Citrus Sinensis ID: 028154

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MDKFLLNARHALHCLVSGCDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHcHHHHHHHHHHccccccEcccccHEEEEcHccccc
Coil and Loop (DISEMBL)
MDKFLLNARHALHCLvsgcdggdlldgddgsvwggsneefdietDLDREWQRRRDQFHTIgyrdgllagketsaqegfnmgfkesfhsgynwglVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAveqsegaeggsnvtglqnqssdrsRLENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Flexible Loop (DISEMBL)
MDKFLLNARHALHCLVSGCDGGDLLDGDDGSVWGGSneefdietdldrewQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVeqsegaeggsnvtglqnqssdRSRLENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Low Complexity Region (SEG)
MDKFLLNARHALHclvsgcdggdlldgddgsvwggsNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Disordered region (IsUnstruct)
***FLLNARHALHCLVSGCDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILT********************************FGELESIILETPAIQVHLEVQKYLVSLCND***
Disordered Region (DISOPRED)
**K****ARHALHCLVSGCDGGDLLDGDDGSVWG**********************FHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVC***************************************************************************************PAIQVHLEVQKYLVSLCNDI**
Disordered Region (DISEMBL)
MDKFLLNARHALHCLVSGCDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAV*************************ENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Disordered Region (DISPRO)
*DKFLLNARHALHCLVSGCDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTK***************************LENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKFLLNARHALHCLVSGCDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
Q9NRH1	226	Yae1 domain-containing pr	yes	no	0.347	0.327	0.415	1e-07

>sp|Q9NRH1|YAED1_HUMAN Yae1 domain-containing protein 1 OS=Homo sapiens GN=YAE1D1 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 27  GDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESF 86
           GD G V+   +EE D      REWQ    +    GYRDG+ AGK  + Q+GFN G+K+  
Sbjct: 14  GDKGDVF---DEEADESLLAQREWQSNMQRRVKEGYRDGIDAGKAVTLQQGFNQGYKKGA 70

Query: 87  HSGYNWGLVRGVTSALV 103
               N+G +RG  SAL+
Sbjct: 71  EVILNYGRLRGTLSALL 87

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
224057370	206	predicted protein [Populus trichocarpa]	0.835	0.864	0.666	9e-64
296082643	274	unnamed protein product [Vitis vinifera]	0.854	0.664	0.655	1e-62
225438299	219	PREDICTED: uncharacterized protein LOC10	0.863	0.840	0.648	1e-62
224072849	215	predicted protein [Populus trichocarpa]	0.854	0.846	0.668	2e-62
255544081	199	conserved hypothetical protein [Ricinus	0.807	0.864	0.670	2e-59
33945879	218	hypothetical protein [Lotus japonicus] g	0.854	0.834	0.586	9e-56
356545110	181	PREDICTED: uncharacterized protein LOC10	0.830	0.977	0.593	3e-53
356538735	213	PREDICTED: uncharacterized protein LOC10	0.746	0.746	0.635	2e-51
388509018	208	unknown [Medicago truncatula]	0.746	0.764	0.597	4e-49
357473421	289	hypothetical protein MTR_4g071040 [Medic	0.746	0.550	0.597	5e-49

>gi|224057370|ref|XP_002299217.1| predicted protein [Populus trichocarpa] gi|222846475|gb|EEE84022.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 120/180 (66%), Positives = 145/180 (80%), Gaps = 2/180 (1%)

Query: 22  GDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMG 81
           GDL   DDG +W  S+EE D ++DLDREWQRR DQFHTIGYRDGL++GKE SAQEGFN G
Sbjct: 29  GDL--QDDGPLWDVSDEELDRDSDLDREWQRRHDQFHTIGYRDGLISGKEASAQEGFNNG 86

Query: 82  FKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKL 141
           FK+S  +GYNWG+ RGVTSAL CLP+ LKE LIE QEKRNKFQ +YE+VHS+STTDALK 
Sbjct: 87  FKQSVLAGYNWGVARGVTSALACLPDALKERLIEDQEKRNKFQGVYETVHSVSTTDALKF 146

