Citrus Sinensis ID: 028145

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVEDDDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM
Secondary Structure (PSIPRED)
ccEEEEEccEEcccccccccccEEEEEccccccccccEEcccccEEEEcccccccccccccHHHHccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEEEEccccccccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccHHHHHHHHHcccccccccEEEcccccEEEEcccccccccEEEccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHccccccccccccccccccccccccccccccccccccEEEEEEcccccHHEEEEEEcccccccccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
mllavegggffsssasgyskGLTLLFLgqkndddkpmrvspwnqyqlvdqepdpdpdlQLASAAKNRlsrgcasfvcfgrasagpdspshlkvgpaqnqdvspaslgldkrldrsidvedddgnVVKLSLKsslkkpsnsdsvpvqnVIEHEHDLLsekgndiaghterrkvqwTDTCGSELaeirefepsemggsddefdngierscsctim
Flexible Loop (DISEMBL)
mllavegggffsssasgysKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDrsidvedddgnVVKLSlksslkkpsnsdsvpvqNVIEHEHDLlsekgndiaghterrkvqwtdtCGSELAeirefepsemggsddefdngierscsctim
Low Complexity Region (SEG)
MLLAVEgggffsssasgyskgLTLLFLGQKNDDDKPMRVSPWNQYqlvdqepdpdpdlqlASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVEDDDGNvvklslksslkkpsnsdsvPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM
Disordered region (IsUnstruct)
*****************YSKGLTLLFLG*****************************************RGCASFVCFG*********************************************************************************************QWTDTC***********************************
Disordered Region (DISOPRED)
*LLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPD****************CASFVCFGR*******************************************************************************************VQWTDTCGSELAEIREF*************NGIERSCSCTIM
Disordered Region (DISEMBL)
MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVEDDDGNVVKLSLK************PVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM
Disordered Region (DISPRO)
MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPDS*******************************************************************************TERRKVQWTDTCGSELAEIREFEP******DD*F*NGIERSCSCTIM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVEDDDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
255566690	206	conserved hypothetical protein [Ricinus	0.967	1.0	0.737	2e-79
224085173	201	predicted protein [Populus trichocarpa]	0.873	0.925	0.709	2e-65
359493155	205	PREDICTED: uncharacterized protein LOC10	0.962	1.0	0.694	5e-64
255632340	209	unknown [Glycine max]	0.943	0.961	0.643	1e-63
224062860	189	predicted protein [Populus trichocarpa]	0.854	0.962	0.694	7e-61
357443561	206	hypothetical protein MTR_1g098260 [Medic	0.924	0.956	0.608	5e-60
18395162	216	uncharacterized protein [Arabidopsis tha	0.981	0.967	0.572	1e-55
297845306	214	hypothetical protein ARALYDRAFT_889791 [	0.971	0.967	0.563	5e-54
2505872	196	hypothetical protein [Arabidopsis thalia	0.873	0.948	0.568	1e-46
297851836	187	hypothetical protein ARALYDRAFT_313917 [	0.868	0.989	0.483	9e-39

>gi|255566690|ref|XP_002524329.1| conserved hypothetical protein [Ricinus communis] gi|223536420|gb|EEF38069.1| conserved hypothetical protein [Ricinus communis]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/213 (73%), Positives = 175/213 (82%), Gaps = 7/213 (3%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGGFFSSSASGYSKGLTLL LGQ+++D KPMRV+PWNQYQLV+ EPDPD  LQL
Sbjct: 1   MLLAVEGGGFFSSSASGYSKGLTLLLLGQRHED-KPMRVAPWNQYQLVENEPDPD--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVED 120
           AS  KNRLSRGCASFVCFGRASAG DSPS LKVGPAQ QDV P  L  DK  D + ++E 
Sbjct: 58  ASL-KNRLSRGCASFVCFGRASAGLDSPSPLKVGPAQQQDVLPDPLVADKDKDNTTELEG 116

Query: 121 DDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGS 180
           D+ NV ++ LKSSLKKP+NS  VPV+N   ++H+ L EKG++I GH ERRKVQWTD CGS
Sbjct: 117 DN-NVRRVMLKSSLKKPTNSIPVPVENA--NQHNTLGEKGSNIPGHAERRKVQWTDVCGS 173

