFSFLLKHELYCCYW  200 (213)
Q Consensus       141 ~v~~~a~~l~~~iN~~l~~lr~Ia~gkDl~~flkvi~~Lwv--~VGs~fn~LTL~~l~ig~~  200 (213)
                      .++++++.++..+|..+..+|++..++|.+.+++++++||+  ++|+++|+.||  +|+++.
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L--~~l~~~  140 (169)
T PF02453_consen   81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTL--LYLGVL  140 (169)
T ss_dssp             HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHH--HHHHHH
Confidence            99999999999999999999999999999999999999999  99999999999  554443

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=89.95  E-value=4.1  Score=37.33  Aligned_cols=40  Identities=13%  Similarity=0.158  Sum_probs=25.7

Q ss_pred             cchhccccccCCCCchhhhcCCCcccceeeeccCcchhhHHHHHHH
Q 028128           43 SVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATA   88 (213)
Q Consensus        43 ~~~~~~~rlfgr~~~vh~~LGGGkvADvlLWRdkk~Sg~VL~~~t~   88 (213)
                      .+.++..++|-=+..++      .+.+++.|+|+-.+-.++...|.
T Consensus        14 ~l~~~l~~~f~~~~~~d------~vl~il~W~~p~~t~~~L~l~t~   53 (359)
T PF06398_consen   14 RLSSRLGPIFPFQLILD------RVLRILTWTNPDYTLSFLLLYTF   53 (359)
T ss_pred             HHHHHHHHhhHHHHHHH------HHHHeEEeCCCCcchHHHHHHHH
Confidence            34445555554443333      35689999999998888766653

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=89.73  E-value=0.078  Score=44.44  Aligned_cols=55  Identities=20%  Similarity=0.269  Sum_probs=39.5

Q ss_pred             ccccchhccccccCCCCchhhhcC-----CCcccceeeeccCcchhhHHHHHHHHHHHHH
Q 028128           40 AQSSVKADIYRLFGRERPVHQVFG-----GGKPADVFLWRNKKISAGVLGGATAIWVLFE   94 (213)
Q Consensus        40 ~~~~~~~~~~rlfgr~~~vh~~LG-----GGkvADvlLWRdkk~Sg~VL~~~t~iw~LFe   94 (213)
                      ++.+++.+..|+-.=-.-|-.++|     |.++..++-|||+..|+....+..++-+.+.
T Consensus        53 ~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly  112 (156)
T PF08372_consen   53 PPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLY  112 (156)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHH
Confidence            455677777777643334666676     7899999999999999988877765444333

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=85.93  E-value=8.8  Score=39.12  Aligned_cols=109  Identities=16%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             ccceeeeccCcchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhcc--------CCCCCCcc--c
Q 028128           67 PADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKK--------APPCIPEV--H  136 (213)
Q Consensus        67 vADvlLWRdkk~Sg~VL~~~t~iw~LFel~~ysllSlv~~illl~L~~lFlws~~~~~lnk--------s~p~iP~v--~  136 (213)
                      .-++..|+||.+|.++++..+.+ +.=+|.+|-+-++     ++.+++..+|.+-..-.+|        .||+--.+  .
T Consensus       506 ~~~l~~We~P~kt~~Fl~~~~~i-I~r~wl~Y~~p~~-----Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEqi  579 (683)
T PF04842_consen  506 LQKLASWEEPLKTLVFLALFLYI-IYRGWLGYIFPAF-----LLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQI  579 (683)
T ss_pred             HHHHhhccCcchhHHHHHHHHHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHHH
Confidence            44678999999999999887754 4456888865433     2333334456433322222        12222111  1


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHH
Q 028128          137 LPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIH  181 (213)
Q Consensus       137 lsee~v~~~a~~l~~~iN~~l~~lr~Ia~gkDl~~flkvi~~Lwv  181 (213)
                      +.-..+-.-++......|=++-.+|.|.+-+..+..-+|++.|-.
T Consensus       580 lalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~  624 (683)
T PF04842_consen  580 LALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLG  624 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            222222334566777889999999999999999998888877766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.57
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	97.91

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.57  E-value=7.5e-09  Score=76.43  Aligned_cols=60  Identities=22%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             HH-HHHHHHhhhccCCCCCC-------ccccChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHH
Q 028128          115 LF-LWANAHTFIKKAPPCIP-------EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLM  174 (213)
Q Consensus       115 lF-lws~~~~~lnks~p~iP-------~v~lsee~v~~~a~~l~~~iN~~l~~lr~Ia~gkDl~~flk  174 (213)
                      .| +|.++.+.++|++..+|       |+.||+|.++++++.+...+|.++..+|++++++|+.+|+|
T Consensus        12 sfRiYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           12 GMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             -CTHHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            44 89999999999999999       99999999999999999999999999999999999999875

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=97.91  E-value=1.3e-07  Score=66.28  Aligned_cols=51  Identities=22%  Similarity=0.204  Sum_probs=47.2

Q ss_pred             HHHHHhhhccCCCCCC-------ccccChHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 028128          118 WANAHTFIKKAPPCIP-------EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRD  168 (213)
Q Consensus       118 ws~~~~~lnks~p~iP-------~v~lsee~v~~~a~~l~~~iN~~l~~lr~Ia~gkD  168 (213)
                      |.++.+.++|++..+|       |+.||+|.++++++.+..++|.++..+|++++++|
T Consensus         3 Yk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A            3 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             CCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             HHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            4566788899998999       99999999999999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00