Query: 142 FHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQ 201
           FHDD+L KK  EQSE ++  SNV+G+   SS  S LEN+ GEL+S++LE+PAI+ HL V+
Sbjct: 147 FHDDVLRKKEEEQSEHSKASSNVSGMSKDSSGCSHLENYVGELQSLLLESPAIKSHLSVK 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082643|emb|CBI21648.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/183 (65%), Positives = 145/183 (79%), Gaps = 1/183 (0%)

Query: 19  CDG-GDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEG 77
           CD  GD L  +D S+  GS+E+ D  +DLDREWQRRRDQFHTIGYRDG++AGKE SAQEG
Sbjct: 90  CDSNGDDLWHEDASLGDGSDEDLDKVSDLDREWQRRRDQFHTIGYRDGVIAGKEASAQEG 149

Query: 78  FNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTD 137
           FN+GFKES   GY WGLVRGVTSAL CLP+ LKE L+ETQE RNKFQ LY++VHSLST +
Sbjct: 150 FNIGFKESVFVGYKWGLVRGVTSALACLPDGLKEKLVETQEARNKFQCLYKTVHSLSTDN 209

Query: 138 ALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVH 197
           ALKLFHD IL  K+VEQ+   E  SNV  +Q++SSD + LENHF EL+S+I E+P ++VH
Sbjct: 210 ALKLFHDGILKNKSVEQTGNVESSSNVADMQDRSSDSNVLENHFEELQSLIRESPTVKVH 269

Query: 198 LEV 200
           L +
Sbjct: 270 LTI 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438299|ref|XP_002270204.1| PREDICTED: uncharacterized protein LOC100262774 [Vitis vinifera]

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/185 (64%), Positives = 146/185 (78%), Gaps = 1/185 (0%)

Query: 19  CDG-GDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEG 77
           CD  GD L  +D S+  GS+E+ D  +DLDREWQRRRDQFHTIGYRDG++AGKE SAQEG
Sbjct: 35  CDSNGDDLWHEDASLGDGSDEDLDKVSDLDREWQRRRDQFHTIGYRDGVIAGKEASAQEG 94

Query: 78  FNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTD 137
           FN+GFKES   GY WGLVRGVTSAL CLP+ LKE L+ETQE RNKFQ LY++VHSLST +
Sbjct: 95  FNIGFKESVFVGYKWGLVRGVTSALACLPDGLKEKLVETQEARNKFQCLYKTVHSLSTDN 154

Query: 138 ALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVH 197
           ALKLFHD IL  K+VEQ+   E  SNV  +Q++SSD + LENHF EL+S+I E+P ++VH
Sbjct: 155 ALKLFHDGILKNKSVEQTGNVESSSNVADMQDRSSDSNVLENHFEELQSLIRESPTVKVH 214

Query: 198 LEVQK 202
           L + +
Sbjct: 215 LTIDQ 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072849|ref|XP_002303911.1| predicted protein [Populus trichocarpa] gi|222841343|gb|EEE78890.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 123/184 (66%), Positives = 147/184 (79%), Gaps = 2/184 (1%)

Query: 22  GDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMG 81
           GDL D D GS+W  S EE D E+DLDREWQRR DQFHTIGYRDGL+AGKE SAQEGFN+G
Sbjct: 29  GDLQD-DGGSLWDDSVEELDRESDLDREWQRRHDQFHTIGYRDGLIAGKEDSAQEGFNVG 87

Query: 82  FKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKL 141
           FK+S   GYNWGLVRGVTS + CLP++LKE LIETQEKRNKFQ LYESVHS+ST DALK 
Sbjct: 88  FKQSVLVGYNWGLVRGVTSVVACLPDDLKEKLIETQEKRNKFQGLYESVHSISTVDALKF 147

Query: 142 FHDDILTKKAVEQSEGAEGGSNVTGL-QNQSSDRSRLENHFGELESIILETPAIQVHLEV 200
           FHDDIL KKA+EQ E  +  S+V  + ++ SS  S LEN+ GEL+S++L++P I+ HL V
Sbjct: 148 FHDDILRKKAMEQRELEKASSDVARMNKDDSSCCSNLENYVGELQSLLLDSPTIKSHLSV 207

Query: 201 QKYL 204
           ++ L
Sbjct: 208 KQLL 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544081|ref|XP_002513103.1| conserved hypothetical protein [Ricinus communis] gi|223548114|gb|EEF49606.1| conserved hypothetical protein [Ricinus communis]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/173 (67%), Positives = 138/173 (79%), Gaps = 1/173 (0%)