Query: 181 ELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM 213
           ELAEIREFEPSE  GSDDEFDN  ERSCSC IM
Sbjct: 174 ELAEIREFEPSETAGSDDEFDNAAERSCSCVIM 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085173|ref|XP_002307512.1| predicted protein [Populus trichocarpa] gi|222856961|gb|EEE94508.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/193 (70%), Positives = 157/193 (81%), Gaps = 7/193 (3%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGGFFSSSASGYSKGLTLL LGQK++D KPMRV+PWNQYQLVDQEPD D  LQL
Sbjct: 1   MLLAVEGGGFFSSSASGYSKGLTLLLLGQKHED-KPMRVTPWNQYQLVDQEPDFD--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVED 120
           AS  KNRLSRGCASFVCFGRASAG +SPS LKVGPAQ +DV P  L  DK  D + ++E 
Sbjct: 58  ASL-KNRLSRGCASFVCFGRASAGLESPSPLKVGPAQQKDVLPDPLVADKGKDLTTELEG 116

Query: 121 DDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGS 180
           D+ N +K++L+SSLKK S S  VPV++  + E   L++KG+DI GHTERRKVQWTD CGS
Sbjct: 117 DN-NAIKVTLRSSLKKTSKSIPVPVEDANQSEP--LNDKGSDIPGHTERRKVQWTDVCGS 173

Query: 181 ELAEIREFEPSEM 193
           ELAEIREFEP  +
Sbjct: 174 ELAEIREFEPRSL 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493155|ref|XP_003634525.1| PREDICTED: uncharacterized protein LOC100854917 [Vitis vinifera] gi|296081214|emb|CBI18240.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 148/213 (69%), Positives = 161/213 (75%), Gaps = 8/213 (3%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGGFFSSSASGY+KGLTLL LGQKN++ KPMRVSPWNQYQLVDQE D D  LQL
Sbjct: 1   MLLAVEGGGFFSSSASGYTKGLTLLLLGQKNEE-KPMRVSPWNQYQLVDQESDTD--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVED 120
           AS  KNRLSRGCASFVCFGRASAG + PS LKVGP Q QD  P     DK  D + D   
Sbjct: 58  ASG-KNRLSRGCASFVCFGRASAGLEVPSPLKVGPVQQQDGLPGPPISDKGKDHTTD-HG 115

Query: 121 DDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGS 180
           DD N   + LKSSLKKP NS  +PV    ++E + L E  +DI G TERRKVQWTD CG 
Sbjct: 116 DDNNERDVPLKSSLKKPFNS--IPVSGG-DNECEPLGETCSDIPGCTERRKVQWTDACGR 172

Query: 181 ELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM 213
           EL EI+EFEPSE+G SDDEFDNG ERSCSC IM
Sbjct: 173 ELVEIKEFEPSEVGESDDEFDNGSERSCSCAIM 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255632340|gb|ACU16528.1| unknown [Glycine max]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 137/213 (64%), Positives = 159/213 (74%), Gaps = 12/213 (5%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGG FS+SASGY+KGL+LL LGQ+N+D KPMRV+PWNQYQLVDQE DP+  LQL
Sbjct: 1   MLLAVEGGGLFSASASGYTKGLSLLLLGQRNED-KPMRVAPWNQYQLVDQESDPE--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVED 120
           AS  KNRLSRGCASFVCFGR SAG D+PS  KVGPAQ  DVSP +L  +K  D S  V+D
Sbjct: 58  AST-KNRLSRGCASFVCFGRTSAGLDTPSPPKVGPAQQHDVSPGTLVSNKGKDPSAHVDD 116

Query: 121 DDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDI---AGHTERRKVQWTDT 177
           +  N  K++LKSS+KKP  S  +PV+   EHE    +  G  I    G  ER+KVQWTD 
Sbjct: 117 ESDN-RKVTLKSSIKKPQISKPIPVEAANEHE----ASGGQGICTPGGQPERKKVQWTDN 171

Query: 178 CGSELAEIREFEPSEMGGSDDEFDNGIERSCSC 210
           CGSEL EIREFEPSE+ GSDDEFD+G +R   C
Sbjct: 172 CGSELVEIREFEPSEVDGSDDEFDSGNDRLVLC 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062860|ref|XP_002300906.1| predicted protein [Populus trichocarpa] gi|222842632|gb|EEE80179.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (609), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 132/190 (69%), Positives = 151/190 (79%), Gaps = 8/190 (4%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGGFFSSSASGYSKGLTLL LGQK++D KPMRV+PWNQYQLVDQEPD D  LQL
Sbjct: 1   MLLAVEGGGFFSSSASGYSKGLTLLLLGQKHED-KPMRVTPWNQYQLVDQEPDSD--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVED 120
           AS  KNRLS GCASF+CFGRASA  +SPS LKVGPAQ QDV P  L  D+  D + ++E 
Sbjct: 58  ASL-KNRLSHGCASFICFGRASAH-ESPSPLKVGPAQQQDVLPDPLVADREKDLTTELEV 115