Query: 28  DDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFH 87
           +DG+ WG S+EE    +DLDREW+RRRDQFHTIGYRDGLLAGKE  AQEGFN GFK+S  
Sbjct: 27  EDGAFWGDSDEELHKSSDLDREWERRRDQFHTIGYRDGLLAGKEAIAQEGFNAGFKQSVL 86

Query: 88  SGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDIL 147
            G++WGLVRGVTSA  CLP+ LKE LIET EKRNKF +LYESVHSLSTTDALKLF+DDI+
Sbjct: 87  LGFDWGLVRGVTSAFACLPDGLKEKLIETPEKRNKFLALYESVHSLSTTDALKLFYDDIV 146

Query: 148 TKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEV 200
           +KKA EQSE A   S+  GLQ + SD   L N+ GEL+S+++E+PAI  H+ V
Sbjct: 147 SKKAAEQSEHATASSDTAGLQYKISD-CILGNYGGELQSLLIESPAIDSHIRV 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33945879|emb|CAE45590.1| hypothetical protein [Lotus japonicus] gi|164605520|dbj|BAF98586.1| CM0216.520.nc [Lotus japonicus]

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 108/184 (58%), Positives = 139/184 (75%), Gaps = 2/184 (1%)

Query: 19  CDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGF 78
           CD  D   G DGSVW  S+++ +  +DL+REWQRR DQFHTIGYRDGL+AGKE SAQEGF
Sbjct: 37  CDDSDF--GLDGSVWDDSDDKLERSSDLNREWQRRHDQFHTIGYRDGLIAGKEASAQEGF 94

Query: 79  NMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDA 138
           N+GFK+S H+G+NWG+VRGV SA   LP++LKE L+ET E+R++FQ L+ESVHSLSTTDA
Sbjct: 95  NIGFKQSVHAGFNWGVVRGVASAFAYLPDKLKERLVETLERRDEFQQLHESVHSLSTTDA 154

Query: 139 LKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHL 198
           L+LFH+D   ++A  QSE  E    + GLQ Q+S  S L N+ G+LES+I ++P+I  HL
Sbjct: 155 LRLFHEDFKAQEASGQSEHVEDSCGIAGLQEQASHVSHLTNYSGKLESLIHDSPSIDSHL 214

Query: 199 EVQK 202
              K
Sbjct: 215 PEPK 218

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545110|ref|XP_003540988.1| PREDICTED: uncharacterized protein LOC100814352 [Glycine max]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 135/177 (76%)

Query: 26  DGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKES 85
           DGDD S+W  S+++ +  +DLDREWQRR DQFHTIGYRDGL+AGKE +AQEGFN GFK+S
Sbjct: 5   DGDDLSLWDESDDKLESSSDLDREWQRRHDQFHTIGYRDGLIAGKEAAAQEGFNFGFKQS 64

Query: 86  FHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDD 145
              G++WG+VRGVTSA   LP++LKE LIETQ+KRN+   LYESVHSLSTTD L+LF ++
Sbjct: 65  VLDGHSWGVVRGVTSAFSHLPHQLKERLIETQKKRNELLGLYESVHSLSTTDCLRLFSEE 124

Query: 146 ILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQK 202
           I  ++A+EQSE +E   +  GLQ Q S  S L N+  +LES+I ++PAI +HL   K
Sbjct: 125 IKAQEALEQSEHSEVSHHTAGLQEQPSHGSELRNYREQLESLIRDSPAIDIHLPKPK 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538735|ref|XP_003537856.1| PREDICTED: uncharacterized protein LOC100783658 [Glycine max]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/159 (63%), Positives = 124/159 (77%)

Query: 44  TDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 103
           +DLDREWQRR DQFHTIGYRDGL+A KE SAQEGFN+GFK+S   GY+WG+VRGVTSA  
Sbjct: 55  SDLDREWQRRHDQFHTIGYRDGLIAAKEASAQEGFNIGFKQSVLDGYSWGVVRGVTSAFS 114

Query: 104 CLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSN 163
            LP +LK  LIETQEKRN+FQ LYESVHSLSTTDAL+LF  +I  ++A+EQSE +E   +
Sbjct: 115 HLPRQLKARLIETQEKRNEFQGLYESVHSLSTTDALRLFSKEIKAQEALEQSEHSEVSHH 174

Query: 164 VTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQK 202
             GLQ Q S  S+L ++ G+LES++ + PAI +HL   K
Sbjct: 175 TAGLQEQPSHGSQLRSYRGQLESLLCDFPAIDIHLPEPK 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509018|gb|AFK42575.1| unknown [Medicago truncatula]

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 123/159 (77%)

Query: 44  TDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 103
           +DLDREWQRRRDQFHT GYR+GL+A KE SAQEGFN+GFK+S  +GY+WG+VRG +SA  
Sbjct: 50  SDLDREWQRRRDQFHTSGYREGLIAAKEASAQEGFNIGFKQSVCAGYSWGVVRGASSAFA 109

Query: 104 CLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSN 163
            LP++LKE L+ET EKRN+FQ LYESV SLSTTDAL+LFH+D   ++A++Q+E  +  S+
Sbjct: 110 NLPDQLKEKLVETLEKRNEFQGLYESVQSLSTTDALRLFHEDYKAQEALKQNEHGDVSSD 169

Query: 164 VTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQK 202
              LQ Q+S  S L  + G+LES+I ++PAI  HL   K
Sbjct: 170 TVSLQQQTSHNSPLIKYHGQLESLISDSPAIDSHLPEPK 208

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473421|ref|XP_003606995.1| hypothetical protein MTR_4g071040 [Medicago truncatula] gi|355508050|gb|AES89192.1| hypothetical protein MTR_4g071040 [Medicago truncatula]

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 123/159 (77%)

Query: 44  TDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 103
           +DLDREWQRRRDQFHT GYR+GL+A KE SAQEGFN+GFK+S  +GY+WG+VRG +SA  
Sbjct: 131 SDLDREWQRRRDQFHTSGYREGLIAAKEASAQEGFNIGFKQSVCAGYSWGVVRGASSAFA 190

Query: 104 CLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSN 163
            LP++LKE L+ET EKRN+FQ LYESV SLSTTDAL+LFH+D   ++A++Q+E  +  S+
Sbjct: 191 NLPDQLKEKLVETLEKRNEFQGLYESVQSLSTTDALRLFHEDYKAQEALKQNEHGDVSSD 250

Query: 164 VTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQK 202
              LQ Q+S  S L  + G+LES+I ++PAI  HL   K
Sbjct: 251 TVSLQQQTSHNSPLIKYHGQLESLISDSPAIDSHLPEPK 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
TAIR|locus:2009333	208	AT1G34570 "AT1G34570" [Arabido	0.760	0.778	0.442	2e-31
TAIR|locus:2009253	735	EMB2756 "EMBRYO DEFECTIVE 2756	0.380	0.110	0.380	8.9e-07
SGD|S000003828	141	YAE1 "Protein that forms a com	0.291	0.439	0.338	3.5e-05

TAIR|locus:2009333 AT1G34570 "AT1G34570" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 73/165 (44%), Positives = 111/165 (67%)

Query:    37 NEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVR 96
             +E++     LD E ++RR +FH+ GYRDG++ GKE  AQEG+N G+KES  +GY +G+VR
Sbjct:    44 DEDYSEARVLDNENEQRRVKFHSAGYRDGIVVGKEAIAQEGYNFGYKESVLAGYKFGIVR 103

Query:    97 GVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSE 156
             GV+SAL  LP E +E LI+ QE R KFQ L+ SVH+LST  A+K F++ + TK+  E+S 
Sbjct:   104 GVSSALAFLPVEFREKLIDEQETREKFQKLHSSVHALSTEVAMKQFYETLTTKQGEEKS- 162

Query:   157 GAEG--GSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLE 199
             G EG    +V+G  +  +  + L ++  EL S++ ++P I+V  +
Sbjct:   163 GEEGPDSCSVSGSCSGVNVTADLGSYVTELSSLLDKSPTIEVKFD 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009253 EMB2756 "EMBRYO DEFECTIVE 2756" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 8.9e-07, P = 8.9e-07
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query:    98 VTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQS-- 155
             + + L  LP+EL+E LI+ QE R KFQ L+  VH+LST  A+K F+  + TK+ +  S  
Sbjct:     1 MVNVLAFLPDELREKLIDEQETREKFQRLHSYVHALSTEVAMKRFYGALTTKEGISGSGV 60