Query: 121 DDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGS 180
           D+    K++LKS+LKK S    VPV++V + E   L+ +G+DI GHTERRKVQWTD CGS
Sbjct: 116 DN-YARKITLKSNLKKASKRIPVPVEDVKQSEP--LNGQGSDIPGHTERRKVQWTDVCGS 172

Query: 181 ELAEIREFEP 190
           ELAEIREFEP
Sbjct: 173 ELAEIREFEP 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443561|ref|XP_003592058.1| hypothetical protein MTR_1g098260 [Medicago truncatula] gi|355481106|gb|AES62309.1| hypothetical protein MTR_1g098260 [Medicago truncatula]

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 135/222 (60%), Positives = 159/222 (71%), Gaps = 25/222 (11%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           ML AVEGGGFFS+SASGYSKGL+LL LGQ+N+D KPMRV+PWN YQLV QE DP   LQL
Sbjct: 1   MLFAVEGGGFFSASASGYSKGLSLLLLGQRNED-KPMRVAPWNHYQLVVQESDPQ--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVED 120
           A   KNRLSRGCASFVCFGR SAGPD+PS LKVGP Q  DVSP       RL  S D +D
Sbjct: 58  A-PTKNRLSRGCASFVCFGRTSAGPDTPSPLKVGPTQQHDVSP-------RLPVSNDGKD 109

Query: 121 -----DDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHE----HDLLSEKGNDIAGHTERRK 171
                D+ + +K++LKSS+++P ++ SV V+   E E    H + +          ERR+
Sbjct: 110 PSHIDDNNDGIKVTLKSSIRRPHSNKSVSVEATNEQEASGGHVVFTP-----GDQAERRR 164

Query: 172 VQWTDTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM 213
           VQWTD CGSEL EIREFEPSE+ GSDDE+DNG ER+CSC IM
Sbjct: 165 VQWTDACGSELVEIREFEPSEVDGSDDEYDNGNERTCSCAIM 206

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395162|ref|NP_564181.1| uncharacterized protein [Arabidopsis thaliana] gi|79318389|ref|NP_001031081.1| uncharacterized protein [Arabidopsis thaliana] gi|21618018|gb|AAM67068.1| unknown [Arabidopsis thaliana] gi|27754683|gb|AAO22785.1| unknown protein [Arabidopsis thaliana] gi|28394087|gb|AAO42451.1| unknown protein [Arabidopsis thaliana] gi|332192167|gb|AEE30288.1| uncharacterized protein [Arabidopsis thaliana] gi|332192168|gb|AEE30289.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/220 (57%), Positives = 157/220 (71%), Gaps = 11/220 (5%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGG FS+SASGYSKGLTLLF G K D D+PMRV PWN YQ+VDQEP+ DP LQL
Sbjct: 1   MLLAVEGGGLFSASASGYSKGLTLLFSGDK-DVDRPMRVVPWNHYQVVDQEPEADPVLQL 59

Query: 61  ASAAKNRLSRGCA-SFVCFGRASAGPDSPSHLKVGPAQNQ--DVSPASLGLDKRLDRSID 117
            S  KNR+SRGCA SF CFG ASAG ++PS LKV P Q Q  ++S     +         
Sbjct: 60  DSI-KNRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQQHREISSPESVVVVSEKGKDQ 118

Query: 118 V-EDDDGN---VVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQ 173
           + E D+G+     KLSL+SSLK+PS ++S  ++++ E+E   LS  G+D+ G   RRKVQ
Sbjct: 119 ISEADNGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYET--LSVDGSDLTGDMARRKVQ 176

Query: 174 WTDTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM 213
           W D CGSEL ++REFEPSEMG SD+E++ G +R+CSC IM
Sbjct: 177 WPDACGSELTQVREFEPSEMGLSDEEWEVGRQRTCSCVIM 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845306|ref|XP_002890534.1| hypothetical protein ARALYDRAFT_889791 [Arabidopsis lyrata subsp. lyrata] gi|297336376|gb|EFH66793.1| hypothetical protein ARALYDRAFT_889791 [Arabidopsis lyrata subsp. lyrata]