Query:   156 -EGAEGGSNVTGLQNQSSDRSRLE 178
                ++ GS VT L +      ++E
Sbjct:    61 NATSDWGSYVTELSSLLEKSPKIE 84

GO:0005634 "nucleus" evidence=ISM

GO:0006672 "ceramide metabolic process" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

SGD|S000003828 YAE1 "Protein that forms a complex with Lto1p and Rli1p" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 102 (41.0 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query:    41 DIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTS 100
             D+ET+   +  + R+     GY DG+++ KE   QEGFN GF      G   G++ G+  
Sbjct:    14 DVETERSPDLVKLRENHSKRGYLDGIVSSKEEKLQEGFNDGFPTGAKLGKQVGIIMGILL 73

Query:   101 AL 102
              L
Sbjct:    74 GL 75


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       190   0.00091  110 3  11 22  0.49    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.61u 0.13s 20.74t   Elapsed:  00:00:01
  Total cpu time:  20.61u 0.13s 20.74t   Elapsed:  00:00:01
  Start:  Fri May 10 05:01:40 2013   End:  Fri May 10 05:01:41 2013

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IGI;IPI

GO:0006413 "translational initiation" evidence=IGI;IPI

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_I000107 hypothetical protein (206 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	213
pfam09811	39	pfam09811, Yae1_N, Essential protein Yae1, N termi	7e-09

>gnl|CDD|204317 pfam09811, Yae1_N, Essential protein Yae1, N terminal

 Score = 49.4 bits (119), Expect = 7e-09
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 61 GYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGV 98
          GYR+G+  GKE   QEGF+ G++E    G   G + G+
Sbjct: 1  GYREGIAEGKEEGLQEGFDEGYQEGAQLGLELGQLLGL 38

Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
KOG4774	190	consensus Uncharacterized conserved protein [Funct	99.96
KOG4595	139	consensus Uncharacterized conserved protein [Funct	99.48
PF09811	39	Yae1_N: Essential protein Yae1, N terminal; InterP	99.34
PRK13386	236	fliH flagellar assembly protein H; Provisional	98.01
PRK05687	246	fliH flagellar assembly protein H; Validated	97.85
PRK13386	236	fliH flagellar assembly protein H; Provisional	97.38
KOG4595	139	consensus Uncharacterized conserved protein [Funct	97.06
PRK05687	246	fliH flagellar assembly protein H; Validated	97.02
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	96.48
PF09811	39	Yae1_N: Essential protein Yae1, N terminal; InterP	96.0
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	94.04
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	93.08
PRK06669	281	fliH flagellar assembly protein H; Validated	90.92
KOG4774	190	consensus Uncharacterized conserved protein [Funct	88.71
PRK06669	281	fliH flagellar assembly protein H; Validated	84.51
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	80.08

>KOG4774 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.96  E-value=1.6e-28  Score=207.29  Aligned_cols=169  Identities=25%  Similarity=0.239  Sum_probs=141.4

Q ss_pred             CCCCCCCCCCccccchhhHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhhcCch-
Q 028154           29 DGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPN-  107 (213)
Q Consensus        29 dDDvwgs~Dee~~~~~~~~rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~lsal~~l~~-  107 (213)
                      +|+.| .+|++.+...+..+||++++++|.+.||||||.+||++.+|+|||+||++|+.+|+.+|.++|+++|++++++ 
T Consensus        14 ~d~~d-~SDeEsd~~~l~~~elq~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsall~~f~d   92 (190)
T KOG4774|consen   14 GDKGD-VSDEESDESLLAQRELQSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSALLSWFHD   92 (190)
T ss_pred             Ccccc-ccCchhHHHHhhcHHHHHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            34444 4555566556779999999999999999999999999999999999999999999999999999999998644 