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 124/220 (56%), Positives = 158/220 (71%), Gaps = 13/220 (5%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGG FS+SASGYSKGLTLLF G K D D+PMRV PWN YQ+VDQE DP   LQL
Sbjct: 1   MLLAVEGGGLFSASASGYSKGLTLLFSGDK-DGDRPMRVVPWNHYQVVDQEADPV--LQL 57

Query: 61  ASAAKNRLSRGCA-SFVCFGRASAGPDSPSHLKVGPAQ-NQDVSPASLGLDKRLDRSID- 117
            S  KNR+SRGCA SF CFG ASAG ++PS LKV P Q ++++S     +    ++  D 
Sbjct: 58  DSI-KNRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQHREISSPESAVVVVSEKGKDQ 116

Query: 118 -VEDDDGN---VVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQ 173
             E D+G+     KLSL+SSLK+PS ++S  ++++ E+E   L+  G+D+ G   RRKVQ
Sbjct: 117 ITEADNGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYET--LTVDGSDLTGDMARRKVQ 174

Query: 174 WTDTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM 213
           W D CGSEL ++REFEPSEMG SD+E++ G +R+CSC IM
Sbjct: 175 WPDACGSELTQVREFEPSEMGLSDEEWEVGRQRTCSCVIM 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2505872|emb|CAA72910.1| hypothetical protein [Arabidopsis thaliana]

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/197 (56%), Positives = 138/197 (70%), Gaps = 11/197 (5%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGG FS+SASGYSKGLTLLF G K D D+PMRV PWN YQ+VDQEP+ DP LQL
Sbjct: 1   MLLAVEGGGLFSASASGYSKGLTLLFSGDK-DVDRPMRVVPWNHYQVVDQEPEADPVLQL 59

Query: 61  ASAAKNRLSRGC-ASFVCFGRASAGPDSPSHLKVGPAQNQ--DVSPASLGLDKRLDRSID 117
            S  KNR+SRGC ASF CFG ASAG ++PS LKV P Q Q  ++S     +         
Sbjct: 60  DS-IKNRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQQHREISSPESVVVVSEKGKDQ 118

Query: 118 V-EDDDGN---VVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQ 173
           + E D+G+     KLSL+SSLK+PS ++S  ++++ E+E   LS  G+D+ G   RRKVQ
Sbjct: 119 ISEADNGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYE--TLSVDGSDLTGDMARRKVQ 176

Query: 174 WTDTCGSELAEIREFEP 190
           W D CGSEL ++REFEP
Sbjct: 177 WPDACGSELTQVREFEP 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851836|ref|XP_002893799.1| hypothetical protein ARALYDRAFT_313917 [Arabidopsis lyrata subsp. lyrata] gi|297339641|gb|EFH70058.1| hypothetical protein ARALYDRAFT_313917 [Arabidopsis lyrata subsp. lyrata]

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 104/215 (48%), Positives = 130/215 (60%), Gaps = 30/215 (13%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSP--WNQYQLVDQEPDPDPDL 58
           ML A EGGGFFSSSASGYS GL LL LGQKN+  KP++VS   WN Y LV +E D    L
Sbjct: 1   MLFAAEGGGFFSSSASGYSNGLALLLLGQKNEQ-KPIKVSSSQWNHYHLVVEESDTGFRL 59

Query: 59  QLASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDV 118
               ++KN LS  C S +CFGR S   +SPS ++    +++ V+P+             V
Sbjct: 60  D---SSKNWLSCACTSLICFGRKSEKLESPSDIR--GKKDEAVAPS-------------V 101

Query: 119 EDDDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTC 178
           E +     + +LKSSLKK S SD V          D +S  G  +  HT+RRKVQW DTC
Sbjct: 102 EYNCEVTNRFALKSSLKKRSFSDVVIGD-------DDVSRDG--VVDHTDRRKVQWPDTC 152

Query: 179 GSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM 213
           G E+AE+REFEPSE+  SDDEF +G  +SC CTIM
Sbjct: 153 GIEIAEVREFEPSEVDESDDEFHHGSGKSCMCTIM 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
TAIR|locus:2199660	216	AT1G22790 "AT1G22790" [Arabido	0.990	0.976	0.422	3.1e-35
TAIR|locus:2009081	182	AT1G34010 "AT1G34010" [Arabido	0.272	0.318	0.583	4.4e-25
TAIR|locus:1006230777	120	AT1G55475 "AT1G55475" [Arabido	0.197	0.35	0.5	1.1e-07
TAIR|locus:2092840	172	AT3G13480 "AT3G13480" [Arabido	0.633	0.784	0.310	3.3e-07
TAIR|locus:2051144	98	AT2G33390 "AT2G33390" [Arabido	0.192	0.418	0.466	2.4e-05