Q ss_pred             hHH---hHhHHHHHHHHHHHHHHHHhhcCChHHHhhhhhhhhhhhhhhhcccCCC--CCCccccccccCcchhhhhhhHH
Q 028154          108 ELK---EMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAE--GGSNVTGLQNQSSDRSRLENHFG  182 (213)
Q Consensus       108 ~lk---~~l~~~q~kr~~L~~L~~sI~~ls~~d~L~~f~~~i~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~  182 (213)
                      +..   +.++..|+-+...+.|+.+|..+++...++-|++.|..+...+.+...+  +-+.-.+...+..-+-.+..+..
T Consensus        93 Ene~~~k~~IlkQe~~r~~e~l~khif~~n~~~h~~e~l~~It~k~~~~~~~~Ek~~~~s~d~~s~sgi~~s~~~~~~~~  172 (190)
T KOG4774|consen   93 ENENINKINILKQEVGRCEEYLLKHIFSINPPSHVVELLDSITDKDLCHVVPAEKKIDESKDEKSHSGIDCSYVECCRTQ  172 (190)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhhhcccccccccCCccccccCCCCCcceeeehhhhhH
Confidence            555   7789999999999999999999999999999999999998777665544  33323444555555557889999


Q ss_pred             HHHHHhhhCCCccccc
Q 028154          183 ELESIILETPAIQVHL  198 (213)
Q Consensus       183 ~l~slL~~sp~i~~~~  198 (213)
                      ++.++++.||.+-+..
T Consensus       173 e~~~~~~~spt~~~~~  188 (190)
T KOG4774|consen  173 EHAHSENPSPTWILEQ  188 (190)
T ss_pred             HHhhccCCCCceEeec
Confidence            9999999999987654

>KOG4595 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=9.7e-14  Score=113.88  Aligned_cols=124  Identities=18%  Similarity=0.225  Sum_probs=103.4

Q ss_pred             HHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhhcCchhHHhHhHHHHHHHHHHHHHHH
Q 028154           49 EWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYE  128 (213)
Q Consensus        49 Ew~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~lsal~~l~~~lk~~l~~~q~kr~~L~~L~~  128 (213)
                      +.-++++++.+.||+||+.+|.+++.-+||..|+.+||.+|..+|+|+|...+|.++-+.-+  ...+.+.++.|.+++.
T Consensus        12 ~Iv~lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~Gc~~l~~~~lhs~~--~~ks~~~lr~L~~~l~   89 (139)
T KOG4595|consen   12 DIVLLEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILGCVVLWQQLLHSPK--TRKSLRQLRSLISLLP   89 (139)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCc--hhcCHHHHHHHHHHHh
Confidence            35578999999999999999999999999999999999999999999999999988722221  2345577889999999


Q ss_pred             HhhcCChHHHhhhhhhhhhhhhhhhcccCCCCCCccccccccCcchhhhhhhHHHHHHHhhhCCCcccccchh
Q 028154          129 SVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQ  201 (213)
Q Consensus       129 sI~~ls~~d~L~~f~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~slL~~sp~i~~~~~~~  201 (213)
                      +++.+|..++.                        .+.+-.   ...++|.+.+++++|+..-|+.+++++.-
T Consensus        90 ~l~~~~~~~~~------------------------d~~~~~---~~nkir~~~~~~~~l~~~k~~~t~s~e~~  135 (139)
T KOG4595|consen   90 MLNDPPALDET------------------------DVQLIR---SKNKIRRKLKGSKSLLGAKPAPTNSVEHK  135 (139)
T ss_pred             ccCCCcccchH------------------------HHHHHH---HHHHHHHHHHHHHhcccCccCcccccccc
Confidence            99999888887                        232222   56799999999999999999988876643

>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1

Probab=99.34  E-value=8.4e-13  Score=86.85  Aligned_cols=39  Identities=46%  Similarity=0.963  Sum_probs=37.9

Q ss_pred             chHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHH
Q 028154           61 GYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVT   99 (213)
Q Consensus        61 GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~l   99 (213)
                      ||+||+.+|+++++|+|||.||++|+.+|+++|+++|++
T Consensus         1 GY~eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G~~   39 (39)
T PF09811_consen    1 GYREGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKGFA   39 (39)
T ss_pred             ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            899999999999999999999999999999999999974

The exact function has not been determined.