TAIR|locus:2199660 AT1G22790 "AT1G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 92/218 (42%), Positives = 118/218 (54%)

Query:     1 MLLAVEXXXXXXXXXXXXXXXLTLLFLGQKNDDDKPMRVSPWNQYXXXXXXXXXXXXXXX 60
             MLLAVE               LTLLF G K D D+PMRV PWN Y               
Sbjct:     1 MLLAVEGGGLFSASASGYSKGLTLLFSGDK-DVDRPMRVVPWNHYQVVDQEPEADPVLQL 59

Query:    61 ASAAKNRLSRGCA-SFVCFGRASAGPDSPSHLKVGPAQNQ--DVS-PASLGLDKRLDRSI 116
              S  KNR+SRGCA SF CFG ASAG ++PS LKV P Q Q  ++S P S+ +     +  
Sbjct:    60 DSI-KNRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQQHREISSPESVVVVSEKGKDQ 118

Query:   117 DVEDDDGNXXXXXXXXXXXXXXXXXXXPVQNVIE-HEHDLLSEKGNDIAGHTERRKVQWT 175
               E D+G+                     +++ +  E++ LS  G+D+ G   RRKVQW 
Sbjct:   119 ISEADNGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYETLSVDGSDLTGDMARRKVQWP 178

Query:   176 DTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM 213
             D CGSEL ++REFEPSEMG SD+E++ G +R+CSC IM
Sbjct:   179 DACGSELTQVREFEPSEMGLSDEEWEVGRQRTCSCVIM 216

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2009081 AT1G34010 "AT1G34010" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
 Identities = 35/60 (58%), Positives = 44/60 (73%)

Query:   154 DLLSEKGNDIAGHTERRKVQWTDTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM 213
             D +S  G  +  H +RRKVQW DTCG E+AE+REFEPSE+  S+DEF +G  +SC CTIM
Sbjct:   125 DDVSRDG--VVDHIDRRKVQWPDTCGIEIAEVREFEPSEVDESEDEFHHGSGKSCMCTIM 182

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:1006230777 AT1G55475 "AT1G55475" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query:   168 ERRKVQWTDTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM 213
             E++KVQW D  G ELAEIREFEPS+    +D+ D+   ++C C I+
Sbjct:    79 EKKKVQWVDVIGKELAEIREFEPSD----EDDIDSDRGKTCVCIIL 120

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092840 AT3G13480 "AT3G13480" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 49/158 (31%), Positives = 68/158 (43%)

Query:    72 CASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVEDDDGNXXXXXXX 131
             C SF+CF + S    +   LK+     Q VS ++  +D R D   D +DDD +       
Sbjct:    22 CPSFICFCKPSPHIYASGSLKLENTFPQ-VSSSTTVVDDR-DHD-DNDDDDAHVEEEEVV 78

Query:   132 XXXXXXXXXXXXPVQNVI-----EHEHDL---------LSEKGNDIA--GHTERRKVQWT 175
                           ++       E E  L         L ++  D A  G  E++KVQW 
Sbjct:    79 VDHVDGLLTEVVREEDCALEGKKEEEESLSNGEILKSSLKKEVLDSADGGRKEKKKVQWV 138

Query:   176 DTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM 213
             D  G ELAEIREFE SE    D  +D   ++SC C I+
Sbjct:   139 DLMGKELAEIREFESSEE--EDVRYDG--DQSCVCVIL 172

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051144 AT2G33390 "AT2G33390" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 21/45 (46%), Positives = 29/45 (64%)

Query:   169 RRKVQWTDTCGSELAEIREFEPSEMGGSDDEFDNGIERSCSCTIM 213
             +R VQW D  G  LAE+  +EPSE+  ++D+ D+    SC CTIM
Sbjct:    58 KRTVQWNDIKGDNLAEVLVYEPSEVSDTEDD-DSD---SCICTIM 98


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.132   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       164   0.00088  107 3  11 23  0.44    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.58u 0.09s 13.67t   Elapsed:  00:00:01
  Total cpu time:  13.58u 0.09s 13.67t   Elapsed:  00:00:01
  Start:  Fri May 10 04:41:40 2013   End:  Fri May 10 04:41:41 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V001134 hypothetical protein (201 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00