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=98.01  E-value=7.1e-05  Score=65.81  Aligned_cols=45  Identities=22%  Similarity=0.435  Sum_probs=26.1

Q ss_pred             hcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 028154           59 TIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV  103 (213)
Q Consensus        59 k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~lsal~  103 (213)
                      ..||.+|+..|-++++++||..||.+|..-|+.-|.-.|...+..
T Consensus        45 ~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~g~~   89 (236)
T PRK13386         45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQ   89 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666665555666666666666666666655555555433

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=97.85  E-value=0.00028  Score=61.48  Aligned_cols=47  Identities=32%  Similarity=0.639  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHH
Q 028154           47 DREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRG   97 (213)
Q Consensus        47 ~rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G   97 (213)
                      ..++..+++.    ||.+|+..|.+.+.++||..||.+|+.-|+.-|.-.|
T Consensus        58 ~~~~e~~~~~----a~~eG~~~G~~~G~~~G~~~G~~~G~~~G~~qg~~e~  104 (246)
T PRK05687         58 EEELEAIRQQ----AHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEG  104 (246)
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555    4555555555555555555555555555555554433

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=97.38  E-value=0.0021  Score=56.56  Aligned_cols=29  Identities=14%  Similarity=0.300  Sum_probs=16.0

Q ss_pred             hhhhhhHHHHHHHhhh-CCCcccccchhhH
Q 028154          175 SRLENHFGELESIILE-TPAIQVHLEVQKY  203 (213)
Q Consensus       175 ~~l~~~~~~l~slL~~-sp~i~~~~~~~~~  203 (213)
                      +.|-+.+++....|.. +..|.|+++..-|
T Consensus       145 ~~il~~v~eaL~~lp~~~~~v~I~vnP~D~  174 (236)
T PRK13386        145 QQILALVEETLAALPDDPEQLKVHLNPEEF  174 (236)
T ss_pred             HHHHHHHHHHHHhccccCCCeEEEECHHHH
Confidence            3455566666666654 3556666655443

>KOG4595 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.00071  Score=56.15  Aligned_cols=53  Identities=17%  Similarity=0.298  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 028154           48 REWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSA  101 (213)
Q Consensus        48 rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~lsa  101 (213)
                      -+|..+-. ....=|++|+.+|-+.++.+||-+||..|...|+..|.+.|.+.+
T Consensus         8 d~fD~Iv~-lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~G   60 (139)
T KOG4595|consen    8 DDFDDIVL-LEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILG   60 (139)
T ss_pred             hHHHHHHH-HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444433 334458888888888888888888888888888888888888888

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=97.02  E-value=0.0036  Score=54.56  Aligned_cols=8  Identities=13%  Similarity=0.135  Sum_probs=3.1

Q ss_pred             CCcccccc
Q 028154          192 PAIQVHLE  199 (213)
Q Consensus       192 p~i~~~~~  199 (213)
                      .++.|+++
T Consensus       176 ~~v~i~v~  183 (246)
T PRK05687        176 GKPQLRVN  183 (246)
T ss_pred             CCceEEEC
Confidence            33444433

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.48  E-value=0.019  Score=50.76  Aligned_cols=39  Identities=26%  Similarity=0.550  Sum_probs=31.1

Q ss_pred             HhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHH
Q 028154           56 QFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGL   94 (213)
Q Consensus        56 ~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~   94 (213)
                      .-+..+++++|..|.++++++||..||.+|+.-|..-|+
T Consensus        54 ~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~~   92 (234)
T COG1317          54 ESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR   92 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345578888888888888888888888888888877776

>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1

Probab=96.00  E-value=0.012  Score=38.58  Aligned_cols=34  Identities=32%  Similarity=0.611  Sum_probs=19.3

Q ss_pred             cchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHH
Q 028154           60 IGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWG   93 (213)
Q Consensus        60 ~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG   93 (213)
                      .|+.+|..+|-.+..+.||..||..|+.+|+..|
T Consensus         4 eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G   37 (39)
T PF09811_consen    4 EGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKG   37 (39)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555555555555555555555555555555544

The exact function has not been determined.

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=94.04  E-value=0.82  Score=40.37  Aligned_cols=26  Identities=8%  Similarity=0.063  Sum_probs=14.0

Q ss_pred             hhhhHHHHHHHhhhCCCcccccchhh
Q 028154          177 LENHFGELESIILETPAIQVHLEVQK  202 (213)
Q Consensus       177 l~~~~~~l~slL~~sp~i~~~~~~~~  202 (213)
                      +.+.+++....+..++.|.|+++..-
T Consensus       161 i~~lv~~al~~l~~~~~i~I~v~p~d  186 (255)
T TIGR03825       161 FQALVRQVLSEVREFDEVSIYVHPHW  186 (255)
T ss_pred             HHHHHHHHHHhccCCCcEEEEECHHH
Confidence            44455555555555555555555544

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.08  E-value=1.7  Score=38.54  Aligned_cols=40  Identities=28%  Similarity=0.333  Sum_probs=24.9

Q ss_pred             HHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHH
Q 028154           50 WQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSG   89 (213)
Q Consensus        50 w~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG   89 (213)
                      +..-..+=..++|..|-.+|.+.++|.||.+||.+|..-|
T Consensus        52 ~~~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~   91 (234)
T COG1317          52 ELESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEG   91 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555666666666666666666666666665555

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=90.92  E-value=4  Score=36.39  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=12.0

Q ss_pred             chhhhhhhHHHHHHHhhhCCCccc
Q 028154          173 DRSRLENHFGELESIILETPAIQV  196 (213)
Q Consensus       173 ~~~~l~~~~~~l~slL~~sp~i~~  196 (213)
                      +...++....++.+++...+.+.|
T Consensus       216 d~~~l~~~~~~l~~~l~~~~~i~I  239 (281)
T PRK06669        216 DYEYVKEQKDELISLLDNEEHLKI  239 (281)
T ss_pred             HHHHHHHhHHHHHHhcCCCCCeEE
Confidence            444555555555555554444443

>KOG4774 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.71  E-value=1.2  Score=38.76  Aligned_cols=81  Identities=19%  Similarity=0.188  Sum_probs=60.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccchhhHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHH
Q 028154           19 CDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGV   98 (213)
Q Consensus        19 ~~~~D~~~~ddDDvwgs~Dee~~~~~~~~rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~   98 (213)
                      +|.+|+.+.+|..    +|.....++...+--++.-..=-..|-.-|-++--.+++-.||-.|-+.|.++|.-.|.+.+.
T Consensus        11 nn~~d~~d~SDeE----sd~~~l~~~elq~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsal   86 (190)
T KOG4774|consen   11 NNPGDKGDVSDEE----SDESLLAQRELQSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSAL   86 (190)
T ss_pred             cCCCccccccCch----hHHHHhhcHHHHHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            5667776666544    444554444555555555556677888888888888888999999999999999999999998


Q ss_pred             HHHhh
Q 028154           99 TSALV  103 (213)
Q Consensus        99 lsal~  103 (213)
                      ++-+-
T Consensus        87 l~~f~   91 (190)
T KOG4774|consen   87 LSWFH   91 (190)
T ss_pred             HHHcc
Confidence            88765

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=84.51  E-value=21  Score=31.78  Aligned_cols=29  Identities=14%  Similarity=0.180  Sum_probs=21.7

Q ss_pred             hhhhhhHHHHHHHhhhCCCcccccchhhH
Q 028154          175 SRLENHFGELESIILETPAIQVHLEVQKY  203 (213)
Q Consensus       175 ~~l~~~~~~l~slL~~sp~i~~~~~~~~~  203 (213)
                      .-+....+++...|...+.+.++++..-|
T Consensus       189 ~~i~~li~~al~~l~~~~~i~I~V~p~d~  217 (281)
T PRK06669        189 EIALALVKELLKEVKDATDITIRVNPEDY  217 (281)
T ss_pred             HHHHHHHHHHHHHcCcCCcEEEEECHHHH
Confidence            34667778888888888888888866555

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=80.08  E-value=36  Score=30.06  Aligned_cols=26  Identities=23%  Similarity=0.230  Sum_probs=18.0

Q ss_pred             CcchhhhhhhHHHHHHHhhhCCCccc
Q 028154          171 SSDRSRLENHFGELESIILETPAIQV  196 (213)
Q Consensus       171 ~~~~~~l~~~~~~l~slL~~sp~i~~  196 (213)
                      +.+...++.....|.+.+.....+.|
T Consensus       184 p~d~~~v~~~~~~l~~~~~~~~~i~i  209 (255)
T TIGR03825       184 PHWYERVAAQKDELQSILPACEHLAV  209 (255)
T ss_pred             HHHHHHHHHhHHHHHhhcCCCCceEE
Confidence            34677888888888888765555544

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00